Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025010 | sp|Q8VYJ2|AHL1_ARATH | 48.548 | 241 | 110 | 4 | 69 | 304 | 89 | 320 | 1.79e-62 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025010 | Msa0072500 | 0.899689 | 1.545381e-77 | -8.615850e-47 |
| Msa0025010 | Msa0380490 | 0.804622 | 1.977922e-49 | -8.615850e-47 |
| Msa0025010 | Msa0481890 | 0.803800 | 2.932715e-49 | -8.615850e-47 |
| Msa0025010 | Msa0709440 | 0.802226 | 6.204329e-49 | -8.615850e-47 |
| Msa0025010 | Msa1171290 | 0.805846 | 1.096045e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025010 | MtrunA17_Chr1g0179461 | 97.275 | 367 | 8 | 2 | 1 | 366 | 1 | 366 | 0.0 | 718 |
| Msa0025010 | MtrunA17_Chr7g0245841 | 43.465 | 329 | 146 | 10 | 47 | 365 | 35 | 333 | 4.90e-59 | 194 |
| Msa0025010 | MtrunA17_Chr8g0349091 | 50.235 | 213 | 95 | 3 | 69 | 281 | 89 | 290 | 1.45e-51 | 175 |
| Msa0025010 | MtrunA17_Chr8g0351761 | 41.615 | 322 | 137 | 10 | 64 | 365 | 66 | 356 | 1.47e-48 | 167 |
| Msa0025010 | MtrunA17_Chr1g0188211 | 40.836 | 311 | 142 | 11 | 69 | 356 | 49 | 340 | 9.94e-47 | 162 |
| Msa0025010 | MtrunA17_Chr4g0056761 | 48.485 | 231 | 108 | 6 | 58 | 284 | 61 | 284 | 2.53e-46 | 160 |
| Msa0025010 | MtrunA17_Chr5g0397551 | 45.631 | 206 | 98 | 3 | 69 | 274 | 70 | 261 | 2.68e-46 | 160 |
| Msa0025010 | MtrunA17_Chr4g0054661 | 41.379 | 261 | 126 | 7 | 61 | 308 | 65 | 311 | 3.72e-46 | 160 |
| Msa0025010 | MtrunA17_Chr7g0247431 | 43.299 | 194 | 101 | 2 | 69 | 262 | 89 | 273 | 2.93e-43 | 153 |
| Msa0025010 | MtrunA17_Chr8g0386741 | 43.478 | 230 | 112 | 5 | 69 | 289 | 97 | 317 | 1.86e-42 | 151 |
| Msa0025010 | MtrunA17_Chr5g0398621 | 40.889 | 225 | 103 | 5 | 68 | 288 | 45 | 243 | 4.90e-41 | 144 |
| Msa0025010 | MtrunA17_Chr6g0476061 | 40.613 | 261 | 121 | 8 | 69 | 314 | 51 | 292 | 8.93e-37 | 135 |
| Msa0025010 | MtrunA17_Chr1g0190011 | 39.151 | 212 | 112 | 5 | 53 | 261 | 25 | 222 | 2.06e-31 | 121 |
| Msa0025010 | MtrunA17_Chr4g0027371 | 45.399 | 163 | 77 | 5 | 134 | 293 | 8 | 161 | 2.29e-30 | 116 |
| Msa0025010 | MtrunA17_Chr4g0027351 | 54.237 | 118 | 50 | 3 | 140 | 256 | 14 | 128 | 1.18e-27 | 105 |
| Msa0025010 | MtrunA17_Chr7g0274821 | 41.176 | 204 | 89 | 5 | 69 | 262 | 74 | 256 | 1.59e-27 | 111 |
| Msa0025010 | MtrunA17_Chr1g0165101 | 35.075 | 268 | 127 | 8 | 16 | 267 | 48 | 284 | 6.19e-27 | 109 |
| Msa0025010 | MtrunA17_Chr4g0027331 | 52.101 | 119 | 53 | 3 | 140 | 255 | 14 | 131 | 3.74e-26 | 102 |
| Msa0025010 | MtrunA17_Chr3g0133051 | 34.109 | 129 | 85 | 0 | 145 | 273 | 101 | 229 | 1.82e-20 | 90.5 |
| Msa0025010 | MtrunA17_Chr5g0427311 | 34.109 | 129 | 82 | 2 | 146 | 273 | 81 | 207 | 1.48e-19 | 86.7 |
| Msa0025010 | MtrunA17_Chr6g0476241 | 36.735 | 196 | 95 | 9 | 69 | 262 | 120 | 288 | 5.97e-19 | 86.3 |
| Msa0025010 | MtrunA17_Chr4g0027301 | 40.800 | 125 | 70 | 3 | 135 | 256 | 16 | 139 | 1.76e-18 | 81.3 |
| Msa0025010 | MtrunA17_Chr5g0417581 | 41.985 | 131 | 59 | 4 | 146 | 261 | 20 | 148 | 2.14e-18 | 82.4 |
| Msa0025010 | MtrunA17_Chr3g0086021 | 38.211 | 123 | 69 | 2 | 157 | 276 | 118 | 236 | 2.62e-18 | 84.3 |
| Msa0025010 | MtrunA17_Chr3g0112131 | 40.800 | 125 | 70 | 2 | 148 | 272 | 109 | 229 | 1.11e-17 | 82.8 |
| Msa0025010 | MtrunA17_Chr5g0398531 | 41.600 | 125 | 69 | 2 | 148 | 272 | 130 | 250 | 5.25e-16 | 78.2 |
| Msa0025010 | MtrunA17_Chr5g0443311 | 37.500 | 184 | 99 | 5 | 90 | 272 | 33 | 201 | 1.03e-15 | 76.3 |
| Msa0025010 | MtrunA17_Chr4g0054651 | 39.259 | 135 | 78 | 2 | 148 | 282 | 106 | 236 | 1.60e-15 | 76.3 |
| Msa0025010 | MtrunA17_Chr1g0168121 | 39.516 | 124 | 71 | 2 | 148 | 271 | 72 | 191 | 3.24e-15 | 75.1 |
| Msa0025010 | MtrunA17_Chr8g0351651 | 41.600 | 125 | 69 | 2 | 148 | 272 | 116 | 236 | 5.10e-15 | 75.1 |
| Msa0025010 | MtrunA17_Chr7g0250031 | 41.935 | 124 | 68 | 2 | 148 | 271 | 87 | 206 | 1.45e-14 | 73.2 |
| Msa0025010 | MtrunA17_Chr1g0190051 | 44.348 | 115 | 58 | 3 | 148 | 261 | 104 | 213 | 8.30e-13 | 68.6 |
| Msa0025010 | MtrunA17_Chr5g0435681 | 38.261 | 115 | 67 | 2 | 149 | 263 | 120 | 230 | 6.18e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025010 | AT4G12080.1 | 48.548 | 241 | 110 | 4 | 69 | 304 | 89 | 320 | 1.82e-63 | 206 |
| Msa0025010 | AT4G25320.1 | 46.058 | 241 | 107 | 6 | 69 | 296 | 86 | 316 | 5.91e-55 | 186 |
| Msa0025010 | AT2G45850.1 | 46.009 | 213 | 102 | 3 | 69 | 281 | 98 | 297 | 6.81e-54 | 181 |
| Msa0025010 | AT2G45850.2 | 46.009 | 213 | 102 | 3 | 69 | 281 | 98 | 297 | 6.81e-54 | 181 |
| Msa0025010 | AT5G62260.1 | 45.413 | 218 | 102 | 4 | 69 | 274 | 76 | 288 | 2.89e-53 | 181 |
| Msa0025010 | AT5G62260.3 | 45.413 | 218 | 102 | 4 | 69 | 274 | 76 | 288 | 2.89e-53 | 181 |
| Msa0025010 | AT2G33620.1 | 48.804 | 209 | 72 | 6 | 69 | 265 | 97 | 282 | 3.10e-50 | 172 |
| Msa0025010 | AT2G33620.4 | 48.804 | 209 | 72 | 6 | 69 | 265 | 97 | 282 | 3.10e-50 | 172 |
| Msa0025010 | AT2G33620.2 | 48.804 | 209 | 72 | 6 | 69 | 265 | 97 | 282 | 3.10e-50 | 172 |
| Msa0025010 | AT2G33620.3 | 48.804 | 209 | 72 | 6 | 69 | 265 | 97 | 282 | 3.10e-50 | 172 |
| Msa0025010 | AT5G62260.2 | 46.500 | 200 | 90 | 4 | 69 | 256 | 76 | 270 | 4.02e-50 | 170 |
| Msa0025010 | AT4G22770.2 | 48.444 | 225 | 98 | 7 | 69 | 284 | 72 | 287 | 2.75e-49 | 169 |
| Msa0025010 | AT4G22770.1 | 48.444 | 225 | 98 | 7 | 69 | 284 | 72 | 287 | 2.75e-49 | 169 |
| Msa0025010 | AT4G00200.2 | 47.619 | 252 | 94 | 5 | 43 | 283 | 36 | 260 | 3.84e-49 | 168 |
| Msa0025010 | AT4G00200.1 | 47.619 | 252 | 94 | 5 | 43 | 283 | 36 | 260 | 3.84e-49 | 168 |
| Msa0025010 | AT2G45850.3 | 47.872 | 188 | 85 | 3 | 69 | 256 | 98 | 272 | 8.59e-49 | 166 |
| Msa0025010 | AT1G63470.1 | 46.667 | 195 | 96 | 4 | 69 | 262 | 105 | 292 | 8.63e-46 | 161 |
| Msa0025010 | AT5G51590.1 | 44.978 | 229 | 81 | 6 | 69 | 263 | 78 | 295 | 1.27e-45 | 161 |
| Msa0025010 | AT3G61310.1 | 45.238 | 210 | 101 | 3 | 69 | 278 | 101 | 296 | 5.30e-44 | 155 |
| Msa0025010 | AT1G63480.2 | 41.121 | 214 | 103 | 5 | 69 | 276 | 99 | 295 | 5.15e-43 | 153 |
| Msa0025010 | AT1G63480.1 | 41.121 | 214 | 103 | 5 | 69 | 276 | 99 | 295 | 5.15e-43 | 153 |
| Msa0025010 | AT1G63480.5 | 41.121 | 214 | 103 | 5 | 69 | 276 | 93 | 289 | 5.49e-43 | 153 |
| Msa0025010 | AT1G63480.7 | 41.121 | 214 | 103 | 5 | 69 | 276 | 93 | 289 | 5.49e-43 | 153 |
| Msa0025010 | AT1G63480.4 | 41.121 | 214 | 103 | 5 | 69 | 276 | 93 | 289 | 5.49e-43 | 153 |
| Msa0025010 | AT1G63480.3 | 41.121 | 214 | 103 | 5 | 69 | 276 | 93 | 289 | 5.49e-43 | 153 |
| Msa0025010 | AT1G63480.6 | 41.121 | 214 | 103 | 5 | 69 | 276 | 93 | 289 | 5.49e-43 | 153 |
| Msa0025010 | AT4G17950.1 | 39.916 | 238 | 115 | 5 | 69 | 286 | 131 | 360 | 5.99e-40 | 147 |
| Msa0025010 | AT5G46640.1 | 40.639 | 219 | 95 | 6 | 69 | 269 | 102 | 303 | 1.86e-34 | 131 |
| Msa0025010 | AT3G04590.1 | 42.714 | 199 | 88 | 5 | 69 | 261 | 105 | 283 | 2.66e-34 | 129 |
| Msa0025010 | AT3G04590.2 | 42.714 | 199 | 88 | 5 | 69 | 261 | 105 | 283 | 2.19e-33 | 128 |
| Msa0025010 | AT2G36560.1 | 35.577 | 208 | 114 | 7 | 144 | 347 | 104 | 295 | 1.94e-26 | 110 |
| Msa0025010 | AT3G60870.1 | 41.026 | 117 | 63 | 2 | 145 | 261 | 86 | 196 | 2.95e-20 | 89.7 |
| Msa0025010 | AT2G45430.1 | 41.727 | 139 | 75 | 2 | 148 | 283 | 119 | 254 | 3.92e-18 | 84.7 |
| Msa0025010 | AT1G14490.2 | 34.559 | 136 | 86 | 2 | 145 | 277 | 49 | 184 | 1.80e-17 | 80.9 |
| Msa0025010 | AT1G14490.1 | 34.815 | 135 | 85 | 2 | 146 | 277 | 31 | 165 | 2.75e-17 | 80.1 |
| Msa0025010 | AT4G12050.1 | 40.000 | 125 | 72 | 1 | 148 | 272 | 148 | 269 | 5.99e-17 | 81.3 |
| Msa0025010 | AT5G49700.1 | 36.585 | 123 | 69 | 3 | 145 | 261 | 83 | 202 | 9.44e-17 | 80.1 |
| Msa0025010 | AT2G42940.1 | 43.966 | 116 | 59 | 3 | 148 | 262 | 83 | 193 | 9.32e-16 | 76.6 |
| Msa0025010 | AT1G76500.1 | 36.066 | 122 | 67 | 2 | 148 | 261 | 102 | 220 | 3.72e-15 | 75.9 |
| Msa0025010 | AT4G22810.1 | 39.370 | 127 | 72 | 2 | 148 | 272 | 135 | 258 | 4.48e-15 | 75.9 |
| Msa0025010 | AT5G28590.1 | 40.678 | 118 | 43 | 3 | 145 | 261 | 30 | 121 | 2.55e-14 | 72.0 |
| Msa0025010 | AT2G35270.1 | 37.594 | 133 | 79 | 2 | 148 | 280 | 108 | 236 | 3.63e-13 | 69.7 |
| Msa0025010 | AT3G55560.1 | 38.793 | 116 | 68 | 2 | 148 | 263 | 118 | 230 | 4.84e-13 | 69.7 |
| Msa0025010 | AT4G35390.1 | 38.261 | 115 | 67 | 2 | 148 | 261 | 93 | 204 | 8.54e-13 | 68.6 |
| Msa0025010 | AT4G17800.1 | 38.889 | 126 | 73 | 2 | 148 | 273 | 112 | 233 | 1.56e-12 | 67.8 |
| Msa0025010 | AT3G04570.1 | 39.695 | 131 | 69 | 2 | 148 | 271 | 110 | 237 | 3.22e-12 | 67.0 |
| Msa0025010 | AT4G14465.1 | 35.433 | 127 | 78 | 2 | 148 | 274 | 97 | 219 | 2.44e-11 | 64.3 |
Find 98 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTCAAGCTTTCCATTTC+TGG | 0.001701 | 1_1:-47974396 | Msa0025010:five_prime_UTR |
| CGTGCTGCTGTGACTATTTC+TGG | 0.182840 | 1_1:+47971220 | None:intergenic |
| TCTTCTTGTAACTTGGATTT+AGG | 0.193712 | 1_1:+47974072 | None:intergenic |
| CGCCATTTGAATACTCTTCT+TGG | 0.220102 | 1_1:-47974458 | Msa0025010:five_prime_UTR |
| ATTAGAAAGCAGTATTATTA+TGG | 0.265227 | 1_1:-47970412 | Msa0025010:three_prime_UTR |
| AACAACAACACCAGGAAGTT+TGG | 0.299197 | 1_1:-47974150 | Msa0025010:CDS |
| TGCTTCAATTCTTCTCTTAG+TGG | 0.311696 | 1_1:-47974481 | Msa0025010:five_prime_UTR |
| AACAGTATTGTAACTACTAT+TGG | 0.316379 | 1_1:-47974212 | Msa0025010:CDS |
| TTCTTTGCCTGATGAATAGA+TGG | 0.316756 | 1_1:-47971002 | Msa0025010:exon |
| ACAACAACAAGCCTCTTAAA+AGG | 0.320963 | 1_1:-47971288 | Msa0025010:CDS |
| AAGGGTCGTGGTAAATCAAC+TGG | 0.351381 | 1_1:-47973975 | Msa0025010:CDS |
| TGAATATTTGCTTGTGAGAT+AGG | 0.357972 | 1_1:+47971196 | None:intergenic |
| GCCTGATGAATAGATGGTTT+TGG | 0.366145 | 1_1:-47970996 | Msa0025010:intron |
| CCAGGAAGTTTGGATTTGTT+TGG | 0.373812 | 1_1:-47974140 | Msa0025010:CDS |
| CCAAACAAATCCAAACTTCC+TGG | 0.377742 | 1_1:+47974140 | None:intergenic |
| AAGAAAATATCATACTTGTA+TGG | 0.383243 | 1_1:+47972222 | None:intergenic |
| GGAAGCTGATGAGACATAAT+AGG | 0.397317 | 1_1:+47971154 | None:intergenic |
| ATCTCACAAGCAAATATTCA+TGG | 0.403263 | 1_1:-47971193 | Msa0025010:CDS |
| AAACATTGATAGATTCTCTC+TGG | 0.408364 | 1_1:+47971122 | None:intergenic |
| TTTGAGATACTATCTTTGTC+TGG | 0.410882 | 1_1:-47972370 | Msa0025010:CDS |
| AAACTTCCTGGTGTTGTTGT+TGG | 0.414109 | 1_1:+47974152 | None:intergenic |
| GGTCCTGACGGTCGAGTAAT+CGG | 0.416389 | 1_1:-47972280 | Msa0025010:CDS |
| CTAGGTCAACCTGGTTCTAC+TGG | 0.416830 | 1_1:-47973129 | Msa0025010:CDS |
| TCTTGAGTTGGGAGTTAGCT+AGG | 0.417449 | 1_1:-47970315 | Msa0025010:three_prime_UTR |
| CACCAAAAGAAGAAAATGTT+TGG | 0.425017 | 1_1:+47973940 | None:intergenic |
| GCTGGTGTTCTTATAGCTGC+TGG | 0.429689 | 1_1:-47972247 | Msa0025010:CDS |
| AGTTCTTATGCCACTATTGT+CGG | 0.434638 | 1_1:+47972333 | None:intergenic |
| TTAACAATCTTCTTGTAACT+TGG | 0.437261 | 1_1:+47974065 | None:intergenic |
| CCACTCCTGATGATGATACT+TGG | 0.440882 | 1_1:-47971075 | Msa0025010:CDS |
| AGAAAATATCATACTTGTAT+GGG | 0.443003 | 1_1:+47972223 | None:intergenic |
| GATTCTCTCTGGATTTGATC+AGG | 0.443447 | 1_1:+47971133 | None:intergenic |
| TCTTTATATATTGTTTCTCA+TGG | 0.446469 | 1_1:-47974339 | Msa0025010:exon |
| ACCAAAACCATCTATTCATC+AGG | 0.449295 | 1_1:+47970995 | None:intergenic |
| AACCAAGAAGAGTATTCAAA+TGG | 0.450734 | 1_1:+47974456 | None:intergenic |
| AACTTTAGAGATTGCTCCAT+TGG | 0.453949 | 1_1:+47973155 | None:intergenic |
| GTGGCTTCTCCAACTTCAAC+TGG | 0.454329 | 1_1:-47971244 | Msa0025010:CDS |
| AAGAATTGAAGCAGTAGTAC+TGG | 0.466129 | 1_1:+47974491 | None:intergenic |
| GGCAAAGAAATATTGATGTC+AGG | 0.467800 | 1_1:+47971016 | None:intergenic |
| CTTTCCATTTCTGGAAACAA+AGG | 0.471831 | 1_1:-47974387 | Msa0025010:five_prime_UTR |
| GGATTGAGCGTCTCGCTAGC+TGG | 0.473829 | 1_1:-47972301 | Msa0025010:CDS |
| AAATCCACAGCAGCTGTGCT+TGG | 0.476159 | 1_1:+47973416 | None:intergenic |
| CTGTTCCAAGTATCATCATC+AGG | 0.478067 | 1_1:+47971070 | None:intergenic |
| GAAAGAATACATATTCCTCT+TGG | 0.479921 | 1_1:+47973180 | None:intergenic |
| TCTTGGTTTCAGATTGTAGT+GGG | 0.483076 | 1_1:-47971331 | Msa0025010:intron |
| TTTGTCACTTTGTAGGATGT+TGG | 0.483338 | 1_1:-47973234 | Msa0025010:intron |
| ATTTCTGGACCAGTTGAAGT+TGG | 0.494397 | 1_1:+47971235 | None:intergenic |
| CGGAATTTGTGATGACAACT+AGG | 0.496503 | 1_1:-47970464 | Msa0025010:three_prime_UTR |
| GTAATCGGAGGTGCTGTTGC+TGG | 0.497506 | 1_1:-47972265 | Msa0025010:CDS |
| GTTGTTGTTGGTGTGACTGT+TGG | 0.501545 | 1_1:+47974164 | None:intergenic |
| CAGTAGTACTGGTAGGGAAG+AGG | 0.501800 | 1_1:+47974502 | None:intergenic |
| AACAACAGCAATGTTTCAGT+TGG | 0.502217 | 1_1:-47974302 | Msa0025010:CDS |
| ATATGTATTCTTTCTGCCAA+TGG | 0.503403 | 1_1:-47973171 | Msa0025010:CDS |
| GTGGGGAGCTTCGTGTCAAA+TGG | 0.505548 | 1_1:-47971313 | Msa0025010:CDS |
| ATGTTCATGTTCATTTCTTG+AGG | 0.510057 | 1_1:+47974245 | None:intergenic |
| CCAAGAAAATATGATGCTGA+TGG | 0.513931 | 1_1:-47974098 | Msa0025010:CDS |
| GTCACACCAACAACAACACC+AGG | 0.516153 | 1_1:-47974158 | Msa0025010:CDS |
| ATCTTTGTCTGGATCTTACA+CGG | 0.516175 | 1_1:-47972359 | Msa0025010:CDS |
| GTTTCCAAGCACAGCTGCTG+TGG | 0.518458 | 1_1:-47973420 | Msa0025010:CDS |
| TACACGGCTTCCGACAATAG+TGG | 0.519167 | 1_1:-47972343 | Msa0025010:CDS |
| CCTGGTGGTGATGTTAGTAT+TGG | 0.530826 | 1_1:+47974032 | None:intergenic |
| ACAACAGCAATGTTTCAGTT+GGG | 0.533238 | 1_1:-47974301 | Msa0025010:CDS |
| GGTGATGTTAGTATTGGTGT+TGG | 0.537464 | 1_1:+47974038 | None:intergenic |
| ATGAACATGAACATAAGTGT+TGG | 0.538632 | 1_1:-47974236 | Msa0025010:CDS |
| CCTCCGATTACTCGACCGTC+AGG | 0.542913 | 1_1:+47972277 | None:intergenic |
| TGAAATGAGAGAAAAGTGAA+AGG | 0.550103 | 1_1:+47974412 | None:intergenic |
| GTCTCGCTAGCTGGTCCTGA+CGG | 0.552110 | 1_1:-47972292 | Msa0025010:CDS |
| GTCACTTTGTAGGATGTTGG+TGG | 0.552302 | 1_1:-47973231 | Msa0025010:intron |
| TTTGTAGACAAAGTGAATCC+TGG | 0.553687 | 1_1:+47974014 | None:intergenic |
| ATTGAAGCAGTAGTACTGGT+AGG | 0.553919 | 1_1:+47974495 | None:intergenic |
| CATGTAATCACAGTTTATGC+AGG | 0.557312 | 1_1:-47973386 | Msa0025010:CDS |
| TTGAAGCAGTAGTACTGGTA+GGG | 0.558052 | 1_1:+47974496 | None:intergenic |
| CTGATGAATATTCAGATCAA+AGG | 0.560465 | 1_1:-47971045 | Msa0025010:CDS |
| TTGGGAGTTAGCTAGGTCCA+TGG | 0.583032 | 1_1:-47970308 | Msa0025010:three_prime_UTR |
| TTTGTTGTTGCTAGTTCTTG+TGG | 0.587630 | 1_1:+47974275 | None:intergenic |
| GGCATAAGAACTCGTGAGGG+TGG | 0.588092 | 1_1:-47972322 | Msa0025010:CDS |
| TTCTTGGTTTCAGATTGTAG+TGG | 0.588884 | 1_1:-47971332 | Msa0025010:intron |
| GAAAATATCATACTTGTATG+GGG | 0.602829 | 1_1:+47972224 | None:intergenic |
| AGGTAATGGAGAGGCTGACA+TGG | 0.609701 | 1_1:-47970507 | Msa0025010:three_prime_UTR |
| CTTGGTTTCAGATTGTAGTG+GGG | 0.614189 | 1_1:-47971330 | Msa0025010:intron |
| TAGTGGCATAAGAACTCGTG+AGG | 0.614495 | 1_1:-47972326 | Msa0025010:CDS |
| AAAGTTGCACTAGGTCAACC+TGG | 0.616623 | 1_1:-47973138 | Msa0025010:CDS |
| TGGAGAGGCTGACATGGTAA+CGG | 0.618201 | 1_1:-47970501 | Msa0025010:three_prime_UTR |
| AATCACAGTTTATGCAGGAG+AGG | 0.637801 | 1_1:-47973381 | Msa0025010:intron |
| CCAAGTATCATCATCAGGAG+TGG | 0.638537 | 1_1:+47971075 | None:intergenic |
| GCAATCTCTAAAGTTGCACT+AGG | 0.638595 | 1_1:-47973147 | Msa0025010:CDS |
| CCAATACTAACATCACCACC+AGG | 0.647483 | 1_1:-47974032 | Msa0025010:CDS |
| TCTGATTTCAGGTAATGGAG+AGG | 0.652237 | 1_1:-47970516 | Msa0025010:intron |
| AAGCCACTGTTTGTTCACGT+TGG | 0.653220 | 1_1:+47971260 | None:intergenic |
| ATGCTACCACCAGTAGAACC+AGG | 0.659895 | 1_1:+47973120 | None:intergenic |
| TTTGCACAGAAGAGTCCAAG+AGG | 0.677413 | 1_1:-47973195 | Msa0025010:CDS |
| GGTCAACCTGGTTCTACTGG+TGG | 0.677585 | 1_1:-47973126 | Msa0025010:CDS |
| CCTGACGGTCGAGTAATCGG+AGG | 0.685399 | 1_1:-47972277 | Msa0025010:CDS |
| AGTGGCATAAGAACTCGTGA+GGG | 0.694545 | 1_1:-47972325 | Msa0025010:CDS |
| GCATAAACTGTGATTACATG+TGG | 0.695853 | 1_1:+47973389 | None:intergenic |
| AGGGTCGTGGTAAATCAACT+GGG | 0.700074 | 1_1:-47973974 | Msa0025010:CDS |
| GTACCAACGTGAACAAACAG+TGG | 0.714692 | 1_1:-47971263 | Msa0025010:CDS |
| TAACGGAATGAAACTAACAG+CGG | 0.790419 | 1_1:-47970484 | Msa0025010:three_prime_UTR |
| GTAGACAAAGTGAATCCTGG+TGG | 0.798474 | 1_1:+47974017 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACTAATTTACATTATTA+GGG | + | chr1_1:47971148-47971167 | None:intergenic | 10.0% |
| !!! | TTTATTTTTTTTACTTGTAA+TGG | - | chr1_1:47971190-47971209 | Msa0025010:CDS | 10.0% |
| !! | AAAATATTTATTCATAACAA+TGG | - | chr1_1:47972638-47972657 | Msa0025010:intron | 10.0% |
| !! | AAATATTTATTCATAACAAT+GGG | - | chr1_1:47972639-47972658 | Msa0025010:intron | 10.0% |
| !! | CATAACTAATTTACATTATT+AGG | + | chr1_1:47971149-47971168 | None:intergenic | 15.0% |
| !! | GTTTGTGAAATAATTAATTT+AGG | - | chr1_1:47971309-47971328 | Msa0025010:CDS | 15.0% |
| !!! | AATACTATATATGCTTTATT+TGG | + | chr1_1:47973405-47973424 | None:intergenic | 15.0% |
| !!! | TCTTTATATATTGTTTCTCA+TGG | - | chr1_1:47970487-47970506 | Msa0025010:three_prime_UTR | 20.0% |
| !! | AAAAAGAAGAAGAAAAACAT+GGG | + | chr1_1:47970955-47970974 | None:intergenic | 20.0% |
| !!! | TTCTTCTTTTTCTTTACAAT+GGG | - | chr1_1:47970964-47970983 | Msa0025010:intron | 20.0% |
| !!! | TTTTTCATCTCTTAGTTTAT+AGG | - | chr1_1:47971061-47971080 | Msa0025010:CDS | 20.0% |
| !!! | TTTTCATCTCTTAGTTTATA+GGG | - | chr1_1:47971062-47971081 | Msa0025010:CDS | 20.0% |
| !! | CATAAAAAAACAAATTCACA+CGG | + | chr1_1:47971270-47971289 | None:intergenic | 20.0% |
| !!! | ATATTATTTTGTCACTTTGT+AGG | - | chr1_1:47971585-47971604 | Msa0025010:intron | 20.0% |
| !!! | ATATTTTTCCCTTTAATTGT+TGG | - | chr1_1:47971777-47971796 | Msa0025010:intron | 20.0% |
| !! | AAATTGAACCAACAATTAAA+GGG | + | chr1_1:47971788-47971807 | None:intergenic | 20.0% |
| !! | AAAATTGAACCAACAATTAA+AGG | + | chr1_1:47971789-47971808 | None:intergenic | 20.0% |
| !! | GAAAATAATACTATTGTTCA+AGG | + | chr1_1:47971824-47971843 | None:intergenic | 20.0% |
| !!! | TGAACAATAGTATTATTTTC+TGG | - | chr1_1:47971824-47971843 | Msa0025010:intron | 20.0% |
| !!! | AACATTTTTAGCTAACAAAT+AGG | + | chr1_1:47971981-47972000 | None:intergenic | 20.0% |
| !!! | ACATTTTGCAATTTTATACT+AGG | + | chr1_1:47972120-47972139 | None:intergenic | 20.0% |
| !! | AAAAGAGTAATAACAATAAC+AGG | + | chr1_1:47972360-47972379 | None:intergenic | 20.0% |
| !!! | TTACATTCTAAAAATTGTGA+TGG | - | chr1_1:47972378-47972397 | Msa0025010:CDS | 20.0% |
| !! | AGAAAATATCATACTTGTAT+GGG | + | chr1_1:47972606-47972625 | None:intergenic | 20.0% |
| !! | AAGAAAATATCATACTTGTA+TGG | + | chr1_1:47972607-47972626 | None:intergenic | 20.0% |
| !! | ACCAACTGATAAATATAAAA+TGG | + | chr1_1:47973086-47973105 | None:intergenic | 20.0% |
| !! | AAAATTGGATATAAAGTGAT+AGG | + | chr1_1:47973125-47973144 | None:intergenic | 20.0% |
| !! | TTATGTATTTATTTCAGCTA+TGG | + | chr1_1:47973452-47973471 | None:intergenic | 20.0% |
| !!! | TGTTTTTTAATTCTGATTTC+AGG | - | chr1_1:47974299-47974318 | Msa0025010:CDS | 20.0% |
| !! | ATTAGAAAGCAGTATTATTA+TGG | - | chr1_1:47974414-47974433 | Msa0025010:five_prime_UTR | 20.0% |
| ! | AACAGTATTGTAACTACTAT+TGG | - | chr1_1:47970614-47970633 | Msa0025010:intron | 25.0% |
| ! | TTAACAATCTTCTTGTAACT+TGG | + | chr1_1:47970764-47970783 | None:intergenic | 25.0% |
| !! | TACCAAACATTTTCTTCTTT+TGG | - | chr1_1:47970884-47970903 | Msa0025010:intron | 25.0% |
| ! | GAAAAAGAAGAAGAAAAACA+TGG | + | chr1_1:47970956-47970975 | None:intergenic | 25.0% |
| !! | CTTCTTCTTTTTCTTTACAA+TGG | - | chr1_1:47970963-47970982 | Msa0025010:intron | 25.0% |
| !!! | AATGGCTAAATTTTTGAGTT+AGG | - | chr1_1:47971208-47971227 | Msa0025010:CDS | 25.0% |
| !!! | ATGGCTAAATTTTTGAGTTA+GGG | - | chr1_1:47971209-47971228 | Msa0025010:CDS | 25.0% |
| !! | TTTGTGTGTTGTAATTTTGA+AGG | - | chr1_1:47971377-47971396 | Msa0025010:intron | 25.0% |
| !!! | TGAAGTTTTAACAGATCTAT+AGG | - | chr1_1:47971539-47971558 | Msa0025010:intron | 25.0% |
| ! | TTTAACAGATCTATAGGATT+TGG | - | chr1_1:47971545-47971564 | Msa0025010:intron | 25.0% |
| ! | TGAGAACTAATTCTACTAAA+TGG | - | chr1_1:47972030-47972049 | Msa0025010:intron | 25.0% |
| ! | GAGAACTAATTCTACTAAAT+GGG | - | chr1_1:47972031-47972050 | Msa0025010:intron | 25.0% |
| ! | CTTAGAGTAATTACTCAATT+TGG | - | chr1_1:47972068-47972087 | Msa0025010:intron | 25.0% |
| !!! | TCATTAAGTTGGTAATATTG+TGG | + | chr1_1:47972207-47972226 | None:intergenic | 25.0% |
| ! | TAAGAATGTCTTCATTAAGT+TGG | + | chr1_1:47972218-47972237 | None:intergenic | 25.0% |
| ! | GAAAATATCATACTTGTATG+GGG | + | chr1_1:47972605-47972624 | None:intergenic | 25.0% |
| !! | TTTATTCATAACAATGGGTT+TGG | - | chr1_1:47972644-47972663 | Msa0025010:intron | 25.0% |
| ! | AAACTATCTCAAACTAAAGT+AGG | - | chr1_1:47972769-47972788 | Msa0025010:intron | 25.0% |
| !!! | GCCATTTTATATTTATCAGT+TGG | - | chr1_1:47973082-47973101 | Msa0025010:intron | 25.0% |
| ! | TAGTGAATAAGCTAGAAAAT+TGG | + | chr1_1:47973140-47973159 | None:intergenic | 25.0% |
| !!! | TTTTCTAGCTTATTCACTAT+CGG | - | chr1_1:47973141-47973160 | Msa0025010:CDS | 25.0% |
| ! | GCATATATAGTATTTGATTG+AGG | - | chr1_1:47973411-47973430 | Msa0025010:CDS | 25.0% |
| ! | TAATCTTCTTAACACATTCT+TGG | - | chr1_1:47973478-47973497 | Msa0025010:intron | 25.0% |
| !! | TTAATTCTGATTTCAGGTAA+TGG | - | chr1_1:47974305-47974324 | Msa0025010:CDS | 25.0% |
| !!! | GACATTTTTAGTTATTCTGT+TGG | - | chr1_1:47974552-47974571 | Msa0025010:five_prime_UTR | 25.0% |
| !! | AACCAAGAAGAGTATTCAAA+TGG | + | chr1_1:47970373-47970392 | None:intergenic | 30.0% |
| TGAAATGAGAGAAAAGTGAA+AGG | + | chr1_1:47970417-47970436 | None:intergenic | 30.0% | |
| !! | TTTTCCTTTGTTTCCAGAAA+TGG | + | chr1_1:47970446-47970465 | None:intergenic | 30.0% |
| ATGTTCATGTTCATTTCTTG+AGG | + | chr1_1:47970584-47970603 | None:intergenic | 30.0% | |
| ATGAACATGAACATAAGTGT+TGG | - | chr1_1:47970590-47970609 | Msa0025010:intron | 30.0% | |
| TTGTTTGGTAAGAAAAAGAG+AGG | - | chr1_1:47970701-47970720 | Msa0025010:intron | 30.0% | |
| TCTTCTTGTAACTTGGATTT+AGG | + | chr1_1:47970757-47970776 | None:intergenic | 30.0% | |
| ! | AAATGAGTTTTCCTCCAAAA+AGG | - | chr1_1:47970832-47970851 | Msa0025010:intron | 30.0% |
| ! | AATGAGTTTTCCTCCAAAAA+GGG | - | chr1_1:47970833-47970852 | Msa0025010:intron | 30.0% |
| CACCAAAAGAAGAAAATGTT+TGG | + | chr1_1:47970889-47970908 | None:intergenic | 30.0% | |
| TTGTACCCAAAATGTTTGAT+GGG | - | chr1_1:47971004-47971023 | Msa0025010:exon | 30.0% | |
| ! | AACTACCCATCAAACATTTT+GGG | + | chr1_1:47971012-47971031 | None:intergenic | 30.0% |
| ! | AAACTACCCATCAAACATTT+TGG | + | chr1_1:47971013-47971032 | None:intergenic | 30.0% |
| !! | AATGTTTGATGGGTAGTTTT+TGG | - | chr1_1:47971014-47971033 | Msa0025010:CDS | 30.0% |
| ! | TCTCTTAGTTTATAGGGTTT+TGG | - | chr1_1:47971068-47971087 | Msa0025010:CDS | 30.0% |
| ! | CTCTTAGTTTATAGGGTTTT+GGG | - | chr1_1:47971069-47971088 | Msa0025010:CDS | 30.0% |
| !!! | AATTTTTGAGTTAGGGTTCA+AGG | - | chr1_1:47971216-47971235 | Msa0025010:CDS | 30.0% |
| GAAAGAATACATATTCCTCT+TGG | + | chr1_1:47971649-47971668 | None:intergenic | 30.0% | |
| ATATGTATTCTTTCTGCCAA+TGG | - | chr1_1:47971655-47971674 | Msa0025010:intron | 30.0% | |
| CTAAGTATAGAGTATGGAAA+TGG | - | chr1_1:47971864-47971883 | Msa0025010:intron | 30.0% | |
| TACCTACTGTTGACATATAT+GGG | + | chr1_1:47971890-47971909 | None:intergenic | 30.0% | |
| AGACAGATTATCTGACAATT+AGG | + | chr1_1:47971913-47971932 | None:intergenic | 30.0% | |
| CATCTTTGACATTATTCACA+TGG | - | chr1_1:47972169-47972188 | Msa0025010:intron | 30.0% | |
| TTAATGCCCTATTTACTTTC+AGG | - | chr1_1:47972428-47972447 | Msa0025010:intron | 30.0% | |
| TAATGCCCTATTTACTTTCA+GGG | - | chr1_1:47972429-47972448 | Msa0025010:intron | 30.0% | |
| ! | TTTGAGATACTATCTTTGTC+TGG | - | chr1_1:47972456-47972475 | Msa0025010:intron | 30.0% |
| ! | TGCATGATATGTAGAGTATT+TGG | - | chr1_1:47972817-47972836 | Msa0025010:intron | 30.0% |
| ! | GCATGATATGTAGAGTATTT+GGG | - | chr1_1:47972818-47972837 | Msa0025010:intron | 30.0% |
| TGATTGCATTCATAACACTA+TGG | - | chr1_1:47972844-47972863 | Msa0025010:intron | 30.0% | |
| TATGCTATACACTAGTTGTT+CGG | + | chr1_1:47972885-47972904 | None:intergenic | 30.0% | |
| ATGATCGAAGTACAACTATT+TGG | - | chr1_1:47972912-47972931 | Msa0025010:intron | 30.0% | |
| GAAGTACAACTATTTGGTAA+TGG | - | chr1_1:47972918-47972937 | Msa0025010:intron | 30.0% | |
| !! | CAAGCTTTTAGTGTTTTTTG+AGG | - | chr1_1:47972949-47972968 | Msa0025010:intron | 30.0% |
| !!! | AATCGTAAGTTTTGATTCAC+GGG | + | chr1_1:47973309-47973328 | None:intergenic | 30.0% |
| !!! | GAATCGTAAGTTTTGATTCA+CGG | + | chr1_1:47973310-47973329 | None:intergenic | 30.0% |
| TGAATATTTGCTTGTGAGAT+AGG | + | chr1_1:47973633-47973652 | None:intergenic | 30.0% | |
| ATCTCACAAGCAAATATTCA+TGG | - | chr1_1:47973633-47973652 | Msa0025010:intron | 30.0% | |
| AAACATTGATAGATTCTCTC+TGG | + | chr1_1:47973707-47973726 | None:intergenic | 30.0% | |
| CTGATGAATATTCAGATCAA+AGG | - | chr1_1:47973781-47973800 | Msa0025010:intron | 30.0% | |
| GTTTCATGTCACTAATATGA+CGG | - | chr1_1:47973877-47973896 | Msa0025010:intron | 30.0% | |
| TACTATAAGCTTCTACCTAA+AGG | + | chr1_1:47973962-47973981 | None:intergenic | 30.0% | |
| TATAGTATTACTCGTCTTCA+CGG | - | chr1_1:47973975-47973994 | Msa0025010:CDS | 30.0% | |
| AACAGTTACAACAAGATGAA+GGG | + | chr1_1:47974283-47974302 | None:intergenic | 30.0% | |
| AAACAGTTACAACAAGATGA+AGG | + | chr1_1:47974284-47974303 | None:intergenic | 30.0% | |
| !!! | TCTTTGTTTTCTTCTTGAGT+TGG | - | chr1_1:47974499-47974518 | Msa0025010:five_prime_UTR | 30.0% |
| !!! | CTTTGTTTTCTTCTTGAGTT+GGG | - | chr1_1:47974500-47974519 | Msa0025010:five_prime_UTR | 30.0% |
| !! | AATGTCTTTTGATAACTCCA+TGG | + | chr1_1:47974538-47974557 | None:intergenic | 30.0% |
| AAGAATTGAAGCAGTAGTAC+TGG | + | chr1_1:47970338-47970357 | None:intergenic | 35.0% | |
| TGCTTCAATTCTTCTCTTAG+TGG | - | chr1_1:47970345-47970364 | Msa0025010:three_prime_UTR | 35.0% | |
| CATTTCAAGCTTTCCATTTC+TGG | - | chr1_1:47970430-47970449 | Msa0025010:three_prime_UTR | 35.0% | |
| ! | CTTTCCATTTCTGGAAACAA+AGG | - | chr1_1:47970439-47970458 | Msa0025010:three_prime_UTR | 35.0% |
| AACAACAGCAATGTTTCAGT+TGG | - | chr1_1:47970524-47970543 | Msa0025010:intron | 35.0% | |
| ACAACAGCAATGTTTCAGTT+GGG | - | chr1_1:47970525-47970544 | Msa0025010:intron | 35.0% | |
| !! | TTTGTTGTTGCTAGTTCTTG+TGG | + | chr1_1:47970554-47970573 | None:intergenic | 35.0% |
| ! | CCATCAGCATCATATTTTCT+TGG | + | chr1_1:47970731-47970750 | None:intergenic | 35.0% |
| CCAAGAAAATATGATGCTGA+TGG | - | chr1_1:47970728-47970747 | Msa0025010:intron | 35.0% | |
| TTTGTAGACAAAGTGAATCC+TGG | + | chr1_1:47970815-47970834 | None:intergenic | 35.0% | |
| GAAGAAGAAAAACATGGGTA+AGG | + | chr1_1:47970950-47970969 | None:intergenic | 35.0% | |
| CTTGTACCCAAAATGTTTGA+TGG | - | chr1_1:47971003-47971022 | Msa0025010:exon | 35.0% | |
| !! | GTGTTGTAATTTTGAAGGTG+AGG | - | chr1_1:47971382-47971401 | Msa0025010:intron | 35.0% |
| GCATAAACTGTGATTACATG+TGG | + | chr1_1:47971440-47971459 | None:intergenic | 35.0% | |
| CATGTAATCACAGTTTATGC+AGG | - | chr1_1:47971440-47971459 | Msa0025010:intron | 35.0% | |
| !! | TTTGTCACTTTGTAGGATGT+TGG | - | chr1_1:47971592-47971611 | Msa0025010:intron | 35.0% |
| ! | AACTTTAGAGATTGCTCCAT+TGG | + | chr1_1:47971674-47971693 | None:intergenic | 35.0% |
| CTTCTGCTAAGTATAGAGTA+TGG | - | chr1_1:47971858-47971877 | Msa0025010:intron | 35.0% | |
| GTACCTACTGTTGACATATA+TGG | + | chr1_1:47971891-47971910 | None:intergenic | 35.0% | |
| TTGTCTCTACTTGAAGTTGA+AGG | - | chr1_1:47971937-47971956 | Msa0025010:intron | 35.0% | |
| TGTCTCTACTTGAAGTTGAA+GGG | - | chr1_1:47971938-47971957 | Msa0025010:intron | 35.0% | |
| AAAGATGCAAATCTGACAAC+GGG | + | chr1_1:47972156-47972175 | None:intergenic | 35.0% | |
| CAAAGATGCAAATCTGACAA+CGG | + | chr1_1:47972157-47972176 | None:intergenic | 35.0% | |
| ATCTTTGTCTGGATCTTACA+CGG | - | chr1_1:47972467-47972486 | Msa0025010:intron | 35.0% | |
| AGTTCTTATGCCACTATTGT+CGG | + | chr1_1:47972496-47972515 | None:intergenic | 35.0% | |
| ACTTGCAGTCAAATCTTGTA+GGG | + | chr1_1:47972711-47972730 | None:intergenic | 35.0% | |
| AACTTGCAGTCAAATCTTGT+AGG | + | chr1_1:47972712-47972731 | None:intergenic | 35.0% | |
| TAACTTATCCATCATCCTCA+CGG | - | chr1_1:47973205-47973224 | Msa0025010:CDS | 35.0% | |
| !!! | AGGGATATTTTTTGACTCGT+GGG | + | chr1_1:47973260-47973279 | None:intergenic | 35.0% |
| TTCTTGGTTTCAGATTGTAG+TGG | - | chr1_1:47973494-47973513 | Msa0025010:intron | 35.0% | |
| TCTTGGTTTCAGATTGTAGT+GGG | - | chr1_1:47973495-47973514 | Msa0025010:intron | 35.0% | |
| ACAACAACAAGCCTCTTAAA+AGG | - | chr1_1:47973538-47973557 | Msa0025010:intron | 35.0% | |
| GGCAAAGAAATATTGATGTC+AGG | + | chr1_1:47973813-47973832 | None:intergenic | 35.0% | |
| TTCTTTGCCTGATGAATAGA+TGG | - | chr1_1:47973824-47973843 | Msa0025010:intron | 35.0% | |
| ACCAAAACCATCTATTCATC+AGG | + | chr1_1:47973834-47973853 | None:intergenic | 35.0% | |
| TCACTAATATGACGGCTTTA+AGG | - | chr1_1:47973885-47973904 | Msa0025010:intron | 35.0% | |
| ! | CACTAATATGACGGCTTTAA+GGG | - | chr1_1:47973886-47973905 | Msa0025010:intron | 35.0% |
| ! | TGCTTGATGTCATTTCCTTT+AGG | - | chr1_1:47973944-47973963 | Msa0025010:CDS | 35.0% |
| GAATGAGATGATGATCTAGT+TGG | - | chr1_1:47974002-47974021 | Msa0025010:CDS | 35.0% | |
| !! | TGATCTAGTTGGTGTTAGTT+CGG | - | chr1_1:47974013-47974032 | Msa0025010:CDS | 35.0% |
| AATGTAAGCAATTGCTTGGA+TGG | + | chr1_1:47974249-47974268 | None:intergenic | 35.0% | |
| TAGGAATGTAAGCAATTGCT+TGG | + | chr1_1:47974253-47974272 | None:intergenic | 35.0% | |
| ACAGTTACAACAAGATGAAG+GGG | + | chr1_1:47974282-47974301 | None:intergenic | 35.0% | |
| TAACGGAATGAAACTAACAG+CGG | - | chr1_1:47974342-47974361 | Msa0025010:exon | 35.0% | |
| !! | TTGAAGCAGTAGTACTGGTA+GGG | + | chr1_1:47970333-47970352 | None:intergenic | 40.0% |
| !! | ATTGAAGCAGTAGTACTGGT+AGG | + | chr1_1:47970334-47970353 | None:intergenic | 40.0% |
| CGCCATTTGAATACTCTTCT+TGG | - | chr1_1:47970368-47970387 | Msa0025010:three_prime_UTR | 40.0% | |
| !! | AAACTTCCTGGTGTTGTTGT+TGG | + | chr1_1:47970677-47970696 | None:intergenic | 40.0% |
| AACAACAACACCAGGAAGTT+TGG | - | chr1_1:47970676-47970695 | Msa0025010:intron | 40.0% | |
| CCAAACAAATCCAAACTTCC+TGG | + | chr1_1:47970689-47970708 | None:intergenic | 40.0% | |
| ! | CCAGGAAGTTTGGATTTGTT+TGG | - | chr1_1:47970686-47970705 | Msa0025010:intron | 40.0% |
| !! | GGTGATGTTAGTATTGGTGT+TGG | + | chr1_1:47970791-47970810 | None:intergenic | 40.0% |
| ! | TGATTTACCACGACCCTTTT+TGG | + | chr1_1:47970849-47970868 | None:intergenic | 40.0% |
| ! | TTTGAGTTAGGGTTCAAGGT+CGG | - | chr1_1:47971220-47971239 | Msa0025010:CDS | 40.0% |
| AATCACAGTTTATGCAGGAG+AGG | - | chr1_1:47971445-47971464 | Msa0025010:intron | 40.0% | |
| !! | GCAATCTCTAAAGTTGCACT+AGG | - | chr1_1:47971679-47971698 | Msa0025010:intron | 40.0% |
| !! | TGGTAGCATTTTGACGTATG+AGG | - | chr1_1:47971720-47971739 | Msa0025010:intron | 40.0% |
| TCTACTTGAAGTTGAAGGGT+TGG | - | chr1_1:47971942-47971961 | Msa0025010:intron | 40.0% | |
| CACTTGAGCTAATCTCATGA+TGG | + | chr1_1:47972008-47972027 | None:intergenic | 40.0% | |
| TAGAACTGAGACAGAGAAAC+AGG | + | chr1_1:47972300-47972319 | None:intergenic | 40.0% | |
| ACCGTCCCTGAAAGTAAATA+GGG | + | chr1_1:47972437-47972456 | None:intergenic | 40.0% | |
| AACCGTCCCTGAAAGTAAAT+AGG | + | chr1_1:47972438-47972457 | None:intergenic | 40.0% | |
| AACTTATCCATCATCCTCAC+GGG | - | chr1_1:47973206-47973225 | Msa0025010:CDS | 40.0% | |
| !!! | CAGGGATATTTTTTGACTCG+TGG | + | chr1_1:47973261-47973280 | None:intergenic | 40.0% |
| ATAATTCGCGTGGCATTTGT+GGG | + | chr1_1:47973346-47973365 | None:intergenic | 40.0% | |
| AATAATTCGCGTGGCATTTG+TGG | + | chr1_1:47973347-47973366 | None:intergenic | 40.0% | |
| CTTGGTTTCAGATTGTAGTG+GGG | - | chr1_1:47973496-47973515 | Msa0025010:intron | 40.0% | |
| ! | CGTTGGTACTTCCTTTTAAG+AGG | + | chr1_1:47973552-47973571 | None:intergenic | 40.0% |
| ! | ATTTCTGGACCAGTTGAAGT+TGG | + | chr1_1:47973594-47973613 | None:intergenic | 40.0% |
| GGAAGCTGATGAGACATAAT+AGG | + | chr1_1:47973675-47973694 | None:intergenic | 40.0% | |
| GATTCTCTCTGGATTTGATC+AGG | + | chr1_1:47973696-47973715 | None:intergenic | 40.0% | |
| CTGTTCCAAGTATCATCATC+AGG | + | chr1_1:47973759-47973778 | None:intergenic | 40.0% | |
| ! | GCCTGATGAATAGATGGTTT+TGG | - | chr1_1:47973830-47973849 | Msa0025010:intron | 40.0% |
| GACATGAAACGTCATGTCAT+AGG | + | chr1_1:47973867-47973886 | None:intergenic | 40.0% | |
| !! | TAATATGACGGCTTTAAGGG+TGG | - | chr1_1:47973889-47973908 | Msa0025010:intron | 40.0% |
| CATCAAGCATTAGTACGACA+TGG | + | chr1_1:47973933-47973952 | None:intergenic | 40.0% | |
| CAAGATGAAGGGGAAAATGT+AGG | + | chr1_1:47974272-47974291 | None:intergenic | 40.0% | |
| !! | TCTGATTTCAGGTAATGGAG+AGG | - | chr1_1:47974310-47974329 | Msa0025010:CDS | 40.0% |
| CGGAATTTGTGATGACAACT+AGG | - | chr1_1:47974362-47974381 | Msa0025010:five_prime_UTR | 40.0% | |
| ! | GTTGTTGTTGGTGTGACTGT+TGG | + | chr1_1:47970665-47970684 | None:intergenic | 45.0% |
| ! | CCTGGTGGTGATGTTAGTAT+TGG | + | chr1_1:47970797-47970816 | None:intergenic | 45.0% |
| CCAATACTAACATCACCACC+AGG | - | chr1_1:47970794-47970813 | Msa0025010:intron | 45.0% | |
| GTAGACAAAGTGAATCCTGG+TGG | + | chr1_1:47970812-47970831 | None:intergenic | 45.0% | |
| ! | TTTTCCTCCAAAAAGGGTCG+TGG | - | chr1_1:47970839-47970858 | Msa0025010:intron | 45.0% |
| ! | TTTACCACGACCCTTTTTGG+AGG | + | chr1_1:47970846-47970865 | None:intergenic | 45.0% |
| AAGGGTCGTGGTAAATCAAC+TGG | - | chr1_1:47970851-47970870 | Msa0025010:intron | 45.0% | |
| AGGGTCGTGGTAAATCAACT+GGG | - | chr1_1:47970852-47970871 | Msa0025010:intron | 45.0% | |
| ! | GTCACTTTGTAGGATGTTGG+TGG | - | chr1_1:47971595-47971614 | Msa0025010:intron | 45.0% |
| TTTGCACAGAAGAGTCCAAG+AGG | - | chr1_1:47971631-47971650 | Msa0025010:intron | 45.0% | |
| AAAGTTGCACTAGGTCAACC+TGG | - | chr1_1:47971688-47971707 | Msa0025010:intron | 45.0% | |
| !! | GCATTTTGACGTATGAGGCA+TGG | - | chr1_1:47971725-47971744 | Msa0025010:intron | 45.0% |
| GGCCCATATATGTCAACAGT+AGG | - | chr1_1:47971885-47971904 | Msa0025010:intron | 45.0% | |
| GCCCTATTTACTTTCAGGGA+CGG | - | chr1_1:47972433-47972452 | Msa0025010:intron | 45.0% | |
| TAGTGGCATAAGAACTCGTG+AGG | - | chr1_1:47972500-47972519 | Msa0025010:intron | 45.0% | |
| AGTGGCATAAGAACTCGTGA+GGG | - | chr1_1:47972501-47972520 | Msa0025010:intron | 45.0% | |
| ! | CACTATGGCTCTGTTTGTCA+AGG | - | chr1_1:47972859-47972878 | Msa0025010:intron | 45.0% |
| AATTTGACCCGTGAGGATGA+TGG | + | chr1_1:47973216-47973235 | None:intergenic | 45.0% | |
| GGAACAAAATTTGACCCGTG+AGG | + | chr1_1:47973223-47973242 | None:intergenic | 45.0% | |
| AGCTTGAGCAATAATTCGCG+TGG | + | chr1_1:47973356-47973375 | None:intergenic | 45.0% | |
| GTACCAACGTGAACAAACAG+TGG | - | chr1_1:47973563-47973582 | Msa0025010:intron | 45.0% | |
| AAGCCACTGTTTGTTCACGT+TGG | + | chr1_1:47973569-47973588 | None:intergenic | 45.0% | |
| CCAAGTATCATCATCAGGAG+TGG | + | chr1_1:47973754-47973773 | None:intergenic | 45.0% | |
| ! | CCACTCCTGATGATGATACT+TGG | - | chr1_1:47973751-47973770 | Msa0025010:intron | 45.0% |
| !! | TCTTGAGTTGGGAGTTAGCT+AGG | - | chr1_1:47974511-47974530 | Msa0025010:five_prime_UTR | 45.0% |
| !! | AAAAAAAAAAAAAAAATGTA+AGG | + | chr1_1:47974440-47974459 | None:intergenic | 5.0% |
| !! | CAGTAGTACTGGTAGGGAAG+AGG | + | chr1_1:47970327-47970346 | None:intergenic | 50.0% |
| GTCACACCAACAACAACACC+AGG | - | chr1_1:47970668-47970687 | Msa0025010:intron | 50.0% | |
| AAATCCACAGCAGCTGTGCT+TGG | + | chr1_1:47971413-47971432 | None:intergenic | 50.0% | |
| !! | CTAGGTCAACCTGGTTCTAC+TGG | - | chr1_1:47971697-47971716 | Msa0025010:intron | 50.0% |
| ATGCTACCACCAGTAGAACC+AGG | + | chr1_1:47971709-47971728 | None:intergenic | 50.0% | |
| TACACGGCTTCCGACAATAG+TGG | - | chr1_1:47972483-47972502 | Msa0025010:intron | 50.0% | |
| GCTGGTGTTCTTATAGCTGC+TGG | - | chr1_1:47972579-47972598 | Msa0025010:intron | 50.0% | |
| !! | AAGCGAGGTGTGGTTTTGCA+GGG | + | chr1_1:47973279-47973298 | None:intergenic | 50.0% |
| GTGGCTTCTCCAACTTCAAC+TGG | - | chr1_1:47973582-47973601 | Msa0025010:intron | 50.0% | |
| ! | CGTGCTGCTGTGACTATTTC+TGG | + | chr1_1:47973609-47973628 | None:intergenic | 50.0% |
| !! | GGATGGAGAAGTGTCTCATG+TGG | + | chr1_1:47974232-47974251 | None:intergenic | 50.0% |
| !! | AGGTAATGGAGAGGCTGACA+TGG | - | chr1_1:47974319-47974338 | Msa0025010:CDS | 50.0% |
| TGGAGAGGCTGACATGGTAA+CGG | - | chr1_1:47974325-47974344 | Msa0025010:exon | 50.0% | |
| TTGGGAGTTAGCTAGGTCCA+TGG | - | chr1_1:47974518-47974537 | Msa0025010:five_prime_UTR | 50.0% | |
| GTTTCCAAGCACAGCTGCTG+TGG | - | chr1_1:47971406-47971425 | Msa0025010:intron | 55.0% | |
| !! | GGTCAACCTGGTTCTACTGG+TGG | - | chr1_1:47971700-47971719 | Msa0025010:intron | 55.0% |
| GGCATAAGAACTCGTGAGGG+TGG | - | chr1_1:47972504-47972523 | Msa0025010:intron | 55.0% | |
| GGTCCTGACGGTCGAGTAAT+CGG | - | chr1_1:47972546-47972565 | Msa0025010:intron | 55.0% | |
| !! | GTAATCGGAGGTGCTGTTGC+TGG | - | chr1_1:47972561-47972580 | Msa0025010:intron | 55.0% |
| TCGTGGGTCGTTGCTTACTC+GGG | + | chr1_1:47973244-47973263 | None:intergenic | 55.0% | |
| CTCGTGGGTCGTTGCTTACT+CGG | + | chr1_1:47973245-47973264 | None:intergenic | 55.0% | |
| !! | CAAGCGAGGTGTGGTTTTGC+AGG | + | chr1_1:47973280-47973299 | None:intergenic | 55.0% |
| GTGGGGAGCTTCGTGTCAAA+TGG | - | chr1_1:47973513-47973532 | Msa0025010:intron | 55.0% | |
| GTGTCTCATGTGGTCTGCAG+CGG | + | chr1_1:47974222-47974241 | None:intergenic | 55.0% | |
| GGATTGAGCGTCTCGCTAGC+TGG | - | chr1_1:47972525-47972544 | Msa0025010:intron | 60.0% | |
| GTCTCGCTAGCTGGTCCTGA+CGG | - | chr1_1:47972534-47972553 | Msa0025010:intron | 60.0% | |
| CCTCCGATTACTCGACCGTC+AGG | + | chr1_1:47972552-47972571 | None:intergenic | 60.0% | |
| CCTGACGGTCGAGTAATCGG+AGG | - | chr1_1:47972549-47972568 | Msa0025010:intron | 60.0% | |
| TTCACGGGTCGTGACAAGCG+AGG | + | chr1_1:47973294-47973313 | None:intergenic | 60.0% | |
| GGGTCGTGACAAGCGAGGTG+TGG | + | chr1_1:47973289-47973308 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 47970245 | 47974603 | 47970245 | ID=Msa0025010;Name=Msa0025010 |
| chr1_1 | mRNA | 47970245 | 47974603 | 47970245 | ID=Msa0025010-mRNA-1;Parent=Msa0025010;Name=Msa0025010-mRNA-1;_AED=0.11;_eAED=0.11;_QI=261|1|1|1|0.8|0.66|6|292|366 |
| chr1_1 | exon | 47970245 | 47970527 | 47970245 | ID=Msa0025010-mRNA-1:exon:13672;Parent=Msa0025010-mRNA-1 |
| chr1_1 | exon | 47970997 | 47971341 | 47970997 | ID=Msa0025010-mRNA-1:exon:13671;Parent=Msa0025010-mRNA-1 |
| chr1_1 | exon | 47972237 | 47972398 | 47972237 | ID=Msa0025010-mRNA-1:exon:13670;Parent=Msa0025010-mRNA-1 |
| chr1_1 | exon | 47973107 | 47973241 | 47973107 | ID=Msa0025010-mRNA-1:exon:13669;Parent=Msa0025010-mRNA-1 |
| chr1_1 | exon | 47973382 | 47973449 | 47973382 | ID=Msa0025010-mRNA-1:exon:13668;Parent=Msa0025010-mRNA-1 |
| chr1_1 | exon | 47973943 | 47974603 | 47973943 | ID=Msa0025010-mRNA-1:exon:13667;Parent=Msa0025010-mRNA-1 |
| chr1_1 | five_prime_UTR | 47974343 | 47974603 | 47974343 | ID=Msa0025010-mRNA-1:five_prime_utr;Parent=Msa0025010-mRNA-1 |
| chr1_1 | CDS | 47973943 | 47974342 | 47973943 | ID=Msa0025010-mRNA-1:cds;Parent=Msa0025010-mRNA-1 |
| chr1_1 | CDS | 47973382 | 47973449 | 47973382 | ID=Msa0025010-mRNA-1:cds;Parent=Msa0025010-mRNA-1 |
| chr1_1 | CDS | 47973107 | 47973241 | 47973107 | ID=Msa0025010-mRNA-1:cds;Parent=Msa0025010-mRNA-1 |
| chr1_1 | CDS | 47972237 | 47972398 | 47972237 | ID=Msa0025010-mRNA-1:cds;Parent=Msa0025010-mRNA-1 |
| chr1_1 | CDS | 47971006 | 47971341 | 47971006 | ID=Msa0025010-mRNA-1:cds;Parent=Msa0025010-mRNA-1 |
| chr1_1 | three_prime_UTR | 47970997 | 47971005 | 47970997 | ID=Msa0025010-mRNA-1:three_prime_utr;Parent=Msa0025010-mRNA-1 |
| chr1_1 | three_prime_UTR | 47970245 | 47970527 | 47970245 | ID=Msa0025010-mRNA-1:three_prime_utr;Parent=Msa0025010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
