Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118560 | XP_024638206.1 | 87.658 | 316 | 31 | 3 | 1 | 310 | 1 | 314 | 0.0 | 541 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118560 | sp|Q9FG08|ATXR4_ARATH | 57.292 | 288 | 114 | 3 | 30 | 310 | 40 | 325 | 2.46e-110 | 326 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118560 | A0A396JSM6 | 87.658 | 316 | 31 | 3 | 1 | 310 | 1 | 314 | 0.0 | 541 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0118560 | TR | SET |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0070670 | Msa0118560 | 0.962220 | 1.280774e-120 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118560 | MtrunA17_Chr1g0176091 | 87.658 | 316 | 31 | 3 | 1 | 310 | 1 | 314 | 0.0 | 541 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118560 | AT5G06620.1 | 57.292 | 288 | 114 | 3 | 30 | 310 | 40 | 325 | 2.50e-111 | 326 |
| Msa0118560 | AT5G06620.2 | 53.049 | 164 | 71 | 1 | 31 | 188 | 41 | 204 | 4.72e-55 | 179 |
Find 108 sgRNAs with CRISPR-Local
Find 368 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGTTTAAAATTTCCCTTTC+TGG | 0.140471 | 1_3:-41425955 | Msa0118560:CDS |
| ATGTAAACCTGCTCAAATTT+TGG | 0.164511 | 1_3:-41422841 | Msa0118560:three_prime_UTR |
| ATCCCAATGCACACATTATA+TGG | 0.261658 | 1_3:-41424745 | Msa0118560:CDS |
| GAACTATTGTTTCAAGGTTT+CGG | 0.307912 | 1_3:-41422966 | Msa0118560:CDS |
| AGGGTGGCAGACGGCGGGTT+CGG | 0.369692 | 1_3:+41427489 | None:intergenic |
| CTGCTATATTGATGCCAGTC+TGG | 0.385411 | 1_3:-41423006 | Msa0118560:CDS |
| TATGTCAAGACTGTCACTTC+TGG | 0.385509 | 1_3:+41425896 | None:intergenic |
| CGCATTGAGTTGGCTGGTGG+TGG | 0.393454 | 1_3:-41425118 | Msa0118560:CDS |
| CGACGAGAACTATTGTTTCA+AGG | 0.397593 | 1_3:-41422972 | Msa0118560:CDS |
| AGCATTTCCAACAGCAGCTT+CGG | 0.399684 | 1_3:+41425051 | None:intergenic |
| ACAATGGTACATCAGTGTTT+TGG | 0.402161 | 1_3:-41425164 | Msa0118560:intron |
| AATATTAAGTGGTTGGATAC+AGG | 0.402577 | 1_3:-41422869 | Msa0118560:three_prime_UTR |
| TTGCTATACTTAATTTATGA+TGG | 0.405618 | 1_3:+41422741 | None:intergenic |
| CAAAAGCGGGATGAGAGGTT+AGG | 0.405960 | 1_3:+41427418 | None:intergenic |
| TTTGCTACTCTTGCCTCGCC+AGG | 0.409626 | 1_3:-41427444 | Msa0118560:CDS |
| GAGGGGAGGAAGGTGAAGGG+TGG | 0.412983 | 1_3:+41427473 | None:intergenic |
| TTGGCTTGCATGATCATATC+AGG | 0.415237 | 1_3:-41425924 | Msa0118560:CDS |
| GTGAAGTGGTTTAGTGAAAC+GGG | 0.419593 | 1_3:+41427633 | None:intergenic |
| GGATGAGAGGTTAGGGAGCC+TGG | 0.419601 | 1_3:+41427426 | None:intergenic |
| AATCATCTCAGGTGTCAAAC+TGG | 0.423936 | 1_3:+41425863 | None:intergenic |
| CAAGAGTAGCAAACGGGGTG+AGG | 0.430548 | 1_3:+41427454 | None:intergenic |
| GCCACAGTCATGATTATAGA+AGG | 0.431746 | 1_3:+41425012 | None:intergenic |
| TTATAACAGAAAGTTGGTTA+TGG | 0.437761 | 1_3:+41422792 | None:intergenic |
| CTAGGATTTGCAATATTAAG+TGG | 0.439299 | 1_3:-41422880 | Msa0118560:three_prime_UTR |
| TGAGATCACCGGTAGGGATT+GGG | 0.440187 | 1_3:+41427521 | None:intergenic |
| ATCCATATAATGTGTGCATT+GGG | 0.443622 | 1_3:+41424743 | None:intergenic |
| AAGTCAAACTTCATAAATAT+AGG | 0.451486 | 1_3:-41422614 | Msa0118560:three_prime_UTR |
| ATGAGATCACCGGTAGGGAT+TGG | 0.451811 | 1_3:+41427520 | None:intergenic |
| TCCCTTTCTGGTAAAGCGGT+TGG | 0.454495 | 1_3:-41425943 | Msa0118560:CDS |
| GGGTGAGGGGAGGAAGGTGA+AGG | 0.455595 | 1_3:+41427469 | None:intergenic |
| AACAAAATGTTCCTAAAAGA+AGG | 0.455685 | 1_3:+41425276 | None:intergenic |
| TATCCATATAATGTGTGCAT+TGG | 0.459802 | 1_3:+41424742 | None:intergenic |
| AAGAGTAGCAAACGGGGTGA+GGG | 0.461472 | 1_3:+41427455 | None:intergenic |
| AGCATTCAATATATATTTCG+TGG | 0.461655 | 1_3:-41422764 | Msa0118560:three_prime_UTR |
| GCAAGGGTGGGAACAAAAGC+GGG | 0.463201 | 1_3:+41427405 | None:intergenic |
| TAAATACCCAAAATTTGAGC+AGG | 0.469821 | 1_3:+41422834 | None:intergenic |
| GCGAGGCAAGAGTAGCAAAC+GGG | 0.470976 | 1_3:+41427448 | None:intergenic |
| GGCAAGGGTGGGAACAAAAG+CGG | 0.472237 | 1_3:+41427404 | None:intergenic |
| TCGAGCATCGCGGTCCAGAC+TGG | 0.473277 | 1_3:+41422992 | None:intergenic |
| ACCTGAGTGCGTTGGTGGCA+AGG | 0.476597 | 1_3:+41427388 | None:intergenic |
| TAATGCAGTGGCAAAATTGA+AGG | 0.480874 | 1_3:-41424717 | Msa0118560:CDS |
| CAATGCATTTCGCATTGAGT+TGG | 0.481923 | 1_3:-41425128 | Msa0118560:CDS |
| GAGTGCGTTGGTGGCAAGGG+TGG | 0.484991 | 1_3:+41427392 | None:intergenic |
| GGTGAAGGGTGGCAGACGGC+GGG | 0.490528 | 1_3:+41427484 | None:intergenic |
| GCCAACCGCTTTACCAGAAA+GGG | 0.492202 | 1_3:+41425942 | None:intergenic |
| TGTATGTAGTTGAACTGAAA+TGG | 0.496566 | 1_3:-41427689 | Msa0118560:exon |
| GATTTGCAATATTAAGTGGT+TGG | 0.497852 | 1_3:-41422876 | Msa0118560:three_prime_UTR |
| TGTGAAGTGGTTTAGTGAAA+CGG | 0.500644 | 1_3:+41427632 | None:intergenic |
| AAAAGCGGGATGAGAGGTTA+GGG | 0.501592 | 1_3:+41427419 | None:intergenic |
| ATCTCAGGTGTCAAACTGGC+AGG | 0.503541 | 1_3:+41425867 | None:intergenic |
| CCTGAGTGCGTTGGTGGCAA+GGG | 0.508044 | 1_3:+41427389 | None:intergenic |
| CTCACCTCTAAAATCATCTC+AGG | 0.511645 | 1_3:+41425852 | None:intergenic |
| AGCCAACCGCTTTACCAGAA+AGG | 0.512299 | 1_3:+41425941 | None:intergenic |
| AATCGGAGGTGGTGAGGTGG+TGG | 0.512335 | 1_3:+41427591 | None:intergenic |
| GGCGAGGCAAGAGTAGCAAA+CGG | 0.513389 | 1_3:+41427447 | None:intergenic |
| ATGTTGAGATGAGAGCAAAT+TGG | 0.513802 | 1_3:-41427220 | Msa0118560:CDS |
| GCCCTCCGTGACATTGATGA+AGG | 0.515818 | 1_3:-41424695 | Msa0118560:intron |
| ACAGAATACAAGAAGAAAGT+AGG | 0.517697 | 1_3:+41422706 | None:intergenic |
| CAAACGGGGTGAGGGGAGGA+AGG | 0.521659 | 1_3:+41427463 | None:intergenic |
| TGCGAAGACGGCGCGACCTA+CGG | 0.522245 | 1_3:+41427549 | None:intergenic |
| GATTGGGCGAGTTGCGAAGA+CGG | 0.524161 | 1_3:+41427537 | None:intergenic |
| GCATTTCGCATTGAGTTGGC+TGG | 0.527315 | 1_3:-41425124 | Msa0118560:CDS |
| AGGTGAAGGGTGGCAGACGG+CGG | 0.534390 | 1_3:+41427483 | None:intergenic |
| TGCAATAAGTGCCTTTGTGA+AGG | 0.535808 | 1_3:+41425319 | None:intergenic |
| GTAGAAGCCGAAGCTGCTGT+TGG | 0.536645 | 1_3:-41425058 | Msa0118560:CDS |
| AGTGCGTTGGTGGCAAGGGT+GGG | 0.538355 | 1_3:+41427393 | None:intergenic |
| GGTGAGGGGAGGAAGGTGAA+GGG | 0.538492 | 1_3:+41427470 | None:intergenic |
| GGAAGGTGAAGGGTGGCAGA+CGG | 0.544300 | 1_3:+41427480 | None:intergenic |
| TTGTGTTTATAACAGAAAGT+TGG | 0.547840 | 1_3:+41422786 | None:intergenic |
| GTGGCAGACGGCGGGTTCGG+CGG | 0.556828 | 1_3:+41427492 | None:intergenic |
| AATGCACCTGAGTGCGTTGG+TGG | 0.558601 | 1_3:+41427383 | None:intergenic |
| AGAGTAGCAAACGGGGTGAG+GGG | 0.558878 | 1_3:+41427456 | None:intergenic |
| GTAGCAAACGGGGTGAGGGG+AGG | 0.564387 | 1_3:+41427459 | None:intergenic |
| CCCTTGCCACCAACGCACTC+AGG | 0.567423 | 1_3:-41427389 | Msa0118560:intron |
| AGAGAGACTCGAATCGGAGG+TGG | 0.568166 | 1_3:+41427580 | None:intergenic |
| AGACGGCGGGTTCGGCGGTG+TGG | 0.568637 | 1_3:+41427497 | None:intergenic |
| GCAACTCGCCCAATCCCTAC+CGG | 0.570799 | 1_3:-41427529 | Msa0118560:CDS |
| GACTCGAATCGGAGGTGGTG+AGG | 0.579357 | 1_3:+41427585 | None:intergenic |
| AAGAGGGGTTCAACTTGCTA+AGG | 0.581272 | 1_3:-41425346 | Msa0118560:CDS |
| TGAAACGGGAAGGAGCTAAA+CGG | 0.583529 | 1_3:+41427647 | None:intergenic |
| AATTTCCCTTTCTGGTAAAG+CGG | 0.590443 | 1_3:-41425947 | Msa0118560:CDS |
| GGGAACAAAAGCGGGATGAG+AGG | 0.592712 | 1_3:+41427413 | None:intergenic |
| TCGGTGAGAGAGACTCGAAT+CGG | 0.592931 | 1_3:+41427574 | None:intergenic |
| CACTTAATATTGCAAATCCT+AGG | 0.595534 | 1_3:+41422881 | None:intergenic |
| CAGTCATGATTATAGAAGGA+AGG | 0.596544 | 1_3:+41425016 | None:intergenic |
| GGCGGTGTGGATGAGATCAC+CGG | 0.599696 | 1_3:+41427510 | None:intergenic |
| AGAGGTTAGGGAGCCTGGCG+AGG | 0.601381 | 1_3:+41427431 | None:intergenic |
| GAGAATGAAAAGATGTGAAG+TGG | 0.605679 | 1_3:+41427619 | None:intergenic |
| ACCTTCATCAATGTCACGGA+GGG | 0.613577 | 1_3:+41424694 | None:intergenic |
| GACGGCGCGACCTACGGAGT+CGG | 0.623769 | 1_3:+41427555 | None:intergenic |
| GTGAGAGAGACTCGAATCGG+AGG | 0.630122 | 1_3:+41427577 | None:intergenic |
| TCGAATCGGAGGTGGTGAGG+TGG | 0.632428 | 1_3:+41427588 | None:intergenic |
| TTTCGCATTGAGTTGGCTGG+TGG | 0.638184 | 1_3:-41425121 | Msa0118560:CDS |
| ATGATCATGCAATTCAAGTG+TGG | 0.638581 | 1_3:+41422656 | None:intergenic |
| TGTGGATGAGATCACCGGTA+GGG | 0.641895 | 1_3:+41427515 | None:intergenic |
| ACAAACCTTCATCAATGTCA+CGG | 0.645369 | 1_3:+41424690 | None:intergenic |
| GTCTCTCTCACCGACTCCGT+AGG | 0.654378 | 1_3:-41427565 | Msa0118560:CDS |
| AATTGTAGTAGGTGCTCGCA+TGG | 0.655029 | 1_3:-41422933 | Msa0118560:CDS |
| GTGTGGATGAGATCACCGGT+AGG | 0.663265 | 1_3:+41427514 | None:intergenic |
| TCAACTACATACAACGAACA+AGG | 0.671843 | 1_3:+41427699 | None:intergenic |
| CGAGGCAAGAGTAGCAAACG+GGG | 0.672756 | 1_3:+41427449 | None:intergenic |
| GCTAAGGAATGCCTTCACAA+AGG | 0.678500 | 1_3:-41425330 | Msa0118560:CDS |
| AGTGGTTTAGTGAAACGGGA+AGG | 0.687792 | 1_3:+41427637 | None:intergenic |
| TATATGGATAGATAATGCAG+TGG | 0.693112 | 1_3:-41424729 | Msa0118560:CDS |
| GTGATAAATTGTGTAATGTG+TGG | 0.703416 | 1_3:-41422557 | Msa0118560:three_prime_UTR |
| TTGCTCTCATCTCAACATCG+TGG | 0.722442 | 1_3:+41427225 | None:intergenic |
| AACCTTCATCAATGTCACGG+AGG | 0.727757 | 1_3:+41424693 | None:intergenic |
| ATAGTTCTCGTCGAGCATCG+CGG | 0.732025 | 1_3:+41422982 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTTATTTTATTTTT+TGG | + | chr1_3:41423257-41423276 | None:intergenic | 0.0% |
| !!! | TTTGGGATTTTTATATTTAT+AGG | - | chr1_3:41423024-41423043 | Msa0118560:CDS | 15.0% |
| !! | AAAACATAAAAACAATAACA+AGG | + | chr1_3:41423413-41423432 | None:intergenic | 15.0% |
| !! | AATCAAATAAAATACAATTG+AGG | + | chr1_3:41425612-41425631 | None:intergenic | 15.0% |
| !! | ATTAGATATCATAAGAATTT+AGG | + | chr1_3:41426629-41426648 | None:intergenic | 15.0% |
| !! | ATAAAATGTAGAACTTAATT+AGG | - | chr1_3:41427030-41427049 | Msa0118560:intron | 15.0% |
| !!! | ACAAACATGTATACTTATTT+TGG | - | chr1_3:41423006-41423025 | Msa0118560:CDS | 20.0% |
| !!! | CAAACATGTATACTTATTTT+GGG | - | chr1_3:41423007-41423026 | Msa0118560:CDS | 20.0% |
| !!! | ATTTTTTGGTTCAAGAATTA+TGG | + | chr1_3:41423243-41423262 | None:intergenic | 20.0% |
| !!! | ATCAAAATTTTAAGTACAAG+GGG | + | chr1_3:41423950-41423969 | None:intergenic | 20.0% |
| !!! | GATCAAAATTTTAAGTACAA+GGG | + | chr1_3:41423951-41423970 | None:intergenic | 20.0% |
| !!! | TGATCAAAATTTTAAGTACA+AGG | + | chr1_3:41423952-41423971 | None:intergenic | 20.0% |
| !! | TTATGTATAGCACTAAAAAA+AGG | - | chr1_3:41424017-41424036 | Msa0118560:intron | 20.0% |
| !! | TATGTATAGCACTAAAAAAA+GGG | - | chr1_3:41424018-41424037 | Msa0118560:intron | 20.0% |
| !! | GTTTCAGTAATTTATCATTA+CGG | + | chr1_3:41424203-41424222 | None:intergenic | 20.0% |
| !!! | AATTGTCATTTAGGTAATTT+TGG | + | chr1_3:41424276-41424295 | None:intergenic | 20.0% |
| !! | GAAAATATGCATTAATTGAA+GGG | + | chr1_3:41424553-41424572 | None:intergenic | 20.0% |
| !! | AGAAAATATGCATTAATTGA+AGG | + | chr1_3:41424554-41424573 | None:intergenic | 20.0% |
| !!! | TTTTCACTTATAATCAATAC+CGG | - | chr1_3:41424685-41424704 | Msa0118560:intron | 20.0% |
| !! | TTCAATTTGAACATCAATAA+TGG | + | chr1_3:41424838-41424857 | None:intergenic | 20.0% |
| !!! | ATTGAAGTTTGATAAAGTTT+TGG | - | chr1_3:41424852-41424871 | Msa0118560:intron | 20.0% |
| !!! | TATAAACATCATTTTTCAGA+TGG | - | chr1_3:41424907-41424926 | Msa0118560:intron | 20.0% |
| !!! | TTTAAGTTTTAACCAAACAA+TGG | - | chr1_3:41425096-41425115 | Msa0118560:CDS | 20.0% |
| !!! | TTTTTCCCTTTTAATTTTGT+AGG | - | chr1_3:41425637-41425656 | Msa0118560:intron | 20.0% |
| !!! | TTGTTGATAAAACATGATAT+AGG | + | chr1_3:41425768-41425787 | None:intergenic | 20.0% |
| !! | TGATTGATGTTATAAAAGAT+GGG | + | chr1_3:41425878-41425897 | None:intergenic | 20.0% |
| !! | ATGATTGATGTTATAAAAGA+TGG | + | chr1_3:41425879-41425898 | None:intergenic | 20.0% |
| !!! | ATTAAGAAAGAGGTTTTAAA+AGG | + | chr1_3:41425925-41425944 | None:intergenic | 20.0% |
| !! | CAATAAAACTATTAAGAAAG+AGG | + | chr1_3:41425935-41425954 | None:intergenic | 20.0% |
| !!! | GAATAACTACATTCTAAAAT+TGG | + | chr1_3:41426898-41426917 | None:intergenic | 20.0% |
| !! | AAAAATTTGACTGAAAATCA+AGG | + | chr1_3:41426974-41426993 | None:intergenic | 20.0% |
| !!! | GTTGATCAAATGATAATTTT+AGG | + | chr1_3:41427209-41427228 | None:intergenic | 20.0% |
| !! | TTGCTATACTTAATTTATGA+TGG | + | chr1_3:41427538-41427557 | None:intergenic | 20.0% |
| !!! | TTTTATTGTTAAACATCACT+AGG | - | chr1_3:41427592-41427611 | Msa0118560:CDS | 20.0% |
| !! | AAGTCAAACTTCATAAATAT+AGG | - | chr1_3:41427662-41427681 | Msa0118560:CDS | 20.0% |
| !!! | CTGATTTTGATAATTATTGC+CGG | - | chr1_3:41423080-41423099 | Msa0118560:intron | 25.0% |
| ! | AAGCAGTTTAATATGTTCTA+TGG | - | chr1_3:41423216-41423235 | Msa0118560:intron | 25.0% |
| ! | TAAACAGATAAGTGAACTTA+GGG | + | chr1_3:41423299-41423318 | None:intergenic | 25.0% |
| ! | AAACAACACTTTATTCACTT+TGG | - | chr1_3:41423694-41423713 | Msa0118560:intron | 25.0% |
| !!! | GAATTTTCTAATTTAGCTTG+TGG | - | chr1_3:41423750-41423769 | Msa0118560:intron | 25.0% |
| !! | AGGAACAAAGTAATTTTCAA+AGG | - | chr1_3:41423796-41423815 | Msa0118560:intron | 25.0% |
| !!! | TCAAAATTTTAAGTACAAGG+GGG | + | chr1_3:41423949-41423968 | None:intergenic | 25.0% |
| ! | CAATAAAATACTATAAGCTG+AGG | + | chr1_3:41424251-41424270 | None:intergenic | 25.0% |
| !!! | CATTAATTGAAGGGTATTTT+AGG | + | chr1_3:41424544-41424563 | None:intergenic | 25.0% |
| !!! | TTTCATTTACCCTTTTTTCT+CGG | - | chr1_3:41424740-41424759 | Msa0118560:CDS | 25.0% |
| ! | GAAATACAATGATTTACAGA+AGG | + | chr1_3:41424801-41424820 | None:intergenic | 25.0% |
| ! | AACAAAATGTTCCTAAAAGA+AGG | + | chr1_3:41425003-41425022 | None:intergenic | 25.0% |
| ! | AAATGAACAATCTCACTTAT+TGG | - | chr1_3:41425500-41425519 | Msa0118560:intron | 25.0% |
| ! | AAAACATGATATAGGCAAAA+AGG | + | chr1_3:41425760-41425779 | None:intergenic | 25.0% |
| !! | CATGTTTTATCAACAAAATC+TGG | - | chr1_3:41425772-41425791 | Msa0118560:intron | 25.0% |
| !!! | ACTCTTCTGAAATAAAATCA+GGG | + | chr1_3:41426356-41426375 | None:intergenic | 25.0% |
| !!! | AACTCTTCTGAAATAAAATC+AGG | + | chr1_3:41426357-41426376 | None:intergenic | 25.0% |
| ! | AAGAAAGAAAACAAGACATT+GGG | + | chr1_3:41426448-41426467 | None:intergenic | 25.0% |
| ! | TAAGAAAGAAAACAAGACAT+TGG | + | chr1_3:41426449-41426468 | None:intergenic | 25.0% |
| !! | GTATTACAGAGTATTAGATA+AGG | - | chr1_3:41426490-41426509 | Msa0118560:intron | 25.0% |
| ! | CTATTATTGATCGACAATTA+TGG | - | chr1_3:41426518-41426537 | Msa0118560:intron | 25.0% |
| ! | TAGCTCATTAATCAAACAAA+TGG | - | chr1_3:41426795-41426814 | Msa0118560:intron | 25.0% |
| ! | AATTGGATGATTACATACAT+TGG | + | chr1_3:41426881-41426900 | None:intergenic | 25.0% |
| ! | CTATAAGAGAATAACTATGA+AGG | + | chr1_3:41427005-41427024 | None:intergenic | 25.0% |
| ! | TTTCTTACATTTGTGATAGA+AGG | - | chr1_3:41427124-41427143 | Msa0118560:intron | 25.0% |
| !! | TTATAACAGAAAGTTGGTTA+TGG | + | chr1_3:41427487-41427506 | None:intergenic | 25.0% |
| ! | TTGTGTTTATAACAGAAAGT+TGG | + | chr1_3:41427493-41427512 | None:intergenic | 25.0% |
| ! | AGCATTCAATATATATTTCG+TGG | - | chr1_3:41427512-41427531 | Msa0118560:CDS | 25.0% |
| TGTATGTAGTTGAACTGAAA+TGG | - | chr1_3:41422587-41422606 | Msa0118560:three_prime_UTR | 30.0% | |
| GTGCATGTAAAATGTAATGT+AGG | - | chr1_3:41422970-41422989 | Msa0118560:CDS | 30.0% | |
| TTAGAGAAAAACTCTCATAC+CGG | + | chr1_3:41423102-41423121 | None:intergenic | 30.0% | |
| TTAAAGATTGTTGAAACCCA+TGG | + | chr1_3:41423151-41423170 | None:intergenic | 30.0% | |
| ATGAGACTAATCTTTCTCTT+TGG | - | chr1_3:41423187-41423206 | Msa0118560:intron | 30.0% | |
| AAACAGATAAGTGAACTTAG+GGG | + | chr1_3:41423298-41423317 | None:intergenic | 30.0% | |
| GTAAACAGATAAGTGAACTT+AGG | + | chr1_3:41423300-41423319 | None:intergenic | 30.0% | |
| CTTATCTGTTTACTAGTGTA+AGG | - | chr1_3:41423307-41423326 | Msa0118560:intron | 30.0% | |
| ! | TATGTTTTCGTTACCTGTTT+TGG | - | chr1_3:41423425-41423444 | Msa0118560:intron | 30.0% |
| AAATTTCAAACCACCAAAAC+AGG | + | chr1_3:41423441-41423460 | None:intergenic | 30.0% | |
| TATACAAACTCACAATGATG+AGG | - | chr1_3:41423468-41423487 | Msa0118560:intron | 30.0% | |
| ATACAAACTCACAATGATGA+GGG | - | chr1_3:41423469-41423488 | Msa0118560:intron | 30.0% | |
| CAAAATTGTGTCTCAGATAA+AGG | - | chr1_3:41423837-41423856 | Msa0118560:intron | 30.0% | |
| !! | AGTTGAATGCTTTGTTTGTT+GGG | - | chr1_3:41423915-41423934 | Msa0118560:intron | 30.0% |
| CTTGTGTTAAAAACAAGGTA+TGG | + | chr1_3:41424118-41424137 | None:intergenic | 30.0% | |
| !!! | TACCTTGTTTTTAACACAAG+AGG | - | chr1_3:41424118-41424137 | Msa0118560:intron | 30.0% |
| ! | AGGTTAGGTAATTGTCATTT+AGG | + | chr1_3:41424285-41424304 | None:intergenic | 30.0% |
| ! | ATTACCTAACCTCTTTTCAA+AGG | - | chr1_3:41424293-41424312 | Msa0118560:intron | 30.0% |
| ! | CAATGACTCTTTTATTCTCA+TGG | - | chr1_3:41424578-41424597 | Msa0118560:intron | 30.0% |
| !! | ATCATTTTTCAGATGGAAGA+GGG | - | chr1_3:41424914-41424933 | Msa0118560:intron | 30.0% |
| ! | ATTGCTTGTATCCTTCTTTT+AGG | - | chr1_3:41424989-41425008 | Msa0118560:intron | 30.0% |
| TGTTGAGAGATTACTTATCT+TGG | - | chr1_3:41425070-41425089 | Msa0118560:CDS | 30.0% | |
| GAAATATAAGCTCATGTTGA+CGG | + | chr1_3:41425320-41425339 | None:intergenic | 30.0% | |
| AATATTTGCCTTCCATGTTT+AGG | - | chr1_3:41425406-41425425 | Msa0118560:intron | 30.0% | |
| TACATGATTTCTCCTAAACA+TGG | + | chr1_3:41425421-41425440 | None:intergenic | 30.0% | |
| AAAAATGACAAGGTTTAGAG+AGG | + | chr1_3:41425471-41425490 | None:intergenic | 30.0% | |
| ATCCATATAATGTGTGCATT+GGG | + | chr1_3:41425536-41425555 | None:intergenic | 30.0% | |
| TATCCATATAATGTGTGCAT+TGG | + | chr1_3:41425537-41425556 | None:intergenic | 30.0% | |
| TATATGGATAGATAATGCAG+TGG | - | chr1_3:41425547-41425566 | Msa0118560:intron | 30.0% | |
| !!! | TCCCTTTTAATTTTGTAGGA+TGG | - | chr1_3:41425641-41425660 | Msa0118560:intron | 30.0% |
| GCCATCCTACAAAATTAAAA+GGG | + | chr1_3:41425645-41425664 | None:intergenic | 30.0% | |
| AGCCATCCTACAAAATTAAA+AGG | + | chr1_3:41425646-41425665 | None:intergenic | 30.0% | |
| ! | GATGTTATAAAAGATGGGTT+GGG | + | chr1_3:41425873-41425892 | None:intergenic | 30.0% |
| TGATGTTATAAAAGATGGGT+TGG | + | chr1_3:41425874-41425893 | None:intergenic | 30.0% | |
| AATCATTGACAGAACACTTT+AGG | - | chr1_3:41425893-41425912 | Msa0118560:CDS | 30.0% | |
| TAGATTTGAATGACTTACCA+TGG | - | chr1_3:41426407-41426426 | Msa0118560:intron | 30.0% | |
| AGAAAGAAAACAAGACATTG+GGG | + | chr1_3:41426447-41426466 | None:intergenic | 30.0% | |
| TCATTCATGCAAGATATTAG+TGG | + | chr1_3:41426743-41426762 | None:intergenic | 30.0% | |
| GGAATTAAAAGTTAGCTGTA+AGG | - | chr1_3:41426816-41426835 | Msa0118560:intron | 30.0% | |
| TTACATACATTGGCATCTTA+TGG | + | chr1_3:41426871-41426890 | None:intergenic | 30.0% | |
| ATTTGACTGAAAATCAAGGA+TGG | + | chr1_3:41426970-41426989 | None:intergenic | 30.0% | |
| AACCATCTTTGTTAAATTGC+AGG | - | chr1_3:41427232-41427251 | Msa0118560:CDS | 30.0% | |
| GAACTATTGTTTCAAGGTTT+CGG | - | chr1_3:41427310-41427329 | Msa0118560:intron | 30.0% | |
| ! | GTTTTCAATGCAATTGTAGT+AGG | - | chr1_3:41427332-41427351 | Msa0118560:intron | 30.0% |
| TTTCTCCAAAAAATTCTCCT+AGG | - | chr1_3:41427378-41427397 | Msa0118560:intron | 30.0% | |
| !!! | CAAATCCTAGGAGAATTTTT+TGG | + | chr1_3:41427386-41427405 | None:intergenic | 30.0% |
| CACTTAATATTGCAAATCCT+AGG | + | chr1_3:41427398-41427417 | None:intergenic | 30.0% | |
| CTAGGATTTGCAATATTAAG+TGG | - | chr1_3:41427396-41427415 | Msa0118560:CDS | 30.0% | |
| GATTTGCAATATTAAGTGGT+TGG | - | chr1_3:41427400-41427419 | Msa0118560:CDS | 30.0% | |
| AATATTAAGTGGTTGGATAC+AGG | - | chr1_3:41427407-41427426 | Msa0118560:CDS | 30.0% | |
| ! | ATGTAAACCTGCTCAAATTT+TGG | - | chr1_3:41427435-41427454 | Msa0118560:CDS | 30.0% |
| ! | TGTAAACCTGCTCAAATTTT+GGG | - | chr1_3:41427436-41427455 | Msa0118560:CDS | 30.0% |
| TAAATACCCAAAATTTGAGC+AGG | + | chr1_3:41427445-41427464 | None:intergenic | 30.0% | |
| ACAGAATACAAGAAGAAAGT+AGG | + | chr1_3:41427573-41427592 | None:intergenic | 30.0% | |
| !!! | GATCATTTTTTTTACTGCAG+AGG | - | chr1_3:41427637-41427656 | Msa0118560:CDS | 30.0% |
| GTGATAAATTGTGTAATGTG+TGG | - | chr1_3:41427719-41427738 | Msa0118560:five_prime_UTR | 30.0% | |
| TCAACTACATACAACGAACA+AGG | + | chr1_3:41422580-41422599 | None:intergenic | 35.0% | |
| TGTGAAGTGGTTTAGTGAAA+CGG | + | chr1_3:41422647-41422666 | None:intergenic | 35.0% | |
| GAGAATGAAAAGATGTGAAG+TGG | + | chr1_3:41422660-41422679 | None:intergenic | 35.0% | |
| TAACATGTTGATCTGCAAGA+AGG | + | chr1_3:41422947-41422966 | None:intergenic | 35.0% | |
| ATGTTGAGATGAGAGCAAAT+TGG | - | chr1_3:41423056-41423075 | Msa0118560:intron | 35.0% | |
| ATTAGCATCTTCAATTGCCA+TGG | - | chr1_3:41423131-41423150 | Msa0118560:intron | 35.0% | |
| TTAGCATCTTCAATTGCCAT+GGG | - | chr1_3:41423132-41423151 | Msa0118560:intron | 35.0% | |
| TGTTTACTAGTGTAAGGTCT+GGG | - | chr1_3:41423313-41423332 | Msa0118560:intron | 35.0% | |
| TGAATCAGACTTATTGTTGG+AGG | + | chr1_3:41423349-41423368 | None:intergenic | 35.0% | |
| GTCTGAATCAGACTTATTGT+TGG | + | chr1_3:41423352-41423371 | None:intergenic | 35.0% | |
| TACAAACTCACAATGATGAG+GGG | - | chr1_3:41423470-41423489 | Msa0118560:intron | 35.0% | |
| TAAAGTTGTTGTCATGTGAC+TGG | - | chr1_3:41423511-41423530 | Msa0118560:intron | 35.0% | |
| AGCCTCTTGTGTAAAAAACA+GGG | - | chr1_3:41423561-41423580 | Msa0118560:intron | 35.0% | |
| TCTTGTGTAAAAAACAGGGA+GGG | - | chr1_3:41423565-41423584 | Msa0118560:intron | 35.0% | |
| !! | CTTTATTCACTTTGGTTCTC+TGG | - | chr1_3:41423702-41423721 | Msa0118560:intron | 35.0% |
| !! | TAATTTAGCTTGTGGTGATG+TGG | - | chr1_3:41423758-41423777 | Msa0118560:intron | 35.0% |
| !! | TCTGAGACACAATTTTGACA+AGG | + | chr1_3:41423834-41423853 | None:intergenic | 35.0% |
| TCAGATAAAGGTCTCATCAT+GGG | - | chr1_3:41423849-41423868 | Msa0118560:intron | 35.0% | |
| !! | GAGTTGAATGCTTTGTTTGT+TGG | - | chr1_3:41423914-41423933 | Msa0118560:intron | 35.0% |
| AGCCTCTTGTGTTAAAAACA+AGG | + | chr1_3:41424123-41424142 | None:intergenic | 35.0% | |
| TATTATGTGTAGCCCTATGA+TGG | - | chr1_3:41424155-41424174 | Msa0118560:intron | 35.0% | |
| ATTATGTGTAGCCCTATGAT+GGG | - | chr1_3:41424156-41424175 | Msa0118560:intron | 35.0% | |
| ! | TAACCTCTTTTCAAAGGAAC+CGG | - | chr1_3:41424299-41424318 | Msa0118560:intron | 35.0% |
| ! | GAAAGGGAAATTTTAAACCC+CGG | + | chr1_3:41424321-41424340 | None:intergenic | 35.0% |
| ! | GGGTTTAAAATTTCCCTTTC+TGG | - | chr1_3:41424321-41424340 | Msa0118560:intron | 35.0% |
| ! | AATTTCCCTTTCTGGTAAAG+CGG | - | chr1_3:41424329-41424348 | Msa0118560:intron | 35.0% |
| ATGGAACAACTTCTCATGAA+GGG | - | chr1_3:41424597-41424616 | Msa0118560:intron | 35.0% | |
| TCACTTATAATCAATACCGG+AGG | - | chr1_3:41424688-41424707 | Msa0118560:intron | 35.0% | |
| TGAACAAACAATACTTCCTC+CGG | + | chr1_3:41424707-41424726 | None:intergenic | 35.0% | |
| TTCGAAAACTAATGAGTGGT+AGG | + | chr1_3:41424769-41424788 | None:intergenic | 35.0% | |
| !!! | TACCACTCATTAGTTTTCGA+AGG | - | chr1_3:41424768-41424787 | Msa0118560:intron | 35.0% |
| TTCCTTCGAAAACTAATGAG+TGG | + | chr1_3:41424773-41424792 | None:intergenic | 35.0% | |
| !! | CATCATTTTTCAGATGGAAG+AGG | - | chr1_3:41424913-41424932 | Msa0118560:intron | 35.0% |
| !! | TCATTTTTCAGATGGAAGAG+GGG | - | chr1_3:41424915-41424934 | Msa0118560:intron | 35.0% |
| ACACATGCATAAAGAGATCA+TGG | - | chr1_3:41425042-41425061 | Msa0118560:CDS | 35.0% | |
| AACACTGATGTACCATTGTT+TGG | + | chr1_3:41425111-41425130 | None:intergenic | 35.0% | |
| ! | ACAATGGTACATCAGTGTTT+TGG | - | chr1_3:41425112-41425131 | Msa0118560:CDS | 35.0% |
| CAGTCATGATTATAGAAGGA+AGG | + | chr1_3:41425263-41425282 | None:intergenic | 35.0% | |
| TCCTTCTATAATCATGACTG+TGG | - | chr1_3:41425263-41425282 | Msa0118560:intron | 35.0% | |
| TGATTTCTCCTAAACATGGA+AGG | + | chr1_3:41425417-41425436 | None:intergenic | 35.0% | |
| TCTCAGGGTTAAAAATGACA+AGG | + | chr1_3:41425481-41425500 | None:intergenic | 35.0% | |
| GTGAGATTGTTCATTTCTCA+GGG | + | chr1_3:41425496-41425515 | None:intergenic | 35.0% | |
| AGTGAGATTGTTCATTTCTC+AGG | + | chr1_3:41425497-41425516 | None:intergenic | 35.0% | |
| ATCCCAATGCACACATTATA+TGG | - | chr1_3:41425531-41425550 | Msa0118560:intron | 35.0% | |
| TAATGCAGTGGCAAAATTGA+AGG | - | chr1_3:41425559-41425578 | Msa0118560:intron | 35.0% | |
| ACAAACCTTCATCAATGTCA+CGG | + | chr1_3:41425589-41425608 | None:intergenic | 35.0% | |
| ! | TCATTGAATGCTCTACGTTT+TGG | + | chr1_3:41425672-41425691 | None:intergenic | 35.0% |
| ! | ATCCTTTTCTATCCAGGTTA+TGG | + | chr1_3:41425799-41425818 | None:intergenic | 35.0% |
| TAGAAAAGGATGCTTGTCTT+AGG | - | chr1_3:41425808-41425827 | Msa0118560:intron | 35.0% | |
| CAAAATGACACCATTAAGCT+TGG | + | chr1_3:41426084-41426103 | None:intergenic | 35.0% | |
| !!! | CAAGCTTAATGGTGTCATTT+TGG | - | chr1_3:41426082-41426101 | Msa0118560:intron | 35.0% |
| ACCTATTAGGCAATCACTAA+GGG | + | chr1_3:41426200-41426219 | None:intergenic | 35.0% | |
| TTAGTGATTGCCTAATAGGT+GGG | - | chr1_3:41426200-41426219 | Msa0118560:intron | 35.0% | |
| AGAGTAGAAGAAACGCATAT+GGG | + | chr1_3:41426247-41426266 | None:intergenic | 35.0% | |
| TGAAACGAAAATGCTTGTGA+CGG | - | chr1_3:41426276-41426295 | Msa0118560:intron | 35.0% | |
| ! | GAATGACTTACCATGGATTT+TGG | - | chr1_3:41426414-41426433 | Msa0118560:intron | 35.0% |
| !!! | ACTTACCATGGATTTTGGTT+TGG | - | chr1_3:41426419-41426438 | Msa0118560:intron | 35.0% |
| GAAAGAAAACAAGACATTGG+GGG | + | chr1_3:41426446-41426465 | None:intergenic | 35.0% | |
| AGATTCAGTAGTTTCTTCTG+AGG | + | chr1_3:41426597-41426616 | None:intergenic | 35.0% | |
| ! | ATTGGTGATCTTGCTAAACT+TGG | - | chr1_3:41426933-41426952 | Msa0118560:intron | 35.0% |
| CACCTGCAATTTAACAAAGA+TGG | + | chr1_3:41427237-41427256 | None:intergenic | 35.0% | |
| ATGATCATGCAATTCAAGTG+TGG | + | chr1_3:41427623-41427642 | None:intergenic | 35.0% | |
| GTGAAGTGGTTTAGTGAAAC+GGG | + | chr1_3:41422646-41422665 | None:intergenic | 40.0% | |
| AGTCTCATTAATCATGCGAG+AGG | + | chr1_3:41423175-41423194 | None:intergenic | 40.0% | |
| CTGTTTACTAGTGTAAGGTC+TGG | - | chr1_3:41423312-41423331 | Msa0118560:intron | 40.0% | |
| !! | GTTTTCGTTACCTGTTTTGG+TGG | - | chr1_3:41423428-41423447 | Msa0118560:intron | 40.0% |
| CAGCCTCTTGTGTAAAAAAC+AGG | - | chr1_3:41423560-41423579 | Msa0118560:intron | 40.0% | |
| !!! | CTCCCTGTTTTTTACACAAG+AGG | + | chr1_3:41423566-41423585 | None:intergenic | 40.0% |
| CTCTTGTGTAAAAAACAGGG+AGG | - | chr1_3:41423564-41423583 | Msa0118560:intron | 40.0% | |
| TGTAAAAAACAGGGAGGGTA+AGG | - | chr1_3:41423570-41423589 | Msa0118560:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr1_3:41423596-41423615 | Msa0118560:intron | 40.0% | |
| AGTCTGTATAAAGAGCAACC+CGG | + | chr1_3:41423662-41423681 | None:intergenic | 40.0% | |
| TCAAATGCAAGTAGTCAACG+AGG | - | chr1_3:41423725-41423744 | Msa0118560:intron | 40.0% | |
| CAAATGCAAGTAGTCAACGA+GGG | - | chr1_3:41423726-41423745 | Msa0118560:intron | 40.0% | |
| CTCAGATAAAGGTCTCATCA+TGG | - | chr1_3:41423848-41423867 | Msa0118560:intron | 40.0% | |
| CAGATAAAGGTCTCATCATG+GGG | - | chr1_3:41423850-41423869 | Msa0118560:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr1_3:41423596-41423615 | None:intergenic | 40.0% | |
| ACCAGAAATTGCCCATCATA+GGG | + | chr1_3:41424170-41424189 | None:intergenic | 40.0% | |
| ! | GGTTCCTTTGAAAAGAGGTT+AGG | + | chr1_3:41424300-41424319 | None:intergenic | 40.0% |
| ! | AACCTCTTTTCAAAGGAACC+GGG | - | chr1_3:41424300-41424319 | Msa0118560:intron | 40.0% |
| !! | TTGGCTTGCATGATCATATC+AGG | - | chr1_3:41424352-41424371 | Msa0118560:intron | 40.0% |
| ! | TATGTCAAGACTGTCACTTC+TGG | + | chr1_3:41424383-41424402 | None:intergenic | 40.0% |
| AATCATCTCAGGTGTCAAAC+TGG | + | chr1_3:41424416-41424435 | None:intergenic | 40.0% | |
| ! | GACACCTGAGATGATTTTAG+AGG | - | chr1_3:41424420-41424439 | Msa0118560:intron | 40.0% |
| !! | CTCACCTCTAAAATCATCTC+AGG | + | chr1_3:41424427-41424446 | None:intergenic | 40.0% |
| CATGGAACAACTTCTCATGA+AGG | - | chr1_3:41424596-41424615 | Msa0118560:intron | 40.0% | |
| TGCAATAAGTGCCTTTGTGA+AGG | + | chr1_3:41424960-41424979 | None:intergenic | 40.0% | |
| CAATGCATTTCGCATTGAGT+TGG | - | chr1_3:41425148-41425167 | Msa0118560:CDS | 40.0% | |
| GCCACAGTCATGATTATAGA+AGG | + | chr1_3:41425267-41425286 | None:intergenic | 40.0% | |
| AAGCACAGTTGTCTCAAAAC+TGG | - | chr1_3:41425365-41425384 | Msa0118560:intron | 40.0% | |
| ! | TCTATGCGTGTGTACTTTTC+TGG | + | chr1_3:41425445-41425464 | None:intergenic | 40.0% |
| GTCACAGTCTGACAACTTAA+TGG | - | chr1_3:41425730-41425749 | Msa0118560:intron | 40.0% | |
| CAGTCTGACAACTTAATGGA+AGG | - | chr1_3:41425734-41425753 | Msa0118560:intron | 40.0% | |
| ACAAAATCTGGTCCATAACC+TGG | - | chr1_3:41425784-41425803 | Msa0118560:intron | 40.0% | |
| GTCCATAACCTGGATAGAAA+AGG | - | chr1_3:41425794-41425813 | Msa0118560:intron | 40.0% | |
| ! | ACAAGCATCCTTTTCTATCC+AGG | + | chr1_3:41425805-41425824 | None:intergenic | 40.0% |
| !! | TAAAAGATGGGTTGGGAAAG+AGG | + | chr1_3:41425866-41425885 | None:intergenic | 40.0% |
| ! | ACGAAGCCTATAGTGTTGTT+TGG | - | chr1_3:41425971-41425990 | Msa0118560:intron | 40.0% |
| CATGCACCAAACAACACTAT+AGG | + | chr1_3:41425980-41425999 | None:intergenic | 40.0% | |
| GCTCTTTATGCCAAGCTTAA+TGG | - | chr1_3:41426071-41426090 | Msa0118560:intron | 40.0% | |
| TTGGTCGTTGAATTTGCATC+TGG | - | chr1_3:41426101-41426120 | Msa0118560:intron | 40.0% | |
| TGGTCGTTGAATTTGCATCT+GGG | - | chr1_3:41426102-41426121 | Msa0118560:intron | 40.0% | |
| GTTGAATTTGCATCTGGGAA+AGG | - | chr1_3:41426107-41426126 | Msa0118560:intron | 40.0% | |
| AATTTGCATCTGGGAAAGGT+TGG | - | chr1_3:41426111-41426130 | Msa0118560:intron | 40.0% | |
| TCCCTTAGTGATTGCCTAAT+AGG | - | chr1_3:41426196-41426215 | Msa0118560:intron | 40.0% | |
| CACCTATTAGGCAATCACTA+AGG | + | chr1_3:41426201-41426220 | None:intergenic | 40.0% | |
| CTTAGTGATTGCCTAATAGG+TGG | - | chr1_3:41426199-41426218 | Msa0118560:intron | 40.0% | |
| GAGAGTAGAAGAAACGCATA+TGG | + | chr1_3:41426248-41426267 | None:intergenic | 40.0% | |
| GTTAGCTGTAAGGAGCTTAA+AGG | - | chr1_3:41426826-41426845 | Msa0118560:intron | 40.0% | |
| TTCTGTTATCGCGTTGTGAT+TGG | - | chr1_3:41426915-41426934 | Msa0118560:intron | 40.0% | |
| TAGAAGATAGCAGACCTAGA+TGG | - | chr1_3:41427156-41427175 | Msa0118560:intron | 40.0% | |
| CGACGAGAACTATTGTTTCA+AGG | - | chr1_3:41427304-41427323 | Msa0118560:intron | 40.0% | |
| TGAAACGGGAAGGAGCTAAA+CGG | + | chr1_3:41422632-41422651 | None:intergenic | 45.0% | |
| AGTGGTTTAGTGAAACGGGA+AGG | + | chr1_3:41422642-41422661 | None:intergenic | 45.0% | |
| AAAAGCGGGATGAGAGGTTA+GGG | + | chr1_3:41422860-41422879 | None:intergenic | 45.0% | |
| AAAAATGCACCTGAGTGCGT+TGG | + | chr1_3:41422899-41422918 | None:intergenic | 45.0% | |
| TTGCTCTCATCTCAACATCG+TGG | + | chr1_3:41423054-41423073 | None:intergenic | 45.0% | |
| GTCTGATTCAGACAGTACAG+TGG | - | chr1_3:41423359-41423378 | Msa0118560:intron | 45.0% | |
| ACAATGATGAGGGGTAACCT+TGG | - | chr1_3:41423479-41423498 | Msa0118560:intron | 45.0% | |
| TCATGTGACTGGAAAGTCAC+AGG | - | chr1_3:41423522-41423541 | Msa0118560:intron | 45.0% | |
| AAAGTCACAGGTTCAAGTCC+TGG | - | chr1_3:41423534-41423553 | Msa0118560:intron | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr1_3:41423555-41423574 | None:intergenic | 45.0% |
| GCTGCGTACAATACACCAAA+TGG | - | chr1_3:41423592-41423611 | Msa0118560:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr1_3:41423595-41423614 | Msa0118560:intron | 45.0% | |
| CTAAAGCTCCCAATTAGGCA+GGG | + | chr1_3:41423635-41423654 | None:intergenic | 45.0% | |
| ACTAAAGCTCCCAATTAGGC+AGG | + | chr1_3:41423636-41423655 | None:intergenic | 45.0% | |
| GTGCACTAAAGCTCCCAATT+AGG | + | chr1_3:41423640-41423659 | None:intergenic | 45.0% | |
| ! | AATTGGGAGCTTTAGTGCAC+CGG | - | chr1_3:41423640-41423659 | Msa0118560:intron | 45.0% |
| !! | TGTGGTGTCTCTGAGATGTA+AGG | - | chr1_3:41423776-41423795 | Msa0118560:intron | 45.0% |
| TAAAGGTCTCATCATGGGGT+TGG | - | chr1_3:41423854-41423873 | Msa0118560:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | chr1_3:41423595-41423614 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | + | chr1_3:41423592-41423611 | None:intergenic | 45.0% | |
| ! | TAACACAAGAGGCTGTTTCC+AGG | - | chr1_3:41424129-41424148 | Msa0118560:intron | 45.0% |
| ! | AACACAAGAGGCTGTTTCCA+GGG | - | chr1_3:41424130-41424149 | Msa0118560:intron | 45.0% |
| GGGCTACACATAATAATCCC+TGG | + | chr1_3:41424150-41424169 | None:intergenic | 45.0% | |
| GACCAGAAATTGCCCATCAT+AGG | + | chr1_3:41424171-41424190 | None:intergenic | 45.0% | |
| !! | ATGATGGGCAATTTCTGGTC+TGG | - | chr1_3:41424171-41424190 | Msa0118560:intron | 45.0% |
| ! | ACCTCTTTTCAAAGGAACCG+GGG | - | chr1_3:41424301-41424320 | Msa0118560:intron | 45.0% |
| GGTAGGCATCCGAGAAAAAA+GGG | + | chr1_3:41424752-41424771 | None:intergenic | 45.0% | |
| TGGTAGGCATCCGAGAAAAA+AGG | + | chr1_3:41424753-41424772 | None:intergenic | 45.0% | |
| !! | AAGAGGGGTTCAACTTGCTA+AGG | - | chr1_3:41424930-41424949 | Msa0118560:intron | 45.0% |
| GCTAAGGAATGCCTTCACAA+AGG | - | chr1_3:41424946-41424965 | Msa0118560:intron | 45.0% | |
| AGCATTTCCAACAGCAGCTT+CGG | + | chr1_3:41425228-41425247 | None:intergenic | 45.0% | |
| ACCTTCATCAATGTCACGGA+GGG | + | chr1_3:41425585-41425604 | None:intergenic | 45.0% | |
| AACCTTCATCAATGTCACGG+AGG | + | chr1_3:41425586-41425605 | None:intergenic | 45.0% | |
| GTGCTTTGCTGCCAATCTTT+GGG | - | chr1_3:41426040-41426059 | Msa0118560:intron | 45.0% | |
| AGCGTAACGAACCCAAAGAT+TGG | + | chr1_3:41426054-41426073 | None:intergenic | 45.0% | |
| CTTTAGTGTGACTCCTCTAG+TGG | - | chr1_3:41426146-41426165 | Msa0118560:intron | 45.0% | |
| ATGCAGCTAACCCACCTATT+AGG | + | chr1_3:41426213-41426232 | None:intergenic | 45.0% | |
| ! | CAGTCTGGGATTTACTTGGT+GGG | - | chr1_3:41426323-41426342 | Msa0118560:intron | 45.0% |
| ACTCTTCACTAGCTAAAGCG+AGG | + | chr1_3:41426654-41426673 | None:intergenic | 45.0% | |
| TCAGTACCATGCTACCATCT+AGG | + | chr1_3:41427173-41427192 | None:intergenic | 45.0% | |
| CTGCTATATTGATGCCAGTC+TGG | - | chr1_3:41427270-41427289 | Msa0118560:intron | 45.0% | |
| AATTGTAGTAGGTGCTCGCA+TGG | - | chr1_3:41427343-41427362 | Msa0118560:intron | 45.0% | |
| !!! | ATTTTTATCTATTTATATAT+TGG | - | chr1_3:41426468-41426487 | Msa0118560:intron | 5.0% |
| TCGGTGAGAGAGACTCGAAT+CGG | + | chr1_3:41422705-41422724 | None:intergenic | 50.0% | |
| TGAGATCACCGGTAGGGATT+GGG | + | chr1_3:41422758-41422777 | None:intergenic | 50.0% | |
| ATGAGATCACCGGTAGGGAT+TGG | + | chr1_3:41422759-41422778 | None:intergenic | 50.0% | |
| TGTGGATGAGATCACCGGTA+GGG | + | chr1_3:41422764-41422783 | None:intergenic | 50.0% | |
| AAGAGTAGCAAACGGGGTGA+GGG | + | chr1_3:41422824-41422843 | None:intergenic | 50.0% | |
| CAAAAGCGGGATGAGAGGTT+AGG | + | chr1_3:41422861-41422880 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr1_3:41423499-41423518 | None:intergenic | 50.0% | |
| ! | ATTGGGAGCTTTAGTGCACC+GGG | - | chr1_3:41423641-41423660 | Msa0118560:intron | 50.0% |
| TTCCTGGACGTTGTGTATGC+TGG | + | chr1_3:41424064-41424083 | None:intergenic | 50.0% | |
| AGCATACACAACGTCCAGGA+AGG | - | chr1_3:41424063-41424082 | Msa0118560:intron | 50.0% | |
| GCATACACAACGTCCAGGAA+GGG | - | chr1_3:41424064-41424083 | Msa0118560:intron | 50.0% | |
| CATACACAACGTCCAGGAAG+GGG | - | chr1_3:41424065-41424084 | Msa0118560:intron | 50.0% | |
| !! | GCCCTATGATGGGCAATTTC+TGG | - | chr1_3:41424166-41424185 | Msa0118560:intron | 50.0% |
| ! | ACCCCGGTTCCTTTGAAAAG+AGG | + | chr1_3:41424305-41424324 | None:intergenic | 50.0% |
| ! | TCCCTTTCTGGTAAAGCGGT+TGG | - | chr1_3:41424333-41424352 | Msa0118560:intron | 50.0% |
| GCCAACCGCTTTACCAGAAA+GGG | + | chr1_3:41424337-41424356 | None:intergenic | 50.0% | |
| AGCCAACCGCTTTACCAGAA+AGG | + | chr1_3:41424338-41424357 | None:intergenic | 50.0% | |
| ATCTCAGGTGTCAAACTGGC+AGG | + | chr1_3:41424412-41424431 | None:intergenic | 50.0% | |
| !! | GCATTTCGCATTGAGTTGGC+TGG | - | chr1_3:41425152-41425171 | Msa0118560:CDS | 50.0% |
| !! | TTTCGCATTGAGTTGGCTGG+TGG | - | chr1_3:41425155-41425174 | Msa0118560:intron | 50.0% |
| ! | ATTGGCAGCAAAGCACCCAA+GGG | + | chr1_3:41426036-41426055 | None:intergenic | 50.0% |
| GGTGCTTTGCTGCCAATCTT+TGG | - | chr1_3:41426039-41426058 | Msa0118560:intron | 50.0% | |
| TCAAGTGCAGAGACCACTAG+AGG | + | chr1_3:41426162-41426181 | None:intergenic | 50.0% | |
| TTGCTTTCGTACCTCCAGTC+TGG | - | chr1_3:41426308-41426327 | Msa0118560:intron | 50.0% | |
| TGCTTTCGTACCTCCAGTCT+GGG | - | chr1_3:41426309-41426328 | Msa0118560:intron | 50.0% | |
| CCAAGTAAATCCCAGACTGG+AGG | + | chr1_3:41426322-41426341 | None:intergenic | 50.0% | |
| ! | CCTCCAGTCTGGGATTTACT+TGG | - | chr1_3:41426319-41426338 | Msa0118560:intron | 50.0% |
| CCACCAAGTAAATCCCAGAC+TGG | + | chr1_3:41426325-41426344 | None:intergenic | 50.0% | |
| ! | CCAGTCTGGGATTTACTTGG+TGG | - | chr1_3:41426322-41426341 | Msa0118560:intron | 50.0% |
| GGGGACCAAACCAAAATCCA+TGG | + | chr1_3:41426427-41426446 | None:intergenic | 50.0% | |
| AGCAGACCTAGATGGTAGCA+TGG | - | chr1_3:41427164-41427183 | Msa0118560:intron | 50.0% | |
| ! | ATAGTTCTCGTCGAGCATCG+CGG | + | chr1_3:41427297-41427316 | None:intergenic | 50.0% |
| AGAGAGACTCGAATCGGAGG+TGG | + | chr1_3:41422699-41422718 | None:intergenic | 55.0% | |
| GTGAGAGAGACTCGAATCGG+AGG | + | chr1_3:41422702-41422721 | None:intergenic | 55.0% | |
| GATTGGGCGAGTTGCGAAGA+CGG | + | chr1_3:41422742-41422761 | None:intergenic | 55.0% | |
| GTGTGGATGAGATCACCGGT+AGG | + | chr1_3:41422765-41422784 | None:intergenic | 55.0% | |
| AGAGTAGCAAACGGGGTGAG+GGG | + | chr1_3:41422823-41422842 | None:intergenic | 55.0% | |
| CAAGAGTAGCAAACGGGGTG+AGG | + | chr1_3:41422825-41422844 | None:intergenic | 55.0% | |
| CGAGGCAAGAGTAGCAAACG+GGG | + | chr1_3:41422830-41422849 | None:intergenic | 55.0% | |
| GCGAGGCAAGAGTAGCAAAC+GGG | + | chr1_3:41422831-41422850 | None:intergenic | 55.0% | |
| GGCGAGGCAAGAGTAGCAAA+CGG | + | chr1_3:41422832-41422851 | None:intergenic | 55.0% | |
| TTTGCTACTCTTGCCTCGCC+AGG | - | chr1_3:41422832-41422851 | Msa0118560:three_prime_UTR | 55.0% | |
| GGGAACAAAAGCGGGATGAG+AGG | + | chr1_3:41422866-41422885 | None:intergenic | 55.0% | |
| GCAAGGGTGGGAACAAAAGC+GGG | + | chr1_3:41422874-41422893 | None:intergenic | 55.0% | |
| GGCAAGGGTGGGAACAAAAG+CGG | + | chr1_3:41422875-41422894 | None:intergenic | 55.0% | |
| AATGCACCTGAGTGCGTTGG+TGG | + | chr1_3:41422896-41422915 | None:intergenic | 55.0% | |
| AATTAGGCAGGGTCCGGGAA+GGG | + | chr1_3:41423624-41423643 | None:intergenic | 55.0% | |
| TTCCCGGACCCTGCCTAATT+GGG | - | chr1_3:41423624-41423643 | Msa0118560:intron | 55.0% | |
| ! | TGCTGGAGCTTTAGTGCGCT+AGG | + | chr1_3:41424047-41424066 | None:intergenic | 55.0% |
| CTCCAGCATACACAACGTCC+AGG | - | chr1_3:41424059-41424078 | Msa0118560:intron | 55.0% | |
| GTAGAAGCCGAAGCTGCTGT+TGG | - | chr1_3:41425218-41425237 | Msa0118560:intron | 55.0% | |
| GCCCTCCGTGACATTGATGA+AGG | - | chr1_3:41425581-41425600 | Msa0118560:intron | 55.0% | |
| TAGACAGTGCAGCCACCCTT+GGG | - | chr1_3:41426018-41426037 | Msa0118560:intron | 55.0% | |
| ! | GATTGGCAGCAAAGCACCCA+AGG | + | chr1_3:41426037-41426056 | None:intergenic | 55.0% |
| AATCGGAGGTGGTGAGGTGG+TGG | + | chr1_3:41422688-41422707 | None:intergenic | 60.0% | |
| TCGAATCGGAGGTGGTGAGG+TGG | + | chr1_3:41422691-41422710 | None:intergenic | 60.0% | |
| GACTCGAATCGGAGGTGGTG+AGG | + | chr1_3:41422694-41422713 | None:intergenic | 60.0% | |
| !! | GTCTCTCTCACCGACTCCGT+AGG | - | chr1_3:41422711-41422730 | Msa0118560:three_prime_UTR | 60.0% |
| GCAACTCGCCCAATCCCTAC+CGG | - | chr1_3:41422747-41422766 | Msa0118560:three_prime_UTR | 60.0% | |
| GGCGGTGTGGATGAGATCAC+CGG | + | chr1_3:41422769-41422788 | None:intergenic | 60.0% | |
| GGAAGGTGAAGGGTGGCAGA+CGG | + | chr1_3:41422799-41422818 | None:intergenic | 60.0% | |
| GGTGAGGGGAGGAAGGTGAA+GGG | + | chr1_3:41422809-41422828 | None:intergenic | 60.0% | |
| GGATGAGAGGTTAGGGAGCC+TGG | + | chr1_3:41422853-41422872 | None:intergenic | 60.0% | |
| !! | AGTGCGTTGGTGGCAAGGGT+GGG | + | chr1_3:41422886-41422905 | None:intergenic | 60.0% |
| !! | CCTGAGTGCGTTGGTGGCAA+GGG | + | chr1_3:41422890-41422909 | None:intergenic | 60.0% |
| !! | ACCTGAGTGCGTTGGTGGCA+AGG | + | chr1_3:41422891-41422910 | None:intergenic | 60.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | - | chr1_3:41423488-41423507 | Msa0118560:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr1_3:41423608-41423627 | Msa0118560:intron | 60.0% |
| ATTAGGCAGGGTCCGGGAAG+GGG | + | chr1_3:41423623-41423642 | None:intergenic | 60.0% | |
| CAATTAGGCAGGGTCCGGGA+AGG | + | chr1_3:41423625-41423644 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCCTAAT+TGG | - | chr1_3:41423623-41423642 | Msa0118560:intron | 60.0% | |
| CTCCCAATTAGGCAGGGTCC+GGG | + | chr1_3:41423629-41423648 | None:intergenic | 60.0% | |
| GCTCCCAATTAGGCAGGGTC+CGG | + | chr1_3:41423630-41423649 | None:intergenic | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+TGG | + | chr1_3:41423608-41423627 | None:intergenic | 60.0% |
| CAGGAAGGGGTCCCACCATT+TGG | - | chr1_3:41424078-41424097 | Msa0118560:intron | 60.0% | |
| !! | CGCATTGAGTTGGCTGGTGG+TGG | - | chr1_3:41425158-41425177 | Msa0118560:intron | 60.0% |
| CTAGACAGTGCAGCCACCCT+TGG | - | chr1_3:41426017-41426036 | Msa0118560:intron | 60.0% | |
| TGCGAAGACGGCGCGACCTA+CGG | + | chr1_3:41422730-41422749 | None:intergenic | 65.0% | |
| AGGTGAAGGGTGGCAGACGG+CGG | + | chr1_3:41422796-41422815 | None:intergenic | 65.0% | |
| GAGGGGAGGAAGGTGAAGGG+TGG | + | chr1_3:41422806-41422825 | None:intergenic | 65.0% | |
| GGGTGAGGGGAGGAAGGTGA+AGG | + | chr1_3:41422810-41422829 | None:intergenic | 65.0% | |
| CAAACGGGGTGAGGGGAGGA+AGG | + | chr1_3:41422816-41422835 | None:intergenic | 65.0% | |
| GTAGCAAACGGGGTGAGGGG+AGG | + | chr1_3:41422820-41422839 | None:intergenic | 65.0% | |
| AGAGGTTAGGGAGCCTGGCG+AGG | + | chr1_3:41422848-41422867 | None:intergenic | 65.0% | |
| !! | GAGTGCGTTGGTGGCAAGGG+TGG | + | chr1_3:41422887-41422906 | None:intergenic | 65.0% |
| CCCTTGCCACCAACGCACTC+AGG | - | chr1_3:41422887-41422906 | Msa0118560:three_prime_UTR | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr1_3:41423610-41423629 | None:intergenic | 65.0% | |
| ! | GGCAGCAAAGCACCCAAGGG+TGG | + | chr1_3:41426033-41426052 | None:intergenic | 65.0% |
| ! | TCGAGCATCGCGGTCCAGAC+TGG | + | chr1_3:41427287-41427306 | None:intergenic | 65.0% |
| GACGGCGCGACCTACGGAGT+CGG | + | chr1_3:41422724-41422743 | None:intergenic | 70.0% | |
| ! | AGGGTGGCAGACGGCGGGTT+CGG | + | chr1_3:41422790-41422809 | None:intergenic | 70.0% |
| GGTGAAGGGTGGCAGACGGC+GGG | + | chr1_3:41422795-41422814 | None:intergenic | 70.0% | |
| ! | AGACGGCGGGTTCGGCGGTG+TGG | + | chr1_3:41422782-41422801 | None:intergenic | 75.0% |
| ! | GTGGCAGACGGCGGGTTCGG+CGG | + | chr1_3:41422787-41422806 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 41422549 | 41427749 | 41422549 | ID=Msa0118560;Name=Msa0118560 |
| chr1_3 | mRNA | 41422549 | 41427749 | 41422549 | ID=Msa0118560-mRNA-1;Parent=Msa0118560;Name=Msa0118560-mRNA-1;_AED=0.09;_eAED=0.09;_QI=57|0.66|0.71|1|0.83|1|7|377|310 |
| chr1_3 | exon | 41422549 | 41423044 | 41422549 | ID=Msa0118560-mRNA-1:exon:12571;Parent=Msa0118560-mRNA-1 |
| chr1_3 | exon | 41424696 | 41424767 | 41424696 | ID=Msa0118560-mRNA-1:exon:12570;Parent=Msa0118560-mRNA-1 |
| chr1_3 | exon | 41425017 | 41425171 | 41425017 | ID=Msa0118560-mRNA-1:exon:12569;Parent=Msa0118560-mRNA-1 |
| chr1_3 | exon | 41425272 | 41425372 | 41425272 | ID=Msa0118560-mRNA-1:exon:12568;Parent=Msa0118560-mRNA-1 |
| chr1_3 | exon | 41425857 | 41425983 | 41425857 | ID=Msa0118560-mRNA-1:exon:12567;Parent=Msa0118560-mRNA-1 |
| chr1_3 | exon | 41427197 | 41427252 | 41427197 | ID=Msa0118560-mRNA-1:exon:12566;Parent=Msa0118560-mRNA-1 |
| chr1_3 | exon | 41427390 | 41427749 | 41427390 | ID=Msa0118560-mRNA-1:exon:12565;Parent=Msa0118560-mRNA-1 |
| chr1_3 | five_prime_UTR | 41427693 | 41427749 | 41427693 | ID=Msa0118560-mRNA-1:five_prime_utr;Parent=Msa0118560-mRNA-1 |
| chr1_3 | CDS | 41427390 | 41427692 | 41427390 | ID=Msa0118560-mRNA-1:cds;Parent=Msa0118560-mRNA-1 |
| chr1_3 | CDS | 41427197 | 41427252 | 41427197 | ID=Msa0118560-mRNA-1:cds;Parent=Msa0118560-mRNA-1 |
| chr1_3 | CDS | 41425857 | 41425983 | 41425857 | ID=Msa0118560-mRNA-1:cds;Parent=Msa0118560-mRNA-1 |
| chr1_3 | CDS | 41425272 | 41425372 | 41425272 | ID=Msa0118560-mRNA-1:cds;Parent=Msa0118560-mRNA-1 |
| chr1_3 | CDS | 41425017 | 41425171 | 41425017 | ID=Msa0118560-mRNA-1:cds;Parent=Msa0118560-mRNA-1 |
| chr1_3 | CDS | 41424696 | 41424767 | 41424696 | ID=Msa0118560-mRNA-1:cds;Parent=Msa0118560-mRNA-1 |
| chr1_3 | CDS | 41422926 | 41423044 | 41422926 | ID=Msa0118560-mRNA-1:cds;Parent=Msa0118560-mRNA-1 |
| chr1_3 | three_prime_UTR | 41422549 | 41422925 | 41422549 | ID=Msa0118560-mRNA-1:three_prime_utr;Parent=Msa0118560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
