AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0557320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0557320 MtrunA17_Chr4g0046381 98.023 1062 18 2 1 1061 1 1060 0.0 2134
Msa0557320 MtrunA17_Chr8g0367751 98.701 154 2 0 427 580 1 154 7.14e-100 311
Msa0557320 MtrunA17_Chr7g0260571 28.861 395 244 13 49 429 41 412 2.17e-31 131
Msa0557320 MtrunA17_Chr1g0184871 34.752 141 89 2 49 187 37 176 5.74e-22 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0557320 AT5G46070.1 63.594 1074 364 8 1 1059 1 1062 0.0 1322
Msa0557320 AT1G03830.2 33.211 1093 573 17 37 1061 10 1013 1.57e-160 501
Msa0557320 AT1G03830.1 32.113 1093 563 19 37 1061 10 991 8.81e-145 459
Msa0557320 AT2G38840.1 30.446 381 234 13 49 421 42 399 5.99e-33 136

Find 247 sgRNAs with CRISPR-Local

Find 634 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATTCGTGTTAGAGCTTC+TGG 0.217599 4_1:+55632329 Msa0557320:CDS
TTGATGTAGGGAGTCAATTT+TGG 0.236521 4_1:-55638809 None:intergenic
GAACAGCCAGTGAGAATATC+TGG 0.241610 4_1:-55632035 None:intergenic
TCAGATTCTTGAACAACTTT+TGG 0.243272 4_1:+55638711 Msa0557320:CDS
TGAAGAATAGCGACGGCTTC+TGG 0.244650 4_1:-55630573 None:intergenic
TTTGGCTTCTGAAGTTTATA+TGG 0.244661 4_1:+55634247 Msa0557320:CDS
TTCAAATGCCATACATTCTA+TGG 0.256941 4_1:+55636717 Msa0557320:CDS
ATAATGTAGCTCGTCTAATA+TGG 0.265458 4_1:-55639519 None:intergenic
TGAATATCTCTTCGAAATTC+AGG 0.265912 4_1:-55633337 None:intergenic
CCATTCAAGGTCCTGGAAAA+TGG 0.269211 4_1:+55637058 Msa0557320:CDS
TAATTTCTTCTTATCGTTGA+TGG 0.287384 4_1:-55637388 None:intergenic
GAAGGATTTAGAAGCACTTC+TGG 0.288775 4_1:+55638657 Msa0557320:CDS
TTGGTGGCAGGACTTCTATT+TGG 0.301399 4_1:+55632532 Msa0557320:intron
AAGACTTCCGCGTCTGAAAT+AGG 0.302341 4_1:+55632356 Msa0557320:CDS
GTCAGTTCTCGCTTAAGCTT+CGG 0.302731 4_1:-55639099 None:intergenic
TCAGTTCTCGCTTAAGCTTC+GGG 0.316124 4_1:-55639098 None:intergenic
GCTTCAGAAATTCATCAAAA+AGG 0.324812 4_1:+55634487 Msa0557320:CDS
CTGCACTACTGCGGGATTTG+AGG 0.333363 4_1:-55637599 None:intergenic
AGAAGAGTTCTCTGGAACTT+TGG 0.337253 4_1:+55637797 Msa0557320:CDS
GTGCCGTAGGGCTTATGATT+TGG 0.341173 4_1:+55634229 Msa0557320:CDS
ATAGTTGCTCCAACTTGCTT+TGG 0.353087 4_1:-55633394 None:intergenic
TGTATCATAACTCCTTATCT+TGG 0.353386 4_1:-55638197 None:intergenic
TAGATTGAACCACCATCTTC+TGG 0.355525 4_1:-55639012 None:intergenic
TGTTTGTGGTCGTGCTCGCC+AGG 0.358739 4_1:+55630626 Msa0557320:CDS
ATCGGTGTCGTTTCTGTTTG+TGG 0.362431 4_1:+55630612 Msa0557320:CDS
AGGGTGAAGCATTCCCTATC+TGG 0.363281 4_1:-55633160 None:intergenic
CACATACACAGGCAAATAAC+CGG 0.367024 4_1:+55638749 Msa0557320:CDS
AACTCTGAAATTAGAGTTGA+AGG 0.370925 4_1:+55638006 Msa0557320:CDS
TACTATTTCTTCCTCCTGGC+AGG 0.371704 4_1:+55633486 Msa0557320:CDS
GTAGACAAGGCGAATAGCTC+TGG 0.375481 4_1:-55630520 None:intergenic
CTTGCTTTGCGGTCTGTTCA+AGG 0.378443 4_1:+55632602 Msa0557320:CDS
TTCATTCAACCGACGTTGTA+AGG 0.380049 4_1:-55637286 None:intergenic
AGGAAGGGAGAAAGATAATC+TGG 0.381254 4_1:+55638549 Msa0557320:CDS
CTTTGTATGATCCTCTTCAT+TGG 0.383035 4_1:-55639067 None:intergenic
TGCACTACTGCGGGATTTGA+GGG 0.400154 4_1:-55637598 None:intergenic
TTGCTTCCCTCTCATATGAC+TGG 0.404679 4_1:-55638288 None:intergenic
GACCCTGTACCAAAGGGCTT+TGG 0.408344 4_1:+55631784 Msa0557320:CDS
AGAGAAGGCAGCAATTGTTC+AGG 0.413046 4_1:+55637731 Msa0557320:CDS
CCTTGTCTACTGCGATGAAA+AGG 0.414963 4_1:+55630533 Msa0557320:CDS
TTGAAGAGGACCGCACTTGA+TGG 0.416779 4_1:+55631822 Msa0557320:CDS
TGCCTACTATTTCTTCCTCC+TGG 0.418883 4_1:+55633482 Msa0557320:CDS
CTTGTAATGCTTCTGATGCT+AGG 0.420952 4_1:+55636758 Msa0557320:CDS
TTCACTGGCTTCCAGCCGCT+TGG 0.422240 4_1:-55637328 None:intergenic
CATCCAAAGCCCTTTGGTAC+AGG 0.424224 4_1:-55631787 None:intergenic
CAACCGATGGTAAGCGATTG+AGG 0.430668 4_1:+55638881 Msa0557320:CDS
TGCTGCTGCCAACCTTGCTT+CGG 0.431643 4_1:-55637622 None:intergenic
TTACAAAAGGAATGCATTCA+TGG 0.431741 4_1:+55636678 Msa0557320:CDS
AGCAACAAGATCTTTCTTCA+TGG 0.439505 4_1:-55639163 None:intergenic
CTTAGGACTGGTTGTACTCC+TGG 0.439972 4_1:-55638980 None:intergenic
TATTCTTCAGAGGTGATAAC+GGG 0.440268 4_1:+55639200 Msa0557320:exon
GATAGAGCACGGGCTGAAGC+AGG 0.446378 4_1:+55638436 Msa0557320:CDS
CTCTAGTAAGCAGGAATCCA+TGG 0.447658 4_1:+55637500 Msa0557320:CDS
TGCTTCGGCTGCACTACTGC+GGG 0.453229 4_1:-55637607 None:intergenic
CATTGTTTAAAGGTCGTACA+AGG 0.457275 4_1:-55633180 None:intergenic
TTCTAGCTTATTGAAAACAT+TGG 0.457291 4_1:+55637476 Msa0557320:CDS
CCTCTCATATGACTGGGCCT+TGG 0.458441 4_1:-55638281 None:intergenic
AACAGATCAAATAGATAGAT+AGG 0.458492 4_1:-55639573 None:intergenic
TATCTATTACCCTCTTGAAA+AGG 0.460525 4_1:-55637236 None:intergenic
GTACCAAAGGGCTTTGGATG+TGG 0.460841 4_1:+55631790 Msa0557320:CDS
ACTCACTTCCTCAGGTGGCT+TGG 0.464273 4_1:-55634285 None:intergenic
GCAAGCTAATCGTCGCTCAC+TGG 0.465514 4_1:+55637443 Msa0557320:CDS
GATTGTGGTGACGCATCGGC+GGG 0.465545 4_1:-55630447 None:intergenic
TTGCTGTCTTCTTGCAGCAA+AGG 0.466814 4_1:+55637088 Msa0557320:CDS
GCGAATAGCTCTGGGTGGTC+CGG 0.467021 4_1:-55630511 None:intergenic
GCAACAAGATCTTTCTTCAT+GGG 0.467500 4_1:-55639162 None:intergenic
TGGCTGTGTGTACTTAGGAC+TGG 0.467783 4_1:-55638992 None:intergenic
AGCAAGTTCTAGATAGTCTC+GGG 0.469812 4_1:-55632585 None:intergenic
AGCAATGATTATCATATTGT+AGG 0.471375 4_1:+55639393 Msa0557320:three_prime_UTR
TGAAGCAGGCATGGCTCAGA+AGG 0.471929 4_1:+55638450 Msa0557320:CDS
TAAGGGGAGCTAAAAGAGCC+AGG 0.473037 4_1:+55638962 Msa0557320:CDS
ACTATCTAGAACTTGCTTTG+CGG 0.474260 4_1:+55632591 Msa0557320:CDS
CGGAGTGATAAAGAAGCAAC+AGG 0.477719 4_1:-55639246 None:intergenic
GAATATGAAAAGTCCATTCA+AGG 0.479415 4_1:+55637045 Msa0557320:CDS
CGATGCGTCACCACAATCTC+CGG 0.482133 4_1:+55630452 Msa0557320:CDS
ATCTGAGTTCAAAAGATTTG+AGG 0.483402 4_1:+55638354 Msa0557320:CDS
CTCATATCGCTTGATGTACT+CGG 0.485796 4_1:-55637361 None:intergenic
GCTTCTTTATCACTCCGTCT+AGG 0.486784 4_1:+55639252 Msa0557320:three_prime_UTR
CGTGCCATCAAAACTTCCTA+TGG 0.486969 4_1:-55639416 None:intergenic
GTCTTAAGAGAAGAGTTCTC+TGG 0.488034 4_1:+55637789 Msa0557320:CDS
GAAGATGGCCTCGCCGGCGC+CGG 0.491115 4_1:-55630471 None:intergenic
GAAAAGTCCATTCAAGGTCC+TGG 0.494569 4_1:+55637051 Msa0557320:CDS
GACCTTACTGACCAAGCGGC+TGG 0.494825 4_1:+55637317 Msa0557320:CDS
AGATGGTGGTTCAATCTATG+AGG 0.494878 4_1:+55639017 Msa0557320:CDS
ACTTAGTCAGCTCTTGATGT+AGG 0.496077 4_1:-55638822 None:intergenic
AGCAAGGTTGGCAGCAGCAA+GGG 0.496730 4_1:+55637626 Msa0557320:CDS
CTTGTCTACTGCGATGAAAA+GGG 0.497647 4_1:+55630534 Msa0557320:CDS
GGAAGCAATAGTATATCAGC+AGG 0.497850 4_1:+55638303 Msa0557320:CDS
AATAGATGCTTATGATCAAA+CGG 0.498795 4_1:+55631881 Msa0557320:CDS
CTCGCCGGCGCCGGAGATTG+TGG 0.498832 4_1:-55630462 None:intergenic
AACATTGGACTCTAGTAAGC+AGG 0.500408 4_1:+55637491 Msa0557320:CDS
ACATTATTATTAATTAAGAC+TGG 0.500975 4_1:+55639535 Msa0557320:three_prime_UTR
TTGAAGAAGCAGAGTGCCGT+AGG 0.503816 4_1:+55634216 Msa0557320:CDS
TCTTCTGGCTGTGTGTACTT+AGG 0.505864 4_1:-55638997 None:intergenic
GAAGAGTGAGATGCAGAGAC+TGG 0.507152 4_1:+55638474 Msa0557320:CDS
TTGAACAACAGGATTACAAA+AGG 0.507556 4_1:+55636665 Msa0557320:intron
GAGTGCATCAAGATAAGATT+CGG 0.507604 4_1:-55633446 None:intergenic
GAACTGACAAAACATAACTT+TGG 0.508057 4_1:+55639114 Msa0557320:CDS
TTGTAATGCTTCTGATGCTA+GGG 0.508274 4_1:+55636759 Msa0557320:CDS
GTATTCTTCAGAGGTGATAA+CGG 0.508537 4_1:+55639199 Msa0557320:exon
TGCTTCCCTCTCATATGACT+GGG 0.509387 4_1:-55638287 None:intergenic
GCTCCACATCCAAAGCCCTT+TGG 0.509572 4_1:-55631793 None:intergenic
TTCCAGCCGCTTGGTCAGTA+AGG 0.510381 4_1:-55637319 None:intergenic
TGAAAATGATCTACAGCGAC+TGG 0.510995 4_1:+55633201 Msa0557320:CDS
ATTGGTACTTCTGCTCAAGA+TGG 0.512425 4_1:-55638333 None:intergenic
AGCACGGGCTGAAGCAGGCA+TGG 0.516913 4_1:+55638441 Msa0557320:CDS
TCTTCATCTTCTCAGTTCAC+CGG 0.517270 4_1:+55630492 Msa0557320:CDS
TAGTGCAGCCGAAGCAAGGT+TGG 0.519438 4_1:+55637614 Msa0557320:CDS
GATGAAGAAGATGGCCTCGC+CGG 0.522103 4_1:-55630477 None:intergenic
AGATCTTGTTGCTCTGTATG+AGG 0.522535 4_1:+55639173 Msa0557320:CDS
CCATACATTCTATGGAAAAG+AGG 0.523129 4_1:+55636725 Msa0557320:CDS
AGGAGGCTGATGAGTGGAAA+CGG 0.523697 4_1:+55637670 Msa0557320:CDS
GTAAGCAGGAATCCATGGAT+TGG 0.527042 4_1:+55637505 Msa0557320:CDS
CAAAACATAACTTTGGTGAT+CGG 0.527476 4_1:+55639121 Msa0557320:CDS
TTGGAAAAGAAAATATGAGC+AGG 0.527784 4_1:+55637524 Msa0557320:CDS
CGAGTACATCAAGCGATATG+AGG 0.528266 4_1:+55637362 Msa0557320:CDS
CAATTTGTTTAACCGAAACA+AGG 0.530008 4_1:+55630419 Msa0557320:CDS
GTTTCGAATGAATGAAACAT+TGG 0.533871 4_1:+55638843 Msa0557320:CDS
TTCGTGCTCTATTCCCAGAT+AGG 0.534115 4_1:+55633146 Msa0557320:CDS
CTTAGTCAGCTCTTGATGTA+GGG 0.535301 4_1:-55638821 None:intergenic
TTGCTTCGGCTGCACTACTG+CGG 0.535804 4_1:-55637608 None:intergenic
ATCTGGGAATAGAGCACGAA+TGG 0.537348 4_1:-55633143 None:intergenic
GAGACTGGCAATGGAAAGAC+TGG 0.537477 4_1:+55638489 Msa0557320:CDS
AATGCTAGTGCTGTAGGAGT+TGG 0.539159 4_1:+55634437 Msa0557320:CDS
ACAAGCTCAGTCTGCTCAAG+AGG 0.539174 4_1:+55637650 Msa0557320:CDS
TGATTTAAAACTAACCTGCC+AGG 0.540360 4_1:-55633500 None:intergenic
CGCTATTCTTCAACTCGTCA+AGG 0.540905 4_1:+55630584 Msa0557320:CDS
CTCTTGAAAAGGTCAAGCAC+AGG 0.541952 4_1:-55637225 None:intergenic
GATAGATTACTCACTTCCTC+AGG 0.542341 4_1:-55634293 None:intergenic
TTGCTTTGCGGTCTGTTCAA+GGG 0.544567 4_1:+55632603 Msa0557320:CDS
GATTTGAGGAGGTTCAAGAA+AGG 0.544667 4_1:+55638368 Msa0557320:CDS
GCAGAGAGAGACTCTCAGCC+CGG 0.547945 4_1:-55638768 None:intergenic
CTTCCTCAGGTGGCTTGGAA+CGG 0.548072 4_1:-55634280 None:intergenic
TCGTGCTCTATTCCCAGATA+GGG 0.548667 4_1:+55633147 Msa0557320:CDS
CACATCGACCCTGTACCAAA+GGG 0.549082 4_1:+55631778 Msa0557320:CDS
GTCACCACAATCTCCGGCGC+CGG 0.549829 4_1:+55630458 Msa0557320:CDS
AAGCAAGTTCTAGATAGTCT+CGG 0.551084 4_1:-55632586 None:intergenic
CACAATCTCCGGCGCCGGCG+AGG 0.551868 4_1:+55630463 Msa0557320:CDS
TCAAGTGCGGTCCTCTTCAA+AGG 0.551883 4_1:-55631819 None:intergenic
GAGAGGAGAATTGAAACTCT+AGG 0.553809 4_1:+55638529 Msa0557320:CDS
GGGTGAAGCATTCCCTATCT+GGG 0.554975 4_1:-55633159 None:intergenic
AACCGATGGTAAGCGATTGA+GGG 0.557916 4_1:+55638882 Msa0557320:CDS
CGGAGATTGTGGTGACGCAT+CGG 0.559766 4_1:-55630451 None:intergenic
CTGTAGGAGTTGGTGCAGCT+AGG 0.560333 4_1:+55634447 Msa0557320:CDS
GGAGAATTGAAACTCTAGGA+AGG 0.560800 4_1:+55638533 Msa0557320:CDS
ACAAGCAGTTCATAAGTCAA+TGG 0.561022 4_1:+55634406 Msa0557320:CDS
AGCAAAATCTGCTCTAGAGA+AGG 0.562179 4_1:+55637716 Msa0557320:CDS
TCGGTGATACCAATCAATAC+AGG 0.562467 4_1:-55633427 None:intergenic
AAGCAAGGTTGGCAGCAGCA+AGG 0.563979 4_1:+55637625 Msa0557320:CDS
GAAGGTGCAACAAAGAGAGA+AGG 0.564197 4_1:+55638639 Msa0557320:CDS
ATCCAAAGCCCTTTGGTACA+GGG 0.569599 4_1:-55631786 None:intergenic
GTTTGTGGTCGTGCTCGCCA+GGG 0.569612 4_1:+55630627 Msa0557320:CDS
AGAACAAGGCCAAAGCAAGT+TGG 0.571365 4_1:+55633385 Msa0557320:CDS
ATTCTATGGAAAAGAGGCTG+AGG 0.571876 4_1:+55636731 Msa0557320:CDS
ATGCCGTGGTTACTGACATA+CGG 0.572365 4_1:+55639293 Msa0557320:three_prime_UTR
TACCCTCAATCGCTTACCAT+CGG 0.572734 4_1:-55638884 None:intergenic
GAGAGCAACGGATTCAGAGA+AGG 0.573561 4_1:+55638585 Msa0557320:CDS
ACACATCGACCCTGTACCAA+AGG 0.575105 4_1:+55631777 Msa0557320:CDS
AGTTGCGAAGCTCGAAGAGA+AGG 0.575118 4_1:+55638621 Msa0557320:CDS
GTTGGAGCAACTATGATGAC+AGG 0.575865 4_1:+55633403 Msa0557320:CDS
CTGCAGCTCTTAGGAAGCAG+TGG 0.576573 4_1:+55631735 Msa0557320:intron
AACTGAGAAGATGAAGAAGA+TGG 0.577774 4_1:-55630486 None:intergenic
AGATTGTGGTGACGCATCGG+CGG 0.578639 4_1:-55630448 None:intergenic
AAGTACACACAGCCAGAAGA+TGG 0.578688 4_1:+55639000 Msa0557320:CDS
AGCTCAGTCTGCTCAAGAGG+AGG 0.581087 4_1:+55637653 Msa0557320:CDS
CACAGATTGAGAGGGCTGAG+AGG 0.582400 4_1:+55638512 Msa0557320:CDS
GCAGTAGTGCAGCCGAAGCA+AGG 0.584397 4_1:+55637610 Msa0557320:CDS
AGCTGCAAGGGCTACTGAAG+TGG 0.586115 4_1:+55638411 Msa0557320:CDS
TGAGTTCAAAAGATTTGAGG+AGG 0.586772 4_1:+55638357 Msa0557320:CDS
TGCCAGGAGGAAGAAATAGT+AGG 0.587287 4_1:-55633484 None:intergenic
ACAAACAGAAACGACACCGA+TGG 0.587350 4_1:-55630610 None:intergenic
TAGACAAGGCGAATAGCTCT+GGG 0.588152 4_1:-55630519 None:intergenic
ATGACAGGTCCTGTATTGAT+TGG 0.589135 4_1:+55633418 Msa0557320:CDS
AAAGACTGGCACAGATTGAG+AGG 0.589219 4_1:+55638503 Msa0557320:CDS
CTGAAGTGGCTGATAGAGCA+CGG 0.590845 4_1:+55638425 Msa0557320:CDS
GAGGACCGCACTTGATGGAA+CGG 0.593749 4_1:+55631827 Msa0557320:CDS
AAACAAGCAGACACAGTTGA+GGG 0.594533 4_1:+55637761 Msa0557320:CDS
GTTTCATTTACTCAGATGGG+TGG 0.594616 4_1:+55632254 Msa0557320:intron
TAGCATGTTCATTTACAACC+AGG 0.595059 4_1:+55632065 Msa0557320:CDS
TTTATCAAGGCAGAAAGCTG+AGG 0.595083 4_1:+55637548 Msa0557320:CDS
GAGAATTGAAACTCTAGGAA+GGG 0.595834 4_1:+55638534 Msa0557320:CDS
TTCTCGCTTAAGCTTCGGGA+TGG 0.596156 4_1:-55639094 None:intergenic
TGAAGTGGCTGATAGAGCAC+GGG 0.596582 4_1:+55638426 Msa0557320:CDS
AACAGCCAGTGAGAATATCT+GGG 0.596996 4_1:-55632034 None:intergenic
TCTAGATCTCATTGATGCCG+TGG 0.597767 4_1:+55639279 Msa0557320:three_prime_UTR
AGGGAGAAAGATAATCTGGA+AGG 0.598572 4_1:+55638553 Msa0557320:CDS
TGAGATGCAGAGACTGGCAA+TGG 0.599747 4_1:+55638480 Msa0557320:CDS
CAAACAGAAACGACACCGAT+GGG 0.600094 4_1:-55630609 None:intergenic
CAGCTCTTAGGAAGCAGTGG+TGG 0.601493 4_1:+55631738 Msa0557320:intron
AAGCGGCTGGAAGCCAGTGA+AGG 0.601767 4_1:+55637330 Msa0557320:CDS
CTCAAGAGGAGGCTGATGAG+TGG 0.603803 4_1:+55637664 Msa0557320:CDS
AGATTACTCACTTCCTCAGG+TGG 0.604534 4_1:-55634290 None:intergenic
AAATAGTAGGCACGGCACCA+TGG 0.605148 4_1:-55633471 None:intergenic
TTCTATGGAAAAGAGGCTGA+GGG 0.608007 4_1:+55636732 Msa0557320:CDS
TAGGGTTGATAATGTTGCAA+AGG 0.610623 4_1:+55636777 Msa0557320:CDS
TCTGCAGCTACAATCTGCAC+AGG 0.611058 4_1:+55638786 Msa0557320:CDS
TGAAAAGGGAAAGTTCCGTA+TGG 0.611276 4_1:+55630548 Msa0557320:CDS
GCAGCTAGGAAGAAATATGA+AGG 0.611898 4_1:+55634461 Msa0557320:CDS
CTTCTACTATTAGACAGTGA+AGG 0.613868 4_1:+55631858 Msa0557320:CDS
ATTATCATATTGTAGGCCAT+AGG 0.614814 4_1:+55639400 Msa0557320:three_prime_UTR
GGAGGAAGAAATAGTAGGCA+CGG 0.614963 4_1:-55633479 None:intergenic
TGTGGAGCGCACCTTTGAAG+AGG 0.615203 4_1:+55631808 Msa0557320:CDS
AGGTGAATTGCAGAGAGCAA+CGG 0.618861 4_1:+55638573 Msa0557320:CDS
CAGCACCCAGATATTCTCAC+TGG 0.619533 4_1:+55632029 Msa0557320:CDS
AATGAAATCTGAAAATGCCA+AGG 0.620388 4_1:+55638264 Msa0557320:CDS
TAGCTTGCAATTCAGTAATG+CGG 0.623157 4_1:-55637428 None:intergenic
ATGAGGAATGTATTCTTCAG+AGG 0.626001 4_1:+55639190 Msa0557320:CDS
AGAGCGTGAGGCACATACAC+AGG 0.626998 4_1:+55638738 Msa0557320:CDS
TATCTTGATGCACTCAACCA+TGG 0.627907 4_1:+55633454 Msa0557320:CDS
TAGTCAGCAAGCCAATGAAG+AGG 0.628518 4_1:+55639056 Msa0557320:CDS
TCAAGGCAGAAAGCTGAGGA+AGG 0.628836 4_1:+55637552 Msa0557320:CDS
CGACGGCTTCTGGATCCATA+CGG 0.629966 4_1:-55630563 None:intergenic
AGGCTGCTGAGTCCAAGATA+AGG 0.630324 4_1:+55638185 Msa0557320:intron
ACATACACAGGCAAATAACC+GGG 0.631070 4_1:+55638750 Msa0557320:CDS
CAAACAAGCAGACACAGTTG+AGG 0.634550 4_1:+55637760 Msa0557320:CDS
CAAGGCCCAGTCATATGAGA+GGG 0.637107 4_1:+55638282 Msa0557320:CDS
GACGAGTTGAAGAATAGCGA+CGG 0.639893 4_1:-55630580 None:intergenic
TCTTGAAAAGGTCAAGCACA+GGG 0.640354 4_1:-55637224 None:intergenic
CCAAGGCCCAGTCATATGAG+AGG 0.640589 4_1:+55638281 Msa0557320:CDS
GATGGTGGTTCAATCTATGA+GGG 0.640909 4_1:+55639018 Msa0557320:CDS
CAACTCGTCAAGGAACCCAT+CGG 0.642449 4_1:+55630594 Msa0557320:CDS
AAGCCAAATCATAAGCCCTA+CGG 0.644770 4_1:-55634232 None:intergenic
GTTCTCTTGCCTTACAACGT+CGG 0.646107 4_1:+55637277 Msa0557320:CDS
TGCTGATTCTGTACAAGACA+TGG 0.648072 4_1:+55638921 Msa0557320:CDS
TTCAATCTATGAGGGTGCAG+AGG 0.648196 4_1:+55639026 Msa0557320:CDS
TCAGATGGGTGGTATAGATG+AGG 0.652331 4_1:+55632265 Msa0557320:intron
TGACCGTTCCAAGCCACCTG+AGG 0.652751 4_1:+55634277 Msa0557320:CDS
AGTCCGTATGTCAGTAACCA+CGG 0.654364 4_1:-55639296 None:intergenic
GAGATCTAGACAGACCTAGA+CGG 0.655685 4_1:-55639266 None:intergenic
AGTAAGCTAAAGACAACCGA+TGG 0.658276 4_1:+55638868 Msa0557320:CDS
AGATGACCTTACTGACCAAG+CGG 0.663172 4_1:+55637313 Msa0557320:CDS
TGAAGAAGCAGAGTGCCGTA+GGG 0.666325 4_1:+55634217 Msa0557320:CDS
AAGACTGGCACAGATTGAGA+GGG 0.666890 4_1:+55638504 Msa0557320:CDS
ATTGTTTAAAGGTCGTACAA+GGG 0.675884 4_1:-55633179 None:intergenic
TTTGAGTGACTAGAGAAAGA+CGG 0.676465 4_1:-55632298 None:intergenic
TTGAGGGTAGAGAATGACAA+TGG 0.690220 4_1:+55638898 Msa0557320:CDS
GTACTCCGTTCCATCAAGTG+CGG 0.691482 4_1:-55631832 None:intergenic
TTTAAAACTAACCTGCCAGG+AGG 0.693638 4_1:-55633497 None:intergenic
TGGATAAAGATAAAACACAC+AGG 0.695749 4_1:+55638677 Msa0557320:CDS
ATTGTGGTGACGCATCGGCG+GGG 0.700400 4_1:-55630446 None:intergenic
TTCTTCAGAGGTGATAACGG+GGG 0.702520 4_1:+55639202 Msa0557320:exon
CAAAAGGAATGCATTCATGG+AGG 0.709466 4_1:+55636681 Msa0557320:CDS
TACACACAGCCAGAAGATGG+TGG 0.710446 4_1:+55639003 Msa0557320:CDS
ATTCTTCAGAGGTGATAACG+GGG 0.718862 4_1:+55639201 Msa0557320:exon
GCAAGTTCTAGATAGTCTCG+GGG 0.731190 4_1:-55632584 None:intergenic
AAACTGTCCTATTTCAGACG+CGG 0.731251 4_1:-55632363 None:intergenic
ACAAGGCGAATAGCTCTGGG+TGG 0.744749 4_1:-55630516 None:intergenic
ATACAGAAATATCGTCACTG+AGG 0.776970 4_1:+55638215 Msa0557320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGCAAAAAAAAAAAAA+AGG + chr4_1:55636951-55636970 Msa0557320:intron 10.0%
!!! ATTTGTTGATGATTTTTTTT+TGG + chr4_1:55631098-55631117 Msa0557320:intron 15.0%
!!! ATAGGTTTTTTATTCATAAT+TGG + chr4_1:55632835-55632854 Msa0557320:intron 15.0%
!!! TAGGTTTTTTATTCATAATT+GGG + chr4_1:55632836-55632855 Msa0557320:intron 15.0%
!! TCTTCATTTATTAATAACTT+TGG - chr4_1:55634071-55634090 None:intergenic 15.0%
!! TAAAAGTTATAAGCATATTA+GGG + chr4_1:55634568-55634587 Msa0557320:intron 15.0%
!!! ACTATTATTTTATCTGTATT+CGG + chr4_1:55634706-55634725 Msa0557320:intron 15.0%
!!! TAACTAATTATTTTGCATAA+GGG - chr4_1:55636070-55636089 None:intergenic 15.0%
!!! ATAACTAATTATTTTGCATA+AGG - chr4_1:55636071-55636090 None:intergenic 15.0%
!! TATGCAAAATAATTAGTTAT+TGG + chr4_1:55636071-55636090 Msa0557320:intron 15.0%
!! ATAATTAGTTATTGGTATAT+TGG + chr4_1:55636079-55636098 Msa0557320:intron 15.0%
!!! TCAAGTCTTTATTTTTAATA+TGG + chr4_1:55636570-55636589 Msa0557320:intron 15.0%
!! AATAATTAATATTGAACAAC+AGG + chr4_1:55636654-55636673 Msa0557320:intron 15.0%
!! ACATTATTATTAATTAAGAC+TGG + chr4_1:55639535-55639554 Msa0557320:three_prime_UTR 15.0%
!!! GAATTCTAGTAGATTTTTAT+CGG + chr4_1:55630682-55630701 Msa0557320:intron 20.0%
!!! TTTTATCGGTTTTGAAATTT+AGG + chr4_1:55630696-55630715 Msa0557320:intron 20.0%
!!! TTTATCGGTTTTGAAATTTA+GGG + chr4_1:55630697-55630716 Msa0557320:intron 20.0%
!!! AATTTTAAACAAGGTTCATA+AGG - chr4_1:55631319-55631338 None:intergenic 20.0%
!! GATATATATGTAGAACATTA+TGG + chr4_1:55631565-55631584 Msa0557320:intron 20.0%
!!! TTGTTGTTATTATAGATTTG+TGG + chr4_1:55631697-55631716 Msa0557320:intron 20.0%
!!! TACATTTATTTTTACTACAC+AGG + chr4_1:55631999-55632018 Msa0557320:intron 20.0%
!!! ACATTTATTTTTACTACACA+GGG + chr4_1:55632000-55632019 Msa0557320:intron 20.0%
!!! AATTTTTCCTAGGAAAATAT+AGG - chr4_1:55632110-55632129 None:intergenic 20.0%
!!! TTTTCATTATTTCAGAACAT+AGG + chr4_1:55632727-55632746 Msa0557320:intron 20.0%
!!! AGATCATTTTCATTGTTTAA+AGG - chr4_1:55633193-55633212 None:intergenic 20.0%
!!! AATATTGGTTTTGTTGTTAT+TGG + chr4_1:55634182-55634201 Msa0557320:intron 20.0%
!! GTAAAAGTTATAAGCATATT+AGG + chr4_1:55634567-55634586 Msa0557320:intron 20.0%
!! TACAGATAAAATAATAGTCA+AGG - chr4_1:55634704-55634723 None:intergenic 20.0%
!! AATAGTCTAAACAAATACAT+TGG - chr4_1:55634825-55634844 None:intergenic 20.0%
!!! GTATTTGTTTAGACTATTTT+CGG + chr4_1:55634827-55634846 Msa0557320:intron 20.0%
!! AGGTTAGCATTAAAAATATT+TGG - chr4_1:55634897-55634916 None:intergenic 20.0%
!! TTCTCAAATAATTATGCAAA+CGG + chr4_1:55635471-55635490 Msa0557320:intron 20.0%
!!! TTTTTTTTAATCAAGGTTAC+AGG + chr4_1:55635851-55635870 Msa0557320:intron 20.0%
!!! TTTTTTTAATCAAGGTTACA+GGG + chr4_1:55635852-55635871 Msa0557320:intron 20.0%
!!! ATTTTGATCTTATAGCTTAT+AGG - chr4_1:55636028-55636047 None:intergenic 20.0%
!!! AACTAATTATTTTGCATAAG+GGG - chr4_1:55636069-55636088 None:intergenic 20.0%
!! TTAAAAATAAAGACTTGATC+TGG - chr4_1:55636568-55636587 None:intergenic 20.0%
!! TGCAAAAAAAAAAAAAAGGA+TGG + chr4_1:55636955-55636974 Msa0557320:intron 20.0%
!!! ATATTTCTTTAGGAAAAAGA+TGG - chr4_1:55637181-55637200 None:intergenic 20.0%
!! AAACAATATGCAAAAGAAAT+GGG - chr4_1:55637855-55637874 None:intergenic 20.0%
!! TAAACAATATGCAAAAGAAA+TGG - chr4_1:55637856-55637875 None:intergenic 20.0%
! CTAATTACCAATAAATACAC+CGG - chr4_1:55630993-55631012 None:intergenic 25.0%
!! GGTGTATTTATTGGTAATTA+GGG + chr4_1:55630992-55631011 Msa0557320:intron 25.0%
!!! TTTATTGGTAATTAGGGTTT+TGG + chr4_1:55630998-55631017 Msa0557320:intron 25.0%
!! TGATCATTGTAGATTTTTGT+TGG + chr4_1:55631037-55631056 Msa0557320:intron 25.0%
!! GATCATTGTAGATTTTTGTT+GGG + chr4_1:55631038-55631057 Msa0557320:intron 25.0%
!! TCGCAGTTAAATTTTAAACA+AGG - chr4_1:55631328-55631347 None:intergenic 25.0%
!! GAAAAGTTGAATTTTACTCT+TGG - chr4_1:55631436-55631455 None:intergenic 25.0%
! TAGAGATTAATGAGTTGTAT+AGG + chr4_1:55631537-55631556 Msa0557320:intron 25.0%
! AGAGATTAATGAGTTGTATA+GGG + chr4_1:55631538-55631557 Msa0557320:intron 25.0%
! TACAACAATAACAACTAACT+AGG - chr4_1:55631631-55631650 None:intergenic 25.0%
! AATAGATGCTTATGATCAAA+CGG + chr4_1:55631881-55631900 Msa0557320:CDS 25.0%
! GAAAAGATGTACAACAAAAA+GGG - chr4_1:55632203-55632222 None:intergenic 25.0%
! AGAAAAGATGTACAACAAAA+AGG - chr4_1:55632204-55632223 None:intergenic 25.0%
!!! TTTTTGTTGTACATCTTTTC+TGG + chr4_1:55632203-55632222 Msa0557320:intron 25.0%
! GTCATGATATTGTAGTTTAA+TGG + chr4_1:55632456-55632475 Msa0557320:intron 25.0%
! TTATATACCTCAATTACTTC+AGG - chr4_1:55632687-55632706 None:intergenic 25.0%
! ATCCTTTACAAAATTATCCT+AGG - chr4_1:55632796-55632815 None:intergenic 25.0%
! AACAAATCAATTAAACTAGC+AGG - chr4_1:55632872-55632891 None:intergenic 25.0%
! ACAAATAGAATGATTCAAAG+TGG - chr4_1:55632995-55633014 None:intergenic 25.0%
!! CATGCATTTTCAAAAAAGTT+TGG - chr4_1:55633021-55633040 None:intergenic 25.0%
! TTTACAGCACATTGAAAAAT+TGG + chr4_1:55633050-55633069 Msa0557320:intron 25.0%
!!! AGTTTGTTTTTGAAAGAACA+AGG + chr4_1:55633371-55633390 Msa0557320:CDS 25.0%
! TCATTAAGATTATCCTATCA+AGG + chr4_1:55633633-55633652 Msa0557320:intron 25.0%
!!! GATCATTTTATTTCCTTGAT+AGG - chr4_1:55633649-55633668 None:intergenic 25.0%
! TCGTATCAAATAATGTATAG+CGG - chr4_1:55633804-55633823 None:intergenic 25.0%
! AACACTTGATCACATTAAAA+GGG - chr4_1:55634002-55634021 None:intergenic 25.0%
!! AAAAATAGTTTTCCAGAGTT+TGG + chr4_1:55634118-55634137 Msa0557320:intron 25.0%
! AAAATGTAAGTCAACAATCT+CGG + chr4_1:55634146-55634165 Msa0557320:intron 25.0%
!! TAACCTTTTAAACCTGAAAT+TGG + chr4_1:55634911-55634930 Msa0557320:intron 25.0%
!! AACCTTTTAAACCTGAAATT+GGG + chr4_1:55634912-55634931 Msa0557320:intron 25.0%
! AAGAACATTTATTGTCTATC+AGG - chr4_1:55635157-55635176 None:intergenic 25.0%
! ATAGTTGATTGAGATCATTA+TGG - chr4_1:55635278-55635297 None:intergenic 25.0%
! TGCATAATTATTTGAGAAGA+AGG - chr4_1:55635469-55635488 None:intergenic 25.0%
! TCTCAAATAATTATGCAAAC+GGG + chr4_1:55635472-55635491 Msa0557320:intron 25.0%
!! CAAACGGGATATTTTATAAA+TGG + chr4_1:55635487-55635506 Msa0557320:intron 25.0%
!!! TTTTTTAATCAAGGTTACAG+GGG + chr4_1:55635853-55635872 Msa0557320:intron 25.0%
! ATAAGCTCATTTGACTAAAA+AGG - chr4_1:55635996-55636015 None:intergenic 25.0%
! GTATATTGGAGTGATTATTA+TGG + chr4_1:55636093-55636112 Msa0557320:intron 25.0%
!! ACCATATCATTTTCAAATAC+AGG - chr4_1:55636149-55636168 None:intergenic 25.0%
! ATATTGCACATATAAGAATC+AGG - chr4_1:55636327-55636346 None:intergenic 25.0%
! ACCCTGTTATAGTATATTTA+GGG + chr4_1:55636483-55636502 Msa0557320:intron 25.0%
! TCCCTAAATATACTATAACA+GGG - chr4_1:55636487-55636506 None:intergenic 25.0%
! AGAATTCCAAATGATAATCA+GGG + chr4_1:55636506-55636525 Msa0557320:intron 25.0%
!!! TCTGTGAAGTTTTTTTTTTG+TGG + chr4_1:55637127-55637146 Msa0557320:intron 25.0%
! AAAAAGATGGAAAAAAAGAC+CGG - chr4_1:55637168-55637187 None:intergenic 25.0%
! CAACAGAAACATATTTCTTT+AGG - chr4_1:55637191-55637210 None:intergenic 25.0%
! TAATTTCTTCTTATCGTTGA+TGG - chr4_1:55637391-55637410 None:intergenic 25.0%
!!! TTCTAGCTTATTGAAAACAT+TGG + chr4_1:55637476-55637495 Msa0557320:CDS 25.0%
!! ATATTTTCTTTTCCAATCCA+TGG - chr4_1:55637520-55637539 None:intergenic 25.0%
!!! AGAGTTGAAGGTAATTTTTT+TGG + chr4_1:55638018-55638037 Msa0557320:intron 25.0%
!!! ATATGACAAACTCTCTTTTT+TGG + chr4_1:55638115-55638134 Msa0557320:intron 25.0%
!!! CTTTTTTGGTGTGTTTATTT+CGG + chr4_1:55638129-55638148 Msa0557320:intron 25.0%
!!! TTTAACTTCTTTTTTCTGTG+TGG + chr4_1:55639335-55639354 Msa0557320:three_prime_UTR 25.0%
! AGCAATGATTATCATATTGT+AGG + chr4_1:55639393-55639412 Msa0557320:three_prime_UTR 25.0%
!!! TAATTAAGACTGGTCTTTTA+CGG + chr4_1:55639545-55639564 Msa0557320:three_prime_UTR 25.0%
! AACAGATCAAATAGATAGAT+AGG - chr4_1:55639576-55639595 None:intergenic 25.0%
!!! TTTCGCTTTTTTTCTCTTTG+GGG - chr4_1:55630369-55630388 None:intergenic 30.0%
!!! CTTTCGCTTTTTTTCTCTTT+GGG - chr4_1:55630370-55630389 None:intergenic 30.0%
!!! ACTTTCGCTTTTTTTCTCTT+TGG - chr4_1:55630371-55630390 None:intergenic 30.0%
! CAATTTGTTTAACCGAAACA+AGG + chr4_1:55630419-55630438 Msa0557320:CDS 30.0%
AAAAAGCTATATCTTGAACC+AGG + chr4_1:55630650-55630669 Msa0557320:CDS 30.0%
!!! GGTTTTGAAATTTAGGGTTT+TGG + chr4_1:55630703-55630722 Msa0557320:intron 30.0%
! TTTCTTCGTAATTAGGGTTT+TGG + chr4_1:55630730-55630749 Msa0557320:intron 30.0%
! CGGTGTATTTATTGGTAATT+AGG + chr4_1:55630991-55631010 Msa0557320:intron 30.0%
! GTAGATTTTTGTTGGGTTTA+TGG + chr4_1:55631045-55631064 Msa0557320:intron 30.0%
!!! TTTTTGGAGTAATGTGTGTT+AGG + chr4_1:55631114-55631133 Msa0557320:intron 30.0%
AAGCAAACAAATCTAGTTGT+TGG + chr4_1:55631198-55631217 Msa0557320:intron 30.0%
! ATCTAGTTGTTGGATTGTTT+TGG + chr4_1:55631208-55631227 Msa0557320:intron 30.0%
! TCTAGTTGTTGGATTGTTTT+GGG + chr4_1:55631209-55631228 Msa0557320:intron 30.0%
TATACAATTCCAACTTATCC+CGG - chr4_1:55631368-55631387 None:intergenic 30.0%
TGCTACAGTAATTATACAAG+CGG - chr4_1:55631458-55631477 None:intergenic 30.0%
! GTTACTCTGATAGTTTTTCT+AGG - chr4_1:55631503-55631522 None:intergenic 30.0%
AGGAAAATATAGGTCTTGAT+AGG - chr4_1:55632100-55632119 None:intergenic 30.0%
! ATCAAGACCTATATTTTCCT+AGG + chr4_1:55632100-55632119 Msa0557320:intron 30.0%
! TAACACACGTAATTTTTCCT+AGG - chr4_1:55632120-55632139 None:intergenic 30.0%
!!! TTGTTTTGATATTCCATGAC+CGG + chr4_1:55632144-55632163 Msa0557320:intron 30.0%
TGATGTTTCATTTACTCAGA+TGG + chr4_1:55632250-55632269 Msa0557320:intron 30.0%
GATGTTTCATTTACTCAGAT+GGG + chr4_1:55632251-55632270 Msa0557320:intron 30.0%
! AGTTTTCCCCAATTTTTGTT+TGG + chr4_1:55632381-55632400 Msa0557320:CDS 30.0%
TAAGAGCCAAACAAAAATTG+GGG - chr4_1:55632390-55632409 None:intergenic 30.0%
GTAAGAGCCAAACAAAAATT+GGG - chr4_1:55632391-55632410 None:intergenic 30.0%
!!! CAATTTTTGTTTGGCTCTTA+CGG + chr4_1:55632390-55632409 Msa0557320:CDS 30.0%
!!! AATTTTTGTTTGGCTCTTAC+GGG + chr4_1:55632391-55632410 Msa0557320:CDS 30.0%
TTACGAACCATTGCAAATAT+TGG + chr4_1:55632418-55632437 Msa0557320:intron 30.0%
GCACTATTTGTGAATAATCT+TGG + chr4_1:55632513-55632532 Msa0557320:intron 30.0%
CTATTTGTGAATAATCTTGG+TGG + chr4_1:55632516-55632535 Msa0557320:intron 30.0%
TACTTCAGGAATGACAAATT+AGG - chr4_1:55632673-55632692 None:intergenic 30.0%
! GACCTAGGATAATTTTGTAA+AGG + chr4_1:55632791-55632810 Msa0557320:intron 30.0%
TGAATAAAAAACCTATCCGA+GGG - chr4_1:55632831-55632850 None:intergenic 30.0%
ATGAATAAAAAACCTATCCG+AGG - chr4_1:55632832-55632851 None:intergenic 30.0%
ATTGTTTAAAGGTCGTACAA+GGG - chr4_1:55633182-55633201 None:intergenic 30.0%
AAAATGTCTGCAAAAGAGTA+TGG - chr4_1:55633264-55633283 None:intergenic 30.0%
! TTTTGCCTTAAATATGCAGT+CGG + chr4_1:55633303-55633322 Msa0557320:intron 30.0%
TGAATATCTCTTCGAAATTC+AGG - chr4_1:55633340-55633359 None:intergenic 30.0%
AATGAAATGAGAAAGTCCAA+CGG - chr4_1:55633618-55633637 None:intergenic 30.0%
GTGATTCAAAAGATCAATCA+AGG - chr4_1:55633965-55633984 None:intergenic 30.0%
GAACACTTGATCACATTAAA+AGG - chr4_1:55634003-55634022 None:intergenic 30.0%
AGAACCAAATTATCATGCAA+AGG + chr4_1:55634088-55634107 Msa0557320:intron 30.0%
AATGCCTTTGCATGATAATT+TGG - chr4_1:55634095-55634114 None:intergenic 30.0%
!! TTTGGCTTCTGAAGTTTATA+TGG + chr4_1:55634247-55634266 Msa0557320:CDS 30.0%
AAACAGTGCAGTCAAAATTA+AGG - chr4_1:55634358-55634377 None:intergenic 30.0%
GCTTCAGAAATTCATCAAAA+AGG + chr4_1:55634487-55634506 Msa0557320:CDS 30.0%
!! TTCTTTTTGTTTAGACTGCA+AGG + chr4_1:55634638-55634657 Msa0557320:intron 30.0%
!! TCTTTTTGTTTAGACTGCAA+GGG + chr4_1:55634639-55634658 Msa0557320:intron 30.0%
GATAATTGACTGTTCAAAGT+AGG + chr4_1:55634753-55634772 Msa0557320:intron 30.0%
TCGGTGAAAAATATCTTGTT+TGG + chr4_1:55634846-55634865 Msa0557320:intron 30.0%
! ACCTTTTAAACCTGAAATTG+GGG + chr4_1:55634913-55634932 Msa0557320:intron 30.0%
AATTTCAAATCCCCAATTTC+AGG - chr4_1:55634926-55634945 None:intergenic 30.0%
!! TGAAATTTCACGCTTTTTGA+AGG + chr4_1:55634939-55634958 Msa0557320:intron 30.0%
TGATTGAGATCATTATGGAA+TGG - chr4_1:55635273-55635292 None:intergenic 30.0%
AATCATAGTGACAAAACATC+GGG - chr4_1:55635383-55635402 None:intergenic 30.0%
CAATCATAGTGACAAAACAT+CGG - chr4_1:55635384-55635403 None:intergenic 30.0%
TGATGTAACTATGATGTGTT+TGG - chr4_1:55635559-55635578 None:intergenic 30.0%
GAAGTTAATCGCATAATTGT+CGG + chr4_1:55635579-55635598 Msa0557320:intron 30.0%
GATGATAAGCTAACTTATAG+TGG + chr4_1:55635713-55635732 Msa0557320:intron 30.0%
ATGATATGCTATAAGCTACT+TGG + chr4_1:55635893-55635912 Msa0557320:intron 30.0%
AAAAATAAGCAATAAGCTCG+TGG + chr4_1:55635946-55635965 Msa0557320:intron 30.0%
GCCTGTATTTGAAAATGATA+TGG + chr4_1:55636145-55636164 Msa0557320:intron 30.0%
TTACATTTCGAATGAGACAT+AGG + chr4_1:55636202-55636221 Msa0557320:intron 30.0%
TGATGCAAAAGAAGAATTTC+TGG + chr4_1:55636427-55636446 Msa0557320:intron 30.0%
CACCCTGTTATAGTATATTT+AGG + chr4_1:55636482-55636501 Msa0557320:intron 30.0%
CTCCCTAAATATACTATAAC+AGG - chr4_1:55636488-55636507 None:intergenic 30.0%
GAGAATTCCAAATGATAATC+AGG + chr4_1:55636505-55636524 Msa0557320:intron 30.0%
!! AAATATTTGTGCCACTTTCT+TGG + chr4_1:55636596-55636615 Msa0557320:intron 30.0%
TTGAACAACAGGATTACAAA+AGG + chr4_1:55636665-55636684 Msa0557320:intron 30.0%
TTACAAAAGGAATGCATTCA+TGG + chr4_1:55636678-55636697 Msa0557320:CDS 30.0%
TTCAAATGCCATACATTCTA+TGG + chr4_1:55636717-55636736 Msa0557320:CDS 30.0%
CCAACAAAATGAATGAATGA+AGG - chr4_1:55636843-55636862 None:intergenic 30.0%
! CCTTCATTCATTCATTTTGT+TGG + chr4_1:55636840-55636859 Msa0557320:intron 30.0%
CAAAGATAAAATATCCAACC+TGG - chr4_1:55636998-55637017 None:intergenic 30.0%
GAATATGAAAAGTCCATTCA+AGG + chr4_1:55637045-55637064 Msa0557320:CDS 30.0%
!!! GTTTCTGTTGATAGTTTTGA+AGG + chr4_1:55637201-55637220 Msa0557320:intron 30.0%
TATCTATTACCCTCTTGAAA+AGG - chr4_1:55637239-55637258 None:intergenic 30.0%
TTGGAAAAGAAAATATGAGC+AGG + chr4_1:55637524-55637543 Msa0557320:CDS 30.0%
!! AATATGAGCAGGTTTTATCA+AGG + chr4_1:55637535-55637554 Msa0557320:CDS 30.0%
AATATGCAAAAGAAATGGGT+GGG - chr4_1:55637851-55637870 None:intergenic 30.0%
!! AACTCTGAAATTAGAGTTGA+AGG + chr4_1:55638006-55638025 Msa0557320:CDS 30.0%
TGTATCATAACTCCTTATCT+TGG - chr4_1:55638200-55638219 None:intergenic 30.0%
AATGAAATCTGAAAATGCCA+AGG + chr4_1:55638264-55638283 Msa0557320:CDS 30.0%
! CAAATCTTTTGAACTCAGAT+TGG - chr4_1:55638354-55638373 None:intergenic 30.0%
ATCTGAGTTCAAAAGATTTG+AGG + chr4_1:55638354-55638373 Msa0557320:CDS 30.0%
TGGATAAAGATAAAACACAC+AGG + chr4_1:55638677-55638696 Msa0557320:CDS 30.0%
! TCAGATTCTTGAACAACTTT+TGG + chr4_1:55638711-55638730 Msa0557320:CDS 30.0%
GTTTCGAATGAATGAAACAT+TGG + chr4_1:55638843-55638862 Msa0557320:CDS 30.0%
GAACTGACAAAACATAACTT+TGG + chr4_1:55639114-55639133 Msa0557320:CDS 30.0%
! CAAAACATAACTTTGGTGAT+CGG + chr4_1:55639121-55639140 Msa0557320:CDS 30.0%
ATTATCATATTGTAGGCCAT+AGG + chr4_1:55639400-55639419 Msa0557320:three_prime_UTR 30.0%
ATAATGTAGCTCGTCTAATA+TGG - chr4_1:55639522-55639541 None:intergenic 30.0%
AACTGAGAAGATGAAGAAGA+TGG - chr4_1:55630489-55630508 None:intergenic 35.0%
!! TCAAGATATAGCTTTTTCCC+TGG - chr4_1:55630647-55630666 None:intergenic 35.0%
CTAGAATTCGAAAAATCACC+TGG - chr4_1:55630671-55630690 None:intergenic 35.0%
TGGTGTCTTTCTTCGTAATT+AGG + chr4_1:55630723-55630742 Msa0557320:intron 35.0%
GGTGTCTTTCTTCGTAATTA+GGG + chr4_1:55630724-55630743 Msa0557320:intron 35.0%
!! TTCGTAATTAGGGTTTTGGT+TGG + chr4_1:55630734-55630753 Msa0557320:intron 35.0%
!!! TCGTAATTAGGGTTTTGGTT+GGG + chr4_1:55630735-55630754 Msa0557320:intron 35.0%
AAAGAGCAACTTTCTGATTG+CGG - chr4_1:55630911-55630930 None:intergenic 35.0%
AAACTTGTATGCTTGTGCAT+CGG + chr4_1:55630937-55630956 Msa0557320:intron 35.0%
!!! TGAAGTTCAGGGTTTTAGTT+TGG + chr4_1:55630963-55630982 Msa0557320:intron 35.0%
!!! AGGGTTTTAGTTTGGATTTC+CGG + chr4_1:55630971-55630990 Msa0557320:intron 35.0%
TGGATTTCCGGTGTATTTAT+TGG + chr4_1:55630983-55631002 Msa0557320:intron 35.0%
CTACAATGATCACACTGAAT+GGG - chr4_1:55631029-55631048 None:intergenic 35.0%
TCTACAATGATCACACTGAA+TGG - chr4_1:55631030-55631049 None:intergenic 35.0%
AAAAAACCACATACTCGTTG+TGG - chr4_1:55631256-55631275 None:intergenic 35.0%
AATTTAACTGCGAAGTTCAG+TGG + chr4_1:55631335-55631354 Msa0557320:intron 35.0%
TTACTGTAGCAAGTTACTAG+AGG + chr4_1:55631467-55631486 Msa0557320:intron 35.0%
AACAACAAAAAGCAGCAACA+AGG - chr4_1:55631682-55631701 None:intergenic 35.0%
CTTCTACTATTAGACAGTGA+AGG + chr4_1:55631858-55631877 Msa0557320:CDS 35.0%
TAGCATGTTCATTTACAACC+AGG + chr4_1:55632065-55632084 Msa0557320:CDS 35.0%
ATGTTCATTTACAACCAGGT+TGG + chr4_1:55632069-55632088 Msa0557320:intron 35.0%
TTTGAGTGACTAGAGAAAGA+CGG - chr4_1:55632301-55632320 None:intergenic 35.0%
CGTAAGAGCCAAACAAAAAT+TGG - chr4_1:55632392-55632411 None:intergenic 35.0%
CTGTCTTCCAATATTTGCAA+TGG - chr4_1:55632428-55632447 None:intergenic 35.0%
TGCAAATATTGGAAGACAGT+AGG + chr4_1:55632429-55632448 Msa0557320:intron 35.0%
!! AAGCAAGTTCTAGATAGTCT+CGG - chr4_1:55632589-55632608 None:intergenic 35.0%
! ACTATCTAGAACTTGCTTTG+CGG + chr4_1:55632591-55632610 Msa0557320:CDS 35.0%
TGTCATTCCTGAAGTAATTG+AGG + chr4_1:55632677-55632696 Msa0557320:intron 35.0%
TCAGAACATAGGAGTTAGAA+TGG + chr4_1:55632738-55632757 Msa0557320:intron 35.0%
ATTAAACTAGCAGGCAGAAT+GGG - chr4_1:55632863-55632882 None:intergenic 35.0%
AATTAAACTAGCAGGCAGAA+TGG - chr4_1:55632864-55632883 None:intergenic 35.0%
!!! TGTAGTGTCAGTTTTGGTTT+AGG - chr4_1:55632895-55632914 None:intergenic 35.0%
! AGTGGCAATTTTGCAGATTT+TGG - chr4_1:55632920-55632939 None:intergenic 35.0%
!! AAGAGTATTCCAGATTCAAG+TGG - chr4_1:55632938-55632957 None:intergenic 35.0%
CATTGTTTAAAGGTCGTACA+AGG - chr4_1:55633183-55633202 None:intergenic 35.0%
TTTGTCCGACTGCATATTTA+AGG - chr4_1:55633311-55633330 None:intergenic 35.0%
GAGTGCATCAAGATAAGATT+CGG - chr4_1:55633449-55633468 None:intergenic 35.0%
! TGATTTAAAACTAACCTGCC+AGG - chr4_1:55633503-55633522 None:intergenic 35.0%
!!! TCGTCACTGATTCACTTTTA+AGG - chr4_1:55633577-55633596 None:intergenic 35.0%
AAAAGTGAATCAGTGACGAA+TGG + chr4_1:55633578-55633597 Msa0557320:intron 35.0%
!!! GGATGTTATATTTTGACCGT+TGG + chr4_1:55633599-55633618 Msa0557320:intron 35.0%
AACAACGTTGAAGGAAATTG+TGG - chr4_1:55633735-55633754 None:intergenic 35.0%
! CTGCTATTTAACAACGTTGA+AGG - chr4_1:55633744-55633763 None:intergenic 35.0%
TCGTGGATCGTGAAAAATAT+CGG - chr4_1:55633884-55633903 None:intergenic 35.0%
TAAAGAACTTCCTCCAATTG+CGG - chr4_1:55633941-55633960 None:intergenic 35.0%
! ACATTTTTCGTTCCAAACTC+TGG - chr4_1:55634133-55634152 None:intergenic 35.0%
!! GGCTTTAGTTTGCTCAATAT+TGG + chr4_1:55634167-55634186 Msa0557320:intron 35.0%
!! TTTTGACTGCACTGTTTTGT+AGG + chr4_1:55634361-55634380 Msa0557320:intron 35.0%
ACAAGCAGTTCATAAGTCAA+TGG + chr4_1:55634406-55634425 Msa0557320:CDS 35.0%
ATTCATCAAAAAGGCTTTCG+AGG + chr4_1:55634496-55634515 Msa0557320:CDS 35.0%
!! CTTTTTGTTTAGACTGCAAG+GGG + chr4_1:55634640-55634659 Msa0557320:intron 35.0%
GAGCAAAAAATAAGCGTGTT+TGG + chr4_1:55634781-55634800 Msa0557320:intron 35.0%
!! TCCCCAATTTCAGGTTTAAA+AGG - chr4_1:55634917-55634936 None:intergenic 35.0%
TAATCAAACCTGAAACCTTG+AGG - chr4_1:55635065-55635084 None:intergenic 35.0%
!! GTTTCAGGTTTGATTATCCT+CGG + chr4_1:55635069-55635088 Msa0557320:intron 35.0%
!! ATTGTCTATCAGGTTGAAAG+TGG - chr4_1:55635147-55635166 None:intergenic 35.0%
AGATCATTATGGAATGGCTA+CGG - chr4_1:55635267-55635286 None:intergenic 35.0%
CTTGACAAAGTCATTCAGTT+GGG - chr4_1:55635345-55635364 None:intergenic 35.0%
ACTTGACAAAGTCATTCAGT+TGG - chr4_1:55635346-55635365 None:intergenic 35.0%
! ATGACTTTGTCAAGTTTGCT+TGG + chr4_1:55635351-55635370 Msa0557320:intron 35.0%
! CGATGTTTTGTCACTATGAT+TGG + chr4_1:55635382-55635401 Msa0557320:intron 35.0%
! TGTTTTGTCACTATGATTGG+TGG + chr4_1:55635385-55635404 Msa0557320:intron 35.0%
AATTCTCTCAACAGAACTAG+AGG - chr4_1:55635614-55635633 None:intergenic 35.0%
AACAGACATGTAAACTACTC+AGG + chr4_1:55635654-55635673 Msa0557320:intron 35.0%
ACAGACATGTAAACTACTCA+GGG + chr4_1:55635655-55635674 Msa0557320:intron 35.0%
AGGGACATCTTGAATTTCTT+TGG + chr4_1:55635674-55635693 Msa0557320:intron 35.0%
!! TTATAGTGGATAGCTGATAG+CGG + chr4_1:55635727-55635746 Msa0557320:intron 35.0%
CTGATTGAATTTGCAGTGTT+TGG + chr4_1:55635759-55635778 Msa0557320:intron 35.0%
! TTTTGCATAAGGGGTCTATT+TGG - chr4_1:55636060-55636079 None:intergenic 35.0%
TGGAGTGATTATTATGGCAA+AGG + chr4_1:55636099-55636118 Msa0557320:intron 35.0%
TTATGGCAAAGGATATAAGC+AGG + chr4_1:55636110-55636129 Msa0557320:intron 35.0%
TATGGCAAAGGATATAAGCA+GGG + chr4_1:55636111-55636130 Msa0557320:intron 35.0%
!! TGGTTTGCTGTTTGTAACTT+TGG + chr4_1:55636165-55636184 Msa0557320:intron 35.0%
! CTGTTTGTAACTTTGGAAGA+TGG + chr4_1:55636172-55636191 Msa0557320:intron 35.0%
! TGTAACTTTGGAAGATGGTA+TGG + chr4_1:55636177-55636196 Msa0557320:intron 35.0%
GAGACATAGGAGGTAAATTA+AGG + chr4_1:55636215-55636234 Msa0557320:intron 35.0%
ACAGAAGGACTATTGATGAA+TGG - chr4_1:55636260-55636279 None:intergenic 35.0%
ATCAATAGTCCTTCTGTTTC+TGG + chr4_1:55636263-55636282 Msa0557320:intron 35.0%
TTTGGAGGTTATGATGTGAA+TGG + chr4_1:55636290-55636309 Msa0557320:intron 35.0%
TAATTCTGGCAAACATCATG+TGG + chr4_1:55636388-55636407 Msa0557320:intron 35.0%
!! TGGCTTTAACAAACCTAACT+TGG + chr4_1:55636447-55636466 Msa0557320:intron 35.0%
! CCTCTTTTCCATAGAATGTA+TGG - chr4_1:55636728-55636747 None:intergenic 35.0%
CCATACATTCTATGGAAAAG+AGG + chr4_1:55636725-55636744 Msa0557320:CDS 35.0%
TTGTAATGCTTCTGATGCTA+GGG + chr4_1:55636759-55636778 Msa0557320:CDS 35.0%
!! TAGGGTTGATAATGTTGCAA+AGG + chr4_1:55636777-55636796 Msa0557320:CDS 35.0%
! TATCTTGTTTGAAACCCGAA+AGG + chr4_1:55636874-55636893 Msa0557320:intron 35.0%
! ATCTTGTTTGAAACCCGAAA+GGG + chr4_1:55636875-55636894 Msa0557320:intron 35.0%
!!! TCTTGTTTTCTTTCCCCTTT+CGG - chr4_1:55636892-55636911 None:intergenic 35.0%
! GGATATTTTATCTTTGACGC+AGG + chr4_1:55637002-55637021 Msa0557320:intron 35.0%
!!! GCAAGTTTTTTCCATTTTCC+AGG - chr4_1:55637072-55637091 None:intergenic 35.0%
!!! TTTTTTGTGGTTGAGAGTAG+TGG + chr4_1:55637140-55637159 Msa0557320:intron 35.0%
! TAGCTTGCAATTCAGTAATG+CGG - chr4_1:55637431-55637450 None:intergenic 35.0%
CAATATGCAAAAGAAATGGG+TGG - chr4_1:55637852-55637871 None:intergenic 35.0%
CCAAGTTTGCAAGGAATTAT+GGG - chr4_1:55637903-55637922 None:intergenic 35.0%
CCATAATTCCTTGCAAACTT+GGG + chr4_1:55637901-55637920 Msa0557320:intron 35.0%
! GACTTGTTTGCTAATTATGC+AGG + chr4_1:55637928-55637947 Msa0557320:intron 35.0%
! TGTTTATTTCGGTCTTTTCG+AGG + chr4_1:55638140-55638159 Msa0557320:intron 35.0%
AATATTGTGCTTGTACTTGC+AGG + chr4_1:55638165-55638184 Msa0557320:intron 35.0%
ATACAGAAATATCGTCACTG+AGG + chr4_1:55638215-55638234 Msa0557320:CDS 35.0%
TGAGTTCAAAAGATTTGAGG+AGG + chr4_1:55638357-55638376 Msa0557320:CDS 35.0%
! GAGAATTGAAACTCTAGGAA+GGG + chr4_1:55638534-55638553 Msa0557320:CDS 35.0%
! TTGATGTAGGGAGTCAATTT+TGG - chr4_1:55638812-55638831 None:intergenic 35.0%
! ATGCAAGCCCTAGATTTTTA+AGG + chr4_1:55638944-55638963 Msa0557320:CDS 35.0%
! TGCAAGCCCTAGATTTTTAA+GGG + chr4_1:55638945-55638964 Msa0557320:CDS 35.0%
TAGCTCCCCTTAAAAATCTA+GGG - chr4_1:55638954-55638973 None:intergenic 35.0%
TTAGCTCCCCTTAAAAATCT+AGG - chr4_1:55638955-55638974 None:intergenic 35.0%
CTTTGTATGATCCTCTTCAT+TGG - chr4_1:55639070-55639089 None:intergenic 35.0%
GCAACAAGATCTTTCTTCAT+GGG - chr4_1:55639165-55639184 None:intergenic 35.0%
AGCAACAAGATCTTTCTTCA+TGG - chr4_1:55639166-55639185 None:intergenic 35.0%
ATGAGGAATGTATTCTTCAG+AGG + chr4_1:55639190-55639209 Msa0557320:CDS 35.0%
GTATTCTTCAGAGGTGATAA+CGG + chr4_1:55639199-55639218 Msa0557320:exon 35.0%
TATTCTTCAGAGGTGATAAC+GGG + chr4_1:55639200-55639219 Msa0557320:exon 35.0%
!! TTCTGTGTGGTTTTGCATAT+TGG + chr4_1:55639348-55639367 Msa0557320:three_prime_UTR 35.0%
!! TTTTGATGGCACGGTTTTAT+TGG + chr4_1:55639426-55639445 Msa0557320:three_prime_UTR 35.0%
TCTTCATCTTCTCAGTTCAC+CGG + chr4_1:55630492-55630511 Msa0557320:CDS 40.0%
CTTGTCTACTGCGATGAAAA+GGG + chr4_1:55630534-55630553 Msa0557320:CDS 40.0%
TGAAAAGGGAAAGTTCCGTA+TGG + chr4_1:55630548-55630567 Msa0557320:CDS 40.0%
!!! TAGGGTTTTGGTTGGGATTA+TGG + chr4_1:55630742-55630761 Msa0557320:intron 40.0%
GCAATCAGAAAGTTGCTCTT+TGG + chr4_1:55630910-55630929 Msa0557320:intron 40.0%
!!! TGCATCGGTTTTGAAGTTCA+GGG + chr4_1:55630952-55630971 Msa0557320:intron 40.0%
GAAGTTCAGTGGCTAATTTC+CGG + chr4_1:55631346-55631365 Msa0557320:intron 40.0%
AAGTTCAGTGGCTAATTTCC+GGG + chr4_1:55631347-55631366 Msa0557320:intron 40.0%
!!! TTTTTTGCACTGCAGCTCTT+AGG + chr4_1:55631726-55631745 Msa0557320:intron 40.0%
AACAGCCAGTGAGAATATCT+GGG - chr4_1:55632037-55632056 None:intergenic 40.0%
!! ATATTCCATGACCGGTTTGT+GGG + chr4_1:55632152-55632171 Msa0557320:intron 40.0%
GTTTCATTTACTCAGATGGG+TGG + chr4_1:55632254-55632273 Msa0557320:intron 40.0%
CATATTCGTGTTAGAGCTTC+TGG + chr4_1:55632329-55632348 Msa0557320:CDS 40.0%
AAACTGTCCTATTTCAGACG+CGG - chr4_1:55632366-55632385 None:intergenic 40.0%
! TTGTGAATAATCTTGGTGGC+AGG + chr4_1:55632520-55632539 Msa0557320:intron 40.0%
!! AGCAAGTTCTAGATAGTCTC+GGG - chr4_1:55632588-55632607 None:intergenic 40.0%
CGATGTAGCTGCTAAAAATG+AGG + chr4_1:55632634-55632653 Msa0557320:CDS 40.0%
CATAGGAGTTAGAATGGCAT+AGG + chr4_1:55632744-55632763 Msa0557320:intron 40.0%
ACATATTTAGCAGACGACCT+AGG + chr4_1:55632776-55632795 Msa0557320:intron 40.0%
GGATGCGAATAATAATCCCT+CGG + chr4_1:55632812-55632831 Msa0557320:intron 40.0%
CGAATAATAATCCCTCGGAT+AGG + chr4_1:55632817-55632836 Msa0557320:intron 40.0%
! TTGGTGTGTAGTGTCAGTTT+TGG - chr4_1:55632901-55632920 None:intergenic 40.0%
! GCAAAATTGCCACTTGAATC+TGG + chr4_1:55632926-55632945 Msa0557320:intron 40.0%
AGAAAGTTAGCAACTCCAGA+GGG - chr4_1:55633095-55633114 None:intergenic 40.0%
TGAAAATGATCTACAGCGAC+TGG + chr4_1:55633201-55633220 Msa0557320:CDS 40.0%
! CTGCAAAAGAGTATGGTACA+TGG - chr4_1:55633257-55633276 None:intergenic 40.0%
! ATAGTTGCTCCAACTTGCTT+TGG - chr4_1:55633397-55633416 None:intergenic 40.0%
! ATGACAGGTCCTGTATTGAT+TGG + chr4_1:55633418-55633437 Msa0557320:CDS 40.0%
TCGGTGATACCAATCAATAC+AGG - chr4_1:55633430-55633449 None:intergenic 40.0%
TATCTTGATGCACTCAACCA+TGG + chr4_1:55633454-55633473 Msa0557320:CDS 40.0%
! TTTAAAACTAACCTGCCAGG+AGG - chr4_1:55633500-55633519 None:intergenic 40.0%
!! TACGAAGCACTGTCAAATTG+TGG + chr4_1:55633819-55633838 Msa0557320:intron 40.0%
CGGACTAAATATCCACATCA+AGG - chr4_1:55633921-55633940 None:intergenic 40.0%
GTGGATATTTAGTCCGCAAT+TGG + chr4_1:55633925-55633944 Msa0557320:intron 40.0%
GATATTTAGTCCGCAATTGG+AGG + chr4_1:55633928-55633947 Msa0557320:intron 40.0%
AAGCCAAATCATAAGCCCTA+CGG - chr4_1:55634235-55634254 None:intergenic 40.0%
GATAGATTACTCACTTCCTC+AGG - chr4_1:55634296-55634315 None:intergenic 40.0%
!! TGTTTTGTAGGTCGCTTTGA+TGG + chr4_1:55634373-55634392 Msa0557320:intron 40.0%
! GCTTTTAATGCTAGTGCTGT+AGG + chr4_1:55634431-55634450 Msa0557320:CDS 40.0%
GCAGCTAGGAAGAAATATGA+AGG + chr4_1:55634461-55634480 Msa0557320:CDS 40.0%
TGAGAGATGGAAGTTTGACA+GGG - chr4_1:55634978-55634997 None:intergenic 40.0%
ATGAGAGATGGAAGTTTGAC+AGG - chr4_1:55634979-55634998 None:intergenic 40.0%
CGTCTATCTATCATGAGAGA+TGG - chr4_1:55634991-55635010 None:intergenic 40.0%
!! ATTATCCTCGGTGCCAATTT+GGG + chr4_1:55635081-55635100 Msa0557320:intron 40.0%
CTAAATTAGCCCACCCAAAT+TGG - chr4_1:55635097-55635116 None:intergenic 40.0%
!! TTTCTGTCGCTTGTTATCAG+CGG - chr4_1:55635192-55635211 None:intergenic 40.0%
GGGACTCAAAAATGCAATTC+AGG - chr4_1:55635325-55635344 None:intergenic 40.0%
! TTTTCTCTGATCACTCAGAG+TGG + chr4_1:55635432-55635451 Msa0557320:intron 40.0%
TTTCTCTGATCACTCAGAGT+GGG + chr4_1:55635433-55635452 Msa0557320:intron 40.0%
TTGACTAAAAAGGTCCCGTT+TGG - chr4_1:55635986-55636005 None:intergenic 40.0%
ATGGCAAAGGATATAAGCAG+GGG + chr4_1:55636112-55636131 Msa0557320:intron 40.0%
CATTTCGAATGAGACATAGG+AGG + chr4_1:55636205-55636224 Msa0557320:intron 40.0%
CCAAATATGCCAGAAACAGA+AGG - chr4_1:55636275-55636294 None:intergenic 40.0%
!! CCTTCTGTTTCTGGCATATT+TGG + chr4_1:55636272-55636291 Msa0557320:intron 40.0%
!! TCTGTTTCTGGCATATTTGG+AGG + chr4_1:55636275-55636294 Msa0557320:intron 40.0%
GTAAGCACAAAAGCCAAGTT+AGG - chr4_1:55636463-55636482 None:intergenic 40.0%
CACACACCCTGATTATCATT+TGG - chr4_1:55636515-55636534 None:intergenic 40.0%
CAAAAGGAATGCATTCATGG+AGG + chr4_1:55636681-55636700 Msa0557320:CDS 40.0%
ATTCTATGGAAAAGAGGCTG+AGG + chr4_1:55636731-55636750 Msa0557320:CDS 40.0%
TTCTATGGAAAAGAGGCTGA+GGG + chr4_1:55636732-55636751 Msa0557320:CDS 40.0%
CTTGTAATGCTTCTGATGCT+AGG + chr4_1:55636758-55636777 Msa0557320:CDS 40.0%
! TCTTGTTTGAAACCCGAAAG+GGG + chr4_1:55636876-55636895 Msa0557320:intron 40.0%
!! CTTGTTTTCTTTCCCCTTTC+GGG - chr4_1:55636891-55636910 None:intergenic 40.0%
TCTTGAAAAGGTCAAGCACA+GGG - chr4_1:55637227-55637246 None:intergenic 40.0%
!! TGTGCTTGACCTTTTCAAGA+GGG + chr4_1:55637227-55637246 Msa0557320:CDS 40.0%
TTCATTCAACCGACGTTGTA+AGG - chr4_1:55637289-55637308 None:intergenic 40.0%
CTCATATCGCTTGATGTACT+CGG - chr4_1:55637364-55637383 None:intergenic 40.0%
AACATTGGACTCTAGTAAGC+AGG + chr4_1:55637491-55637510 Msa0557320:CDS 40.0%
TTTATCAAGGCAGAAAGCTG+AGG + chr4_1:55637548-55637567 Msa0557320:CDS 40.0%
!! AGCAAAATCTGCTCTAGAGA+AGG + chr4_1:55637716-55637735 Msa0557320:CDS 40.0%
AAACAAGCAGACACAGTTGA+GGG + chr4_1:55637761-55637780 Msa0557320:CDS 40.0%
GTCTTAAGAGAAGAGTTCTC+TGG + chr4_1:55637789-55637808 Msa0557320:CDS 40.0%
!! AGAAGAGTTCTCTGGAACTT+TGG + chr4_1:55637797-55637816 Msa0557320:CDS 40.0%
AAAAGAAATGGGTGGGTATC+AGG - chr4_1:55637844-55637863 None:intergenic 40.0%
CCCATAATTCCTTGCAAACT+TGG + chr4_1:55637900-55637919 Msa0557320:intron 40.0%
CCCAAGTTTGCAAGGAATTA+TGG - chr4_1:55637904-55637923 None:intergenic 40.0%
!! GCTTCTTAGAAGTGTTGTCT+CGG + chr4_1:55638040-55638059 Msa0557320:intron 40.0%
TTGTCTCGGCACTATTATGA+AGG + chr4_1:55638054-55638073 Msa0557320:intron 40.0%
TGTCTCGGCACTATTATGAA+GGG + chr4_1:55638055-55638074 Msa0557320:intron 40.0%
GGAAGCAATAGTATATCAGC+AGG + chr4_1:55638303-55638322 Msa0557320:CDS 40.0%
ATTGGTACTTCTGCTCAAGA+TGG - chr4_1:55638336-55638355 None:intergenic 40.0%
GATTTGAGGAGGTTCAAGAA+AGG + chr4_1:55638368-55638387 Msa0557320:CDS 40.0%
TGCTGAAAAAGAAGCTGCAA+GGG + chr4_1:55638399-55638418 Msa0557320:CDS 40.0%
GAGAGGAGAATTGAAACTCT+AGG + chr4_1:55638529-55638548 Msa0557320:CDS 40.0%
! GGAGAATTGAAACTCTAGGA+AGG + chr4_1:55638533-55638552 Msa0557320:CDS 40.0%
AGGAAGGGAGAAAGATAATC+TGG + chr4_1:55638549-55638568 Msa0557320:CDS 40.0%
AGGGAGAAAGATAATCTGGA+AGG + chr4_1:55638553-55638572 Msa0557320:CDS 40.0%
!! GAAGGATTTAGAAGCACTTC+TGG + chr4_1:55638657-55638676 Msa0557320:CDS 40.0%
CACATACACAGGCAAATAAC+CGG + chr4_1:55638749-55638768 Msa0557320:CDS 40.0%
ACATACACAGGCAAATAACC+GGG + chr4_1:55638750-55638769 Msa0557320:CDS 40.0%
CTTAGTCAGCTCTTGATGTA+GGG - chr4_1:55638824-55638843 None:intergenic 40.0%
ACTTAGTCAGCTCTTGATGT+AGG - chr4_1:55638825-55638844 None:intergenic 40.0%
AGTAAGCTAAAGACAACCGA+TGG + chr4_1:55638868-55638887 Msa0557320:CDS 40.0%
TTGAGGGTAGAGAATGACAA+TGG + chr4_1:55638898-55638917 Msa0557320:CDS 40.0%
!! TGCTGATTCTGTACAAGACA+TGG + chr4_1:55638921-55638940 Msa0557320:CDS 40.0%
!! GCAAGCCCTAGATTTTTAAG+GGG + chr4_1:55638946-55638965 Msa0557320:CDS 40.0%
TAGATTGAACCACCATCTTC+TGG - chr4_1:55639015-55639034 None:intergenic 40.0%
! AGATGGTGGTTCAATCTATG+AGG + chr4_1:55639017-55639036 Msa0557320:CDS 40.0%
! GATGGTGGTTCAATCTATGA+GGG + chr4_1:55639018-55639037 Msa0557320:CDS 40.0%
AGATCTTGTTGCTCTGTATG+AGG + chr4_1:55639173-55639192 Msa0557320:CDS 40.0%
! ATTCTTCAGAGGTGATAACG+GGG + chr4_1:55639201-55639220 Msa0557320:exon 40.0%
!!! TGATAACGGGGGTTTTGAAA+AGG + chr4_1:55639213-55639232 Msa0557320:exon 40.0%
!! TAGGCCATAGGAAGTTTTGA+TGG + chr4_1:55639412-55639431 Msa0557320:three_prime_UTR 40.0%
!! CATAGGAAGTTTTGATGGCA+CGG + chr4_1:55639417-55639436 Msa0557320:three_prime_UTR 40.0%
TAGACAAGGCGAATAGCTCT+GGG - chr4_1:55630522-55630541 None:intergenic 45.0%
! CCTTTTCATCGCAGTAGACA+AGG - chr4_1:55630536-55630555 None:intergenic 45.0%
CCTTGTCTACTGCGATGAAA+AGG + chr4_1:55630533-55630552 Msa0557320:CDS 45.0%
! GACGAGTTGAAGAATAGCGA+CGG - chr4_1:55630583-55630602 None:intergenic 45.0%
CGCTATTCTTCAACTCGTCA+AGG + chr4_1:55630584-55630603 Msa0557320:CDS 45.0%
CAAACAGAAACGACACCGAT+GGG - chr4_1:55630612-55630631 None:intergenic 45.0%
ACAAACAGAAACGACACCGA+TGG - chr4_1:55630613-55630632 None:intergenic 45.0%
!! ATCGGTGTCGTTTCTGTTTG+TGG + chr4_1:55630612-55630631 Msa0557320:CDS 45.0%
!!! GTGCATCGGTTTTGAAGTTC+AGG + chr4_1:55630951-55630970 Msa0557320:intron 45.0%
GTTTGACCACAACGAGTATG+TGG + chr4_1:55631247-55631266 Msa0557320:intron 45.0%
GGCTAATTTCCGGGATAAGT+TGG + chr4_1:55631356-55631375 Msa0557320:intron 45.0%
TGTAGCAAGTTACTAGAGGC+AGG + chr4_1:55631471-55631490 Msa0557320:intron 45.0%
ATCCAAAGCCCTTTGGTACA+GGG - chr4_1:55631789-55631808 None:intergenic 45.0%
GAACAGCCAGTGAGAATATC+TGG - chr4_1:55632038-55632057 None:intergenic 45.0%
!! GATATTCCATGACCGGTTTG+TGG + chr4_1:55632151-55632170 Msa0557320:intron 45.0%
TCAACAACAGACCCACAAAC+CGG - chr4_1:55632166-55632185 None:intergenic 45.0%
TCAGATGGGTGGTATAGATG+AGG + chr4_1:55632265-55632284 Msa0557320:intron 45.0%
! AAGACTTCCGCGTCTGAAAT+AGG + chr4_1:55632356-55632375 Msa0557320:CDS 45.0%
!! TTTGTTTGGCTCTTACGGGT+AGG + chr4_1:55632395-55632414 Msa0557320:intron 45.0%
! TTGGTGGCAGGACTTCTATT+TGG + chr4_1:55632532-55632551 Msa0557320:intron 45.0%
!! GCAAGTTCTAGATAGTCTCG+GGG - chr4_1:55632587-55632606 None:intergenic 45.0%
TTGCTTTGCGGTCTGTTCAA+GGG + chr4_1:55632603-55632622 Msa0557320:CDS 45.0%
AGTTAGAATGGCATAGGCAC+AGG + chr4_1:55632750-55632769 Msa0557320:intron 45.0%
TGTGAAGCTTATTTCCCCTC+TGG + chr4_1:55633077-55633096 Msa0557320:intron 45.0%
GAAAGTTAGCAACTCCAGAG+GGG - chr4_1:55633094-55633113 None:intergenic 45.0%
CAGAAAGTTAGCAACTCCAG+AGG - chr4_1:55633096-55633115 None:intergenic 45.0%
ATCTGGGAATAGAGCACGAA+TGG - chr4_1:55633146-55633165 None:intergenic 45.0%
TTCGTGCTCTATTCCCAGAT+AGG + chr4_1:55633146-55633165 Msa0557320:CDS 45.0%
TCGTGCTCTATTCCCAGATA+GGG + chr4_1:55633147-55633166 Msa0557320:CDS 45.0%
AGAACAAGGCCAAAGCAAGT+TGG + chr4_1:55633385-55633404 Msa0557320:CDS 45.0%
GTTGGAGCAACTATGATGAC+AGG + chr4_1:55633403-55633422 Msa0557320:CDS 45.0%
GGAGGAAGAAATAGTAGGCA+CGG - chr4_1:55633482-55633501 None:intergenic 45.0%
! TGCCTACTATTTCTTCCTCC+TGG + chr4_1:55633482-55633501 Msa0557320:CDS 45.0%
TGCCAGGAGGAAGAAATAGT+AGG - chr4_1:55633487-55633506 None:intergenic 45.0%
! TACTATTTCTTCCTCCTGGC+AGG + chr4_1:55633486-55633505 Msa0557320:CDS 45.0%
AGGAAACCAGTTGTCAATCG+TGG - chr4_1:55633901-55633920 None:intergenic 45.0%
! GACAACTGGTTTCCTTGATG+TGG + chr4_1:55633906-55633925 Msa0557320:intron 45.0%
AGATTACTCACTTCCTCAGG+TGG - chr4_1:55634293-55634312 None:intergenic 45.0%
AATGCTAGTGCTGTAGGAGT+TGG + chr4_1:55634437-55634456 Msa0557320:CDS 45.0%
TTGTTTAGACTGCAAGGGGT+TGG + chr4_1:55634644-55634663 Msa0557320:intron 45.0%
GAGAGATGGAAGTTTGACAG+GGG - chr4_1:55634977-55634996 None:intergenic 45.0%
CATGATAGATAGACGCCACT+TGG + chr4_1:55634996-55635015 Msa0557320:intron 45.0%
TCAAACCTGAAACCTTGAGG+AGG - chr4_1:55635062-55635081 None:intergenic 45.0%
!! GATTATCCTCGGTGCCAATT+TGG + chr4_1:55635080-55635099 Msa0557320:intron 45.0%
GAATGGCTACGGAAGGAAAT+AGG - chr4_1:55635256-55635275 None:intergenic 45.0%
CATTATGGAATGGCTACGGA+AGG - chr4_1:55635263-55635282 None:intergenic 45.0%
TTCTCTGATCACTCAGAGTG+GGG + chr4_1:55635434-55635453 Msa0557320:intron 45.0%
TGGCAAAGGATATAAGCAGG+GGG + chr4_1:55636113-55636132 Msa0557320:intron 45.0%
! TATAAGCAGGGGGGTTTTAC+TGG + chr4_1:55636123-55636142 Msa0557320:intron 45.0%
ACCTGGTCGTCAATTCAACA+AGG - chr4_1:55636981-55637000 None:intergenic 45.0%
TGTTGAATTGACGACCAGGT+TGG + chr4_1:55636981-55637000 Msa0557320:intron 45.0%
GAAAAGTCCATTCAAGGTCC+TGG + chr4_1:55637051-55637070 Msa0557320:CDS 45.0%
! CCATTTTCCAGGACCTTGAA+TGG - chr4_1:55637061-55637080 None:intergenic 45.0%
CCATTCAAGGTCCTGGAAAA+TGG + chr4_1:55637058-55637077 Msa0557320:CDS 45.0%
TTGCTGTCTTCTTGCAGCAA+AGG + chr4_1:55637088-55637107 Msa0557320:CDS 45.0%
CTCTTGAAAAGGTCAAGCAC+AGG - chr4_1:55637228-55637247 None:intergenic 45.0%
!! CTGTGCTTGACCTTTTCAAG+AGG + chr4_1:55637226-55637245 Msa0557320:CDS 45.0%
GTTCTCTTGCCTTACAACGT+CGG + chr4_1:55637277-55637296 Msa0557320:CDS 45.0%
AGATGACCTTACTGACCAAG+CGG + chr4_1:55637313-55637332 Msa0557320:CDS 45.0%
CGAGTACATCAAGCGATATG+AGG + chr4_1:55637362-55637381 Msa0557320:CDS 45.0%
CTCTAGTAAGCAGGAATCCA+TGG + chr4_1:55637500-55637519 Msa0557320:CDS 45.0%
GTAAGCAGGAATCCATGGAT+TGG + chr4_1:55637505-55637524 Msa0557320:CDS 45.0%
AGAGAAGGCAGCAATTGTTC+AGG + chr4_1:55637731-55637750 Msa0557320:CDS 45.0%
CAAACAAGCAGACACAGTTG+AGG + chr4_1:55637760-55637779 Msa0557320:CDS 45.0%
AGTCAGAACCCAAGTTTGCA+AGG - chr4_1:55637912-55637931 None:intergenic 45.0%
TGCTTCCCTCTCATATGACT+GGG - chr4_1:55638290-55638309 None:intergenic 45.0%
TTGCTTCCCTCTCATATGAC+TGG - chr4_1:55638291-55638310 None:intergenic 45.0%
CTGCTGAAAAAGAAGCTGCA+AGG + chr4_1:55638398-55638417 Msa0557320:CDS 45.0%
AAAGACTGGCACAGATTGAG+AGG + chr4_1:55638503-55638522 Msa0557320:CDS 45.0%
AAGACTGGCACAGATTGAGA+GGG + chr4_1:55638504-55638523 Msa0557320:CDS 45.0%
AGGTGAATTGCAGAGAGCAA+CGG + chr4_1:55638573-55638592 Msa0557320:CDS 45.0%
! GAAGGTGCAACAAAGAGAGA+AGG + chr4_1:55638639-55638658 Msa0557320:CDS 45.0%
!! ACTTTTGGAAACAGAGCGTG+AGG + chr4_1:55638726-55638745 Msa0557320:CDS 45.0%
AACCGATGGTAAGCGATTGA+GGG + chr4_1:55638882-55638901 Msa0557320:CDS 45.0%
TACCCTCAATCGCTTACCAT+CGG - chr4_1:55638887-55638906 None:intergenic 45.0%
! TCTTCTGGCTGTGTGTACTT+AGG - chr4_1:55639000-55639019 None:intergenic 45.0%
AAGTACACACAGCCAGAAGA+TGG + chr4_1:55639000-55639019 Msa0557320:CDS 45.0%
! TTCAATCTATGAGGGTGCAG+AGG + chr4_1:55639026-55639045 Msa0557320:CDS 45.0%
TAGTCAGCAAGCCAATGAAG+AGG + chr4_1:55639056-55639075 Msa0557320:CDS 45.0%
TCAGTTCTCGCTTAAGCTTC+GGG - chr4_1:55639101-55639120 None:intergenic 45.0%
GTCAGTTCTCGCTTAAGCTT+CGG - chr4_1:55639102-55639121 None:intergenic 45.0%
!! TTCTTCAGAGGTGATAACGG+GGG + chr4_1:55639202-55639221 Msa0557320:exon 45.0%
CGGAGTGATAAAGAAGCAAC+AGG - chr4_1:55639249-55639268 None:intergenic 45.0%
GCTTCTTTATCACTCCGTCT+AGG + chr4_1:55639252-55639271 Msa0557320:three_prime_UTR 45.0%
GAGATCTAGACAGACCTAGA+CGG - chr4_1:55639269-55639288 None:intergenic 45.0%
TCTAGATCTCATTGATGCCG+TGG + chr4_1:55639279-55639298 Msa0557320:three_prime_UTR 45.0%
ATGCCGTGGTTACTGACATA+CGG + chr4_1:55639293-55639312 Msa0557320:three_prime_UTR 45.0%
AGTCCGTATGTCAGTAACCA+CGG - chr4_1:55639299-55639318 None:intergenic 45.0%
CGTGCCATCAAAACTTCCTA+TGG - chr4_1:55639419-55639438 None:intergenic 45.0%
!! ATAATAAATGTTAAAATATT+AGG + chr4_1:55632703-55632722 Msa0557320:intron 5.0%
!!! ATATTTTTTTTTTTTAATCA+AGG + chr4_1:55635844-55635863 Msa0557320:intron 5.0%
!! AGAATTAATAATAAAAAAAA+AGG - chr4_1:55636375-55636394 None:intergenic 5.0%
!!! TTTTTTTTTATTATTAATTC+TGG + chr4_1:55636374-55636393 Msa0557320:intron 5.0%
GTAGACAAGGCGAATAGCTC+TGG - chr4_1:55630523-55630542 None:intergenic 50.0%
TGAAGAATAGCGACGGCTTC+TGG - chr4_1:55630576-55630595 None:intergenic 50.0%
CAACTCGTCAAGGAACCCAT+CGG + chr4_1:55630594-55630613 Msa0557320:CDS 50.0%
! TAGGCCTTATCCCACTAAGC+GGG - chr4_1:55631612-55631631 None:intergenic 50.0%
! CTAGGCCTTATCCCACTAAG+CGG - chr4_1:55631613-55631632 None:intergenic 50.0%
ACACATCGACCCTGTACCAA+AGG + chr4_1:55631777-55631796 Msa0557320:CDS 50.0%
CACATCGACCCTGTACCAAA+GGG + chr4_1:55631778-55631797 Msa0557320:CDS 50.0%
CATCCAAAGCCCTTTGGTAC+AGG - chr4_1:55631790-55631809 None:intergenic 50.0%
!! GTACCAAAGGGCTTTGGATG+TGG + chr4_1:55631790-55631809 Msa0557320:CDS 50.0%
TCAAGTGCGGTCCTCTTCAA+AGG - chr4_1:55631822-55631841 None:intergenic 50.0%
TTGAAGAGGACCGCACTTGA+TGG + chr4_1:55631822-55631841 Msa0557320:CDS 50.0%
GTACTCCGTTCCATCAAGTG+CGG - chr4_1:55631835-55631854 None:intergenic 50.0%
CAGCACCCAGATATTCTCAC+TGG + chr4_1:55632029-55632048 Msa0557320:CDS 50.0%
CTTGATAGGATGTGCCAACC+TGG - chr4_1:55632086-55632105 None:intergenic 50.0%
CTTGCTTTGCGGTCTGTTCA+AGG + chr4_1:55632602-55632621 Msa0557320:CDS 50.0%
! GGGTGAAGCATTCCCTATCT+GGG - chr4_1:55633162-55633181 None:intergenic 50.0%
! AGGGTGAAGCATTCCCTATC+TGG - chr4_1:55633163-55633182 None:intergenic 50.0%
AAATAGTAGGCACGGCACCA+TGG - chr4_1:55633474-55633493 None:intergenic 50.0%
CACGATCCACGATTGACAAC+TGG + chr4_1:55633892-55633911 Msa0557320:intron 50.0%
!! TTGAAGAAGCAGAGTGCCGT+AGG + chr4_1:55634216-55634235 Msa0557320:CDS 50.0%
!! TGAAGAAGCAGAGTGCCGTA+GGG + chr4_1:55634217-55634236 Msa0557320:CDS 50.0%
GTGCCGTAGGGCTTATGATT+TGG + chr4_1:55634229-55634248 Msa0557320:CDS 50.0%
TAGATAGACGCCACTTGGCT+TGG + chr4_1:55635001-55635020 Msa0557320:intron 50.0%
ACCCAGTAAAACTGCTGGCA+GGG - chr4_1:55635220-55635239 None:intergenic 50.0%
CTCTCACCCAGTAAAACTGC+TGG - chr4_1:55635225-55635244 None:intergenic 50.0%
! CAGCAGTTTTACTGGGTGAG+AGG + chr4_1:55635223-55635242 Msa0557320:intron 50.0%
TCTCTGATCACTCAGAGTGG+GGG + chr4_1:55635435-55635454 Msa0557320:intron 50.0%
GCAATAAGCTCGTGGCTAAG+TGG + chr4_1:55635954-55635973 Msa0557320:intron 50.0%
ATAAGCTCGTGGCTAAGTGG+CGG + chr4_1:55635957-55635976 Msa0557320:intron 50.0%
GCTAAGTGGCGGTTACCAAA+CGG + chr4_1:55635968-55635987 Msa0557320:intron 50.0%
CTAAGTGGCGGTTACCAAAC+GGG + chr4_1:55635969-55635988 Msa0557320:intron 50.0%
GGCAAAGGATATAAGCAGGG+GGG + chr4_1:55636114-55636133 Msa0557320:intron 50.0%
!! TGCCACTTTCTTGGAGTGTG+AGG + chr4_1:55636605-55636624 Msa0557320:intron 50.0%
AGCCTCACACTCCAAGAAAG+TGG - chr4_1:55636610-55636629 None:intergenic 50.0%
! GCCTTGTTGAATTGACGACC+AGG + chr4_1:55636977-55636996 Msa0557320:intron 50.0%
! GTGGTTGAGAGTAGTGGAAC+CGG + chr4_1:55637146-55637165 Msa0557320:intron 50.0%
! CTCGGACTTTTCACCTTCAC+TGG - chr4_1:55637346-55637365 None:intergenic 50.0%
TCAAGGCAGAAAGCTGAGGA+AGG + chr4_1:55637552-55637571 Msa0557320:CDS 50.0%
TGCACTACTGCGGGATTTGA+GGG - chr4_1:55637601-55637620 None:intergenic 50.0%
ACAAGCTCAGTCTGCTCAAG+AGG + chr4_1:55637650-55637669 Msa0557320:CDS 50.0%
AGGAGGCTGATGAGTGGAAA+CGG + chr4_1:55637670-55637689 Msa0557320:CDS 50.0%
AGAAATGGGTGGGTATCAGG+AGG - chr4_1:55637841-55637860 None:intergenic 50.0%
AGGCTGCTGAGTCCAAGATA+AGG + chr4_1:55638185-55638204 Msa0557320:intron 50.0%
CAAGGCCCAGTCATATGAGA+GGG + chr4_1:55638282-55638301 Msa0557320:CDS 50.0%
CTGAAGTGGCTGATAGAGCA+CGG + chr4_1:55638425-55638444 Msa0557320:CDS 50.0%
TGAAGTGGCTGATAGAGCAC+GGG + chr4_1:55638426-55638445 Msa0557320:CDS 50.0%
GAAGAGTGAGATGCAGAGAC+TGG + chr4_1:55638474-55638493 Msa0557320:CDS 50.0%
TGAGATGCAGAGACTGGCAA+TGG + chr4_1:55638480-55638499 Msa0557320:CDS 50.0%
GAGACTGGCAATGGAAAGAC+TGG + chr4_1:55638489-55638508 Msa0557320:CDS 50.0%
! GAGAGCAACGGATTCAGAGA+AGG + chr4_1:55638585-55638604 Msa0557320:CDS 50.0%
AGTTGCGAAGCTCGAAGAGA+AGG + chr4_1:55638621-55638640 Msa0557320:CDS 50.0%
TCTGCAGCTACAATCTGCAC+AGG + chr4_1:55638786-55638805 Msa0557320:CDS 50.0%
CAACCGATGGTAAGCGATTG+AGG + chr4_1:55638881-55638900 Msa0557320:CDS 50.0%
TAAGGGGAGCTAAAAGAGCC+AGG + chr4_1:55638962-55638981 Msa0557320:CDS 50.0%
!! CTTAGGACTGGTTGTACTCC+TGG - chr4_1:55638983-55639002 None:intergenic 50.0%
TGGCTGTGTGTACTTAGGAC+TGG - chr4_1:55638995-55639014 None:intergenic 50.0%
TACACACAGCCAGAAGATGG+TGG + chr4_1:55639003-55639022 Msa0557320:CDS 50.0%
TTCTCGCTTAAGCTTCGGGA+TGG - chr4_1:55639097-55639116 None:intergenic 50.0%
!! CGGCGGGGTTTTCCTTGTTT+CGG - chr4_1:55630434-55630453 None:intergenic 55.0%
! AGATTGTGGTGACGCATCGG+CGG - chr4_1:55630451-55630470 None:intergenic 55.0%
! CGGAGATTGTGGTGACGCAT+CGG - chr4_1:55630454-55630473 None:intergenic 55.0%
CGATGCGTCACCACAATCTC+CGG + chr4_1:55630452-55630471 Msa0557320:CDS 55.0%
GATGAAGAAGATGGCCTCGC+CGG - chr4_1:55630480-55630499 None:intergenic 55.0%
!! ACAAGGCGAATAGCTCTGGG+TGG - chr4_1:55630519-55630538 None:intergenic 55.0%
CGACGGCTTCTGGATCCATA+CGG - chr4_1:55630566-55630585 None:intergenic 55.0%
CTTATCCCACTAAGCGGGGT+CGG - chr4_1:55631607-55631626 None:intergenic 55.0%
! AGGCCTTATCCCACTAAGCG+GGG - chr4_1:55631611-55631630 None:intergenic 55.0%
CTGCAGCTCTTAGGAAGCAG+TGG + chr4_1:55631735-55631754 Msa0557320:intron 55.0%
CAGCTCTTAGGAAGCAGTGG+TGG + chr4_1:55631738-55631757 Msa0557320:intron 55.0%
GACCCTGTACCAAAGGGCTT+TGG + chr4_1:55631784-55631803 Msa0557320:CDS 55.0%
GCTCCACATCCAAAGCCCTT+TGG - chr4_1:55631796-55631815 None:intergenic 55.0%
! TGTGGAGCGCACCTTTGAAG+AGG + chr4_1:55631808-55631827 Msa0557320:CDS 55.0%
GAGGACCGCACTTGATGGAA+CGG + chr4_1:55631827-55631846 Msa0557320:CDS 55.0%
ACAGACCCACAAACCGGTCA+TGG - chr4_1:55632160-55632179 None:intergenic 55.0%
! CTTCCTCAGGTGGCTTGGAA+CGG - chr4_1:55634283-55634302 None:intergenic 55.0%
ACTCACTTCCTCAGGTGGCT+TGG - chr4_1:55634288-55634307 None:intergenic 55.0%
!! CTGTAGGAGTTGGTGCAGCT+AGG + chr4_1:55634447-55634466 Msa0557320:CDS 55.0%
!! GACTGCAAGGGGTTGGTTTG+TGG + chr4_1:55634651-55634670 Msa0557320:intron 55.0%
!! TTGGCTTGGCTTGGTGGTGT+TGG + chr4_1:55635015-55635034 Msa0557320:intron 55.0%
! TTGAGGAGGAGCACACTCCA+AGG - chr4_1:55635048-55635067 None:intergenic 55.0%
TTGGAGTGTGCTCCTCCTCA+AGG + chr4_1:55635047-55635066 Msa0557320:intron 55.0%
GTGCTCCTCCTCAAGGTTTC+AGG + chr4_1:55635054-55635073 Msa0557320:intron 55.0%
!! ATCCTCGGTGCCAATTTGGG+TGG + chr4_1:55635084-55635103 Msa0557320:intron 55.0%
!! TCCTCGGTGCCAATTTGGGT+GGG + chr4_1:55635085-55635104 Msa0557320:intron 55.0%
!! CTGTCGCTTGTTATCAGCGG+CGG - chr4_1:55635189-55635208 None:intergenic 55.0%
! TGCCCTGCCAGCAGTTTTAC+TGG + chr4_1:55635215-55635234 Msa0557320:intron 55.0%
! GCCCTGCCAGCAGTTTTACT+GGG + chr4_1:55635216-55635235 Msa0557320:intron 55.0%
CACCCAGTAAAACTGCTGGC+AGG - chr4_1:55635221-55635240 None:intergenic 55.0%
CTCTGATCACTCAGAGTGGG+GGG + chr4_1:55635436-55635455 Msa0557320:intron 55.0%
TTCCAGCCGCTTGGTCAGTA+AGG - chr4_1:55637322-55637341 None:intergenic 55.0%
GCAAGCTAATCGTCGCTCAC+TGG + chr4_1:55637443-55637462 Msa0557320:CDS 55.0%
CTGCACTACTGCGGGATTTG+AGG - chr4_1:55637602-55637621 None:intergenic 55.0%
TTGCTTCGGCTGCACTACTG+CGG - chr4_1:55637611-55637630 None:intergenic 55.0%
TAGTGCAGCCGAAGCAAGGT+TGG + chr4_1:55637614-55637633 Msa0557320:CDS 55.0%
TGCTGCTGCCAACCTTGCTT+CGG - chr4_1:55637625-55637644 None:intergenic 55.0%
AAGCAAGGTTGGCAGCAGCA+AGG + chr4_1:55637625-55637644 Msa0557320:CDS 55.0%
AGCAAGGTTGGCAGCAGCAA+GGG + chr4_1:55637626-55637645 Msa0557320:CDS 55.0%
AGCTCAGTCTGCTCAAGAGG+AGG + chr4_1:55637653-55637672 Msa0557320:CDS 55.0%
CTCAAGAGGAGGCTGATGAG+TGG + chr4_1:55637664-55637683 Msa0557320:CDS 55.0%
CCTCTCATATGACTGGGCCT+TGG - chr4_1:55638284-55638303 None:intergenic 55.0%
CCAAGGCCCAGTCATATGAG+AGG + chr4_1:55638281-55638300 Msa0557320:CDS 55.0%
AGCTGCAAGGGCTACTGAAG+TGG + chr4_1:55638411-55638430 Msa0557320:CDS 55.0%
TGAAGCAGGCATGGCTCAGA+AGG + chr4_1:55638450-55638469 Msa0557320:CDS 55.0%
CACAGATTGAGAGGGCTGAG+AGG + chr4_1:55638512-55638531 Msa0557320:CDS 55.0%
AGAGCGTGAGGCACATACAC+AGG + chr4_1:55638738-55638757 Msa0557320:CDS 55.0%
! ATTGTGGTGACGCATCGGCG+GGG - chr4_1:55630449-55630468 None:intergenic 60.0%
! GATTGTGGTGACGCATCGGC+GGG - chr4_1:55630450-55630469 None:intergenic 60.0%
!! GCGAATAGCTCTGGGTGGTC+CGG - chr4_1:55630514-55630533 None:intergenic 60.0%
TGTTTGTGGTCGTGCTCGCC+AGG + chr4_1:55630626-55630645 Msa0557320:CDS 60.0%
GTTTGTGGTCGTGCTCGCCA+GGG + chr4_1:55630627-55630646 Msa0557320:CDS 60.0%
ACTAAGCGGGGTCGGCTACA+TGG - chr4_1:55631599-55631618 None:intergenic 60.0%
ATGTAGCCGACCCCGCTTAG+TGG + chr4_1:55631598-55631617 Msa0557320:intron 60.0%
TGTAGCCGACCCCGCTTAGT+GGG + chr4_1:55631599-55631618 Msa0557320:intron 60.0%
CGACCCCGCTTAGTGGGATA+AGG + chr4_1:55631605-55631624 Msa0557320:intron 60.0%
TGACCGTTCCAAGCCACCTG+AGG + chr4_1:55634277-55634296 Msa0557320:CDS 60.0%
!! AGACGCCACTTGGCTTGGCT+TGG + chr4_1:55635006-55635025 Msa0557320:intron 60.0%
CACCACCAAGCCAAGCCAAG+TGG - chr4_1:55635014-55635033 None:intergenic 60.0%
! CTTGTTATCAGCGGCGGTGG+TGG - chr4_1:55635183-55635202 None:intergenic 60.0%
!! TCGCTTGTTATCAGCGGCGG+TGG - chr4_1:55635186-55635205 None:intergenic 60.0%
GACCTTACTGACCAAGCGGC+TGG + chr4_1:55637317-55637336 Msa0557320:CDS 60.0%
!! TTCACTGGCTTCCAGCCGCT+TGG - chr4_1:55637331-55637350 None:intergenic 60.0%
AAGCGGCTGGAAGCCAGTGA+AGG + chr4_1:55637330-55637349 Msa0557320:CDS 60.0%
TGCTTCGGCTGCACTACTGC+GGG - chr4_1:55637610-55637629 None:intergenic 60.0%
GCAGTAGTGCAGCCGAAGCA+AGG + chr4_1:55637610-55637629 Msa0557320:CDS 60.0%
! GATAGAGCACGGGCTGAAGC+AGG + chr4_1:55638436-55638455 Msa0557320:CDS 60.0%
GCAGAGAGAGACTCTCAGCC+CGG - chr4_1:55638771-55638790 None:intergenic 60.0%
GTCACCACAATCTCCGGCGC+CGG + chr4_1:55630458-55630477 Msa0557320:CDS 65.0%
!! CGCCACTTGGCTTGGCTTGG+TGG + chr4_1:55635009-55635028 Msa0557320:intron 65.0%
GCCCACCCAAATTGGCACCG+AGG - chr4_1:55635089-55635108 None:intergenic 65.0%
! GTTATCAGCGGCGGTGGTGG+TGG - chr4_1:55635180-55635199 None:intergenic 65.0%
! AGCACGGGCTGAAGCAGGCA+TGG + chr4_1:55638441-55638460 Msa0557320:CDS 65.0%
! CTCGCCGGCGCCGGAGATTG+TGG - chr4_1:55630465-55630484 None:intergenic 75.0%
!! CACAATCTCCGGCGCCGGCG+AGG + chr4_1:55630463-55630482 Msa0557320:CDS 75.0%
GAAGATGGCCTCGCCGGCGC+CGG - chr4_1:55630474-55630493 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 55630339 55639596 55630339 ID=Msa0557320;Name=Msa0557320
chr4_1 mRNA 55630339 55639596 55630339 ID=Msa0557320-mRNA-1;Parent=Msa0557320;Name=Msa0557320-mRNA-1;_AED=0.09;_eAED=0.09;_QI=75|1|1|1|1|1|14|381|1061
chr4_1 exon 55630339 55630671 55630339 ID=Msa0557320-mRNA-1:exon:16618;Parent=Msa0557320-mRNA-1
chr4_1 exon 55631741 55631902 55631741 ID=Msa0557320-mRNA-1:exon:16619;Parent=Msa0557320-mRNA-1
chr4_1 exon 55632021 55632086 55632021 ID=Msa0557320-mRNA-1:exon:16620;Parent=Msa0557320-mRNA-1
chr4_1 exon 55632269 55632412 55632269 ID=Msa0557320-mRNA-1:exon:16621;Parent=Msa0557320-mRNA-1
chr4_1 exon 55632542 55632655 55632542 ID=Msa0557320-mRNA-1:exon:16622;Parent=Msa0557320-mRNA-1
chr4_1 exon 55633133 55633234 55633133 ID=Msa0557320-mRNA-1:exon:16623;Parent=Msa0557320-mRNA-1
chr4_1 exon 55633322 55633507 55633322 ID=Msa0557320-mRNA-1:exon:16624;Parent=Msa0557320-mRNA-1
chr4_1 exon 55634212 55634301 55634212 ID=Msa0557320-mRNA-1:exon:16625;Parent=Msa0557320-mRNA-1
chr4_1 exon 55634383 55634517 55634383 ID=Msa0557320-mRNA-1:exon:16626;Parent=Msa0557320-mRNA-1
chr4_1 exon 55636676 55636798 55636676 ID=Msa0557320-mRNA-1:exon:16627;Parent=Msa0557320-mRNA-1
chr4_1 exon 55637024 55637109 55637024 ID=Msa0557320-mRNA-1:exon:16628;Parent=Msa0557320-mRNA-1
chr4_1 exon 55637215 55637827 55637215 ID=Msa0557320-mRNA-1:exon:16629;Parent=Msa0557320-mRNA-1
chr4_1 exon 55637950 55638027 55637950 ID=Msa0557320-mRNA-1:exon:16630;Parent=Msa0557320-mRNA-1
chr4_1 exon 55638187 55639596 55638187 ID=Msa0557320-mRNA-1:exon:16631;Parent=Msa0557320-mRNA-1
chr4_1 five_prime_UTR 55630339 55630413 55630339 ID=Msa0557320-mRNA-1:five_prime_utr;Parent=Msa0557320-mRNA-1
chr4_1 CDS 55630414 55630671 55630414 ID=Msa0557320-mRNA-1:cds;Parent=Msa0557320-mRNA-1
chr4_1 CDS 55631741 55631902 55631741 ID=Msa0557320-mRNA-1:cds;Parent=Msa0557320-mRNA-1
chr4_1 CDS 55632021 55632086 55632021 ID=Msa0557320-mRNA-1:cds;Parent=Msa0557320-mRNA-1
chr4_1 CDS 55632269 55632412 55632269 ID=Msa0557320-mRNA-1:cds;Parent=Msa0557320-mRNA-1
chr4_1 CDS 55632542 55632655 55632542 ID=Msa0557320-mRNA-1:cds;Parent=Msa0557320-mRNA-1
chr4_1 CDS 55633133 55633234 55633133 ID=Msa0557320-mRNA-1:cds;Parent=Msa0557320-mRNA-1
chr4_1 CDS 55633322 55633507 55633322 ID=Msa0557320-mRNA-1:cds;Parent=Msa0557320-mRNA-1
chr4_1 CDS 55634212 55634301 55634212 ID=Msa0557320-mRNA-1:cds;Parent=Msa0557320-mRNA-1
chr4_1 CDS 55634383 55634517 55634383 ID=Msa0557320-mRNA-1:cds;Parent=Msa0557320-mRNA-1
chr4_1 CDS 55636676 55636798 55636676 ID=Msa0557320-mRNA-1:cds;Parent=Msa0557320-mRNA-1
chr4_1 CDS 55637024 55637109 55637024 ID=Msa0557320-mRNA-1:cds;Parent=Msa0557320-mRNA-1
chr4_1 CDS 55637215 55637827 55637215 ID=Msa0557320-mRNA-1:cds;Parent=Msa0557320-mRNA-1
chr4_1 CDS 55637950 55638027 55637950 ID=Msa0557320-mRNA-1:cds;Parent=Msa0557320-mRNA-1
chr4_1 CDS 55638187 55639215 55638187 ID=Msa0557320-mRNA-1:cds;Parent=Msa0557320-mRNA-1
chr4_1 three_prime_UTR 55639216 55639596 55639216 ID=Msa0557320-mRNA-1:three_prime_utr;Parent=Msa0557320-mRNA-1
Gene Sequence

>Msa0557320

ATGTTCAATTTGTTTAACCGAAACAAGGAAAACCCCGCCGATGCGTCACCACAATCTCCGGCGCCGGCGAGGCCATCTTCTTCATCTTCTCAGTTCACCGGACCACCCAGAGCTATTCGCCTTGTCTACTGCGATGAAAAGGGAAAGTTCCGTATGGATCCAGAAGCCGTCGCTATTCTTCAACTCGTCAAGGAACCCATCGGTGTCGTTTCTGTTTGTGGTCGTGCTCGCCAGGGAAAAAGCTATATCTTGAACCAGCTCTTAGGAAGCAGTGGTGGATTTAAAGTAGCATCTACACATCGACCCTGTACCAAAGGGCTTTGGATGTGGAGCGCACCTTTGAAGAGGACCGCACTTGATGGAACGGAGTACAATCTTCTACTATTAGACAGTGAAGGAATAGATGCTTATGATCAAACGGGAACATACAGCACCCAGATATTCTCACTGGCTGTTCTTTTATCTAGCATGTTCATTTACAACCAGATGGGTGGTATAGATGAGGCTGCTCTTGACCGTCTTTCTCTAGTCACTCAAATGACAAAGCATATTCGTGTTAGAGCTTCTGGAGAAAAGACTTCCGCGTCTGAAATAGGACAGTTTTCCCCAATTTTTGTTTGGCTCTTACGGGACTTCTATTTGGACTTGAGTGAAGATAACAGAAAAATAACACCCCGAGACTATCTAGAACTTGCTTTGCGGTCTGTTCAAGGGAACAGAAACGATGTAGCTGCTAAAAATGAGATTCGAGAATCCATTCGTGCTCTATTCCCAGATAGGGAATGCTTCACCCTTGTACGACCTTTAAACAATGAAAATGATCTACAGCGACTGGATCAGATATCATCGGACAAACTAAGACCTGAATTTCGAAGAGATATTCAAGCTTTGATAAAGTTTGTTTTTGAAAGAACAAGGCCAAAGCAAGTTGGAGCAACTATGATGACAGGTCCTGTATTGATTGGTATCACCGAATCTTATCTTGATGCACTCAACCATGGTGCCGTGCCTACTATTTCTTCCTCCTGGCAGAGTGTTGAAGAAGCAGAGTGCCGTAGGGCTTATGATTTGGCTTCTGAAGTTTATATGGCTTCTTTTGACCGTTCCAAGCCACCTGAGGAAGTCGCTTTGATGGAAGCTCACGAACAAGCAGTTCATAAGTCAATGGCTGCTTTTAATGCTAGTGCTGTAGGAGTTGGTGCAGCTAGGAAGAAATATGAAGGTCAGCTTCAGAAATTCATCAAAAAGGCTTTCGAGGATTACAAAAGGAATGCATTCATGGAGGCAGATATACAATGTTCAAATGCCATACATTCTATGGAAAAGAGGCTGAGGGCAGCTTGTAATGCTTCTGATGCTAGGGTTGATAATGTTGCAAAGGTTCTAGATGCTCTTTTAACTGAATATGAAAAGTCCATTCAAGGTCCTGGAAAATGGAAAAAACTTGCTGTCTTCTTGCAGCAAAGTTTTGAAGGCCCTGTGCTTGACCTTTTCAAGAGGGTAATAGATAAAGTTGAATCAGAAAAAAGTTCTCTTGCCTTACAACGTCGGTTGAATGAAGATAAGATGACCTTACTGACCAAGCGGCTGGAAGCCAGTGAAGGTGAAAAGTCCGAGTACATCAAGCGATATGAGGATGCCATCAACGATAAGAAGAAATTAACTGATGAATACATGAACCGCATTACTGAATTGCAAGCTAATCGTCGCTCACTGGACGAGAGATATTCTAGCTTATTGAAAACATTGGACTCTAGTAAGCAGGAATCCATGGATTGGAAAAGAAAATATGAGCAGGTTTTATCAAGGCAGAAAGCTGAGGAAGGTCAAACTAGTTCTGAAATAGCAGCCCTCAAATCCCGCAGTAGTGCAGCCGAAGCAAGGTTGGCAGCAGCAAGGGAACAAGCTCAGTCTGCTCAAGAGGAGGCTGATGAGTGGAAACGGAAGTATGATGTTGCTGTCAGAGAAGCAAAATCTGCTCTAGAGAAGGCAGCAATTGTTCAGGAGCGCACAAACAAGCAGACACAGTTGAGGGAAGATGTCTTAAGAGAAGAGTTCTCTGGAACTTTGGCTGAAAAAGATGAAGAAATAAAAGAAAAAACTGCGAAAATTGAGCATGCTGAGATGTGTTTAGCAACTCTGAAATTAGAGTTGAAGGCTGCTGAGTCCAAGATAAGGAGTTATGATACAGAAATATCGTCACTGAGGAATGAACTTAAAGATTTGACTGACAAAATGAAATCTGAAAATGCCAAGGCCCAGTCATATGAGAGGGAAGCAATAGTATATCAGCAGGAAAAGAACCATCTTGAGCAGAAGTACCAATCTGAGTTCAAAAGATTTGAGGAGGTTCAAGAAAGGTGTAAAACTGCTGAAAAAGAAGCTGCAAGGGCTACTGAAGTGGCTGATAGAGCACGGGCTGAAGCAGGCATGGCTCAGAAGGAGAAGAGTGAGATGCAGAGACTGGCAATGGAAAGACTGGCACAGATTGAGAGGGCTGAGAGGAGAATTGAAACTCTAGGAAGGGAGAAAGATAATCTGGAAGGTGAATTGCAGAGAGCAACGGATTCAGAGAAGGATGCACGTTTGACAGTTGCGAAGCTCGAAGAGAAGGTGCAACAAAGAGAGAAGGATTTAGAAGCACTTCTGGATAAAGATAAAACACACAGGAGAAATAATGCTCAGATTCTTGAACAACTTTTGGAAACAGAGCGTGAGGCACATACACAGGCAAATAACCGGGCTGAGAGTCTCTCTCTGCAGCTACAATCTGCACAGGCCAAAATTGACTCCCTACATCAAGAGCTGACTAAGTTTCGAATGAATGAAACATTGGACAGTAAGCTAAAGACAACCGATGGTAAGCGATTGAGGGTAGAGAATGACAATGGTGCTGATTCTGTACAAGACATGGATGCAAGCCCTAGATTTTTAAGGGGAGCTAAAAGAGCCAGGAGTACAACCAGTCCTAAGTACACACAGCCAGAAGATGGTGGTTCAATCTATGAGGGTGCAGAGGACAATCTTAGTCAGCAAGCCAATGAAGAGGATCATACAAAGTTCACCATCCCGAAGCTTAAGCGAGAACTGACAAAACATAACTTTGGTGATCGGTTGCTTCAGTTGAAGAATCCCATGAAGAAAGATCTTGTTGCTCTGTATGAGGAATGTATTCTTCAGAGGTGA
Protein sequence

>Msa0557320

MFNLFNRNKENPADASPQSPAPARPSSSSSQFTGPPRAIRLVYCDEKGKFRMDPEAVAILQLVKEPIGVVSVCGRARQGKSYILNQLLGSSGGFKVASTHRPCTKGLWMWSAPLKRTALDGTEYNLLLLDSEGIDAYDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDEAALDRLSLVTQMTKHIRVRASGEKTSASEIGQFSPIFVWLLRDFYLDLSEDNRKITPRDYLELALRSVQGNRNDVAAKNEIRESIRALFPDRECFTLVRPLNNENDLQRLDQISSDKLRPEFRRDIQALIKFVFERTRPKQVGATMMTGPVLIGITESYLDALNHGAVPTISSSWQSVEEAECRRAYDLASEVYMASFDRSKPPEEVALMEAHEQAVHKSMAAFNASAVGVGAARKKYEGQLQKFIKKAFEDYKRNAFMEADIQCSNAIHSMEKRLRAACNASDARVDNVAKVLDALLTEYEKSIQGPGKWKKLAVFLQQSFEGPVLDLFKRVIDKVESEKSSLALQRRLNEDKMTLLTKRLEASEGEKSEYIKRYEDAINDKKKLTDEYMNRITELQANRRSLDERYSSLLKTLDSSKQESMDWKRKYEQVLSRQKAEEGQTSSEIAALKSRSSAAEARLAAAREQAQSAQEEADEWKRKYDVAVREAKSALEKAAIVQERTNKQTQLREDVLREEFSGTLAEKDEEIKEKTAKIEHAEMCLATLKLELKAAESKIRSYDTEISSLRNELKDLTDKMKSENAKAQSYEREAIVYQQEKNHLEQKYQSEFKRFEEVQERCKTAEKEAARATEVADRARAEAGMAQKEKSEMQRLAMERLAQIERAERRIETLGREKDNLEGELQRATDSEKDARLTVAKLEEKVQQREKDLEALLDKDKTHRRNNAQILEQLLETEREAHTQANNRAESLSLQLQSAQAKIDSLHQELTKFRMNETLDSKLKTTDGKRLRVENDNGADSVQDMDASPRFLRGAKRARSTTSPKYTQPEDGGSIYEGAEDNLSQQANEEDHTKFTIPKLKRELTKHNFGDRLLQLKNPMKKDLVALYEECILQR*