Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072560 | XP_003590399.1 | 97.425 | 233 | 5 | 1 | 1 | 233 | 1 | 232 | 9.48e-168 | 471 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072560 | sp|Q9LZR0|ATB51_ARATH | 50.769 | 195 | 78 | 6 | 1 | 178 | 1 | 194 | 4.26e-48 | 161 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072560 | G7I9C4 | 97.425 | 233 | 5 | 1 | 1 | 233 | 1 | 232 | 4.53e-168 | 471 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0072560 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0072560 | Msa0751890 | 0.817824 | 2.698972e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072560 | MtrunA17_Chr7g0265521 | 56.735 | 245 | 81 | 11 | 1 | 233 | 1 | 232 | 8.48e-78 | 234 |
| Msa0072560 | MtrunA17_Chr1g0179581 | 98.198 | 111 | 1 | 1 | 32 | 142 | 1 | 110 | 5.51e-73 | 217 |
| Msa0072560 | MtrunA17_Chr1g0179591 | 68.939 | 132 | 36 | 1 | 102 | 233 | 3 | 129 | 4.48e-63 | 192 |
| Msa0072560 | MtrunA17_Chr6g0450991 | 56.863 | 102 | 37 | 1 | 59 | 153 | 66 | 167 | 3.20e-30 | 113 |
| Msa0072560 | MtrunA17_Chr4g0060031 | 50.420 | 119 | 52 | 1 | 49 | 160 | 84 | 202 | 1.47e-29 | 112 |
| Msa0072560 | MtrunA17_Chr6g0453021 | 55.670 | 97 | 43 | 0 | 54 | 150 | 90 | 186 | 3.16e-28 | 108 |
| Msa0072560 | MtrunA17_Chr8g0362151 | 55.670 | 97 | 36 | 1 | 57 | 146 | 74 | 170 | 6.96e-28 | 107 |
| Msa0072560 | MtrunA17_Chr3g0123691 | 38.764 | 178 | 87 | 5 | 55 | 221 | 55 | 221 | 7.40e-28 | 107 |
| Msa0072560 | MtrunA17_Chr8g0381741 | 40.645 | 155 | 79 | 4 | 48 | 189 | 39 | 193 | 1.73e-26 | 104 |
| Msa0072560 | MtrunA17_Chr5g0415941 | 54.128 | 109 | 39 | 2 | 58 | 155 | 85 | 193 | 2.32e-26 | 103 |
| Msa0072560 | MtrunA17_Chr5g0416391 | 56.180 | 89 | 39 | 0 | 59 | 147 | 76 | 164 | 2.90e-26 | 102 |
| Msa0072560 | MtrunA17_Chr3g0127511 | 49.038 | 104 | 45 | 2 | 62 | 158 | 40 | 142 | 2.61e-25 | 99.8 |
| Msa0072560 | MtrunA17_Chr8g0362751 | 53.608 | 97 | 38 | 1 | 60 | 149 | 89 | 185 | 2.72e-25 | 100 |
| Msa0072560 | MtrunA17_Chr3g0119291 | 41.722 | 151 | 79 | 3 | 59 | 207 | 58 | 201 | 4.10e-25 | 99.4 |
| Msa0072560 | MtrunA17_Chr7g0217111 | 54.639 | 97 | 37 | 1 | 58 | 147 | 78 | 174 | 2.39e-24 | 97.8 |
| Msa0072560 | MtrunA17_Chr8g0346251 | 42.308 | 130 | 56 | 3 | 64 | 183 | 45 | 165 | 4.17e-24 | 96.7 |
| Msa0072560 | MtrunA17_Chr5g0403701 | 44.340 | 106 | 59 | 0 | 55 | 160 | 48 | 153 | 8.21e-21 | 86.7 |
| Msa0072560 | MtrunA17_Chr4g0054421 | 48.315 | 89 | 46 | 0 | 60 | 148 | 127 | 215 | 1.73e-18 | 82.0 |
| Msa0072560 | MtrunA17_Chr7g0258831 | 45.161 | 93 | 51 | 0 | 60 | 152 | 160 | 252 | 2.18e-18 | 82.0 |
| Msa0072560 | MtrunA17_Chr5g0403691 | 42.478 | 113 | 58 | 1 | 55 | 160 | 48 | 160 | 2.38e-18 | 80.5 |
| Msa0072560 | MtrunA17_Chr4g0055851 | 38.971 | 136 | 66 | 3 | 60 | 187 | 120 | 246 | 2.91e-18 | 81.3 |
| Msa0072560 | MtrunA17_Chr1g0151971 | 43.119 | 109 | 55 | 2 | 47 | 148 | 110 | 218 | 1.14e-17 | 79.7 |
| Msa0072560 | MtrunA17_Chr1g0175651 | 44.944 | 89 | 49 | 0 | 60 | 148 | 154 | 242 | 1.78e-17 | 79.3 |
| Msa0072560 | MtrunA17_Chr5g0399491 | 47.191 | 89 | 47 | 0 | 60 | 148 | 136 | 224 | 6.35e-17 | 77.8 |
| Msa0072560 | MtrunA17_Chr8g0335131 | 46.067 | 89 | 48 | 0 | 60 | 148 | 146 | 234 | 8.10e-17 | 77.8 |
| Msa0072560 | MtrunA17_Chr2g0308611 | 43.820 | 89 | 50 | 0 | 60 | 148 | 200 | 288 | 1.10e-16 | 77.8 |
| Msa0072560 | MtrunA17_Chr4g0044091 | 44.681 | 94 | 52 | 0 | 55 | 148 | 60 | 153 | 1.76e-16 | 75.1 |
| Msa0072560 | MtrunA17_Chr5g0400781 | 43.820 | 89 | 50 | 0 | 60 | 148 | 123 | 211 | 2.05e-15 | 73.6 |
| Msa0072560 | MtrunA17_Chr4g0071411 | 44.186 | 86 | 48 | 0 | 63 | 148 | 91 | 176 | 2.70e-15 | 72.4 |
| Msa0072560 | MtrunA17_Chr3g0135331 | 43.820 | 89 | 50 | 0 | 60 | 148 | 145 | 233 | 1.18e-14 | 71.6 |
| Msa0072560 | MtrunA17_Chr2g0299031 | 42.697 | 89 | 51 | 0 | 60 | 148 | 82 | 170 | 3.37e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072560 | AT5G03790.1 | 50.769 | 195 | 78 | 6 | 1 | 178 | 1 | 194 | 4.33e-49 | 161 |
| Msa0072560 | AT5G03790.2 | 53.704 | 162 | 58 | 5 | 1 | 145 | 1 | 162 | 1.23e-42 | 143 |
| Msa0072560 | AT2G36610.1 | 49.162 | 179 | 65 | 7 | 7 | 162 | 5 | 180 | 1.95e-41 | 140 |
| Msa0072560 | AT4G40060.1 | 41.875 | 160 | 82 | 3 | 27 | 177 | 28 | 185 | 1.14e-31 | 117 |
| Msa0072560 | AT1G69780.1 | 44.755 | 143 | 66 | 1 | 57 | 199 | 82 | 211 | 1.31e-30 | 115 |
| Msa0072560 | AT5G15150.1 | 62.366 | 93 | 35 | 0 | 57 | 149 | 112 | 204 | 1.05e-29 | 113 |
| Msa0072560 | AT2G22430.1 | 54.455 | 101 | 39 | 1 | 56 | 149 | 58 | 158 | 1.01e-28 | 110 |
| Msa0072560 | AT5G65310.1 | 41.667 | 144 | 72 | 4 | 12 | 151 | 28 | 163 | 7.56e-28 | 108 |
| Msa0072560 | AT5G65310.2 | 41.667 | 144 | 72 | 4 | 12 | 151 | 10 | 145 | 8.11e-28 | 107 |
| Msa0072560 | AT3G01470.1 | 36.471 | 170 | 98 | 2 | 57 | 219 | 65 | 231 | 1.88e-27 | 106 |
| Msa0072560 | AT3G01220.1 | 53.211 | 109 | 44 | 1 | 57 | 158 | 84 | 192 | 1.88e-27 | 106 |
| Msa0072560 | AT2G46680.1 | 49.541 | 109 | 48 | 1 | 45 | 146 | 17 | 125 | 4.69e-27 | 104 |
| Msa0072560 | AT3G61890.1 | 39.264 | 163 | 70 | 3 | 63 | 214 | 33 | 177 | 6.52e-27 | 103 |
| Msa0072560 | AT2G46680.2 | 47.826 | 115 | 53 | 1 | 45 | 152 | 17 | 131 | 3.38e-26 | 102 |
| Msa0072560 | AT1G26960.1 | 42.958 | 142 | 60 | 3 | 57 | 193 | 68 | 193 | 4.40e-25 | 99.8 |
| Msa0072560 | AT2G18550.1 | 40.476 | 126 | 71 | 1 | 55 | 176 | 56 | 181 | 1.37e-24 | 97.4 |
| Msa0072560 | AT4G36740.2 | 50.526 | 95 | 47 | 0 | 55 | 149 | 51 | 145 | 3.27e-24 | 96.3 |
| Msa0072560 | AT4G36740.1 | 50.526 | 95 | 47 | 0 | 55 | 149 | 50 | 144 | 3.48e-24 | 96.3 |
| Msa0072560 | AT1G27045.5 | 49.020 | 102 | 45 | 1 | 60 | 154 | 25 | 126 | 1.78e-22 | 90.9 |
| Msa0072560 | AT1G27045.3 | 49.020 | 102 | 45 | 1 | 60 | 154 | 25 | 126 | 1.78e-22 | 90.9 |
| Msa0072560 | AT1G27045.1 | 49.020 | 102 | 45 | 1 | 60 | 154 | 68 | 169 | 1.90e-22 | 92.0 |
| Msa0072560 | AT1G27045.2 | 49.020 | 102 | 45 | 1 | 60 | 154 | 17 | 118 | 2.00e-22 | 90.5 |
| Msa0072560 | AT5G66700.1 | 48.913 | 92 | 47 | 0 | 60 | 151 | 71 | 162 | 1.15e-21 | 90.1 |
| Msa0072560 | AT1G27045.4 | 43.636 | 110 | 58 | 1 | 60 | 169 | 68 | 173 | 8.22e-21 | 88.2 |
| Msa0072560 | AT5G53980.1 | 44.211 | 95 | 53 | 0 | 60 | 154 | 11 | 105 | 2.93e-17 | 76.6 |
| Msa0072560 | AT4G16780.1 | 43.617 | 94 | 53 | 0 | 55 | 148 | 124 | 217 | 4.53e-17 | 78.6 |
| Msa0072560 | AT5G06710.1 | 44.944 | 89 | 49 | 0 | 60 | 148 | 190 | 278 | 1.27e-16 | 77.8 |
| Msa0072560 | AT2G01430.1 | 48.315 | 89 | 46 | 0 | 60 | 148 | 139 | 227 | 2.26e-16 | 76.6 |
| Msa0072560 | AT3G60390.1 | 46.067 | 89 | 48 | 0 | 60 | 148 | 162 | 250 | 2.95e-16 | 76.6 |
| Msa0072560 | AT4G17460.1 | 41.489 | 94 | 55 | 0 | 55 | 148 | 130 | 223 | 3.01e-16 | 76.3 |
| Msa0072560 | AT2G22800.1 | 42.553 | 94 | 54 | 0 | 55 | 148 | 108 | 201 | 8.32e-16 | 75.1 |
| Msa0072560 | AT4G37790.1 | 42.553 | 94 | 54 | 0 | 55 | 148 | 121 | 214 | 1.39e-15 | 74.3 |
| Msa0072560 | AT5G47370.1 | 31.973 | 147 | 91 | 2 | 11 | 148 | 72 | 218 | 1.43e-15 | 74.3 |
| Msa0072560 | AT2G44910.1 | 42.697 | 89 | 51 | 0 | 60 | 148 | 163 | 251 | 4.08e-15 | 73.6 |
| Msa0072560 | AT1G70920.2 | 41.489 | 94 | 55 | 0 | 55 | 148 | 34 | 127 | 1.97e-12 | 63.9 |
| Msa0072560 | AT1G70920.1 | 41.489 | 94 | 55 | 0 | 55 | 148 | 64 | 157 | 2.24e-12 | 64.3 |
| Msa0072560 | AT5G06710.4 | 53.846 | 52 | 24 | 0 | 60 | 111 | 190 | 241 | 1.02e-11 | 63.5 |
| Msa0072560 | AT2G01430.2 | 56.604 | 53 | 23 | 0 | 60 | 112 | 139 | 191 | 2.12e-11 | 61.6 |
Find 47 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCTCGTCAAATTGCTATT+TGG | 0.235729 | 1_2:+45618356 | Msa0072560:CDS |
| CCAATTTGAGGTTGTGTCTA+AGG | 0.239704 | 1_2:+45618444 | Msa0072560:CDS |
| TCCACCTAGCACGTCTGTTT+TGG | 0.279067 | 1_2:-45618381 | None:intergenic |
| AAACTGTTGTTTCAATTTAG+AGG | 0.288321 | 1_2:+45620128 | Msa0072560:CDS |
| CCTTAGACACAACCTCAAAT+TGG | 0.299647 | 1_2:-45618444 | None:intergenic |
| ATGAAGCTTTCCAAGGAGTT+AGG | 0.302805 | 1_2:+45618328 | Msa0072560:CDS |
| CTTTCCCTTCACCTCTCTGT+TGG | 0.348637 | 1_2:-45620076 | None:intergenic |
| GAAAGCTTCATCTTCCTTTG+AGG | 0.362313 | 1_2:-45618316 | None:intergenic |
| AATTAAGGGTGATAGTTATA+AGG | 0.365223 | 1_2:-45620204 | None:intergenic |
| AGATACAATGTTCCCAGAAA+TGG | 0.367312 | 1_2:+45618189 | Msa0072560:CDS |
| AAAGCTTCATCTTCCTTTGA+GGG | 0.383872 | 1_2:-45618315 | None:intergenic |
| GCAGGCCAGTAGGGCAATAG+TGG | 0.385106 | 1_2:-45620174 | None:intergenic |
| GTAGTTGTAGAGGAAGCTTA+AGG | 0.434188 | 1_2:-45617766 | None:intergenic |
| GTGTTCCACTATTGCCCTAC+TGG | 0.465761 | 1_2:+45620169 | Msa0072560:CDS |
| TGAAGCTTTCCAAGGAGTTA+GGG | 0.476348 | 1_2:+45618329 | Msa0072560:CDS |
| TTCACTTAGACACCAATTTG+AGG | 0.493024 | 1_2:+45618432 | Msa0072560:CDS |
| ATACAAGTGTTCAAGTTGCT+TGG | 0.493063 | 1_2:-45618407 | None:intergenic |
| GGTACAGAAGCAGGCCAGTA+GGG | 0.495028 | 1_2:-45620183 | None:intergenic |
| AGGCTGTAGCCCTAACTCCT+TGG | 0.496406 | 1_2:-45618338 | None:intergenic |
| TGTTCAGGTTGTGAAGTTGA+AGG | 0.499837 | 1_2:+45619939 | Msa0072560:intron |
| AAGTGAACAGATGGAATCAC+TGG | 0.512806 | 1_2:+45618261 | Msa0072560:CDS |
| GTGTGTTTGTTAAGGAATGA+TGG | 0.514828 | 1_2:+45618144 | Msa0072560:intron |
| TACAACCAATGCTCATATCA+AGG | 0.516637 | 1_2:+45617786 | Msa0072560:CDS |
| TAGTTATAAGGTACAGAAGC+AGG | 0.517499 | 1_2:-45620192 | None:intergenic |
| CAACAGTTGAACATTGATGA+AGG | 0.518077 | 1_2:+45620105 | Msa0072560:CDS |
| AAAACAGCAGCTTCAGGATG+AGG | 0.518698 | 1_2:+45618468 | Msa0072560:CDS |
| AGCATTGGTTGTAGTTGTAG+AGG | 0.525273 | 1_2:-45617776 | None:intergenic |
| TAGATAATTATGGAATGGAA+TGG | 0.526946 | 1_2:+45617708 | None:intergenic |
| AACTCTTGTGGTAGAATGCA+AGG | 0.527714 | 1_2:+45619982 | Msa0072560:CDS |
| GCGATTAACAAGTGAACAGA+TGG | 0.532633 | 1_2:+45618252 | Msa0072560:CDS |
| AGGTACAGAAGCAGGCCAGT+AGG | 0.540474 | 1_2:-45620184 | None:intergenic |
| ACAGATAGATAATTATGGAA+TGG | 0.549629 | 1_2:+45617703 | None:intergenic |
| TGGAAGTGAAACAACAAGAC+TGG | 0.554952 | 1_2:+45618164 | Msa0072560:CDS |
| CTTAAGGAAGACTCTGGTTG+AGG | 0.556116 | 1_2:-45617750 | None:intergenic |
| TTGCTCCAACAGAGAGGTGA+AGG | 0.556685 | 1_2:+45620071 | Msa0072560:CDS |
| AGATCAAACTAGACCCTCAA+AGG | 0.558248 | 1_2:+45618302 | Msa0072560:CDS |
| GGTTCCAAAACAGACGTGCT+AGG | 0.562576 | 1_2:+45618377 | Msa0072560:CDS |
| AACAGTAGAAAGCACATCAG+AGG | 0.578567 | 1_2:+45620038 | Msa0072560:CDS |
| AAAGAACAAGGTAACTCTTG+TGG | 0.599344 | 1_2:+45619970 | Msa0072560:CDS |
| AGGAAGCTTAAGGAAGACTC+TGG | 0.609695 | 1_2:-45617756 | None:intergenic |
| AAGGAAGATGAAGCTTTCCA+AGG | 0.615641 | 1_2:+45618321 | Msa0072560:CDS |
| AAGGCTATGTTGAAAGAACA+AGG | 0.632753 | 1_2:+45619958 | Msa0072560:CDS |
| TTACTATACAGAAATGTCAG+TGG | 0.650416 | 1_2:+45620005 | Msa0072560:CDS |
| TGCTCCAACAGAGAGGTGAA+GGG | 0.655501 | 1_2:+45620072 | Msa0072560:CDS |
| TCCAAAACAGACGTGCTAGG+TGG | 0.669622 | 1_2:+45618380 | Msa0072560:CDS |
| AACCAAATAGCAATTTGACG+AGG | 0.698239 | 1_2:-45618358 | None:intergenic |
| TCTACGTTGCTCCAACAGAG+AGG | 0.709736 | 1_2:+45620065 | Msa0072560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATATTGTTTTAAAGTTT+AGG | - | chr1_2:45618124-45618143 | None:intergenic | 10.0% |
| !!! | TGTTATTTTAAATAATCAAA+TGG | + | chr1_2:45618704-45618723 | Msa0072560:intron | 10.0% |
| !! | TATTTAGTGTTATATTATAT+TGG | + | chr1_2:45618925-45618944 | Msa0072560:intron | 10.0% |
| !! | ATTTAGTGTTATATTATATT+GGG | + | chr1_2:45618926-45618945 | Msa0072560:intron | 10.0% |
| !! | AGAGAAAAATAAATTATTTA+AGG | + | chr1_2:45619067-45619086 | Msa0072560:intron | 10.0% |
| !! | TACGTAAAAAAAATTTAAAA+TGG | + | chr1_2:45619151-45619170 | Msa0072560:intron | 10.0% |
| !!! | TTTTCTCTTATTTATATTAT+TGG | + | chr1_2:45619605-45619624 | Msa0072560:intron | 10.0% |
| !! | AAAAAAAAACTATAGATACA+TGG | - | chr1_2:45617955-45617974 | None:intergenic | 15.0% |
| !! | TAAATAGAGAAATACTTAAA+TGG | - | chr1_2:45618774-45618793 | None:intergenic | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | + | chr1_2:45618860-45618879 | Msa0072560:intron | 15.0% |
| !!! | ATAATTTATTTTTCTCTTCT+TGG | - | chr1_2:45619064-45619083 | None:intergenic | 15.0% |
| !!! | GAAGTATATGTTTTTATTTT+CGG | + | chr1_2:45619258-45619277 | Msa0072560:intron | 15.0% |
| !! | TATTAAATATTAAAGTAGCA+TGG | - | chr1_2:45619806-45619825 | None:intergenic | 15.0% |
| !! | AAAGTAAAATAGAGTTTAAT+TGG | + | chr1_2:45619835-45619854 | Msa0072560:intron | 15.0% |
| !!! | ATTTATATATGTAATTTGCA+TGG | - | chr1_2:45619908-45619927 | None:intergenic | 15.0% |
| !!! | ATTACATTCTAGAAGTTATT+AGG | - | chr1_2:45617877-45617896 | None:intergenic | 20.0% |
| !! | TAACCCTATATTTAAACTTA+TGG | + | chr1_2:45617901-45617920 | Msa0072560:intron | 20.0% |
| !! | TGTCCATAAGTTTAAATATA+GGG | - | chr1_2:45617907-45617926 | None:intergenic | 20.0% |
| !! | TTGTCCATAAGTTTAAATAT+AGG | - | chr1_2:45617908-45617927 | None:intergenic | 20.0% |
| !! | ATTCAAAATTTACGAATGTT+TGG | + | chr1_2:45618011-45618030 | Msa0072560:intron | 20.0% |
| !! | TCATTCTCGTATATTATTAT+CGG | + | chr1_2:45618087-45618106 | Msa0072560:intron | 20.0% |
| !!! | AATATTTTGTGTGTTTGTTA+AGG | + | chr1_2:45618136-45618155 | Msa0072560:intron | 20.0% |
| !!! | AAGCGCAAATAATTTTATTT+TGG | + | chr1_2:45618632-45618651 | Msa0072560:intron | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr1_2:45618885-45618904 | Msa0072560:intron | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | + | chr1_2:45618958-45618977 | Msa0072560:intron | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | + | chr1_2:45618959-45618978 | Msa0072560:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | + | chr1_2:45618995-45619014 | Msa0072560:intron | 20.0% |
| !! | ATCGAAAACGTATAAATATA+TGG | + | chr1_2:45619111-45619130 | Msa0072560:intron | 20.0% |
| !!! | TAAATATATGGTGTTGATAT+TGG | + | chr1_2:45619123-45619142 | Msa0072560:intron | 20.0% |
| !!! | AAATATATGGTGTTGATATT+GGG | + | chr1_2:45619124-45619143 | Msa0072560:intron | 20.0% |
| !!! | TTATTTTGTCATAATCCTTA+CGG | + | chr1_2:45619185-45619204 | Msa0072560:intron | 20.0% |
| !! | TATATCAATGACTTATATTG+AGG | - | chr1_2:45619345-45619364 | None:intergenic | 20.0% |
| !!! | ATTACAATGTGTTATTTTAG+TGG | + | chr1_2:45619409-45619428 | Msa0072560:intron | 20.0% |
| !!! | TAGTTTTTTTTTGCTGTATC+TGG | + | chr1_2:45617963-45617982 | Msa0072560:intron | 25.0% |
| !!! | TCATCATTTTTTCCATTTCT+GGG | - | chr1_2:45618204-45618223 | None:intergenic | 25.0% |
| !!! | TTCATCATTTTTTCCATTTC+TGG | - | chr1_2:45618205-45618224 | None:intergenic | 25.0% |
| ! | ATGGAAAAAATGATGAAGTA+TGG | + | chr1_2:45618208-45618227 | Msa0072560:CDS | 25.0% |
| ! | TGGAAAAAATGATGAAGTAT+GGG | + | chr1_2:45618209-45618228 | Msa0072560:CDS | 25.0% |
| ! | CAAAGTAGGTCAATTAAATT+GGG | - | chr1_2:45618825-45618844 | None:intergenic | 25.0% |
| ! | TGTATAAATAAAGGAGAAAG+TGG | + | chr1_2:45618869-45618888 | Msa0072560:intron | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr1_2:45618884-45618903 | Msa0072560:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | + | chr1_2:45618994-45619013 | Msa0072560:intron | 25.0% |
| ! | AATGAAGGCAAAATATAGTT+TGG | + | chr1_2:45619288-45619307 | Msa0072560:intron | 25.0% |
| ! | ATAAATTTATTCTAACGGTC+TGG | + | chr1_2:45619367-45619386 | Msa0072560:intron | 25.0% |
| !!! | TTATTTTAGTGGTGTAAGTT+GGG | + | chr1_2:45619420-45619439 | Msa0072560:intron | 25.0% |
| ! | TTTATGAGTTTATGGATTCA+CGG | - | chr1_2:45619576-45619595 | None:intergenic | 25.0% |
| ! | TGATCAACTTTATGAGTTTA+TGG | - | chr1_2:45619584-45619603 | None:intergenic | 25.0% |
| ! | ACACATACATACATACATAT+TGG | - | chr1_2:45619696-45619715 | None:intergenic | 25.0% |
| !!! | AAACTGTTGTTTCAATTTAG+AGG | + | chr1_2:45620128-45620147 | Msa0072560:CDS | 25.0% |
| ! | TTTTACCTTGATATGAGCAT+TGG | - | chr1_2:45617794-45617813 | None:intergenic | 30.0% |
| TATCTGGCATATATATAGCT+TGG | + | chr1_2:45617979-45617998 | Msa0072560:intron | 30.0% | |
| GTCAATGAACAATACCTAAA+TGG | + | chr1_2:45618579-45618598 | Msa0072560:intron | 30.0% | |
| GAACAATACCTAAATGGTTA+CGG | + | chr1_2:45618585-45618604 | Msa0072560:intron | 30.0% | |
| AGTATTTGTGTGTGTCTAAA+TGG | + | chr1_2:45618729-45618748 | Msa0072560:intron | 30.0% | |
| ! | GTCTAAATGGATTTCATTTG+TGG | + | chr1_2:45618742-45618761 | Msa0072560:intron | 30.0% |
| CCAAAGTAGGTCAATTAAAT+TGG | - | chr1_2:45618826-45618845 | None:intergenic | 30.0% | |
| CCAATTTAATTGACCTACTT+TGG | + | chr1_2:45618823-45618842 | Msa0072560:intron | 30.0% | |
| ! | TTGAAATGGGTCAGTTATTT+TGG | + | chr1_2:45618972-45618991 | Msa0072560:intron | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | + | chr1_2:45618973-45618992 | Msa0072560:intron | 30.0% |
| TTTACCTCCTCATTGAAATT+TGG | - | chr1_2:45619215-45619234 | None:intergenic | 30.0% | |
| ! | ATTTTCGGTGAACTTAATGA+AGG | + | chr1_2:45619273-45619292 | Msa0072560:intron | 30.0% |
| ATCAATGACTTATATTGAGG+TGG | - | chr1_2:45619342-45619361 | None:intergenic | 30.0% | |
| !!! | GTTATTTTAGTGGTGTAAGT+TGG | + | chr1_2:45619419-45619438 | Msa0072560:intron | 30.0% |
| !!! | TATTTTAGTGGTGTAAGTTG+GGG | + | chr1_2:45619421-45619440 | Msa0072560:intron | 30.0% |
| TGTCACCATGATTTCATTAA+GGG | - | chr1_2:45619478-45619497 | None:intergenic | 30.0% | |
| TTACTATACAGAAATGTCAG+TGG | + | chr1_2:45620005-45620024 | Msa0072560:CDS | 30.0% | |
| TACAACCAATGCTCATATCA+AGG | + | chr1_2:45617786-45617805 | Msa0072560:CDS | 35.0% | |
| ! | GTGTGTTTGTTAAGGAATGA+TGG | + | chr1_2:45618144-45618163 | Msa0072560:intron | 35.0% |
| AGATACAATGTTCCCAGAAA+TGG | + | chr1_2:45618189-45618208 | Msa0072560:CDS | 35.0% | |
| AAAGCTTCATCTTCCTTTGA+GGG | - | chr1_2:45618318-45618337 | None:intergenic | 35.0% | |
| AACCAAATAGCAATTTGACG+AGG | - | chr1_2:45618361-45618380 | None:intergenic | 35.0% | |
| !! | ATACAAGTGTTCAAGTTGCT+TGG | - | chr1_2:45618410-45618429 | None:intergenic | 35.0% |
| TTCACTTAGACACCAATTTG+AGG | + | chr1_2:45618432-45618451 | Msa0072560:CDS | 35.0% | |
| !!! | TATTTTGGCGCATACACAAA+TGG | + | chr1_2:45618647-45618666 | Msa0072560:intron | 35.0% |
| GTAGGTCAATTAAATTGGGA+CGG | - | chr1_2:45618821-45618840 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | - | chr1_2:45618839-45618858 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | + | chr1_2:45619008-45619027 | Msa0072560:intron | 35.0% | |
| TTGAAATTTGGACTACCGTA+AGG | - | chr1_2:45619203-45619222 | None:intergenic | 35.0% | |
| TAGTCCAAATTTCAATGAGG+AGG | + | chr1_2:45619208-45619227 | Msa0072560:intron | 35.0% | |
| TATATTGAGGTGGTGTAAGT+TGG | - | chr1_2:45619332-45619351 | None:intergenic | 35.0% | |
| TGACACCCTTAATGAAATCA+TGG | + | chr1_2:45619470-45619489 | Msa0072560:intron | 35.0% | |
| GTGTCACCATGATTTCATTA+AGG | - | chr1_2:45619479-45619498 | None:intergenic | 35.0% | |
| !! | AAATTTGTTGTTCCCTGTTC+AGG | + | chr1_2:45619924-45619943 | Msa0072560:intron | 35.0% |
| AAGGCTATGTTGAAAGAACA+AGG | + | chr1_2:45619958-45619977 | Msa0072560:CDS | 35.0% | |
| AAAGAACAAGGTAACTCTTG+TGG | + | chr1_2:45619970-45619989 | Msa0072560:CDS | 35.0% | |
| CAACAGTTGAACATTGATGA+AGG | + | chr1_2:45620105-45620124 | Msa0072560:CDS | 35.0% | |
| TAGTTATAAGGTACAGAAGC+AGG | - | chr1_2:45620195-45620214 | None:intergenic | 35.0% | |
| GTAGTTGTAGAGGAAGCTTA+AGG | - | chr1_2:45617769-45617788 | None:intergenic | 40.0% | |
| !! | AGCATTGGTTGTAGTTGTAG+AGG | - | chr1_2:45617779-45617798 | None:intergenic | 40.0% |
| ! | TACATGTGTCGATATCACGT+TGG | - | chr1_2:45618050-45618069 | None:intergenic | 40.0% |
| TGGAAGTGAAACAACAAGAC+TGG | + | chr1_2:45618164-45618183 | Msa0072560:CDS | 40.0% | |
| GCGATTAACAAGTGAACAGA+TGG | + | chr1_2:45618252-45618271 | Msa0072560:CDS | 40.0% | |
| AAGTGAACAGATGGAATCAC+TGG | + | chr1_2:45618261-45618280 | Msa0072560:CDS | 40.0% | |
| !! | ACTGGAGAGTAGTTTTCAAG+AGG | + | chr1_2:45618279-45618298 | Msa0072560:CDS | 40.0% |
| AGATCAAACTAGACCCTCAA+AGG | + | chr1_2:45618302-45618321 | Msa0072560:CDS | 40.0% | |
| GAAAGCTTCATCTTCCTTTG+AGG | - | chr1_2:45618319-45618338 | None:intergenic | 40.0% | |
| AAGGAAGATGAAGCTTTCCA+AGG | + | chr1_2:45618321-45618340 | Msa0072560:CDS | 40.0% | |
| ATGAAGCTTTCCAAGGAGTT+AGG | + | chr1_2:45618328-45618347 | Msa0072560:CDS | 40.0% | |
| TGAAGCTTTCCAAGGAGTTA+GGG | + | chr1_2:45618329-45618348 | Msa0072560:CDS | 40.0% | |
| ! | AGCCTCGTCAAATTGCTATT+TGG | + | chr1_2:45618356-45618375 | Msa0072560:CDS | 40.0% |
| CCTTAGACACAACCTCAAAT+TGG | - | chr1_2:45618447-45618466 | None:intergenic | 40.0% | |
| ! | CCAATTTGAGGTTGTGTCTA+AGG | + | chr1_2:45618444-45618463 | Msa0072560:CDS | 40.0% |
| TAAGGAAAAACAGCAGCTTC+AGG | + | chr1_2:45618462-45618481 | Msa0072560:CDS | 40.0% | |
| TAACACAGCCGTAACCATTT+AGG | - | chr1_2:45618596-45618615 | None:intergenic | 40.0% | |
| !! | ACGGCTGTGTTATTTAGATG+AGG | + | chr1_2:45618604-45618623 | Msa0072560:intron | 40.0% |
| !! | CGGCTGTGTTATTTAGATGA+GGG | + | chr1_2:45618605-45618624 | Msa0072560:intron | 40.0% |
| CGGTAGTCCAAATTTCAATG+AGG | + | chr1_2:45619205-45619224 | Msa0072560:intron | 40.0% | |
| ! | GTAAGTTGGGGCATTCTATT+TGG | + | chr1_2:45619433-45619452 | Msa0072560:intron | 40.0% |
| CGAACGCGTAACTAAAATCA+TGG | + | chr1_2:45619517-45619536 | Msa0072560:intron | 40.0% | |
| ! | CCATGTCTCTTTTGTAGACA+CGG | + | chr1_2:45619666-45619685 | Msa0072560:intron | 40.0% |
| GAAACAAAGTTGCAGTGCTA+TGG | - | chr1_2:45619732-45619751 | None:intergenic | 40.0% | |
| TCAACTTCACAACCTGAACA+GGG | - | chr1_2:45619939-45619958 | None:intergenic | 40.0% | |
| TTCAACTTCACAACCTGAAC+AGG | - | chr1_2:45619940-45619959 | None:intergenic | 40.0% | |
| !! | TGTTCAGGTTGTGAAGTTGA+AGG | + | chr1_2:45619939-45619958 | Msa0072560:intron | 40.0% |
| AACTCTTGTGGTAGAATGCA+AGG | + | chr1_2:45619982-45620001 | Msa0072560:CDS | 40.0% | |
| ! | AACAGTAGAAAGCACATCAG+AGG | + | chr1_2:45620038-45620057 | Msa0072560:CDS | 40.0% |
| CTTAAGGAAGACTCTGGTTG+AGG | - | chr1_2:45617753-45617772 | None:intergenic | 45.0% | |
| AGGAAGCTTAAGGAAGACTC+TGG | - | chr1_2:45617759-45617778 | None:intergenic | 45.0% | |
| AAAACAGCAGCTTCAGGATG+AGG | + | chr1_2:45618468-45618487 | Msa0072560:CDS | 45.0% | |
| GGTCAATTAAATTGGGACGG+AGG | - | chr1_2:45618818-45618837 | None:intergenic | 45.0% | |
| ATGGGTCAGTTATTCCGGAA+CGG | + | chr1_2:45619013-45619032 | Msa0072560:intron | 45.0% | |
| ! | AGTTGGGGCATTCTATTTGG+TGG | + | chr1_2:45619436-45619455 | Msa0072560:intron | 45.0% |
| CCGTGTCTACAAAAGAGACA+TGG | - | chr1_2:45619669-45619688 | None:intergenic | 45.0% | |
| !! | ATATTATAAATTTATTCTAA+CGG | + | chr1_2:45619362-45619381 | Msa0072560:intron | 5.0% |
| GTCGATATCACGTTGGACAC+TGG | - | chr1_2:45618043-45618062 | None:intergenic | 50.0% | |
| GGTTCCAAAACAGACGTGCT+AGG | + | chr1_2:45618377-45618396 | Msa0072560:CDS | 50.0% | |
| TCCAAAACAGACGTGCTAGG+TGG | + | chr1_2:45618380-45618399 | Msa0072560:CDS | 50.0% | |
| ! | TCCACCTAGCACGTCTGTTT+TGG | - | chr1_2:45618384-45618403 | None:intergenic | 50.0% |
| GTCAGTTATTCCGGAACGGA+GGG | + | chr1_2:45619017-45619036 | Msa0072560:intron | 50.0% | |
| !! | AGGGAGTACCATGTAGACGT+CGG | + | chr1_2:45619036-45619055 | Msa0072560:intron | 50.0% |
| TCTTGGATCCGACGTCTACA+TGG | - | chr1_2:45619047-45619066 | None:intergenic | 50.0% | |
| TCTACGTTGCTCCAACAGAG+AGG | + | chr1_2:45620065-45620084 | Msa0072560:CDS | 50.0% | |
| TTGCTCCAACAGAGAGGTGA+AGG | + | chr1_2:45620071-45620090 | Msa0072560:CDS | 50.0% | |
| TGCTCCAACAGAGAGGTGAA+GGG | + | chr1_2:45620072-45620091 | Msa0072560:CDS | 50.0% | |
| CTTTCCCTTCACCTCTCTGT+TGG | - | chr1_2:45620079-45620098 | None:intergenic | 50.0% | |
| GTGTTCCACTATTGCCCTAC+TGG | + | chr1_2:45620169-45620188 | Msa0072560:CDS | 50.0% | |
| AGGCTGTAGCCCTAACTCCT+TGG | - | chr1_2:45618341-45618360 | None:intergenic | 55.0% | |
| GGTCAGTTATTCCGGAACGG+AGG | + | chr1_2:45619016-45619035 | Msa0072560:intron | 55.0% | |
| ACATGGTACTCCCTCCGTTC+CGG | - | chr1_2:45619030-45619049 | None:intergenic | 55.0% | |
| GGTACAGAAGCAGGCCAGTA+GGG | - | chr1_2:45620186-45620205 | None:intergenic | 55.0% | |
| AGGTACAGAAGCAGGCCAGT+AGG | - | chr1_2:45620187-45620206 | None:intergenic | 55.0% | |
| GCAGGCCAGTAGGGCAATAG+TGG | - | chr1_2:45620177-45620196 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 45617717 | 45620224 | 45617717 | ID=Msa0072560;Name=Msa0072560 |
| chr1_2 | mRNA | 45617717 | 45620224 | 45617717 | ID=Msa0072560-mRNA-1;Parent=Msa0072560;Name=Msa0072560-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|233 |
| chr1_2 | exon | 45617717 | 45617807 | 45617717 | ID=Msa0072560-mRNA-1:exon:13758;Parent=Msa0072560-mRNA-1 |
| chr1_2 | exon | 45618158 | 45618489 | 45618158 | ID=Msa0072560-mRNA-1:exon:13759;Parent=Msa0072560-mRNA-1 |
| chr1_2 | exon | 45619946 | 45620224 | 45619946 | ID=Msa0072560-mRNA-1:exon:13760;Parent=Msa0072560-mRNA-1 |
| chr1_2 | CDS | 45617717 | 45617807 | 45617717 | ID=Msa0072560-mRNA-1:cds;Parent=Msa0072560-mRNA-1 |
| chr1_2 | CDS | 45618158 | 45618489 | 45618158 | ID=Msa0072560-mRNA-1:cds;Parent=Msa0072560-mRNA-1 |
| chr1_2 | CDS | 45619946 | 45620224 | 45619946 | ID=Msa0072560-mRNA-1:cds;Parent=Msa0072560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
