AlfalfaGEDB | Msa0072560

M. sativa cultivar zhongmu-4 / Msa0072560

KEGG: K09338
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009965 GO:0010016 GO:0010022 GO:0010073 GO:0010432 GO:0010433 GO:0010434 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040034 GO:0043565 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0072560	XP_003590399.1	97.425	233	5	1	1	233	1	232	9.48e-168	471

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0072560	sp\|Q9LZR0\|ATB51_ARATH	50.769	195	78	6	1	178	1	194	4.26e-48	161

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0072560	G7I9C4	97.425	233	5	1	1	233	1	232	4.53e-168	471

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TFs/TRs:

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Gene ID	Type	Classification
Msa0072560	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0072560	Msa0751890	0.817824	2.698972e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0072560	MtrunA17_Chr7g0265521	56.735	245	81	11	1	233	1	232	8.48e-78	234
Msa0072560	MtrunA17_Chr1g0179581	98.198	111	1	1	32	142	1	110	5.51e-73	217
Msa0072560	MtrunA17_Chr1g0179591	68.939	132	36	1	102	233	3	129	4.48e-63	192
Msa0072560	MtrunA17_Chr6g0450991	56.863	102	37	1	59	153	66	167	3.20e-30	113
Msa0072560	MtrunA17_Chr4g0060031	50.420	119	52	1	49	160	84	202	1.47e-29	112
Msa0072560	MtrunA17_Chr6g0453021	55.670	97	43	0	54	150	90	186	3.16e-28	108
Msa0072560	MtrunA17_Chr8g0362151	55.670	97	36	1	57	146	74	170	6.96e-28	107
Msa0072560	MtrunA17_Chr3g0123691	38.764	178	87	5	55	221	55	221	7.40e-28	107
Msa0072560	MtrunA17_Chr8g0381741	40.645	155	79	4	48	189	39	193	1.73e-26	104
Msa0072560	MtrunA17_Chr5g0415941	54.128	109	39	2	58	155	85	193	2.32e-26	103

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0072560	AT5G03790.1	50.769	195	78	6	1	178	1	194	4.33e-49	161
Msa0072560	AT5G03790.2	53.704	162	58	5	1	145	1	162	1.23e-42	143
Msa0072560	AT2G36610.1	49.162	179	65	7	7	162	5	180	1.95e-41	140
Msa0072560	AT4G40060.1	41.875	160	82	3	27	177	28	185	1.14e-31	117
Msa0072560	AT1G69780.1	44.755	143	66	1	57	199	82	211	1.31e-30	115
Msa0072560	AT5G15150.1	62.366	93	35	0	57	149	112	204	1.05e-29	113
Msa0072560	AT2G22430.1	54.455	101	39	1	56	149	58	158	1.01e-28	110
Msa0072560	AT5G65310.1	41.667	144	72	4	12	151	28	163	7.56e-28	108
Msa0072560	AT5G65310.2	41.667	144	72	4	12	151	10	145	8.11e-28	107
Msa0072560	AT3G01470.1	36.471	170	98	2	57	219	65	231	1.88e-27	106

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Find 47 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGCAGCTTCAGGATG+AGG	0.518698	1_2:+45618468	Msa0072560:CDS
AAACTGTTGTTTCAATTTAG+AGG	0.288321	1_2:+45620128	Msa0072560:CDS
AAAGAACAAGGTAACTCTTG+TGG	0.599344	1_2:+45619970	Msa0072560:CDS
AAAGCTTCATCTTCCTTTGA+GGG	0.383872	1_2:-45618315	None:intergenic
AACAGTAGAAAGCACATCAG+AGG	0.578567	1_2:+45620038	Msa0072560:CDS
AACCAAATAGCAATTTGACG+AGG	0.698239	1_2:-45618358	None:intergenic
AACTCTTGTGGTAGAATGCA+AGG	0.527714	1_2:+45619982	Msa0072560:CDS
AAGGAAGATGAAGCTTTCCA+AGG	0.615641	1_2:+45618321	Msa0072560:CDS
AAGGCTATGTTGAAAGAACA+AGG	0.632753	1_2:+45619958	Msa0072560:CDS
AAGTGAACAGATGGAATCAC+TGG	0.512806	1_2:+45618261	Msa0072560:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATCTGGCATATATATAGCT+TGG	+	chr1_2:45617979-45617998	Msa0072560:intron	30.0%
GTCAATGAACAATACCTAAA+TGG	+	chr1_2:45618579-45618598	Msa0072560:intron	30.0%
GAACAATACCTAAATGGTTA+CGG	+	chr1_2:45618585-45618604	Msa0072560:intron	30.0%
AGTATTTGTGTGTGTCTAAA+TGG	+	chr1_2:45618729-45618748	Msa0072560:intron	30.0%
CCAAAGTAGGTCAATTAAAT+TGG	-	chr1_2:45618826-45618845	None:intergenic	30.0%
CCAATTTAATTGACCTACTT+TGG	+	chr1_2:45618823-45618842	Msa0072560:intron	30.0%
TTTACCTCCTCATTGAAATT+TGG	-	chr1_2:45619215-45619234	None:intergenic	30.0%
ATCAATGACTTATATTGAGG+TGG	-	chr1_2:45619342-45619361	None:intergenic	30.0%
TGTCACCATGATTTCATTAA+GGG	-	chr1_2:45619478-45619497	None:intergenic	30.0%
TTACTATACAGAAATGTCAG+TGG	+	chr1_2:45620005-45620024	Msa0072560:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	45617717	45620224	45617717	ID=Msa0072560;Name=Msa0072560
chr1_2	mRNA	45617717	45620224	45617717	ID=Msa0072560-mRNA-1;Parent=Msa0072560;Name=Msa0072560-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|0\|0\|1\|1\|1\|3\|0\|233
chr1_2	exon	45617717	45617807	45617717	ID=Msa0072560-mRNA-1:exon:13758;Parent=Msa0072560-mRNA-1
chr1_2	exon	45618158	45618489	45618158	ID=Msa0072560-mRNA-1:exon:13759;Parent=Msa0072560-mRNA-1
chr1_2	exon	45619946	45620224	45619946	ID=Msa0072560-mRNA-1:exon:13760;Parent=Msa0072560-mRNA-1
chr1_2	CDS	45617717	45617807	45617717	ID=Msa0072560-mRNA-1:cds;Parent=Msa0072560-mRNA-1
chr1_2	CDS	45618158	45618489	45618158	ID=Msa0072560-mRNA-1:cds;Parent=Msa0072560-mRNA-1
chr1_2	CDS	45619946	45620224	45619946	ID=Msa0072560-mRNA-1:cds;Parent=Msa0072560-mRNA-1

Gene Sequence

>Msa0072560

ATGGAATGGAATGGAAACACAAGAAGCTTTGTTCCTCAACCAGAGTCTTCCTTAAGCTTCCTCTACAACTACAACCAATGCTCATATCAAGGAATGATGGAAGTGAAACAACAAGACTGGACAGATACAATGTTCCCAGAAATGGAAAAAATGATGAAGTATGGGAACTTGCAAGAAAAGAAAAAGCGATTAACAAGTGAACAGATGGAATCACTGGAGAGTAGTTTTCAAGAGGAGATCAAACTAGACCCTCAAAGGAAGATGAAGCTTTCCAAGGAGTTAGGGCTACAGCCTCGTCAAATTGCTATTTGGTTCCAAAACAGACGTGCTAGGTGGAAGACCAAGCAACTTGAACACTTGTATGATTCACTTAGACACCAATTTGAGGTTGTGTCTAAGGAAAAACAGCAGCTTCAGGATGAGGTTGTGAAGTTGAAGGCTATGTTGAAAGAACAAGGTAACTCTTGTGGTAGAATGCAAGGTTACTATACAGAAATGTCAGTGGAAGAAACAGAAACAGTAGAAAGCACATCAGAGGCAGCTCTACGTTGCTCCAACAGAGAGGTGAAGGGAAAGATTCATCAACAGTTGAACATTGATGAAGGAAACTGTTGTTTCAATTTAGAGGACTATAACATTAATAACAGTGTTCCACTATTGCCCTACTGGCCTGCTTCTGTACCTTATAACTATCACCCTTAA

Protein sequence

>Msa0072560

MEWNGNTRSFVPQPESSLSFLYNYNQCSYQGMMEVKQQDWTDTMFPEMEKMMKYGNLQEKKKRLTSEQMESLESSFQEEIKLDPQRKMKLSKELGLQPRQIAIWFQNRRARWKTKQLEHLYDSLRHQFEVVSKEKQQLQDEVVKLKAMLKEQGNSCGRMQGYYTEMSVEETETVESTSEAALRCSNREVKGKIHQQLNIDEGNCCFNLEDYNINNSVPLLPYWPASVPYNYHP*