AlfalfaGEDB | Msa0072750

M. sativa cultivar zhongmu-4 / Msa0072750

KEGG: K18655
GO: GO:0001101 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005730 GO:0005737 GO:0005886 GO:0006139 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008026 GO:0008104 GO:0008150 GO:0008152 GO:0008186 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0010501 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0016973 GO:0017111 GO:0031503 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033993 GO:0034613 GO:0034641 GO:0042221 GO:0042623 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070035 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0090304 GO:0097305 GO:0140098 GO:1901360 GO:1901700
PFAM: PF00270.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0072750	XP_003590425.1	96.646	477	16	0	14	490	15	491	0.0	954

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0072750	sp\|Q93ZG7\|RH38_ARATH	63.299	485	157	7	7	489	29	494	0.0	604

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0072750	G7IA59	96.646	477	16	0	14	490	15	491	0.0	954

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0072750	Msa0557320	0.809749	1.622708e-50	-8.615850e-47
Msa0072750	Msa0571130	0.813815	2.114773e-51	-8.615850e-47
Msa0072750	Msa1041670	0.800745	1.247559e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0072750	MtrunA17_Chr1g0179761	96.646	477	16	0	14	490	15	491	0.0	954
Msa0072750	MtrunA17_Chr4g0025141	80.349	229	41	1	262	490	15	239	7.35e-130	376
Msa0072750	MtrunA17_Chr4g0025101	62.948	251	53	2	240	490	5	215	1.39e-101	303
Msa0072750	MtrunA17_Chr4g0025131	71.818	220	54	4	22	240	3	215	5.10e-100	302
Msa0072750	MtrunA17_Chr2g0299681	37.028	397	214	13	79	471	41	405	9.53e-69	225
Msa0072750	MtrunA17_Chr4g0070981	35.872	407	227	12	70	471	28	405	2.44e-67	222
Msa0072750	MtrunA17_Chr2g0297261	34.606	393	229	9	79	471	34	398	3.35e-66	219
Msa0072750	MtrunA17_Chr8g0342861	35.533	394	224	11	79	471	41	405	4.43e-66	218
Msa0072750	MtrunA17_Chr2g0329931	36.456	395	219	12	79	471	41	405	4.77e-66	218
Msa0072750	MtrunA17_Chr7g0247191	34.163	442	243	15	44	471	105	512	3.75e-62	211

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0072750	AT3G53110.1	63.299	485	157	7	7	489	29	494	0.0	604
Msa0072750	AT1G72730.1	35.561	419	233	13	61	471	17	406	1.27e-69	228
Msa0072750	AT3G19760.1	34.383	413	238	11	60	471	20	400	3.66e-66	219
Msa0072750	AT3G13920.3	35.533	394	224	11	79	471	30	394	4.26e-65	216
Msa0072750	AT3G13920.1	35.533	394	224	11	79	471	40	404	4.48e-65	216
Msa0072750	AT1G54270.1	35.279	394	225	11	79	471	40	404	1.99e-63	212
Msa0072750	AT3G13920.4	35.279	394	220	11	79	471	40	399	2.25e-63	211
Msa0072750	AT4G00660.1	34.676	447	244	15	39	471	82	494	1.35e-62	212
Msa0072750	AT4G00660.2	34.676	447	244	15	39	471	82	494	1.35e-62	212
Msa0072750	AT3G13920.5	35.958	381	214	11	79	458	44	395	3.31e-62	209

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Find 156 sgRNAs with CRISPR-Local

Find 548 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATTATATATTTGAAAT+AGG	0.235592	1_2:+45804021	Msa0072750:CDS
AAAGCACTTTCAAATCTTAA+AGG	0.220948	1_2:-45799029	None:intergenic
AAAGCCACGGGCAAGAACAT+CGG	0.646797	1_2:-45804223	None:intergenic
AAAGTTGCTCTTAAAGAAGC+TGG	0.440458	1_2:+45805729	Msa0072750:CDS
AACACCTAAAATGAGACAAA+GGG	0.549687	1_2:-45806118	None:intergenic
AACGTCGTGGCGGATGTGTA+AGG	0.453744	1_2:-45799501	None:intergenic
AAGCACTTTCAAATCTTAAA+GGG	0.354637	1_2:-45799028	None:intergenic
AAGGATCTTGCTAGCGGTGT+TGG	0.466036	1_2:+45805779	Msa0072750:three_prime_UTR
AAGGGCGCCTATTATGGCGC+AGG	0.587444	1_2:+45800718	Msa0072750:CDS
AAGTTGAAGGATCTTGCTAG+CGG	0.711654	1_2:+45805773	Msa0072750:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CACTTAGGGTTTATGAATTT+CGG	+	chr1_2:45799455-45799474	Msa0072750:intron	30.0%
AATAAGATGAAAACCACATG+TGG	+	chr1_2:45800420-45800439	Msa0072750:intron	30.0%
ATCAAATTCTTAATTGTGCC+AGG	-	chr1_2:45800758-45800777	None:intergenic	30.0%
AGAATTAGTTATACCCTGAT+CGG	+	chr1_2:45800923-45800942	Msa0072750:intron	30.0%
TAAACTTACTCAGTACCATT+TGG	+	chr1_2:45801173-45801192	Msa0072750:intron	30.0%
GTAAATATACAGGACATACT+AGG	+	chr1_2:45801536-45801555	Msa0072750:intron	30.0%
GCAAGAATTTCTTGTATGAA+AGG	-	chr1_2:45801819-45801838	None:intergenic	30.0%
TGCATAGATTTAATCTGAAC+AGG	+	chr1_2:45801836-45801855	Msa0072750:intron	30.0%
TAAAGAGTTGGACAGAAATA+TGG	-	chr1_2:45801999-45802018	None:intergenic	30.0%
CACGTCGTCATTTAAAAATT+AGG	-	chr1_2:45802036-45802055	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	45799011	45806316	45799011	ID=Msa0072750;Name=Msa0072750
chr1_2	mRNA	45799011	45806316	45799011	ID=Msa0072750-mRNA-1;Parent=Msa0072750;Name=Msa0072750-mRNA-1;_AED=0.05;_eAED=0.05;_QI=171\|1\|1\|1\|1\|1\|8\|552\|490
chr1_2	exon	45799011	45799379	45799011	ID=Msa0072750-mRNA-1:exon:13901;Parent=Msa0072750-mRNA-1
chr1_2	exon	45799483	45799776	45799483	ID=Msa0072750-mRNA-1:exon:13902;Parent=Msa0072750-mRNA-1
chr1_2	exon	45800623	45800850	45800623	ID=Msa0072750-mRNA-1:exon:13903;Parent=Msa0072750-mRNA-1
chr1_2	exon	45801703	45801768	45801703	ID=Msa0072750-mRNA-1:exon:13904;Parent=Msa0072750-mRNA-1
chr1_2	exon	45803850	45804257	45803850	ID=Msa0072750-mRNA-1:exon:13905;Parent=Msa0072750-mRNA-1
chr1_2	exon	45804362	45804491	45804362	ID=Msa0072750-mRNA-1:exon:13906;Parent=Msa0072750-mRNA-1
chr1_2	exon	45805486	45805571	45805486	ID=Msa0072750-mRNA-1:exon:13907;Parent=Msa0072750-mRNA-1
chr1_2	exon	45805702	45806316	45805702	ID=Msa0072750-mRNA-1:exon:13908;Parent=Msa0072750-mRNA-1
chr1_2	five_prime_UTR	45799011	45799181	45799011	ID=Msa0072750-mRNA-1:five_prime_utr;Parent=Msa0072750-mRNA-1
chr1_2	CDS	45799182	45799379	45799182	ID=Msa0072750-mRNA-1:cds;Parent=Msa0072750-mRNA-1
chr1_2	CDS	45799483	45799776	45799483	ID=Msa0072750-mRNA-1:cds;Parent=Msa0072750-mRNA-1
chr1_2	CDS	45800623	45800850	45800623	ID=Msa0072750-mRNA-1:cds;Parent=Msa0072750-mRNA-1
chr1_2	CDS	45801703	45801768	45801703	ID=Msa0072750-mRNA-1:cds;Parent=Msa0072750-mRNA-1
chr1_2	CDS	45803850	45804257	45803850	ID=Msa0072750-mRNA-1:cds;Parent=Msa0072750-mRNA-1
chr1_2	CDS	45804362	45804491	45804362	ID=Msa0072750-mRNA-1:cds;Parent=Msa0072750-mRNA-1
chr1_2	CDS	45805486	45805571	45805486	ID=Msa0072750-mRNA-1:cds;Parent=Msa0072750-mRNA-1
chr1_2	CDS	45805702	45805764	45805702	ID=Msa0072750-mRNA-1:cds;Parent=Msa0072750-mRNA-1
chr1_2	three_prime_UTR	45805765	45806316	45805765	ID=Msa0072750-mRNA-1:three_prime_utr;Parent=Msa0072750-mRNA-1

Gene Sequence

>Msa0072750

ATGTCAGAACCTTCCACCACCTCTCCTCCACTGCCATCCAAAAGCTGGGCCGATCAAGCCGACGAAGAAACCAATCAAACCTCCACCTCCGCCGCCGACGAAACCTCTTCCCTCAACGTCAATGATTTAACCATCGATGAAGAAAACAAATCCCATTCCAAATCTCTAGATGATCCCGACGACACCAACATTACAGCGGTTACAGCTGGAGACACTCCTTACACATCCGCCACGACGTTTGAAGAGCTATCACTCTCGCCGGAGCTTTTGAAGGGATTATATGTGGAAATGAAGTTTGAAAAACCTAGCAAAATTCAAGCTAAGAGTTTGCCCATGATTCTTAATCCTCCACATAGGGATTTGATTGCTCAAGCACATAATGGTTCTGGAAAAACTACTTGTTTTAATCTTGGGATGCTTAGTAGGGTTGATCCCAATCTGCAAGCTCCTCAAGCTCTATGTATTTGTCCTACTAGAGAGTTGGCTATTCAGAACATTGAGGTTCTCCGTAAGATGGGGAAGTACACGGGGATTAGCTCAGAATGTGCAGTTCCTATGGACAGAAGGGATTCAATTCCGCCATCAAAAAGGGCGCCTATTATGGCGCAGGTTGTTATTGGTACTCCTGGCACAATTAAGAATTTGATTACTTATAAGAAACTTGGAGTGACAAAATTGAAGATTCTCGTTTTTGATGAGGCGGATCAAATGCTTGCTGAGGATGGATTTAGAGATGATTCTCTGAGAATAATGAAAGAAATAGAGAGATTCAATTCAAGCTGTCAGGTTCTTCTGTTTTCTGCTACATTTAATGACACTGTCAAGAATTTTGCTACAAGGGTTGTTGGGAAAAAGGAGCATAATGAACTTTTTGTGAAGAAAGAGGAGCTATCTTTAGATGCAGTAAAACAGTACAAAGTTCTTGTTCCTGACGAGCTTGCTAAGATTGACGTGATTAAAGATTATATATTTGAAATAGGAGAGAATGTGGGGCAAACTATTATATTTGTGCGCACTAGAAATAGTGCAAAAATGTTGCACAAAGCTCTTGTTGATTTAGGCTATGAGGTCACTTCCATACAAGGTGCTCTTGACCATGATGATAGAGACAAGATCGTCAAAGAGTTCAAAGATGGTTTGACTCAGGTTCTTATATCGACCGATGTTCTTGCCCGTGGCTTTGATCAGCAACAGGTTAATTTGGTTATAAACTATGATCTTCCACTGAAGTACTCTGCTGAGTACACCCGTGGCCAAGAACAAGAGCCTGATTATGAGGTGTATTTGCACAGGGTTGGTAGGGCTGGGCGATTTGGGCGCAAGGGGGCTGTATTTAACCTGATATGTGGTGAAAGGGATGAAAAAACCTTGTCAAAGATTGAAAAACATTTTGGCACCTATATAAAAGAGGTGAAAGACAGAAGTGTTGAAGACTATAAAGTTGCTCTTAAAGAAGCTGGTTTACTGTTTTGA

Protein sequence

>Msa0072750

MSEPSTTSPPLPSKSWADQADEETNQTSTSAADETSSLNVNDLTIDEENKSHSKSLDDPDDTNITAVTAGDTPYTSATTFEELSLSPELLKGLYVEMKFEKPSKIQAKSLPMILNPPHRDLIAQAHNGSGKTTCFNLGMLSRVDPNLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDRRDSIPPSKRAPIMAQVVIGTPGTIKNLITYKKLGVTKLKILVFDEADQMLAEDGFRDDSLRIMKEIERFNSSCQVLLFSATFNDTVKNFATRVVGKKEHNELFVKKEELSLDAVKQYKVLVPDELAKIDVIKDYIFEIGENVGQTIIFVRTRNSAKMLHKALVDLGYEVTSIQGALDHDDRDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLVINYDLPLKYSAEYTRGQEQEPDYEVYLHRVGRAGRFGRKGAVFNLICGERDEKTLSKIEKHFGTYIKEVKDRSVEDYKVALKEAGLLF*