Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072500 | XP_003590386.2 | 97.275 | 367 | 7 | 3 | 1 | 365 | 1 | 366 | 0.0 | 712 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072500 | sp|Q8VYJ2|AHL1_ARATH | 48.548 | 241 | 109 | 5 | 69 | 303 | 89 | 320 | 1.00e-60 | 202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072500 | A0A396JTT3 | 97.275 | 367 | 7 | 3 | 1 | 365 | 1 | 366 | 0.0 | 712 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025010 | Msa0072500 | 0.899689 | 1.545381e-77 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072500 | MtrunA17_Chr1g0179461 | 97.275 | 367 | 7 | 3 | 1 | 365 | 1 | 366 | 0.0 | 712 |
| Msa0072500 | MtrunA17_Chr7g0245841 | 43.598 | 328 | 146 | 10 | 47 | 364 | 35 | 333 | 2.32e-59 | 195 |
| Msa0072500 | MtrunA17_Chr8g0349091 | 50.472 | 212 | 95 | 3 | 69 | 280 | 89 | 290 | 1.15e-52 | 177 |
| Msa0072500 | MtrunA17_Chr8g0351761 | 40.252 | 318 | 146 | 8 | 64 | 364 | 66 | 356 | 4.12e-48 | 166 |
| Msa0072500 | MtrunA17_Chr4g0056761 | 48.261 | 230 | 109 | 5 | 58 | 283 | 61 | 284 | 5.87e-47 | 162 |
| Msa0072500 | MtrunA17_Chr4g0054661 | 42.146 | 261 | 123 | 8 | 61 | 307 | 65 | 311 | 3.26e-46 | 160 |
| Msa0072500 | MtrunA17_Chr1g0188211 | 40.645 | 310 | 143 | 11 | 69 | 355 | 49 | 340 | 4.57e-46 | 160 |
| Msa0072500 | MtrunA17_Chr5g0397551 | 45.631 | 206 | 97 | 4 | 69 | 273 | 70 | 261 | 4.42e-45 | 157 |
| Msa0072500 | MtrunA17_Chr8g0386741 | 43.231 | 229 | 113 | 5 | 69 | 288 | 97 | 317 | 7.79e-43 | 152 |
| Msa0072500 | MtrunA17_Chr7g0247431 | 43.814 | 194 | 99 | 3 | 69 | 261 | 89 | 273 | 1.15e-42 | 151 |
| Msa0072500 | MtrunA17_Chr5g0398621 | 40.179 | 224 | 105 | 5 | 68 | 287 | 45 | 243 | 2.05e-40 | 143 |
| Msa0072500 | MtrunA17_Chr6g0476061 | 40.385 | 260 | 122 | 8 | 69 | 313 | 51 | 292 | 5.67e-36 | 133 |
| Msa0072500 | MtrunA17_Chr1g0190011 | 37.500 | 224 | 98 | 6 | 53 | 260 | 25 | 222 | 1.87e-30 | 118 |
| Msa0072500 | MtrunA17_Chr4g0027371 | 45.399 | 163 | 77 | 5 | 133 | 292 | 8 | 161 | 2.47e-30 | 116 |
| Msa0072500 | MtrunA17_Chr4g0027351 | 54.237 | 118 | 50 | 3 | 139 | 255 | 14 | 128 | 1.08e-27 | 105 |
| Msa0072500 | MtrunA17_Chr7g0274821 | 41.379 | 203 | 89 | 5 | 69 | 261 | 74 | 256 | 1.30e-27 | 111 |
| Msa0072500 | MtrunA17_Chr1g0165101 | 34.066 | 273 | 122 | 9 | 16 | 266 | 48 | 284 | 3.02e-27 | 110 |
| Msa0072500 | MtrunA17_Chr4g0027331 | 52.101 | 119 | 53 | 3 | 139 | 254 | 14 | 131 | 3.65e-26 | 102 |
| Msa0072500 | MtrunA17_Chr3g0133051 | 34.109 | 129 | 85 | 0 | 144 | 272 | 101 | 229 | 2.03e-20 | 90.1 |
| Msa0072500 | MtrunA17_Chr5g0427311 | 34.109 | 129 | 82 | 2 | 145 | 272 | 81 | 207 | 1.31e-19 | 87.0 |
| Msa0072500 | MtrunA17_Chr3g0086021 | 31.373 | 204 | 124 | 5 | 75 | 275 | 46 | 236 | 5.59e-19 | 86.3 |
| Msa0072500 | MtrunA17_Chr6g0476241 | 37.436 | 195 | 94 | 10 | 69 | 261 | 120 | 288 | 6.56e-19 | 86.3 |
| Msa0072500 | MtrunA17_Chr4g0027301 | 40.800 | 125 | 70 | 3 | 134 | 255 | 16 | 139 | 1.56e-18 | 81.3 |
| Msa0072500 | MtrunA17_Chr5g0417581 | 41.985 | 131 | 59 | 4 | 145 | 260 | 20 | 148 | 1.94e-18 | 82.8 |
| Msa0072500 | MtrunA17_Chr3g0112131 | 40.800 | 125 | 70 | 2 | 147 | 271 | 109 | 229 | 1.01e-17 | 82.8 |
| Msa0072500 | MtrunA17_Chr5g0398531 | 41.600 | 125 | 69 | 2 | 147 | 271 | 130 | 250 | 5.30e-16 | 78.2 |
| Msa0072500 | MtrunA17_Chr4g0054651 | 39.259 | 135 | 78 | 2 | 147 | 281 | 106 | 236 | 1.49e-15 | 76.3 |
| Msa0072500 | MtrunA17_Chr1g0168121 | 39.516 | 124 | 71 | 2 | 147 | 270 | 72 | 191 | 3.15e-15 | 75.1 |
| Msa0072500 | MtrunA17_Chr5g0443311 | 44.444 | 126 | 64 | 3 | 147 | 271 | 81 | 201 | 3.66e-15 | 74.7 |
| Msa0072500 | MtrunA17_Chr8g0351651 | 41.600 | 125 | 69 | 2 | 147 | 271 | 116 | 236 | 4.97e-15 | 75.1 |
| Msa0072500 | MtrunA17_Chr7g0250031 | 41.935 | 124 | 68 | 2 | 147 | 270 | 87 | 206 | 1.35e-14 | 73.2 |
| Msa0072500 | MtrunA17_Chr1g0190051 | 44.348 | 115 | 58 | 3 | 147 | 260 | 104 | 213 | 7.51e-13 | 68.6 |
| Msa0072500 | MtrunA17_Chr5g0435681 | 38.261 | 115 | 67 | 2 | 148 | 262 | 120 | 230 | 5.97e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072500 | AT4G12080.1 | 48.548 | 241 | 109 | 5 | 69 | 303 | 89 | 320 | 1.02e-61 | 202 |
| Msa0072500 | AT2G45850.1 | 46.226 | 212 | 102 | 3 | 69 | 280 | 98 | 297 | 3.62e-54 | 182 |
| Msa0072500 | AT2G45850.2 | 46.226 | 212 | 102 | 3 | 69 | 280 | 98 | 297 | 3.62e-54 | 182 |
| Msa0072500 | AT4G25320.1 | 45.833 | 240 | 108 | 6 | 69 | 295 | 86 | 316 | 4.82e-54 | 183 |
| Msa0072500 | AT5G62260.1 | 47.805 | 205 | 91 | 5 | 69 | 261 | 76 | 276 | 1.13e-52 | 180 |
| Msa0072500 | AT5G62260.3 | 47.805 | 205 | 91 | 5 | 69 | 261 | 76 | 276 | 1.13e-52 | 180 |
| Msa0072500 | AT2G33620.1 | 49.038 | 208 | 72 | 6 | 69 | 264 | 97 | 282 | 9.52e-51 | 173 |
| Msa0072500 | AT2G33620.4 | 49.038 | 208 | 72 | 6 | 69 | 264 | 97 | 282 | 9.52e-51 | 173 |
| Msa0072500 | AT2G33620.2 | 49.038 | 208 | 72 | 6 | 69 | 264 | 97 | 282 | 9.52e-51 | 173 |
| Msa0072500 | AT2G33620.3 | 49.038 | 208 | 72 | 6 | 69 | 264 | 97 | 282 | 9.52e-51 | 173 |
| Msa0072500 | AT5G62260.2 | 47.236 | 199 | 89 | 5 | 69 | 255 | 76 | 270 | 1.51e-49 | 168 |
| Msa0072500 | AT4G22770.2 | 48.889 | 225 | 96 | 7 | 69 | 283 | 72 | 287 | 2.31e-49 | 169 |
| Msa0072500 | AT4G22770.1 | 48.889 | 225 | 96 | 7 | 69 | 283 | 72 | 287 | 2.31e-49 | 169 |
| Msa0072500 | AT4G00200.2 | 47.809 | 251 | 94 | 5 | 43 | 282 | 36 | 260 | 2.75e-49 | 168 |
| Msa0072500 | AT4G00200.1 | 47.809 | 251 | 94 | 5 | 43 | 282 | 36 | 260 | 2.75e-49 | 168 |
| Msa0072500 | AT2G45850.3 | 48.128 | 187 | 85 | 3 | 69 | 255 | 98 | 272 | 5.13e-49 | 166 |
| Msa0072500 | AT1G63470.1 | 46.667 | 195 | 95 | 4 | 69 | 261 | 105 | 292 | 3.79e-46 | 162 |
| Msa0072500 | AT5G51590.1 | 44.737 | 228 | 82 | 6 | 69 | 262 | 78 | 295 | 7.54e-45 | 159 |
| Msa0072500 | AT3G61310.1 | 44.860 | 214 | 95 | 4 | 69 | 277 | 101 | 296 | 3.89e-44 | 156 |
| Msa0072500 | AT1G63480.5 | 41.315 | 213 | 103 | 5 | 69 | 275 | 93 | 289 | 3.21e-43 | 154 |
| Msa0072500 | AT1G63480.7 | 41.315 | 213 | 103 | 5 | 69 | 275 | 93 | 289 | 3.21e-43 | 154 |
| Msa0072500 | AT1G63480.4 | 41.315 | 213 | 103 | 5 | 69 | 275 | 93 | 289 | 3.21e-43 | 154 |
| Msa0072500 | AT1G63480.3 | 41.315 | 213 | 103 | 5 | 69 | 275 | 93 | 289 | 3.21e-43 | 154 |
| Msa0072500 | AT1G63480.6 | 41.315 | 213 | 103 | 5 | 69 | 275 | 93 | 289 | 3.21e-43 | 154 |
| Msa0072500 | AT1G63480.2 | 41.315 | 213 | 103 | 5 | 69 | 275 | 99 | 295 | 3.63e-43 | 154 |
| Msa0072500 | AT1G63480.1 | 41.315 | 213 | 103 | 5 | 69 | 275 | 99 | 295 | 3.63e-43 | 154 |
| Msa0072500 | AT4G17950.1 | 39.916 | 238 | 114 | 5 | 69 | 285 | 131 | 360 | 2.03e-40 | 148 |
| Msa0072500 | AT5G46640.1 | 41.014 | 217 | 96 | 5 | 69 | 268 | 102 | 303 | 2.83e-35 | 133 |
| Msa0072500 | AT3G04590.1 | 41.709 | 199 | 89 | 5 | 69 | 260 | 105 | 283 | 4.90e-34 | 128 |
| Msa0072500 | AT3G04590.2 | 41.709 | 199 | 89 | 5 | 69 | 260 | 105 | 283 | 3.91e-33 | 127 |
| Msa0072500 | AT2G36560.1 | 35.577 | 208 | 114 | 7 | 143 | 346 | 104 | 295 | 1.83e-26 | 110 |
| Msa0072500 | AT3G60870.1 | 41.026 | 117 | 63 | 2 | 144 | 260 | 86 | 196 | 3.00e-20 | 89.7 |
| Msa0072500 | AT2G45430.1 | 35.377 | 212 | 127 | 4 | 74 | 282 | 50 | 254 | 1.98e-18 | 85.5 |
| Msa0072500 | AT1G14490.2 | 34.559 | 136 | 86 | 2 | 144 | 276 | 49 | 184 | 1.82e-17 | 80.9 |
| Msa0072500 | AT1G14490.1 | 34.815 | 135 | 85 | 2 | 145 | 276 | 31 | 165 | 2.92e-17 | 80.1 |
| Msa0072500 | AT4G12050.1 | 40.000 | 125 | 72 | 1 | 147 | 271 | 148 | 269 | 5.66e-17 | 81.6 |
| Msa0072500 | AT5G49700.1 | 36.585 | 123 | 69 | 3 | 144 | 260 | 83 | 202 | 9.09e-17 | 80.1 |
| Msa0072500 | AT2G42940.1 | 43.966 | 116 | 59 | 3 | 147 | 261 | 83 | 193 | 8.89e-16 | 76.6 |
| Msa0072500 | AT1G76500.1 | 34.586 | 133 | 76 | 2 | 147 | 271 | 102 | 231 | 3.91e-15 | 75.5 |
| Msa0072500 | AT4G22810.1 | 39.370 | 127 | 72 | 2 | 147 | 271 | 135 | 258 | 4.44e-15 | 75.9 |
| Msa0072500 | AT5G28590.1 | 40.678 | 118 | 43 | 3 | 144 | 260 | 30 | 121 | 2.68e-14 | 71.6 |
| Msa0072500 | AT2G35270.1 | 37.594 | 133 | 79 | 2 | 147 | 279 | 108 | 236 | 3.61e-13 | 69.7 |
| Msa0072500 | AT3G55560.1 | 39.130 | 115 | 67 | 2 | 147 | 261 | 118 | 229 | 5.13e-13 | 69.3 |
| Msa0072500 | AT4G35390.1 | 38.261 | 115 | 67 | 2 | 147 | 260 | 93 | 204 | 8.48e-13 | 68.6 |
| Msa0072500 | AT4G17800.1 | 38.889 | 126 | 73 | 2 | 147 | 272 | 112 | 233 | 1.47e-12 | 67.8 |
| Msa0072500 | AT3G04570.1 | 39.695 | 131 | 69 | 2 | 147 | 270 | 110 | 237 | 3.26e-12 | 67.0 |
| Msa0072500 | AT4G14465.1 | 35.433 | 127 | 78 | 2 | 147 | 273 | 97 | 219 | 2.13e-11 | 64.3 |
Find 93 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTCAAGCTTTCCATTTC+TGG | 0.001701 | 1_2:-45499526 | Msa0072500:five_prime_UTR |
| CGTGCTGCTGTGACTATTTC+TGG | 0.182840 | 1_2:+45496354 | None:intergenic |
| TCTTCTTGTAACTTGGATTT+AGG | 0.193712 | 1_2:+45499202 | None:intergenic |
| CGCCATTTGAATACTCTTCT+TGG | 0.220102 | 1_2:-45499588 | Msa0072500:five_prime_UTR |
| ATTAGAAAGCAGTATTATTA+TGG | 0.265227 | 1_2:-45495547 | Msa0072500:three_prime_UTR |
| AACAACAACACCAGGAAGTT+TGG | 0.299197 | 1_2:-45499280 | Msa0072500:CDS |
| TGCTTCAATTCTTCTCTTAG+TGG | 0.311696 | 1_2:-45499611 | Msa0072500:five_prime_UTR |
| AACAGTATTGTAACTACTAT+TGG | 0.316379 | 1_2:-45499342 | Msa0072500:CDS |
| TTCTTTGCCTGATGAATAGA+TGG | 0.316756 | 1_2:-45496136 | Msa0072500:exon |
| ACAACAACAAGCCTCTTAAA+AGG | 0.320963 | 1_2:-45496422 | Msa0072500:CDS |
| AAGGGTCGTGGTAAATCAAC+TGG | 0.351381 | 1_2:-45499108 | Msa0072500:CDS |
| TGAATATTTGCTTGTGAGAT+AGG | 0.357972 | 1_2:+45496330 | None:intergenic |
| GCCTGATGAATAGATGGTTT+TGG | 0.366145 | 1_2:-45496130 | Msa0072500:intron |
| CCAGGAAGTTTGGATTTGTT+TGG | 0.373812 | 1_2:-45499270 | Msa0072500:CDS |
| CCAAACAAATCCAAACTTCC+TGG | 0.377742 | 1_2:+45499270 | None:intergenic |
| AAGAAAATATCATACTTGTA+TGG | 0.383243 | 1_2:+45497355 | None:intergenic |
| GGAAGCTGATGAGACATAAT+AGG | 0.397317 | 1_2:+45496288 | None:intergenic |
| ATCTCACAAGCAAATATTCA+TGG | 0.403263 | 1_2:-45496327 | Msa0072500:CDS |
| AAACATTGATAGATTCTCTC+TGG | 0.408364 | 1_2:+45496256 | None:intergenic |
| TTTGAGATACTATCTTTGTC+TGG | 0.410882 | 1_2:-45497503 | Msa0072500:CDS |
| AAACTTCCTGGTGTTGTTGT+TGG | 0.414109 | 1_2:+45499282 | None:intergenic |
| GGTCCTGACGGTCGAGTAAT+CGG | 0.416389 | 1_2:-45497413 | Msa0072500:CDS |
| CTAGGTCAACCTGGTTCTAC+TGG | 0.416830 | 1_2:-45498262 | Msa0072500:CDS |
| TCTTGAGTTGGGAGTTAGCT+AGG | 0.417449 | 1_2:-45495445 | Msa0072500:three_prime_UTR |
| CACCAAAAGAAGAAAATGTT+TGG | 0.425017 | 1_2:+45499073 | None:intergenic |
| GCTGGTGTTCTTATAGCTGC+TGG | 0.429689 | 1_2:-45497380 | Msa0072500:CDS |
| AGTTCTTATGCCACTATTGT+CGG | 0.434638 | 1_2:+45497466 | None:intergenic |
| TTAACAATCTTCTTGTAACT+TGG | 0.437261 | 1_2:+45499195 | None:intergenic |
| CCACTCCTGATGATGATACT+TGG | 0.440882 | 1_2:-45496209 | Msa0072500:CDS |
| AGAAAATATCATACTTGTAT+GGG | 0.443003 | 1_2:+45497356 | None:intergenic |
| GATTCTCTCTGGATTTGATC+AGG | 0.443447 | 1_2:+45496267 | None:intergenic |
| TCTTTATATATTGTTTCTCA+TGG | 0.446469 | 1_2:-45499469 | Msa0072500:exon |
| ACCAAAACCATCTATTCATC+AGG | 0.449295 | 1_2:+45496129 | None:intergenic |
| AACCAAGAAGAGTATTCAAA+TGG | 0.450734 | 1_2:+45499586 | None:intergenic |
| AACTTTAGAGATTGCTCCAT+TGG | 0.453949 | 1_2:+45498288 | None:intergenic |
| GTGGCTTCTCCAACTTCAAC+TGG | 0.454329 | 1_2:-45496378 | Msa0072500:CDS |
| GGATTGAGTGTCTCGCTAGC+TGG | 0.460601 | 1_2:-45497434 | Msa0072500:CDS |
| GGCAAAGAAATATTGATGTC+AGG | 0.467800 | 1_2:+45496150 | None:intergenic |
| CTTTCCATTTCTGGAAACAA+AGG | 0.471831 | 1_2:-45499517 | Msa0072500:five_prime_UTR |
| AAATCCACAGCAGCTGTGCT+TGG | 0.476159 | 1_2:+45498549 | None:intergenic |
| CTGTTCCAAGTATCATCATC+AGG | 0.478067 | 1_2:+45496204 | None:intergenic |
| GAAAGAATACATATTCCTCT+TGG | 0.479921 | 1_2:+45498313 | None:intergenic |
| TCTTGGTTTCAGATTGTAGT+GGG | 0.483076 | 1_2:-45496465 | Msa0072500:intron |
| TTTGTCACTTTGTAGGATGT+TGG | 0.483338 | 1_2:-45498367 | Msa0072500:intron |
| ATTTCTGGACCAGTTGAAGT+TGG | 0.494397 | 1_2:+45496369 | None:intergenic |
| CGGAATTTGTGATGACAACT+AGG | 0.496503 | 1_2:-45495599 | Msa0072500:three_prime_UTR |
| GTAATCGGAGGTGCTGTTGC+TGG | 0.497506 | 1_2:-45497398 | Msa0072500:CDS |
| GTTGTTGTTGGTGTGACTGT+TGG | 0.501545 | 1_2:+45499294 | None:intergenic |
| AACAACAGCAATGTTTCAGT+TGG | 0.502217 | 1_2:-45499432 | Msa0072500:CDS |
| ATATGTATTCTTTCTGCCAA+TGG | 0.503403 | 1_2:-45498304 | Msa0072500:CDS |
| GTGGGGAGCTTCGTGTCAAA+TGG | 0.505548 | 1_2:-45496447 | Msa0072500:CDS |
| ATGTTCATGTTCATTTCTTG+AGG | 0.510057 | 1_2:+45499375 | None:intergenic |
| CCAAGAAAATATGATGCTGA+TGG | 0.513931 | 1_2:-45499228 | Msa0072500:CDS |
| GTCACACCAACAACAACACC+AGG | 0.516153 | 1_2:-45499288 | Msa0072500:CDS |
| ATCTTTGTCTGGATCTTACA+CGG | 0.516175 | 1_2:-45497492 | Msa0072500:CDS |
| GTTTCCAAGCACAGCTGCTG+TGG | 0.518458 | 1_2:-45498553 | Msa0072500:CDS |
| TACACGGCTTCCGACAATAG+TGG | 0.519167 | 1_2:-45497476 | Msa0072500:CDS |
| ACAACAGCAATGTTTCAGTT+GGG | 0.533238 | 1_2:-45499431 | Msa0072500:CDS |
| GTCTCGCTAGCTGGTCCTGA+CGG | 0.538358 | 1_2:-45497425 | Msa0072500:CDS |
| ATGAACATGAACATAAGTGT+TGG | 0.538632 | 1_2:-45499366 | Msa0072500:CDS |
| CCTCCGATTACTCGACCGTC+AGG | 0.542913 | 1_2:+45497410 | None:intergenic |
| TGAAATGAGAGAAAAGTGAA+AGG | 0.550103 | 1_2:+45499542 | None:intergenic |
| GTCACTTTGTAGGATGTTGG+TGG | 0.552302 | 1_2:-45498364 | Msa0072500:intron |
| TTTGTAGACAAAGTGAATCC+TGG | 0.553687 | 1_2:+45499147 | None:intergenic |
| CATGTAATCACAGTTTATGC+AGG | 0.557312 | 1_2:-45498519 | Msa0072500:CDS |
| GGTGATGTTAGTATTGGTGT+TGG | 0.559390 | 1_2:+45499168 | None:intergenic |
| CTGATGAATATTCAGATCAA+AGG | 0.560465 | 1_2:-45496179 | Msa0072500:CDS |
| TTTGTTGTTGCTAGTTGTTG+TGG | 0.579732 | 1_2:+45499405 | None:intergenic |
| TTGGGAGTTAGCTAGGTCCA+TGG | 0.583032 | 1_2:-45495438 | Msa0072500:three_prime_UTR |
| GGCATAAGAACTCGTGAGGG+TGG | 0.588092 | 1_2:-45497455 | Msa0072500:CDS |
| TTCTTGGTTTCAGATTGTAG+TGG | 0.588884 | 1_2:-45496466 | Msa0072500:intron |
| AATCCTGGTGATGTTAGTAT+TGG | 0.598992 | 1_2:+45499162 | None:intergenic |
| GAAAATATCATACTTGTATG+GGG | 0.602829 | 1_2:+45497357 | None:intergenic |
| AGGTAATGGAGAGGCTGACA+TGG | 0.609701 | 1_2:-45495642 | Msa0072500:three_prime_UTR |
| CTTGGTTTCAGATTGTAGTG+GGG | 0.614189 | 1_2:-45496464 | Msa0072500:intron |
| TAGTGGCATAAGAACTCGTG+AGG | 0.614495 | 1_2:-45497459 | Msa0072500:CDS |
| AAAGTTGCACTAGGTCAACC+TGG | 0.616623 | 1_2:-45498271 | Msa0072500:CDS |
| TGGAGAGGCTGACATGGTAA+CGG | 0.618201 | 1_2:-45495636 | Msa0072500:three_prime_UTR |
| AATCACAGTTTATGCAGGAG+AGG | 0.637801 | 1_2:-45498514 | Msa0072500:intron |
| CCAAGTATCATCATCAGGAG+TGG | 0.638537 | 1_2:+45496209 | None:intergenic |
| GCAATCTCTAAAGTTGCACT+AGG | 0.638595 | 1_2:-45498280 | Msa0072500:CDS |
| ACACCAATACTAACATCACC+AGG | 0.639289 | 1_2:-45499165 | Msa0072500:CDS |
| TCTGATTTCAGGTAATGGAG+AGG | 0.652237 | 1_2:-45495651 | Msa0072500:intron |
| AAGCCACTGTTTGTTCACGT+TGG | 0.653220 | 1_2:+45496394 | None:intergenic |
| ATGCTACCACCAGTAGAACC+AGG | 0.659895 | 1_2:+45498253 | None:intergenic |
| TTTGCACAGAAGAGTCCAAG+AGG | 0.677413 | 1_2:-45498328 | Msa0072500:CDS |
| GGTCAACCTGGTTCTACTGG+TGG | 0.677585 | 1_2:-45498259 | Msa0072500:CDS |
| CCTGACGGTCGAGTAATCGG+AGG | 0.685399 | 1_2:-45497410 | Msa0072500:CDS |
| AGTGGCATAAGAACTCGTGA+GGG | 0.694545 | 1_2:-45497458 | Msa0072500:CDS |
| GCATAAACTGTGATTACATG+TGG | 0.695853 | 1_2:+45498522 | None:intergenic |
| AGGGTCGTGGTAAATCAACT+GGG | 0.700074 | 1_2:-45499107 | Msa0072500:CDS |
| GTACCAACGTGAACAAACAG+TGG | 0.714692 | 1_2:-45496397 | Msa0072500:CDS |
| TAACGGAATGAAACTAACAG+CGG | 0.790419 | 1_2:-45495619 | Msa0072500:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACTAATTTACATTATTA+GGG | + | chr1_2:45496180-45496199 | None:intergenic | 10.0% |
| !!! | TTTATTTTTTTTACTTGTAA+TGG | - | chr1_2:45496222-45496241 | Msa0072500:CDS | 10.0% |
| !! | AAAATATTTATTCATAACAA+TGG | - | chr1_2:45497670-45497689 | Msa0072500:intron | 10.0% |
| !! | AAATATTTATTCATAACAAT+GGG | - | chr1_2:45497671-45497690 | Msa0072500:intron | 10.0% |
| !! | CATAACTAATTTACATTATT+AGG | + | chr1_2:45496181-45496200 | None:intergenic | 15.0% |
| !! | GTTTGTGAAATAATTAATTT+AGG | - | chr1_2:45496341-45496360 | Msa0072500:CDS | 15.0% |
| !!! | AATACTATATATGCTTTATT+TGG | + | chr1_2:45498436-45498455 | None:intergenic | 15.0% |
| !!! | TCTTTATATATTGTTTCTCA+TGG | - | chr1_2:45495522-45495541 | Msa0072500:three_prime_UTR | 20.0% |
| !! | AAAAAGAAGAAGAAAAACAT+GGG | + | chr1_2:45495986-45496005 | None:intergenic | 20.0% |
| !!! | TTCTTCTTTTTCTTTACAAT+GGG | - | chr1_2:45495995-45496014 | Msa0072500:intron | 20.0% |
| !!! | TTTTTCATCTCTTAGTTTAT+AGG | - | chr1_2:45496093-45496112 | Msa0072500:intron | 20.0% |
| !!! | TTTTCATCTCTTAGTTTATA+GGG | - | chr1_2:45496094-45496113 | Msa0072500:intron | 20.0% |
| !! | CATAAAAAAACAAATTCACA+CGG | + | chr1_2:45496302-45496321 | None:intergenic | 20.0% |
| !!! | ATATTATTTTGTCACTTTGT+AGG | - | chr1_2:45496617-45496636 | Msa0072500:intron | 20.0% |
| !!! | ATATTTTTCCCTTTAATTGT+TGG | - | chr1_2:45496809-45496828 | Msa0072500:intron | 20.0% |
| !! | AAATTGAACCAACAATTAAA+GGG | + | chr1_2:45496820-45496839 | None:intergenic | 20.0% |
| !! | AAAATTGAACCAACAATTAA+AGG | + | chr1_2:45496821-45496840 | None:intergenic | 20.0% |
| !! | GAAAATAATACTATTGTTCA+AGG | + | chr1_2:45496856-45496875 | None:intergenic | 20.0% |
| !!! | TGAACAATAGTATTATTTTC+TGG | - | chr1_2:45496856-45496875 | Msa0072500:intron | 20.0% |
| !!! | AACATTTTTAGCTAACAAAT+AGG | + | chr1_2:45497013-45497032 | None:intergenic | 20.0% |
| !!! | ACATTTTGCAATTTTATACT+AGG | + | chr1_2:45497152-45497171 | None:intergenic | 20.0% |
| !! | AAAAGAGTAATAACAATAAC+AGG | + | chr1_2:45497392-45497411 | None:intergenic | 20.0% |
| !!! | TTACATTCTAAAAATTGTGA+TGG | - | chr1_2:45497410-45497429 | Msa0072500:CDS | 20.0% |
| !! | AGAAAATATCATACTTGTAT+GGG | + | chr1_2:45497638-45497657 | None:intergenic | 20.0% |
| !! | AAGAAAATATCATACTTGTA+TGG | + | chr1_2:45497639-45497658 | None:intergenic | 20.0% |
| !! | ACCAACTGATAAATATAAAA+TGG | + | chr1_2:45498117-45498136 | None:intergenic | 20.0% |
| !! | AAAATTGGATATAAAGTGAT+AGG | + | chr1_2:45498156-45498175 | None:intergenic | 20.0% |
| !! | TTATGTATTTATTTCAGCTA+TGG | + | chr1_2:45498483-45498502 | None:intergenic | 20.0% |
| !!! | TGTTTTTTAATTCTGATTTC+AGG | - | chr1_2:45499329-45499348 | Msa0072500:CDS | 20.0% |
| !! | ATTAGAAAGCAGTATTATTA+TGG | - | chr1_2:45499444-45499463 | Msa0072500:CDS | 20.0% |
| ! | AACAGTATTGTAACTACTAT+TGG | - | chr1_2:45495649-45495668 | Msa0072500:intron | 25.0% |
| ! | TTAACAATCTTCTTGTAACT+TGG | + | chr1_2:45495799-45495818 | None:intergenic | 25.0% |
| !! | TACCAAACATTTTCTTCTTT+TGG | - | chr1_2:45495916-45495935 | Msa0072500:intron | 25.0% |
| ! | GAAAAAGAAGAAGAAAAACA+TGG | + | chr1_2:45495987-45496006 | None:intergenic | 25.0% |
| !! | CTTCTTCTTTTTCTTTACAA+TGG | - | chr1_2:45495994-45496013 | Msa0072500:intron | 25.0% |
| !!! | AATGGCTAAATTTTTGAGTT+AGG | - | chr1_2:45496240-45496259 | Msa0072500:CDS | 25.0% |
| !!! | ATGGCTAAATTTTTGAGTTA+GGG | - | chr1_2:45496241-45496260 | Msa0072500:CDS | 25.0% |
| !! | TTTGTGTGTTGTAATTTTGA+AGG | - | chr1_2:45496409-45496428 | Msa0072500:CDS | 25.0% |
| !!! | TGAAGTTTTAACAGATCTAT+AGG | - | chr1_2:45496571-45496590 | Msa0072500:intron | 25.0% |
| ! | TTTAACAGATCTATAGGATT+TGG | - | chr1_2:45496577-45496596 | Msa0072500:intron | 25.0% |
| ! | TGAGAACTAATTCTACTAAA+TGG | - | chr1_2:45497062-45497081 | Msa0072500:intron | 25.0% |
| ! | GAGAACTAATTCTACTAAAT+GGG | - | chr1_2:45497063-45497082 | Msa0072500:intron | 25.0% |
| ! | CTTAGAGTAATTACTCAATT+TGG | - | chr1_2:45497100-45497119 | Msa0072500:intron | 25.0% |
| !!! | TCATTAAGTTGGTAATATTG+TGG | + | chr1_2:45497239-45497258 | None:intergenic | 25.0% |
| ! | TAAGAATGTCTTCATTAAGT+TGG | + | chr1_2:45497250-45497269 | None:intergenic | 25.0% |
| ! | GAAAATATCATACTTGTATG+GGG | + | chr1_2:45497637-45497656 | None:intergenic | 25.0% |
| !! | TTTATTCATAACAATGGGTT+TGG | - | chr1_2:45497676-45497695 | Msa0072500:intron | 25.0% |
| ! | AAACTATCTCAAACTAAAGT+AGG | - | chr1_2:45497801-45497820 | Msa0072500:intron | 25.0% |
| !!! | GCCATTTTATATTTATCAGT+TGG | - | chr1_2:45498113-45498132 | Msa0072500:intron | 25.0% |
| ! | TAGTGAATAAGCTAGAAAAT+TGG | + | chr1_2:45498171-45498190 | None:intergenic | 25.0% |
| !!! | TTTTCTAGCTTATTCACTAT+CGG | - | chr1_2:45498172-45498191 | Msa0072500:intron | 25.0% |
| ! | GCATATATAGTATTTGATTG+AGG | - | chr1_2:45498442-45498461 | Msa0072500:intron | 25.0% |
| ! | TAATCTTCTTAACACATTCT+TGG | - | chr1_2:45498509-45498528 | Msa0072500:intron | 25.0% |
| ! | AACAGTTACAATAAGATGAA+GGG | + | chr1_2:45499313-45499332 | None:intergenic | 25.0% |
| ! | AAACAGTTACAATAAGATGA+AGG | + | chr1_2:45499314-45499333 | None:intergenic | 25.0% |
| !! | TTAATTCTGATTTCAGGTAA+TGG | - | chr1_2:45499335-45499354 | Msa0072500:CDS | 25.0% |
| !!! | GACATTTTTAGTTATTCTGT+TGG | - | chr1_2:45499587-45499606 | Msa0072500:five_prime_UTR | 25.0% |
| !! | AACCAAGAAGAGTATTCAAA+TGG | + | chr1_2:45495408-45495427 | None:intergenic | 30.0% |
| TGAAATGAGAGAAAAGTGAA+AGG | + | chr1_2:45495452-45495471 | None:intergenic | 30.0% | |
| !! | TTTTCCTTTGTTTCCAGAAA+TGG | + | chr1_2:45495481-45495500 | None:intergenic | 30.0% |
| ATGTTCATGTTCATTTCTTG+AGG | + | chr1_2:45495619-45495638 | None:intergenic | 30.0% | |
| ATGAACATGAACATAAGTGT+TGG | - | chr1_2:45495625-45495644 | Msa0072500:three_prime_UTR | 30.0% | |
| TTGTTTGGTAAGAAAAAGAG+AGG | - | chr1_2:45495736-45495755 | Msa0072500:intron | 30.0% | |
| TCTTCTTGTAACTTGGATTT+AGG | + | chr1_2:45495792-45495811 | None:intergenic | 30.0% | |
| ! | AAATGAGTTTTCCTCCAAAA+AGG | - | chr1_2:45495864-45495883 | Msa0072500:intron | 30.0% |
| ! | AATGAGTTTTCCTCCAAAAA+GGG | - | chr1_2:45495865-45495884 | Msa0072500:intron | 30.0% |
| CACCAAAAGAAGAAAATGTT+TGG | + | chr1_2:45495921-45495940 | None:intergenic | 30.0% | |
| TTGTACCCAAAATGTTTGAT+GGG | - | chr1_2:45496035-45496054 | Msa0072500:intron | 30.0% | |
| ! | AACTACCCATCAAACATTTT+GGG | + | chr1_2:45496043-45496062 | None:intergenic | 30.0% |
| ! | AAACTACCCATCAAACATTT+TGG | + | chr1_2:45496044-45496063 | None:intergenic | 30.0% |
| !! | AATGTTTGATGGGTAGTTTT+TGG | - | chr1_2:45496045-45496064 | Msa0072500:intron | 30.0% |
| ! | TCTCTTAGTTTATAGGGTTT+TGG | - | chr1_2:45496100-45496119 | Msa0072500:intron | 30.0% |
| ! | CTCTTAGTTTATAGGGTTTT+GGG | - | chr1_2:45496101-45496120 | Msa0072500:intron | 30.0% |
| !!! | AATTTTTGAGTTAGGGTTCA+AGG | - | chr1_2:45496248-45496267 | Msa0072500:CDS | 30.0% |
| GAAAGAATACATATTCCTCT+TGG | + | chr1_2:45496681-45496700 | None:intergenic | 30.0% | |
| ATATGTATTCTTTCTGCCAA+TGG | - | chr1_2:45496687-45496706 | Msa0072500:intron | 30.0% | |
| CTAAGTATAGAGTATGGAAA+TGG | - | chr1_2:45496896-45496915 | Msa0072500:intron | 30.0% | |
| TACCTACTGTTGACATATAT+GGG | + | chr1_2:45496922-45496941 | None:intergenic | 30.0% | |
| AGACAGATTATCTGACAATT+AGG | + | chr1_2:45496945-45496964 | None:intergenic | 30.0% | |
| CATCTTTGACATTATTCACA+TGG | - | chr1_2:45497201-45497220 | Msa0072500:intron | 30.0% | |
| TTAATGCCCTATTTACTTTC+AGG | - | chr1_2:45497460-45497479 | Msa0072500:CDS | 30.0% | |
| TAATGCCCTATTTACTTTCA+GGG | - | chr1_2:45497461-45497480 | Msa0072500:CDS | 30.0% | |
| ! | TTTGAGATACTATCTTTGTC+TGG | - | chr1_2:45497488-45497507 | Msa0072500:CDS | 30.0% |
| ! | TGCATGATATGTAGAGTATT+TGG | - | chr1_2:45497848-45497867 | Msa0072500:intron | 30.0% |
| ! | GCATGATATGTAGAGTATTT+GGG | - | chr1_2:45497849-45497868 | Msa0072500:intron | 30.0% |
| TGATTGCATTCATAACACTA+TGG | - | chr1_2:45497875-45497894 | Msa0072500:intron | 30.0% | |
| TATGCTATACACTAGTTGTT+CGG | + | chr1_2:45497916-45497935 | None:intergenic | 30.0% | |
| ATGATCGAAGTACAACTATT+TGG | - | chr1_2:45497943-45497962 | Msa0072500:intron | 30.0% | |
| GAAGTACAACTATTTGGTAA+TGG | - | chr1_2:45497949-45497968 | Msa0072500:intron | 30.0% | |
| !! | CAAGCTTTTAGTGTTTTTTG+AGG | - | chr1_2:45497980-45497999 | Msa0072500:intron | 30.0% |
| !!! | AATCGTAAGTTTTGATTCAC+GGG | + | chr1_2:45498340-45498359 | None:intergenic | 30.0% |
| !!! | GAATCGTAAGTTTTGATTCA+CGG | + | chr1_2:45498341-45498360 | None:intergenic | 30.0% |
| TGAATATTTGCTTGTGAGAT+AGG | + | chr1_2:45498664-45498683 | None:intergenic | 30.0% | |
| ATCTCACAAGCAAATATTCA+TGG | - | chr1_2:45498664-45498683 | Msa0072500:intron | 30.0% | |
| AAACATTGATAGATTCTCTC+TGG | + | chr1_2:45498738-45498757 | None:intergenic | 30.0% | |
| CTGATGAATATTCAGATCAA+AGG | - | chr1_2:45498812-45498831 | Msa0072500:intron | 30.0% | |
| GTTTCATGTCACTAATATGA+CGG | - | chr1_2:45498908-45498927 | Msa0072500:intron | 30.0% | |
| TACTATAAGCTTCTACCTAA+AGG | + | chr1_2:45498993-45499012 | None:intergenic | 30.0% | |
| TATAGTATTACTCGTCTTCA+CGG | - | chr1_2:45499006-45499025 | Msa0072500:intron | 30.0% | |
| ACAGTTACAATAAGATGAAG+GGG | + | chr1_2:45499312-45499331 | None:intergenic | 30.0% | |
| !!! | TCTTTGTTTTCTTCTTGAGT+TGG | - | chr1_2:45499534-45499553 | Msa0072500:five_prime_UTR | 30.0% |
| !!! | CTTTGTTTTCTTCTTGAGTT+GGG | - | chr1_2:45499535-45499554 | Msa0072500:five_prime_UTR | 30.0% |
| !! | AATGTCTTTTGATAACTCCA+TGG | + | chr1_2:45499573-45499592 | None:intergenic | 30.0% |
| TGCTTCAATTCTTCTCTTAG+TGG | - | chr1_2:45495380-45495399 | Msa0072500:three_prime_UTR | 35.0% | |
| CATTTCAAGCTTTCCATTTC+TGG | - | chr1_2:45495465-45495484 | Msa0072500:three_prime_UTR | 35.0% | |
| ! | CTTTCCATTTCTGGAAACAA+AGG | - | chr1_2:45495474-45495493 | Msa0072500:three_prime_UTR | 35.0% |
| AACAACAGCAATGTTTCAGT+TGG | - | chr1_2:45495559-45495578 | Msa0072500:three_prime_UTR | 35.0% | |
| ACAACAGCAATGTTTCAGTT+GGG | - | chr1_2:45495560-45495579 | Msa0072500:three_prime_UTR | 35.0% | |
| !! | TTTGTTGTTGCTAGTTGTTG+TGG | + | chr1_2:45495589-45495608 | None:intergenic | 35.0% |
| ! | CCATCAGCATCATATTTTCT+TGG | + | chr1_2:45495766-45495785 | None:intergenic | 35.0% |
| CCAAGAAAATATGATGCTGA+TGG | - | chr1_2:45495763-45495782 | Msa0072500:intron | 35.0% | |
| ! | AATCCTGGTGATGTTAGTAT+TGG | + | chr1_2:45495832-45495851 | None:intergenic | 35.0% |
| TTTGTAGACAAAGTGAATCC+TGG | + | chr1_2:45495847-45495866 | None:intergenic | 35.0% | |
| GAAGAAGAAAAACATGGGTA+AGG | + | chr1_2:45495981-45496000 | None:intergenic | 35.0% | |
| CTTGTACCCAAAATGTTTGA+TGG | - | chr1_2:45496034-45496053 | Msa0072500:intron | 35.0% | |
| !! | GTGTTGTAATTTTGAAGGTG+AGG | - | chr1_2:45496414-45496433 | Msa0072500:CDS | 35.0% |
| GCATAAACTGTGATTACATG+TGG | + | chr1_2:45496472-45496491 | None:intergenic | 35.0% | |
| CATGTAATCACAGTTTATGC+AGG | - | chr1_2:45496472-45496491 | Msa0072500:intron | 35.0% | |
| !! | TTTGTCACTTTGTAGGATGT+TGG | - | chr1_2:45496624-45496643 | Msa0072500:intron | 35.0% |
| ! | AACTTTAGAGATTGCTCCAT+TGG | + | chr1_2:45496706-45496725 | None:intergenic | 35.0% |
| CTTCTGCTAAGTATAGAGTA+TGG | - | chr1_2:45496890-45496909 | Msa0072500:intron | 35.0% | |
| GTACCTACTGTTGACATATA+TGG | + | chr1_2:45496923-45496942 | None:intergenic | 35.0% | |
| TTGTCTCTACTTGAAGTTGA+AGG | - | chr1_2:45496969-45496988 | Msa0072500:intron | 35.0% | |
| TGTCTCTACTTGAAGTTGAA+GGG | - | chr1_2:45496970-45496989 | Msa0072500:intron | 35.0% | |
| AAAGATGCAAATCTGACAAC+GGG | + | chr1_2:45497188-45497207 | None:intergenic | 35.0% | |
| CAAAGATGCAAATCTGACAA+CGG | + | chr1_2:45497189-45497208 | None:intergenic | 35.0% | |
| ATCTTTGTCTGGATCTTACA+CGG | - | chr1_2:45497499-45497518 | Msa0072500:CDS | 35.0% | |
| AGTTCTTATGCCACTATTGT+CGG | + | chr1_2:45497528-45497547 | None:intergenic | 35.0% | |
| TAACTTATCCATCATCCTCA+CGG | - | chr1_2:45498236-45498255 | Msa0072500:intron | 35.0% | |
| !!! | AGGGATATTTTTTGACTCGT+GGG | + | chr1_2:45498291-45498310 | None:intergenic | 35.0% |
| TTCTTGGTTTCAGATTGTAG+TGG | - | chr1_2:45498525-45498544 | Msa0072500:CDS | 35.0% | |
| TCTTGGTTTCAGATTGTAGT+GGG | - | chr1_2:45498526-45498545 | Msa0072500:CDS | 35.0% | |
| ACAACAACAAGCCTCTTAAA+AGG | - | chr1_2:45498569-45498588 | Msa0072500:intron | 35.0% | |
| GGCAAAGAAATATTGATGTC+AGG | + | chr1_2:45498844-45498863 | None:intergenic | 35.0% | |
| TTCTTTGCCTGATGAATAGA+TGG | - | chr1_2:45498855-45498874 | Msa0072500:intron | 35.0% | |
| ACCAAAACCATCTATTCATC+AGG | + | chr1_2:45498865-45498884 | None:intergenic | 35.0% | |
| TCACTAATATGACGGCTTTA+AGG | - | chr1_2:45498916-45498935 | Msa0072500:intron | 35.0% | |
| ! | CACTAATATGACGGCTTTAA+GGG | - | chr1_2:45498917-45498936 | Msa0072500:intron | 35.0% |
| ! | TGCTTGATGTCATTTCCTTT+AGG | - | chr1_2:45498975-45498994 | Msa0072500:intron | 35.0% |
| GAATGAGATGATGATCTAGT+TGG | - | chr1_2:45499033-45499052 | Msa0072500:intron | 35.0% | |
| AATGTAAGCAATTGCTTGGA+TGG | + | chr1_2:45499279-45499298 | None:intergenic | 35.0% | |
| TAGGAATGTAAGCAATTGCT+TGG | + | chr1_2:45499283-45499302 | None:intergenic | 35.0% | |
| TAACGGAATGAAACTAACAG+CGG | - | chr1_2:45499372-45499391 | Msa0072500:CDS | 35.0% | |
| CGCCATTTGAATACTCTTCT+TGG | - | chr1_2:45495403-45495422 | Msa0072500:three_prime_UTR | 40.0% | |
| !! | AAACTTCCTGGTGTTGTTGT+TGG | + | chr1_2:45495712-45495731 | None:intergenic | 40.0% |
| AACAACAACACCAGGAAGTT+TGG | - | chr1_2:45495711-45495730 | Msa0072500:intron | 40.0% | |
| CCAAACAAATCCAAACTTCC+TGG | + | chr1_2:45495724-45495743 | None:intergenic | 40.0% | |
| ! | CCAGGAAGTTTGGATTTGTT+TGG | - | chr1_2:45495721-45495740 | Msa0072500:intron | 40.0% |
| !! | GGTGATGTTAGTATTGGTGT+TGG | + | chr1_2:45495826-45495845 | None:intergenic | 40.0% |
| ACACCAATACTAACATCACC+AGG | - | chr1_2:45495826-45495845 | Msa0072500:intron | 40.0% | |
| ! | TGATTTACCACGACCCTTTT+TGG | + | chr1_2:45495881-45495900 | None:intergenic | 40.0% |
| ! | TTTGAGTTAGGGTTCAAGGT+CGG | - | chr1_2:45496252-45496271 | Msa0072500:CDS | 40.0% |
| AATCACAGTTTATGCAGGAG+AGG | - | chr1_2:45496477-45496496 | Msa0072500:intron | 40.0% | |
| !! | GCAATCTCTAAAGTTGCACT+AGG | - | chr1_2:45496711-45496730 | Msa0072500:intron | 40.0% |
| !! | TGGTAGCATTTTGACGTATG+AGG | - | chr1_2:45496752-45496771 | Msa0072500:intron | 40.0% |
| TCTACTTGAAGTTGAAGGGT+TGG | - | chr1_2:45496974-45496993 | Msa0072500:intron | 40.0% | |
| CACTTGAGCTAATCTCATGA+TGG | + | chr1_2:45497040-45497059 | None:intergenic | 40.0% | |
| TAGAACTGAGACAGAGAAAC+AGG | + | chr1_2:45497332-45497351 | None:intergenic | 40.0% | |
| ACCGTCCCTGAAAGTAAATA+GGG | + | chr1_2:45497469-45497488 | None:intergenic | 40.0% | |
| AACCGTCCCTGAAAGTAAAT+AGG | + | chr1_2:45497470-45497489 | None:intergenic | 40.0% | |
| ACTTGCAGTCAAATCTGGTA+GGG | + | chr1_2:45497743-45497762 | None:intergenic | 40.0% | |
| AACTTGCAGTCAAATCTGGT+AGG | + | chr1_2:45497744-45497763 | None:intergenic | 40.0% | |
| TTGCAACTTGCAGTCAAATC+TGG | + | chr1_2:45497748-45497767 | None:intergenic | 40.0% | |
| AACTTATCCATCATCCTCAC+GGG | - | chr1_2:45498237-45498256 | Msa0072500:intron | 40.0% | |
| !!! | CAGGGATATTTTTTGACTCG+TGG | + | chr1_2:45498292-45498311 | None:intergenic | 40.0% |
| ATAATTCGCGTGGCATTTGT+GGG | + | chr1_2:45498377-45498396 | None:intergenic | 40.0% | |
| AATAATTCGCGTGGCATTTG+TGG | + | chr1_2:45498378-45498397 | None:intergenic | 40.0% | |
| CTTGGTTTCAGATTGTAGTG+GGG | - | chr1_2:45498527-45498546 | Msa0072500:CDS | 40.0% | |
| ! | CGTTGGTACTTCCTTTTAAG+AGG | + | chr1_2:45498583-45498602 | None:intergenic | 40.0% |
| ! | ATTTCTGGACCAGTTGAAGT+TGG | + | chr1_2:45498625-45498644 | None:intergenic | 40.0% |
| GGAAGCTGATGAGACATAAT+AGG | + | chr1_2:45498706-45498725 | None:intergenic | 40.0% | |
| GATTCTCTCTGGATTTGATC+AGG | + | chr1_2:45498727-45498746 | None:intergenic | 40.0% | |
| CTGTTCCAAGTATCATCATC+AGG | + | chr1_2:45498790-45498809 | None:intergenic | 40.0% | |
| ! | GCCTGATGAATAGATGGTTT+TGG | - | chr1_2:45498861-45498880 | Msa0072500:intron | 40.0% |
| GACATGAAACGTCATGTCAT+AGG | + | chr1_2:45498898-45498917 | None:intergenic | 40.0% | |
| !! | TAATATGACGGCTTTAAGGG+TGG | - | chr1_2:45498920-45498939 | Msa0072500:intron | 40.0% |
| !! | TGATCTAGTTGGTGTCAGTT+CGG | - | chr1_2:45499044-45499063 | Msa0072500:intron | 40.0% |
| TAAGATGAAGGGGAAAACGT+AGG | + | chr1_2:45499302-45499321 | None:intergenic | 40.0% | |
| !! | TCTGATTTCAGGTAATGGAG+AGG | - | chr1_2:45499340-45499359 | Msa0072500:CDS | 40.0% |
| CGGAATTTGTGATGACAACT+AGG | - | chr1_2:45499392-45499411 | Msa0072500:CDS | 40.0% | |
| ! | GTTGTTGTTGGTGTGACTGT+TGG | + | chr1_2:45495700-45495719 | None:intergenic | 45.0% |
| ! | TTTTCCTCCAAAAAGGGTCG+TGG | - | chr1_2:45495871-45495890 | Msa0072500:intron | 45.0% |
| ! | TTTACCACGACCCTTTTTGG+AGG | + | chr1_2:45495878-45495897 | None:intergenic | 45.0% |
| AAGGGTCGTGGTAAATCAAC+TGG | - | chr1_2:45495883-45495902 | Msa0072500:intron | 45.0% | |
| AGGGTCGTGGTAAATCAACT+GGG | - | chr1_2:45495884-45495903 | Msa0072500:intron | 45.0% | |
| ! | GTCACTTTGTAGGATGTTGG+TGG | - | chr1_2:45496627-45496646 | Msa0072500:intron | 45.0% |
| TTTGCACAGAAGAGTCCAAG+AGG | - | chr1_2:45496663-45496682 | Msa0072500:intron | 45.0% | |
| AAAGTTGCACTAGGTCAACC+TGG | - | chr1_2:45496720-45496739 | Msa0072500:intron | 45.0% | |
| !! | GCATTTTGACGTATGAGGCA+TGG | - | chr1_2:45496757-45496776 | Msa0072500:intron | 45.0% |
| GGCCCATATATGTCAACAGT+AGG | - | chr1_2:45496917-45496936 | Msa0072500:intron | 45.0% | |
| GCCCTATTTACTTTCAGGGA+CGG | - | chr1_2:45497465-45497484 | Msa0072500:CDS | 45.0% | |
| TAGTGGCATAAGAACTCGTG+AGG | - | chr1_2:45497532-45497551 | Msa0072500:intron | 45.0% | |
| AGTGGCATAAGAACTCGTGA+GGG | - | chr1_2:45497533-45497552 | Msa0072500:intron | 45.0% | |
| ! | CACTATGGCTCTGTTTGTCA+AGG | - | chr1_2:45497890-45497909 | Msa0072500:intron | 45.0% |
| AATTTGACCCGTGAGGATGA+TGG | + | chr1_2:45498247-45498266 | None:intergenic | 45.0% | |
| GGAACAAAATTTGACCCGTG+AGG | + | chr1_2:45498254-45498273 | None:intergenic | 45.0% | |
| AGCTTGAGCAATAATTCGCG+TGG | + | chr1_2:45498387-45498406 | None:intergenic | 45.0% | |
| GTACCAACGTGAACAAACAG+TGG | - | chr1_2:45498594-45498613 | Msa0072500:intron | 45.0% | |
| AAGCCACTGTTTGTTCACGT+TGG | + | chr1_2:45498600-45498619 | None:intergenic | 45.0% | |
| CCAAGTATCATCATCAGGAG+TGG | + | chr1_2:45498785-45498804 | None:intergenic | 45.0% | |
| ! | CCACTCCTGATGATGATACT+TGG | - | chr1_2:45498782-45498801 | Msa0072500:intron | 45.0% |
| CATCAAGCATTAGTACGACG+TGG | + | chr1_2:45498964-45498983 | None:intergenic | 45.0% | |
| !! | TCTTGAGTTGGGAGTTAGCT+AGG | - | chr1_2:45499546-45499565 | Msa0072500:five_prime_UTR | 45.0% |
| !! | AAAAAAAAAAAAAAAATGTA+AGG | + | chr1_2:45499470-45499489 | None:intergenic | 5.0% |
| GTCACACCAACAACAACACC+AGG | - | chr1_2:45495703-45495722 | Msa0072500:intron | 50.0% | |
| AAATCCACAGCAGCTGTGCT+TGG | + | chr1_2:45496445-45496464 | None:intergenic | 50.0% | |
| !! | CTAGGTCAACCTGGTTCTAC+TGG | - | chr1_2:45496729-45496748 | Msa0072500:intron | 50.0% |
| ATGCTACCACCAGTAGAACC+AGG | + | chr1_2:45496741-45496760 | None:intergenic | 50.0% | |
| TACACGGCTTCCGACAATAG+TGG | - | chr1_2:45497515-45497534 | Msa0072500:intron | 50.0% | |
| GCTGGTGTTCTTATAGCTGC+TGG | - | chr1_2:45497611-45497630 | Msa0072500:intron | 50.0% | |
| !! | AAGCGAGGTGTGGTTTTGCA+GGG | + | chr1_2:45498310-45498329 | None:intergenic | 50.0% |
| GTGGCTTCTCCAACTTCAAC+TGG | - | chr1_2:45498613-45498632 | Msa0072500:intron | 50.0% | |
| ! | CGTGCTGCTGTGACTATTTC+TGG | + | chr1_2:45498640-45498659 | None:intergenic | 50.0% |
| !! | GGATGGAGAAGTGTCTCATG+TGG | + | chr1_2:45499262-45499281 | None:intergenic | 50.0% |
| !! | AGGTAATGGAGAGGCTGACA+TGG | - | chr1_2:45499349-45499368 | Msa0072500:CDS | 50.0% |
| TGGAGAGGCTGACATGGTAA+CGG | - | chr1_2:45499355-45499374 | Msa0072500:CDS | 50.0% | |
| TTGGGAGTTAGCTAGGTCCA+TGG | - | chr1_2:45499553-45499572 | Msa0072500:five_prime_UTR | 50.0% | |
| GTTTCCAAGCACAGCTGCTG+TGG | - | chr1_2:45496438-45496457 | Msa0072500:CDS | 55.0% | |
| !! | GGTCAACCTGGTTCTACTGG+TGG | - | chr1_2:45496732-45496751 | Msa0072500:intron | 55.0% |
| GGCATAAGAACTCGTGAGGG+TGG | - | chr1_2:45497536-45497555 | Msa0072500:intron | 55.0% | |
| GGATTGAGTGTCTCGCTAGC+TGG | - | chr1_2:45497557-45497576 | Msa0072500:intron | 55.0% | |
| GGTCCTGACGGTCGAGTAAT+CGG | - | chr1_2:45497578-45497597 | Msa0072500:intron | 55.0% | |
| !! | GTAATCGGAGGTGCTGTTGC+TGG | - | chr1_2:45497593-45497612 | Msa0072500:intron | 55.0% |
| TCGTGGGTCGTTGCTTACTC+GGG | + | chr1_2:45498275-45498294 | None:intergenic | 55.0% | |
| CTCGTGGGTCGTTGCTTACT+CGG | + | chr1_2:45498276-45498295 | None:intergenic | 55.0% | |
| !! | CAAGCGAGGTGTGGTTTTGC+AGG | + | chr1_2:45498311-45498330 | None:intergenic | 55.0% |
| GTGGGGAGCTTCGTGTCAAA+TGG | - | chr1_2:45498544-45498563 | Msa0072500:CDS | 55.0% | |
| GTGTCTCATGTGGTCTGCAG+CGG | + | chr1_2:45499252-45499271 | None:intergenic | 55.0% | |
| GTCTCGCTAGCTGGTCCTGA+CGG | - | chr1_2:45497566-45497585 | Msa0072500:intron | 60.0% | |
| CCTCCGATTACTCGACCGTC+AGG | + | chr1_2:45497584-45497603 | None:intergenic | 60.0% | |
| CCTGACGGTCGAGTAATCGG+AGG | - | chr1_2:45497581-45497600 | Msa0072500:intron | 60.0% | |
| TTCACGGGTCGTGACAAGCG+AGG | + | chr1_2:45498325-45498344 | None:intergenic | 60.0% | |
| GGGTCGTGACAAGCGAGGTG+TGG | + | chr1_2:45498320-45498339 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 45495375 | 45499638 | 45495375 | ID=Msa0072500;Name=Msa0072500 |
| chr1_2 | mRNA | 45495375 | 45499638 | 45495375 | ID=Msa0072500-mRNA-1;Parent=Msa0072500;Name=Msa0072500-mRNA-1;_AED=0.12;_eAED=0.12;_QI=166|1|1|1|0.8|0.66|6|297|365 |
| chr1_2 | exon | 45495375 | 45495662 | 45495375 | ID=Msa0072500-mRNA-1:exon:13757;Parent=Msa0072500-mRNA-1 |
| chr1_2 | exon | 45496131 | 45496475 | 45496131 | ID=Msa0072500-mRNA-1:exon:13756;Parent=Msa0072500-mRNA-1 |
| chr1_2 | exon | 45497370 | 45497531 | 45497370 | ID=Msa0072500-mRNA-1:exon:13755;Parent=Msa0072500-mRNA-1 |
| chr1_2 | exon | 45498240 | 45498374 | 45498240 | ID=Msa0072500-mRNA-1:exon:13754;Parent=Msa0072500-mRNA-1 |
| chr1_2 | exon | 45498515 | 45498582 | 45498515 | ID=Msa0072500-mRNA-1:exon:13753;Parent=Msa0072500-mRNA-1 |
| chr1_2 | exon | 45499076 | 45499638 | 45499076 | ID=Msa0072500-mRNA-1:exon:13752;Parent=Msa0072500-mRNA-1 |
| chr1_2 | five_prime_UTR | 45499473 | 45499638 | 45499473 | ID=Msa0072500-mRNA-1:five_prime_utr;Parent=Msa0072500-mRNA-1 |
| chr1_2 | CDS | 45499076 | 45499472 | 45499076 | ID=Msa0072500-mRNA-1:cds;Parent=Msa0072500-mRNA-1 |
| chr1_2 | CDS | 45498515 | 45498582 | 45498515 | ID=Msa0072500-mRNA-1:cds;Parent=Msa0072500-mRNA-1 |
| chr1_2 | CDS | 45498240 | 45498374 | 45498240 | ID=Msa0072500-mRNA-1:cds;Parent=Msa0072500-mRNA-1 |
| chr1_2 | CDS | 45497370 | 45497531 | 45497370 | ID=Msa0072500-mRNA-1:cds;Parent=Msa0072500-mRNA-1 |
| chr1_2 | CDS | 45496140 | 45496475 | 45496140 | ID=Msa0072500-mRNA-1:cds;Parent=Msa0072500-mRNA-1 |
| chr1_2 | three_prime_UTR | 45496131 | 45496139 | 45496131 | ID=Msa0072500-mRNA-1:three_prime_utr;Parent=Msa0072500-mRNA-1 |
| chr1_2 | three_prime_UTR | 45495375 | 45495662 | 45495375 | ID=Msa0072500-mRNA-1:three_prime_utr;Parent=Msa0072500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
