Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0073780 | XP_013468193.1 | 97.443 | 704 | 14 | 2 | 1 | 702 | 1 | 702 | 0.0 | 1422 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0073780 | sp|Q653H7|ARFR_ORYSJ | 56.601 | 712 | 267 | 16 | 14 | 701 | 1 | 694 | 0.0 | 759 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0073780 | A0A072VVW0 | 97.443 | 704 | 14 | 2 | 1 | 702 | 1 | 702 | 0.0 | 1422 |
Gene ID | Type | Classification |
---|---|---|
Msa0073780 | TF | B3-ARF |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0073780 | Msa0390640 | 0.930754 | 1.032912e-93 | -8.615850e-47 |
Msa0073780 | Msa0946420 | 0.918729 | 1.088144e-86 | -8.615850e-47 |
Msa0073780 | Msa1367980 | 0.900623 | 6.089565e-78 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0073780 | MtrunA17_Chr1g0181211 | 97.395 | 691 | 14 | 2 | 14 | 702 | 1 | 689 | 0.0 | 1394 |
Msa0073780 | MtrunA17_Chr2g0326761 | 57.910 | 689 | 243 | 13 | 33 | 700 | 4 | 666 | 0.0 | 752 |
Msa0073780 | MtrunA17_Chr4g0028971 | 58.551 | 690 | 227 | 14 | 37 | 700 | 9 | 665 | 0.0 | 735 |
Msa0073780 | MtrunA17_Chr7g0264171 | 54.876 | 605 | 240 | 11 | 31 | 622 | 22 | 606 | 0.0 | 624 |
Msa0073780 | MtrunA17_Chr1g0199681 | 49.845 | 644 | 242 | 12 | 14 | 615 | 76 | 680 | 0.0 | 569 |
Msa0073780 | MtrunA17_Chr7g0264161 | 55.233 | 344 | 111 | 3 | 49 | 392 | 1 | 301 | 1.12e-124 | 373 |
Msa0073780 | MtrunA17_Chr3g0115271 | 46.389 | 457 | 213 | 9 | 37 | 483 | 16 | 450 | 4.56e-117 | 363 |
Msa0073780 | MtrunA17_Chr5g0424931 | 42.765 | 463 | 212 | 14 | 35 | 483 | 14 | 437 | 3.09e-103 | 325 |
Msa0073780 | MtrunA17_Chr5g0417281 | 38.821 | 407 | 185 | 7 | 34 | 435 | 5 | 352 | 1.41e-86 | 281 |
Msa0073780 | MtrunA17_Chr5g0436761 | 37.882 | 425 | 194 | 10 | 37 | 452 | 9 | 372 | 5.61e-80 | 262 |
Msa0073780 | MtrunA17_Chr1g0178011 | 36.190 | 420 | 203 | 10 | 35 | 446 | 7 | 369 | 2.39e-79 | 260 |
Msa0073780 | MtrunA17_Chr2g0289221 | 41.144 | 367 | 143 | 9 | 37 | 392 | 17 | 321 | 1.29e-78 | 255 |
Msa0073780 | MtrunA17_Chr4g0009751 | 30.073 | 685 | 389 | 18 | 24 | 684 | 3 | 621 | 1.39e-78 | 263 |
Msa0073780 | MtrunA17_Chr2g0282961 | 36.446 | 439 | 214 | 11 | 36 | 463 | 51 | 435 | 4.82e-77 | 259 |
Msa0073780 | MtrunA17_Chr1g0156321 | 37.209 | 387 | 190 | 6 | 33 | 412 | 36 | 376 | 6.15e-76 | 261 |
Msa0073780 | MtrunA17_Chr2g0276781 | 29.812 | 691 | 364 | 18 | 40 | 696 | 23 | 626 | 1.33e-75 | 256 |
Msa0073780 | MtrunA17_Chr8g0385791 | 35.492 | 417 | 219 | 6 | 19 | 430 | 38 | 409 | 8.79e-75 | 258 |
Msa0073780 | MtrunA17_Chr2g0326281 | 37.063 | 429 | 198 | 11 | 40 | 441 | 56 | 439 | 1.11e-72 | 251 |
Msa0073780 | MtrunA17_Chr4g0029671 | 36.867 | 415 | 204 | 8 | 40 | 438 | 54 | 426 | 8.63e-72 | 248 |
Msa0073780 | MtrunA17_Chr5g0417211 | 37.867 | 375 | 165 | 7 | 37 | 402 | 9 | 324 | 1.17e-71 | 238 |
Msa0073780 | MtrunA17_Chr4g0046371 | 32.635 | 573 | 293 | 18 | 36 | 590 | 36 | 533 | 1.21e-71 | 246 |
Msa0073780 | MtrunA17_Chr2g0277461 | 34.414 | 401 | 194 | 11 | 39 | 430 | 12 | 352 | 4.08e-71 | 238 |
Msa0073780 | MtrunA17_Chr5g0433301 | 35.038 | 391 | 204 | 7 | 34 | 418 | 18 | 364 | 5.45e-70 | 244 |
Msa0073780 | MtrunA17_Chr8g0376771 | 36.000 | 400 | 206 | 8 | 31 | 425 | 14 | 368 | 1.55e-69 | 244 |
Msa0073780 | MtrunA17_Chr4g0070181 | 37.530 | 413 | 208 | 7 | 18 | 425 | 1 | 368 | 1.95e-69 | 246 |
Msa0073780 | MtrunA17_Chr2g0285461 | 36.409 | 401 | 204 | 9 | 31 | 425 | 14 | 369 | 2.17e-68 | 241 |
Msa0073780 | MtrunA17_Chr8g0389081 | 38.342 | 386 | 186 | 6 | 37 | 415 | 29 | 369 | 5.27e-68 | 242 |
Msa0073780 | MtrunA17_Chr3g0109391 | 34.271 | 391 | 207 | 8 | 34 | 418 | 20 | 366 | 3.50e-65 | 231 |
Msa0073780 | MtrunA17_Chr8g0346711 | 37.221 | 403 | 192 | 10 | 40 | 433 | 29 | 379 | 3.93e-64 | 225 |
Msa0073780 | MtrunA17_Chr7g0239061 | 34.529 | 446 | 220 | 14 | 28 | 464 | 4 | 386 | 1.28e-63 | 224 |
Msa0073780 | MtrunA17_Chr2g0301251 | 47.059 | 221 | 110 | 2 | 28 | 243 | 11 | 229 | 9.03e-58 | 212 |
Msa0073780 | MtrunA17_Chr2g0301251 | 40.777 | 103 | 60 | 1 | 313 | 415 | 257 | 358 | 8.26e-17 | 85.1 |
Msa0073780 | MtrunA17_Chr5g0424801 | 35.749 | 414 | 194 | 15 | 37 | 438 | 9 | 362 | 4.04e-57 | 198 |
Msa0073780 | MtrunA17_Chr5g0425261 | 35.749 | 414 | 194 | 15 | 37 | 438 | 9 | 362 | 1.52e-56 | 197 |
Msa0073780 | MtrunA17_Chr2g0277531 | 31.781 | 365 | 177 | 11 | 37 | 392 | 17 | 318 | 3.56e-55 | 191 |
Msa0073780 | MtrunA17_Chr5g0424741 | 29.735 | 528 | 248 | 18 | 35 | 493 | 7 | 480 | 1.03e-49 | 182 |
Msa0073780 | MtrunA17_Chr5g0425661 | 41.667 | 192 | 106 | 4 | 40 | 228 | 37 | 225 | 9.51e-47 | 166 |
Msa0073780 | MtrunA17_Chr8g0356211 | 30.255 | 314 | 158 | 9 | 148 | 461 | 2 | 254 | 4.24e-37 | 141 |
Msa0073780 | MtrunA17_Chr5g0425651 | 41.071 | 112 | 61 | 2 | 306 | 414 | 1 | 110 | 5.36e-19 | 83.6 |
Msa0073780 | MtrunA17_Chr5g0424791 | 33.117 | 154 | 88 | 5 | 85 | 236 | 11 | 151 | 5.91e-17 | 78.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0073780 | AT4G30080.1 | 55.800 | 681 | 257 | 14 | 33 | 699 | 12 | 662 | 0.0 | 694 |
Msa0073780 | AT2G28350.1 | 53.009 | 698 | 258 | 18 | 32 | 699 | 2 | 659 | 0.0 | 650 |
Msa0073780 | AT2G28350.2 | 53.009 | 698 | 258 | 18 | 32 | 699 | 2 | 659 | 0.0 | 649 |
Msa0073780 | AT1G77850.1 | 42.208 | 462 | 228 | 12 | 35 | 482 | 14 | 450 | 2.70e-113 | 354 |
Msa0073780 | AT1G77850.2 | 41.991 | 462 | 229 | 11 | 35 | 482 | 14 | 450 | 3.29e-113 | 354 |
Msa0073780 | AT1G59750.4 | 31.454 | 674 | 366 | 16 | 40 | 696 | 22 | 616 | 8.83e-80 | 268 |
Msa0073780 | AT1G59750.1 | 31.642 | 670 | 375 | 14 | 40 | 696 | 22 | 621 | 3.10e-79 | 266 |
Msa0073780 | AT1G59750.3 | 31.642 | 670 | 375 | 14 | 40 | 696 | 22 | 621 | 3.10e-79 | 266 |
Msa0073780 | AT1G59750.2 | 31.493 | 670 | 373 | 15 | 40 | 696 | 22 | 618 | 1.23e-78 | 265 |
Msa0073780 | AT1G19850.2 | 37.859 | 383 | 186 | 6 | 37 | 412 | 40 | 377 | 8.19e-76 | 262 |
Msa0073780 | AT1G19850.1 | 37.859 | 383 | 186 | 6 | 37 | 412 | 51 | 388 | 1.18e-75 | 261 |
Msa0073780 | AT2G33860.1 | 35.792 | 461 | 233 | 11 | 36 | 481 | 52 | 464 | 3.83e-75 | 254 |
Msa0073780 | AT2G46530.1 | 29.887 | 706 | 331 | 22 | 15 | 696 | 3 | 568 | 6.81e-75 | 253 |
Msa0073780 | AT5G60450.2 | 37.838 | 407 | 189 | 11 | 40 | 430 | 41 | 399 | 2.48e-74 | 255 |
Msa0073780 | AT2G46530.3 | 30.250 | 681 | 318 | 21 | 40 | 696 | 42 | 589 | 4.35e-74 | 251 |
Msa0073780 | AT4G23980.1 | 29.985 | 677 | 367 | 18 | 40 | 696 | 12 | 601 | 5.82e-74 | 251 |
Msa0073780 | AT5G60450.1 | 37.838 | 407 | 189 | 11 | 40 | 430 | 65 | 423 | 5.82e-74 | 255 |
Msa0073780 | AT5G37020.2 | 36.041 | 394 | 200 | 6 | 32 | 418 | 14 | 362 | 7.59e-73 | 251 |
Msa0073780 | AT5G37020.1 | 36.041 | 394 | 200 | 6 | 32 | 418 | 14 | 362 | 2.77e-72 | 251 |
Msa0073780 | AT4G23980.2 | 29.690 | 677 | 367 | 18 | 40 | 696 | 12 | 599 | 3.95e-72 | 246 |
Msa0073780 | AT5G62000.2 | 34.346 | 428 | 223 | 7 | 15 | 430 | 30 | 411 | 1.68e-71 | 249 |
Msa0073780 | AT5G62000.5 | 34.346 | 428 | 223 | 7 | 15 | 430 | 30 | 411 | 1.68e-71 | 249 |
Msa0073780 | AT5G62000.3 | 34.346 | 428 | 223 | 7 | 15 | 430 | 30 | 411 | 1.68e-71 | 249 |
Msa0073780 | AT5G62000.1 | 34.346 | 428 | 223 | 7 | 15 | 430 | 30 | 411 | 1.68e-71 | 249 |
Msa0073780 | AT5G62000.4 | 34.346 | 428 | 223 | 7 | 15 | 430 | 30 | 411 | 1.69e-71 | 249 |
Msa0073780 | AT3G61830.1 | 35.147 | 441 | 224 | 12 | 22 | 455 | 7 | 392 | 3.10e-70 | 241 |
Msa0073780 | AT1G30330.1 | 35.910 | 401 | 206 | 9 | 31 | 425 | 14 | 369 | 1.54e-68 | 242 |
Msa0073780 | AT1G30330.3 | 35.930 | 398 | 204 | 9 | 34 | 425 | 19 | 371 | 2.28e-68 | 242 |
Msa0073780 | AT1G30330.2 | 35.930 | 398 | 204 | 9 | 34 | 425 | 19 | 371 | 2.28e-68 | 242 |
Msa0073780 | AT1G19220.1 | 36.855 | 407 | 207 | 6 | 28 | 429 | 11 | 372 | 2.60e-66 | 237 |
Msa0073780 | AT5G20730.2 | 36.609 | 407 | 208 | 6 | 28 | 429 | 12 | 373 | 2.93e-66 | 238 |
Msa0073780 | AT5G20730.3 | 36.520 | 408 | 208 | 7 | 28 | 429 | 12 | 374 | 5.58e-65 | 234 |
Msa0073780 | AT5G20730.1 | 36.520 | 408 | 208 | 7 | 28 | 429 | 12 | 374 | 7.12e-65 | 233 |
Msa0073780 | AT1G35520.1 | 28.951 | 677 | 347 | 22 | 40 | 696 | 27 | 589 | 1.26e-61 | 217 |
Msa0073780 | AT1G34410.1 | 28.358 | 670 | 360 | 20 | 40 | 696 | 27 | 589 | 2.05e-61 | 216 |
Msa0073780 | AT1G34390.1 | 28.125 | 672 | 359 | 23 | 40 | 697 | 27 | 588 | 9.58e-59 | 209 |
Msa0073780 | AT3G61830.2 | 35.925 | 373 | 183 | 10 | 84 | 455 | 24 | 341 | 2.61e-57 | 204 |
Msa0073780 | AT1G34310.1 | 34.988 | 403 | 196 | 11 | 40 | 433 | 27 | 372 | 2.67e-57 | 205 |
Msa0073780 | AT1G35240.1 | 34.286 | 420 | 209 | 12 | 40 | 450 | 27 | 388 | 3.14e-57 | 205 |
Msa0073780 | AT1G35540.1 | 34.336 | 399 | 199 | 10 | 40 | 430 | 27 | 370 | 9.81e-57 | 204 |
Msa0073780 | AT2G33860.2 | 36.467 | 351 | 169 | 8 | 140 | 481 | 2 | 307 | 5.05e-56 | 198 |
Msa0073780 | AT2G46530.2 | 29.668 | 573 | 261 | 18 | 139 | 696 | 36 | 481 | 8.04e-55 | 196 |
Msa0073780 | AT1G34170.1 | 32.587 | 402 | 204 | 11 | 40 | 431 | 25 | 369 | 1.83e-53 | 192 |
Msa0073780 | AT5G37020.3 | 35.943 | 281 | 134 | 4 | 140 | 418 | 31 | 267 | 1.95e-47 | 179 |
Msa0073780 | AT1G34170.2 | 31.095 | 402 | 184 | 11 | 40 | 431 | 25 | 343 | 7.15e-47 | 173 |
Msa0073780 | AT1G34170.3 | 31.095 | 402 | 184 | 11 | 40 | 431 | 25 | 343 | 2.54e-46 | 173 |
Msa0073780 | AT1G43950.1 | 41.346 | 208 | 102 | 7 | 40 | 239 | 27 | 222 | 3.56e-38 | 142 |
Msa0073780 | ATMG00940.1 | 37.500 | 168 | 90 | 3 | 227 | 393 | 1 | 154 | 1.14e-23 | 98.6 |
Msa0073780 | AT2G46870.1 | 34.862 | 109 | 64 | 2 | 129 | 237 | 24 | 125 | 3.35e-11 | 65.5 |
Msa0073780 | AT3G25730.1 | 36.458 | 96 | 59 | 1 | 140 | 233 | 183 | 278 | 5.86e-11 | 65.1 |
Msa0073780 | AT3G61970.1 | 27.670 | 206 | 120 | 7 | 132 | 316 | 4 | 201 | 7.68e-11 | 64.3 |
Find 205 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTGAAGATGAATATATTTA+TGG | 0.118268 | 1_2:+47652769 | Msa0073780:CDS |
GTCTCGAATAAGTTGGTTTA+TGG | 0.152750 | 1_2:+47653819 | Msa0073780:CDS |
AGATGGAAATACCAATAAAA+TGG | 0.189014 | 1_2:+47654761 | Msa0073780:CDS |
GCATAAACCTCATCTGTTTC+AGG | 0.203134 | 1_2:-47653031 | None:intergenic |
CCCTCCTCTTCAGAACATTT+TGG | 0.208126 | 1_2:+47653258 | Msa0073780:CDS |
TGAGAAAGGTGAAAGGTTTA+TGG | 0.219953 | 1_2:-47654301 | None:intergenic |
CGAAGAAACGGAAGCAAGTT+TGG | 0.233645 | 1_2:+47654878 | Msa0073780:CDS |
TAAGCTTAAGCTTGTTCCTT+TGG | 0.291537 | 1_2:+47653054 | Msa0073780:CDS |
TGGTTTATGGGAATTGTATC+TGG | 0.292586 | 1_2:+47653832 | Msa0073780:CDS |
GAAGAGAAGCAGTGAGCAAC+TGG | 0.298486 | 1_2:+47652501 | Msa0073780:five_prime_UTR |
GAAACGATGGCACTGAAATT+TGG | 0.305036 | 1_2:-47654377 | None:intergenic |
GGACAATTCATGAAGTTAAC+AGG | 0.315804 | 1_2:-47652953 | None:intergenic |
TCGTTTCCTAGTAACCTTCT+AGG | 0.317283 | 1_2:+47654393 | Msa0073780:CDS |
AGTTCAGGCAGGTCTATTTC+CGG | 0.319570 | 1_2:+47654521 | Msa0073780:CDS |
TCATTGTGCGTGTATGCTTT+TGG | 0.320211 | 1_2:+47651925 | Msa0073780:five_prime_UTR |
TTCACCTTGGAGGCTTCTTC+AGG | 0.328238 | 1_2:+47653888 | Msa0073780:CDS |
AAGCTTAAGCTTGTTCCTTT+GGG | 0.328422 | 1_2:+47653055 | Msa0073780:CDS |
AGAAGCCTCCAAGGTGAATT+AGG | 0.335922 | 1_2:-47653883 | None:intergenic |
CTTGTTCCTTTGGGTGGAAA+TGG | 0.343258 | 1_2:+47653064 | Msa0073780:CDS |
ATGCAGATTCGATGGTGTTC+TGG | 0.343933 | 1_2:+47653760 | Msa0073780:CDS |
ACAATTGACCTTTCTTTACT+TGG | 0.344982 | 1_2:+47654951 | Msa0073780:CDS |
GACAATCTCAATTTCTTCCT+TGG | 0.347743 | 1_2:-47654327 | None:intergenic |
ACCGCTTGAAGGACCGCTTC+TGG | 0.350997 | 1_2:-47653640 | None:intergenic |
TCTCGAATAAGTTGGTTTAT+GGG | 0.357035 | 1_2:+47653820 | Msa0073780:CDS |
AATGTCTTTGCAAATGAAAC+AGG | 0.359372 | 1_2:-47653145 | None:intergenic |
ATTTAATTGTTCAAGACATT+AGG | 0.360476 | 1_2:+47652370 | Msa0073780:five_prime_UTR |
ATGGCGAGACGTGGAAGTTT+AGG | 0.367612 | 1_2:+47653293 | Msa0073780:CDS |
CATGCCAGCAGGAGTACTTT+CGG | 0.368965 | 1_2:-47654442 | None:intergenic |
TCATTATGGTCTTCCGATAT+CGG | 0.371359 | 1_2:+47654482 | Msa0073780:CDS |
CATGAGGATCCATTACCATT+AGG | 0.376847 | 1_2:+47653481 | Msa0073780:CDS |
CTCTCACTAGAGGAGCGTTT+TGG | 0.379568 | 1_2:-47654831 | None:intergenic |
CTGGCTCCCTGCATGCCAGC+AGG | 0.380532 | 1_2:-47654453 | None:intergenic |
TTCTTCCTTGGTTGTGAGAA+AGG | 0.380986 | 1_2:-47654315 | None:intergenic |
CGCGGTTATCCTTATACCAT+TGG | 0.383301 | 1_2:-47654857 | None:intergenic |
TGAGAGTTTCCAATGGTATA+AGG | 0.391430 | 1_2:+47654848 | Msa0073780:CDS |
CCGCTAAAGTTACCGCTTGA+AGG | 0.392870 | 1_2:-47653651 | None:intergenic |
CTGCTGGCATGCAGGGAGCC+AGG | 0.396598 | 1_2:+47654454 | Msa0073780:CDS |
AACTTGCTTCCGTTTCTTCG+CGG | 0.399377 | 1_2:-47654875 | None:intergenic |
AGTTTGTTGATCCCCTTCTC+TGG | 0.400220 | 1_2:+47653860 | Msa0073780:CDS |
AACTCAGGCGCGAATATGAC+TGG | 0.403386 | 1_2:+47653601 | Msa0073780:CDS |
AATCACAAGAAGCTTCTTGC+CGG | 0.403468 | 1_2:+47653376 | Msa0073780:CDS |
TAAAAGTAAACAAAAGTCAT+TGG | 0.409037 | 1_2:+47651861 | Msa0073780:five_prime_UTR |
GCTGTACAAAATTGAAAGAA+TGG | 0.416647 | 1_2:-47655324 | None:intergenic |
AAGGAGGTTGACTATTCTAA+TGG | 0.418815 | 1_2:+47655286 | Msa0073780:CDS |
GGAGCCAGGCATGCTCATTA+TGG | 0.423939 | 1_2:+47654468 | Msa0073780:CDS |
TTTCGGGTAGACAACGGAAT+AGG | 0.433921 | 1_2:-47654425 | None:intergenic |
TGGTATTTCCATCTGATGAA+TGG | 0.434165 | 1_2:-47654752 | None:intergenic |
GGCTAATAAGCAACCGTTTG+AGG | 0.435944 | 1_2:+47653672 | Msa0073780:CDS |
CCAACAGGATTCCACCCTAA+TGG | 0.436228 | 1_2:-47653496 | None:intergenic |
ATCCTCCATTGAGCAATAGA+AGG | 0.439586 | 1_2:+47655358 | Msa0073780:three_prime_UTR |
AGAAAGCTGGCAGACATGTT+TGG | 0.443426 | 1_2:+47654993 | Msa0073780:CDS |
GTGCTCTACCGTGATATATC+TGG | 0.445579 | 1_2:+47655044 | Msa0073780:CDS |
GGAATCAAAGGTGAAACCTT+TGG | 0.447087 | 1_2:-47652974 | None:intergenic |
TACACAGAATGAGAATCAAA+TGG | 0.448127 | 1_2:+47653543 | Msa0073780:CDS |
ATGAGGATCCATTACCATTA+GGG | 0.450034 | 1_2:+47653482 | Msa0073780:CDS |
TCTGGCCTAATTCACCTTGG+AGG | 0.451766 | 1_2:+47653878 | Msa0073780:CDS |
TCTCCACCTCAGTAAAGTTC+AGG | 0.453129 | 1_2:+47654506 | Msa0073780:CDS |
ACACAGAATGAGAATCAAAT+GGG | 0.454771 | 1_2:+47653544 | Msa0073780:CDS |
TAAGGATAACCGCGAAGAAA+CGG | 0.457301 | 1_2:+47654866 | Msa0073780:CDS |
ATGATCAAAAGGCACGAAAC+CGG | 0.458029 | 1_2:-47654544 | None:intergenic |
GTCATTAGAGATTTGTTGCT+CGG | 0.460103 | 1_2:-47654730 | None:intergenic |
GTTTGTGATTCTTACCTGAA+TGG | 0.461365 | 1_2:-47655092 | None:intergenic |
GATGGAAATACCAATAAAAT+GGG | 0.463679 | 1_2:+47654762 | Msa0073780:CDS |
CTGAGGTGGAGATCCGATAT+CGG | 0.464440 | 1_2:-47654495 | None:intergenic |
AGAGAGAGACAGTTTATGGA+TGG | 0.465484 | 1_2:-47651972 | None:intergenic |
ATGCCAGCAGGAGTACTTTC+GGG | 0.465859 | 1_2:-47654441 | None:intergenic |
TGGGATTCGACGAGCGAAGA+AGG | 0.469310 | 1_2:+47653444 | Msa0073780:CDS |
CACTGAAATTTGGCCGTCGA+GGG | 0.472008 | 1_2:-47654367 | None:intergenic |
GAACAATTAAATATCTCAAA+GGG | 0.478597 | 1_2:-47652359 | None:intergenic |
ATAGGTTGCTCTGACCTAGA+AGG | 0.479580 | 1_2:-47654407 | None:intergenic |
TGCATTGCCGCCTCTACTAA+AGG | 0.482510 | 1_2:-47653742 | None:intergenic |
CAACTATGGCATGCTTGTGC+AGG | 0.483052 | 1_2:+47652854 | Msa0073780:CDS |
GGATTCCACCCTAATGGTAA+TGG | 0.485472 | 1_2:-47653490 | None:intergenic |
ATCACAAGAAGCTTCTTGCC+GGG | 0.486243 | 1_2:+47653377 | Msa0073780:CDS |
AAGTACTCCTGCTGGCATGC+AGG | 0.486614 | 1_2:+47654446 | Msa0073780:CDS |
AAAATGGTGATCTTTGTGTT+GGG | 0.488407 | 1_2:+47653425 | Msa0073780:CDS |
TTAATAGATAAAACTTTGCA+TGG | 0.488914 | 1_2:-47652995 | None:intergenic |
AGACGAATCCTCGGTTTCAA+AGG | 0.490672 | 1_2:-47653800 | None:intergenic |
CGACGAGCGAAGAAGGGTAT+TGG | 0.491306 | 1_2:+47653451 | Msa0073780:CDS |
TTCTCTGGCCTAATTCACCT+TGG | 0.492130 | 1_2:+47653875 | Msa0073780:CDS |
CCTTTGGGTGGAAATGGTAA+TGG | 0.496376 | 1_2:+47653070 | Msa0073780:CDS |
AAAACTTTGCATGGAATCAA+AGG | 0.504526 | 1_2:-47652986 | None:intergenic |
CTTAAGCTTGTTCCTTTGGG+TGG | 0.509650 | 1_2:+47653058 | Msa0073780:CDS |
ATTTACTGCAAAATGTAAGA+AGG | 0.509927 | 1_2:+47654238 | Msa0073780:CDS |
AGTTTAGCAGCATGATCAAA+AGG | 0.510146 | 1_2:-47654555 | None:intergenic |
CTCTGACCTAGAAGGTTACT+AGG | 0.513995 | 1_2:-47654399 | None:intergenic |
AAGTTTAGGCATATTTATAG+AGG | 0.517507 | 1_2:+47653307 | Msa0073780:CDS |
TGTCTCTTGCTTACTATCCA+TGG | 0.518182 | 1_2:+47654629 | Msa0073780:CDS |
TGAACAATTAAATATCTCAA+AGG | 0.519045 | 1_2:-47652360 | None:intergenic |
CCATTAGGGTGGAATCCTGT+TGG | 0.519653 | 1_2:+47653496 | Msa0073780:CDS |
GGAAGCAAGTTTGGAGAGTA+CGG | 0.521728 | 1_2:+47654887 | Msa0073780:CDS |
TGACTGGGAGGGAAAAGGTT+AGG | 0.521859 | 1_2:+47653617 | Msa0073780:CDS |
TAAACTTTACTGTTCACTGT+TGG | 0.522539 | 1_2:-47652893 | None:intergenic |
TGCCTCCTTCTATTGCTCAA+TGG | 0.523689 | 1_2:-47655363 | None:intergenic |
TGATGAACTGTACAGAAAGC+TGG | 0.523736 | 1_2:+47654980 | Msa0073780:CDS |
GGTGTTTAGATCCTCAACTA+TGG | 0.524660 | 1_2:+47652840 | Msa0073780:CDS |
GGGTAGTAAATAACCTCAAA+CGG | 0.525195 | 1_2:-47653685 | None:intergenic |
CATAAGATCCAAGTAAAGAA+AGG | 0.525657 | 1_2:-47654959 | None:intergenic |
ACGAGGAGTTCCCGAACCAT+CGG | 0.527122 | 1_2:-47654793 | None:intergenic |
GCCAAAATGTTCTGAAGAGG+AGG | 0.527805 | 1_2:-47653259 | None:intergenic |
TTCTGTGTAAACCAAGGAAG+AGG | 0.532226 | 1_2:-47653529 | None:intergenic |
GAATATGACTGGGAGGGAAA+AGG | 0.532595 | 1_2:+47653612 | Msa0073780:CDS |
ATGTAAGAAGGGTGAGTCCA+TGG | 0.533350 | 1_2:+47654250 | Msa0073780:CDS |
AGGATTCGTCTCGAATAAGT+TGG | 0.533362 | 1_2:+47653812 | Msa0073780:CDS |
GAAAATGGTGATCTTTGTGT+TGG | 0.533797 | 1_2:+47653424 | Msa0073780:CDS |
GAAAGAGATGATGGCCGACA+TGG | 0.534082 | 1_2:-47652022 | None:intergenic |
ACATTGGAGAGGAACCATTC+AGG | 0.535436 | 1_2:+47655078 | Msa0073780:CDS |
TCTAATGACCATTCATCAGA+TGG | 0.537635 | 1_2:+47654744 | Msa0073780:CDS |
AGTACTCCTGCTGGCATGCA+GGG | 0.540145 | 1_2:+47654447 | Msa0073780:CDS |
AAGACCATAATGAGCATGCC+TGG | 0.540953 | 1_2:-47654472 | None:intergenic |
AATTCAAAGGAAAGAGATGA+TGG | 0.541265 | 1_2:-47652031 | None:intergenic |
GCATGCTTGTGCAGGTGGAA+TGG | 0.542227 | 1_2:+47652862 | Msa0073780:CDS |
CTCCTTCTATTGCTCAATGG+AGG | 0.544636 | 1_2:-47655360 | None:intergenic |
CCTTCAAGCGGTAACTTTAG+CGG | 0.549169 | 1_2:+47653651 | Msa0073780:CDS |
GCGAAGAAGGGTATTGGTGG+TGG | 0.550842 | 1_2:+47653457 | Msa0073780:CDS |
GGGATTCGACGAGCGAAGAA+GGG | 0.551807 | 1_2:+47653445 | Msa0073780:CDS |
AAAGTTTATTACTTTCCTCA+AGG | 0.553230 | 1_2:+47652908 | Msa0073780:CDS |
CTATGGCATGCTTGTGCAGG+TGG | 0.553241 | 1_2:+47652857 | Msa0073780:CDS |
CTACCCGAAAGTACTCCTGC+TGG | 0.554091 | 1_2:+47654438 | Msa0073780:CDS |
TGTGAAGGCGCCTTTAGTAG+AGG | 0.555008 | 1_2:+47653732 | Msa0073780:CDS |
AAGGTGAATTAGGCCAGAGA+AGG | 0.557096 | 1_2:-47653873 | None:intergenic |
TTGAGGTGGATTCAATTCAA+AGG | 0.559448 | 1_2:-47652044 | None:intergenic |
TAACTTCATGAATTGTCCAA+AGG | 0.561840 | 1_2:+47652958 | Msa0073780:CDS |
AATAACAATGGTTTGAACTC+AGG | 0.561882 | 1_2:+47653586 | Msa0073780:CDS |
AACTCTGGCGTACTTGCGCG+AGG | 0.565767 | 1_2:-47653706 | None:intergenic |
TTTACTGCAAAATGTAAGAA+GGG | 0.567494 | 1_2:+47654239 | Msa0073780:CDS |
TTAGCCAAAATGTTCTGAAG+AGG | 0.569408 | 1_2:-47653262 | None:intergenic |
GCACTGAAATTTGGCCGTCG+AGG | 0.570322 | 1_2:-47654368 | None:intergenic |
CCATTACCATTTCCACCCAA+AGG | 0.573446 | 1_2:-47653070 | None:intergenic |
CAAGATGGCCTTTGAAACCG+AGG | 0.577088 | 1_2:+47653792 | Msa0073780:CDS |
CGAGCGAAGAAGGGTATTGG+TGG | 0.577713 | 1_2:+47653454 | Msa0073780:CDS |
GCTACTAATTCAACCAACCA+TGG | 0.579195 | 1_2:-47654267 | None:intergenic |
ATTCATCAGAAGAAGTTGAA+AGG | 0.580416 | 1_2:+47652819 | Msa0073780:CDS |
AGGTGAATTAGGCCAGAGAA+GGG | 0.583510 | 1_2:-47653872 | None:intergenic |
ATTAACAACAACAATAACAA+TGG | 0.588569 | 1_2:+47653574 | Msa0073780:CDS |
CACCTCAGTAAAGTTCAGGC+AGG | 0.589149 | 1_2:+47654510 | Msa0073780:CDS |
TATGATCACACAGTAACCGC+TGG | 0.589638 | 1_2:-47652576 | None:intergenic |
CTGCCTGAACTTTACTGAGG+TGG | 0.589800 | 1_2:-47654509 | None:intergenic |
AAAGGTGAAAGGTTTATGGA+TGG | 0.590026 | 1_2:-47654297 | None:intergenic |
CTGAAATTTGGCCGTCGAGG+GGG | 0.590791 | 1_2:-47654365 | None:intergenic |
TCAAAAGGCACGAAACCGGC+CGG | 0.591651 | 1_2:-47654540 | None:intergenic |
GGCGCCTTCACACAAAACTC+TGG | 0.592521 | 1_2:-47653721 | None:intergenic |
CAGGCAGGTCTATTTCCGGC+CGG | 0.592530 | 1_2:+47654525 | Msa0073780:CDS |
GTAGTCAAAAGATGCCGCCT+CGG | 0.596640 | 1_2:-47653334 | None:intergenic |
AAGATGTTCATGGCGAGACG+TGG | 0.596686 | 1_2:+47653284 | Msa0073780:CDS |
AGGCGGCAATGCAGATTCGA+TGG | 0.597819 | 1_2:+47653752 | Msa0073780:CDS |
TCTGATGCTAACAATGGTGG+AGG | 0.600675 | 1_2:+47653175 | Msa0073780:CDS |
GTTACCTGAAGAAGCCTCCA+AGG | 0.601497 | 1_2:-47653892 | None:intergenic |
GCTGCAGATTATGACACTGT+TGG | 0.602356 | 1_2:+47653100 | Msa0073780:CDS |
TTCTGGAATAAGATTCAAGA+TGG | 0.603114 | 1_2:+47653777 | Msa0073780:CDS |
GGGTATTGGTGGTGGACATG+AGG | 0.604425 | 1_2:+47653465 | Msa0073780:CDS |
TAGAAAAGAGAATCTTGAGG+TGG | 0.605921 | 1_2:-47652058 | None:intergenic |
TTCTCATTCTGTGTAAACCA+AGG | 0.607875 | 1_2:-47653535 | None:intergenic |
GCAGATTATGACACTGTTGG+AGG | 0.608851 | 1_2:+47653103 | Msa0073780:CDS |
TGGCCGAAAAGAACAAGCTG+AGG | 0.609518 | 1_2:-47654696 | None:intergenic |
TTGGTTGTGAGAAAGGTGAA+AGG | 0.610407 | 1_2:-47654308 | None:intergenic |
CAATCTGATGCTAACAATGG+TGG | 0.611120 | 1_2:+47653172 | Msa0073780:CDS |
GCATGTTCAGCATGACCTTG+AGG | 0.617891 | 1_2:-47652923 | None:intergenic |
TCACAAGAAGCTTCTTGCCG+GGG | 0.620934 | 1_2:+47653378 | Msa0073780:CDS |
TCTGGAGCAGTCAAACACAT+TGG | 0.623032 | 1_2:+47655062 | Msa0073780:CDS |
ACTTATTCGAGACGAATCCT+CGG | 0.623357 | 1_2:-47653809 | None:intergenic |
AAGAGAAGCAGTGAGCAACT+GGG | 0.624273 | 1_2:+47652502 | Msa0073780:five_prime_UTR |
AATGTTCTGAAGAGGAGGGT+CGG | 0.624657 | 1_2:-47653254 | None:intergenic |
AGACTGAGTAGAACTTGCCA+TGG | 0.625027 | 1_2:-47654646 | None:intergenic |
GCACAAGCATGCCATAGTTG+AGG | 0.626456 | 1_2:-47652851 | None:intergenic |
ATTTAGAAAAGAGAATCTTG+AGG | 0.626510 | 1_2:-47652061 | None:intergenic |
GGTAAGACTTGTTGATGACG+AGG | 0.626525 | 1_2:-47654810 | None:intergenic |
ACTGAAATTTGGCCGTCGAG+GGG | 0.629416 | 1_2:-47654366 | None:intergenic |
TCTCTGCACTGCATCCATGT+CGG | 0.630976 | 1_2:+47652008 | Msa0073780:five_prime_UTR |
TTTCCCTCGTTTGGATTACG+CGG | 0.631927 | 1_2:+47653231 | Msa0073780:CDS |
AGGATCCATTACCATTAGGG+TGG | 0.632365 | 1_2:+47653485 | Msa0073780:CDS |
GCCAGAAGCGGTCCTTCAAG+CGG | 0.635688 | 1_2:+47653639 | Msa0073780:CDS |
TTTCTCGAATCAGAAGATGT+CGG | 0.638567 | 1_2:+47654924 | Msa0073780:CDS |
GGCTGATCCTGAAACAGATG+AGG | 0.642209 | 1_2:+47653024 | Msa0073780:CDS |
TCGAATCAGAAGATGTCGGT+CGG | 0.645828 | 1_2:+47654928 | Msa0073780:CDS |
CTCCATTGAGCAATAGAAGG+AGG | 0.646560 | 1_2:+47655361 | Msa0073780:three_prime_UTR |
ACTCAGGCGCGAATATGACT+GGG | 0.647010 | 1_2:+47653602 | Msa0073780:CDS |
AGGCGCGAATATGACTGGGA+GGG | 0.648683 | 1_2:+47653606 | Msa0073780:CDS |
TTTCACCTTTCTCACAACCA+AGG | 0.649147 | 1_2:+47654310 | Msa0073780:CDS |
GGAAAAGGTTAGGCCAGAAG+CGG | 0.650274 | 1_2:+47653627 | Msa0073780:CDS |
TGACTGCTCCAGATATATCA+CGG | 0.657225 | 1_2:-47655052 | None:intergenic |
CCAAAATGTTCTGAAGAGGA+GGG | 0.662547 | 1_2:-47653258 | None:intergenic |
ATCGTCTCAGCACAATACCT+AGG | 0.664599 | 1_2:-47653208 | None:intergenic |
CCATTGGAAACTCTCACTAG+AGG | 0.665637 | 1_2:-47654841 | None:intergenic |
CCTCTAGTGAGAGTTTCCAA+TGG | 0.667381 | 1_2:+47654841 | Msa0073780:CDS |
ACTCAATCTGATGCTAACAA+TGG | 0.675509 | 1_2:+47653169 | Msa0073780:CDS |
ACTCTGGCGTACTTGCGCGA+GGG | 0.681238 | 1_2:-47653705 | None:intergenic |
AAGAAGGGTGAGTCCATGGT+TGG | 0.682554 | 1_2:+47654254 | Msa0073780:CDS |
CAGGCGCGAATATGACTGGG+AGG | 0.684044 | 1_2:+47653605 | Msa0073780:CDS |
GAGTACTTTCGGGTAGACAA+CGG | 0.687017 | 1_2:-47654431 | None:intergenic |
ATTAGGTTATTAGAGACACT+AGG | 0.687638 | 1_2:-47654579 | None:intergenic |
GGATGGATGATGCAATGCAA+TGG | 0.688023 | 1_2:-47651955 | None:intergenic |
GGTGAATTAGGCCAGAGAAG+GGG | 0.693414 | 1_2:-47653871 | None:intergenic |
AGCAGTCAAACACATTGGAG+AGG | 0.695616 | 1_2:+47655067 | Msa0073780:CDS |
CGGCCGCGTAATCCAAACGA+GGG | 0.702235 | 1_2:-47653234 | None:intergenic |
AGAAGGTTACTAGGAAACGA+TGG | 0.704217 | 1_2:-47654390 | None:intergenic |
GAAGGCGCCTTTAGTAGAGG+CGG | 0.708805 | 1_2:+47653735 | Msa0073780:CDS |
CACAGAATGAGAATCAAATG+GGG | 0.710437 | 1_2:+47653545 | Msa0073780:CDS |
GGTCATGCTGAACATGCATG+TGG | 0.714823 | 1_2:+47652929 | Msa0073780:CDS |
TTTATAGAGGAACACCGAGG+CGG | 0.715637 | 1_2:+47653320 | Msa0073780:CDS |
GACCTGCCTGAACTTTACTG+AGG | 0.725533 | 1_2:-47654512 | None:intergenic |
TCGGCCGCGTAATCCAAACG+AGG | 0.730598 | 1_2:-47653235 | None:intergenic |
GTAACTTCACAAGAACAGCA+AGG | 0.734687 | 1_2:+47655267 | Msa0073780:intron |
ACTTCACAAGAACAGCAAGG+AGG | 0.777122 | 1_2:+47655270 | Msa0073780:CDS |
ATATTTATAGAGGAACACCG+AGG | 0.862150 | 1_2:+47653317 | Msa0073780:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATATAAGAAAAAAAGAAA+AGG | - | chr1_2:47652091-47652110 | None:intergenic | 10.0% |
!! | ACATCAAATTTAATAAAATA+TGG | - | chr1_2:47653919-47653938 | None:intergenic | 10.0% |
!!! | GAACAGAATTTTTTTTTTTT+TGG | + | chr1_2:47652284-47652303 | Msa0073780:five_prime_UTR | 15.0% |
!!! | AGAATTTTTTTTTTTTTGGT+GGG | + | chr1_2:47652288-47652307 | Msa0073780:five_prime_UTR | 15.0% |
!! | ATCAATTCTATTACTTAATT+TGG | + | chr1_2:47652707-47652726 | Msa0073780:intron | 15.0% |
!! | TTTGAAGATGAATATATTTA+TGG | + | chr1_2:47652769-47652788 | Msa0073780:CDS | 15.0% |
!!! | AGTTTTATCTATTAAGTATA+TGG | + | chr1_2:47653003-47653022 | Msa0073780:CDS | 15.0% |
!! | AATTGCATAATACTTAAATA+TGG | + | chr1_2:47653956-47653975 | Msa0073780:intron | 15.0% |
!! | TAAAAGTAAACAAAAGTCAT+TGG | + | chr1_2:47651861-47651880 | Msa0073780:five_prime_UTR | 20.0% |
!!! | CAGAATTTTTTTTTTTTTGG+TGG | + | chr1_2:47652287-47652306 | Msa0073780:five_prime_UTR | 20.0% |
!!! | ATTTCAAATTTTGATGAACA+TGG | + | chr1_2:47652330-47652349 | Msa0073780:five_prime_UTR | 20.0% |
!! | GAACAATTAAATATCTCAAA+GGG | - | chr1_2:47652362-47652381 | None:intergenic | 20.0% |
!! | TGAACAATTAAATATCTCAA+AGG | - | chr1_2:47652363-47652382 | None:intergenic | 20.0% |
!! | ATTTAATTGTTCAAGACATT+AGG | + | chr1_2:47652370-47652389 | Msa0073780:five_prime_UTR | 20.0% |
!! | TTAATAGATAAAACTTTGCA+TGG | - | chr1_2:47652998-47653017 | None:intergenic | 20.0% |
!! | ATTAACAACAACAATAACAA+TGG | + | chr1_2:47653574-47653593 | Msa0073780:CDS | 20.0% |
!! | TCATTAATTTAGTAATCAAG+TGG | - | chr1_2:47654054-47654073 | None:intergenic | 20.0% |
!! | TTTGTATGATTTCATTTGAT+AGG | + | chr1_2:47654137-47654156 | Msa0073780:intron | 20.0% |
!!! | GTAGTATTATGATATTTTGT+AGG | + | chr1_2:47654197-47654216 | Msa0073780:intron | 20.0% |
!!! | ATGATATTTTGTAGGTTAAA+TGG | + | chr1_2:47654205-47654224 | Msa0073780:intron | 20.0% |
!!! | TGATATTTTGTAGGTTAAAT+GGG | + | chr1_2:47654206-47654225 | Msa0073780:intron | 20.0% |
!!! | TGATCTAATTTTTGAATGTT+TGG | + | chr1_2:47655389-47655408 | Msa0073780:three_prime_UTR | 20.0% |
!! | AAGCAAAGTTAAAAAAACAA+AGG | - | chr1_2:47655443-47655462 | None:intergenic | 20.0% |
! | ATTTAGAAAAGAGAATCTTG+AGG | - | chr1_2:47652064-47652083 | None:intergenic | 25.0% |
!! | TTTTCATTGTGTCAATGTTT+TGG | + | chr1_2:47652394-47652413 | Msa0073780:five_prime_UTR | 25.0% |
! | TCATAAATTGCAACTTTACT+TGG | + | chr1_2:47652624-47652643 | Msa0073780:intron | 25.0% |
! | AAAGTTTATTACTTTCCTCA+AGG | + | chr1_2:47652908-47652927 | Msa0073780:CDS | 25.0% |
! | AAGTTTAGGCATATTTATAG+AGG | + | chr1_2:47653307-47653326 | Msa0073780:CDS | 25.0% |
! | ATTTCATTTGATAGGATCAT+AGG | + | chr1_2:47654145-47654164 | Msa0073780:intron | 25.0% |
! | ATTTACTGCAAAATGTAAGA+AGG | + | chr1_2:47654238-47654257 | Msa0073780:CDS | 25.0% |
! | TTTACTGCAAAATGTAAGAA+GGG | + | chr1_2:47654239-47654258 | Msa0073780:CDS | 25.0% |
!!! | TGCTATATTTTTGCATCATT+AGG | - | chr1_2:47654599-47654618 | None:intergenic | 25.0% |
! | AGATGGAAATACCAATAAAA+TGG | + | chr1_2:47654761-47654780 | Msa0073780:CDS | 25.0% |
! | GATGGAAATACCAATAAAAT+GGG | + | chr1_2:47654762-47654781 | Msa0073780:CDS | 25.0% |
!! | GGAAAAATTACCCATTTTAT+TGG | - | chr1_2:47654775-47654794 | None:intergenic | 25.0% |
! | TGAAATGTATTGTGAAATTC+AGG | - | chr1_2:47655126-47655145 | None:intergenic | 25.0% |
!!! | AATAAGCATTGACTTATTTG+AGG | - | chr1_2:47655227-47655246 | None:intergenic | 25.0% |
AATTCAAAGGAAAGAGATGA+TGG | - | chr1_2:47652034-47652053 | None:intergenic | 30.0% | |
!! | CTTCTCTTCATTTTTATGCT+TGG | + | chr1_2:47652183-47652202 | Msa0073780:five_prime_UTR | 30.0% |
!!! | TCTGTTCTGTTTTTTAACAG+AGG | - | chr1_2:47652271-47652290 | None:intergenic | 30.0% |
! | GTGATCATATATGACTTTTC+AGG | + | chr1_2:47652590-47652609 | Msa0073780:exon | 30.0% |
!! | CTTGGTCTTTTAATTCATTG+TGG | + | chr1_2:47652642-47652661 | Msa0073780:intron | 30.0% |
ATTCATCAGAAGAAGTTGAA+AGG | + | chr1_2:47652819-47652838 | Msa0073780:CDS | 30.0% | |
TAAACTTTACTGTTCACTGT+TGG | - | chr1_2:47652896-47652915 | None:intergenic | 30.0% | |
TAACTTCATGAATTGTCCAA+AGG | + | chr1_2:47652958-47652977 | Msa0073780:CDS | 30.0% | |
AAAACTTTGCATGGAATCAA+AGG | - | chr1_2:47652989-47653008 | None:intergenic | 30.0% | |
AATGTCTTTGCAAATGAAAC+AGG | - | chr1_2:47653148-47653167 | None:intergenic | 30.0% | |
!!! | ATTTTGGCTAAAGATGTTCA+TGG | + | chr1_2:47653274-47653293 | Msa0073780:CDS | 30.0% |
AAAATGGTGATCTTTGTGTT+GGG | + | chr1_2:47653425-47653444 | Msa0073780:CDS | 30.0% | |
TACACAGAATGAGAATCAAA+TGG | + | chr1_2:47653543-47653562 | Msa0073780:CDS | 30.0% | |
ACACAGAATGAGAATCAAAT+GGG | + | chr1_2:47653544-47653563 | Msa0073780:CDS | 30.0% | |
AATAACAATGGTTTGAACTC+AGG | + | chr1_2:47653586-47653605 | Msa0073780:CDS | 30.0% | |
!! | TTCTGGAATAAGATTCAAGA+TGG | + | chr1_2:47653777-47653796 | Msa0073780:CDS | 30.0% |
!! | TCTCGAATAAGTTGGTTTAT+GGG | + | chr1_2:47653820-47653839 | Msa0073780:CDS | 30.0% |
! | AACAGAAGCACATTCTTAAA+TGG | - | chr1_2:47654098-47654117 | None:intergenic | 30.0% |
GAAATCATACAAAACTCAAC+TGG | - | chr1_2:47654130-47654149 | None:intergenic | 30.0% | |
! | CTTACATTTTGCAGTAAATC+TGG | - | chr1_2:47654237-47654256 | None:intergenic | 30.0% |
ATTAGGTTATTAGAGACACT+AGG | - | chr1_2:47654582-47654601 | None:intergenic | 30.0% | |
! | AAAATGGGTAATTTTTCCGA+TGG | + | chr1_2:47654777-47654796 | Msa0073780:CDS | 30.0% |
ACAATTGACCTTTCTTTACT+TGG | + | chr1_2:47654951-47654970 | Msa0073780:CDS | 30.0% | |
CATAAGATCCAAGTAAAGAA+AGG | - | chr1_2:47654962-47654981 | None:intergenic | 30.0% | |
TGGCATAGAAAAATATGAGA+AGG | + | chr1_2:47655013-47655032 | Msa0073780:CDS | 30.0% | |
ATGTATTGTGAAATTCAGGA+GGG | - | chr1_2:47655122-47655141 | None:intergenic | 30.0% | |
AATGTATTGTGAAATTCAGG+AGG | - | chr1_2:47655123-47655142 | None:intergenic | 30.0% | |
GCTGTACAAAATTGAAAGAA+TGG | - | chr1_2:47655327-47655346 | None:intergenic | 30.0% | |
! | TTCTTTCAATTTTGTACAGC+TGG | + | chr1_2:47655327-47655346 | Msa0073780:three_prime_UTR | 30.0% |
! | TTGAGGTGGATTCAATTCAA+AGG | - | chr1_2:47652047-47652066 | None:intergenic | 35.0% |
TAGAAAAGAGAATCTTGAGG+TGG | - | chr1_2:47652061-47652080 | None:intergenic | 35.0% | |
! | TTCTGAATTTTGTTGACACG+TGG | + | chr1_2:47652533-47652552 | Msa0073780:five_prime_UTR | 35.0% |
! | CAATTTTCTTCTTGTTCCAG+CGG | + | chr1_2:47652560-47652579 | Msa0073780:five_prime_UTR | 35.0% |
GGACAATTCATGAAGTTAAC+AGG | - | chr1_2:47652956-47652975 | None:intergenic | 35.0% | |
! | TAAGCTTAAGCTTGTTCCTT+TGG | + | chr1_2:47653054-47653073 | Msa0073780:CDS | 35.0% |
! | AAGCTTAAGCTTGTTCCTTT+GGG | + | chr1_2:47653055-47653074 | Msa0073780:CDS | 35.0% |
ACTCAATCTGATGCTAACAA+TGG | + | chr1_2:47653169-47653188 | Msa0073780:CDS | 35.0% | |
!! | TTAGCCAAAATGTTCTGAAG+AGG | - | chr1_2:47653265-47653284 | None:intergenic | 35.0% |
ATATTTATAGAGGAACACCG+AGG | + | chr1_2:47653317-47653336 | Msa0073780:CDS | 35.0% | |
!! | TTCGATTGTGTTTTTGAGAG+CGG | + | chr1_2:47653402-47653421 | Msa0073780:CDS | 35.0% |
GAAAATGGTGATCTTTGTGT+TGG | + | chr1_2:47653424-47653443 | Msa0073780:CDS | 35.0% | |
ATGAGGATCCATTACCATTA+GGG | + | chr1_2:47653482-47653501 | Msa0073780:CDS | 35.0% | |
! | AGAGGAAAATTTTCTCCAAC+AGG | - | chr1_2:47653514-47653533 | None:intergenic | 35.0% |
! | GAGAAAATTTTCCTCTTCCT+TGG | + | chr1_2:47653518-47653537 | Msa0073780:CDS | 35.0% |
TTCTCATTCTGTGTAAACCA+AGG | - | chr1_2:47653538-47653557 | None:intergenic | 35.0% | |
CACAGAATGAGAATCAAATG+GGG | + | chr1_2:47653545-47653564 | Msa0073780:CDS | 35.0% | |
GGGTAGTAAATAACCTCAAA+CGG | - | chr1_2:47653688-47653707 | None:intergenic | 35.0% | |
!! | GTCTCGAATAAGTTGGTTTA+TGG | + | chr1_2:47653819-47653838 | Msa0073780:CDS | 35.0% |
TGGTTTATGGGAATTGTATC+TGG | + | chr1_2:47653832-47653851 | Msa0073780:CDS | 35.0% | |
AAAGGTGAAAGGTTTATGGA+TGG | - | chr1_2:47654300-47654319 | None:intergenic | 35.0% | |
TGAGAAAGGTGAAAGGTTTA+TGG | - | chr1_2:47654304-47654323 | None:intergenic | 35.0% | |
GACAATCTCAATTTCTTCCT+TGG | - | chr1_2:47654330-47654349 | None:intergenic | 35.0% | |
TCATTATGGTCTTCCGATAT+CGG | + | chr1_2:47654482-47654501 | Msa0073780:CDS | 35.0% | |
AGTTTAGCAGCATGATCAAA+AGG | - | chr1_2:47654558-47654577 | None:intergenic | 35.0% | |
!! | AAACCTCAGCTTGTTCTTTT+CGG | + | chr1_2:47654693-47654712 | Msa0073780:CDS | 35.0% |
!! | GTCATTAGAGATTTGTTGCT+CGG | - | chr1_2:47654733-47654752 | None:intergenic | 35.0% |
TCTAATGACCATTCATCAGA+TGG | + | chr1_2:47654744-47654763 | Msa0073780:CDS | 35.0% | |
TGGTATTTCCATCTGATGAA+TGG | - | chr1_2:47654755-47654774 | None:intergenic | 35.0% | |
TGAGAGTTTCCAATGGTATA+AGG | + | chr1_2:47654848-47654867 | Msa0073780:CDS | 35.0% | |
TTTCTCGAATCAGAAGATGT+CGG | + | chr1_2:47654924-47654943 | Msa0073780:CDS | 35.0% | |
GTTTGTGATTCTTACCTGAA+TGG | - | chr1_2:47655095-47655114 | None:intergenic | 35.0% | |
TCATATCTTTAGACCCTTTC+TGG | + | chr1_2:47655146-47655165 | Msa0073780:intron | 35.0% | |
CATATCTTTAGACCCTTTCT+GGG | + | chr1_2:47655147-47655166 | Msa0073780:intron | 35.0% | |
TTACGAAAACAACCCAGAAA+GGG | - | chr1_2:47655162-47655181 | None:intergenic | 35.0% | |
AAGGAGGTTGACTATTCTAA+TGG | + | chr1_2:47655286-47655305 | Msa0073780:CDS | 35.0% | |
!!! | GTTAGTTTTCGTGTGTTGTG+TGG | + | chr1_2:47651902-47651921 | Msa0073780:five_prime_UTR | 40.0% |
! | TCATTGTGCGTGTATGCTTT+TGG | + | chr1_2:47651925-47651944 | Msa0073780:five_prime_UTR | 40.0% |
AGAGAGAGACAGTTTATGGA+TGG | - | chr1_2:47651975-47651994 | None:intergenic | 40.0% | |
AGAGAGAGAGAGACAGTTTA+TGG | - | chr1_2:47651979-47651998 | None:intergenic | 40.0% | |
!!! | GTGTCAATGTTTTGGAGACA+AGG | + | chr1_2:47652402-47652421 | Msa0073780:five_prime_UTR | 40.0% |
GGTGTTTAGATCCTCAACTA+TGG | + | chr1_2:47652840-47652859 | Msa0073780:CDS | 40.0% | |
GGAATCAAAGGTGAAACCTT+TGG | - | chr1_2:47652977-47652996 | None:intergenic | 40.0% | |
GCATAAACCTCATCTGTTTC+AGG | - | chr1_2:47653034-47653053 | None:intergenic | 40.0% | |
CAATCTGATGCTAACAATGG+TGG | + | chr1_2:47653172-47653191 | Msa0073780:CDS | 40.0% | |
!! | CCAAAATGTTCTGAAGAGGA+GGG | - | chr1_2:47653261-47653280 | None:intergenic | 40.0% |
AATCACAAGAAGCTTCTTGC+CGG | + | chr1_2:47653376-47653395 | Msa0073780:CDS | 40.0% | |
CAAAAACACAATCGAATCCC+CGG | - | chr1_2:47653398-47653417 | None:intergenic | 40.0% | |
!! | GTGTTTTTGAGAGCGGAAAA+TGG | + | chr1_2:47653409-47653428 | Msa0073780:CDS | 40.0% |
CATGAGGATCCATTACCATT+AGG | + | chr1_2:47653481-47653500 | Msa0073780:CDS | 40.0% | |
TTCTGTGTAAACCAAGGAAG+AGG | - | chr1_2:47653532-47653551 | None:intergenic | 40.0% | |
ACTTATTCGAGACGAATCCT+CGG | - | chr1_2:47653812-47653831 | None:intergenic | 40.0% | |
AGGATTCGTCTCGAATAAGT+TGG | + | chr1_2:47653812-47653831 | Msa0073780:CDS | 40.0% | |
GCTACTAATTCAACCAACCA+TGG | - | chr1_2:47654270-47654289 | None:intergenic | 40.0% | |
TTGGTTGTGAGAAAGGTGAA+AGG | - | chr1_2:47654311-47654330 | None:intergenic | 40.0% | |
TTTCACCTTTCTCACAACCA+AGG | + | chr1_2:47654310-47654329 | Msa0073780:CDS | 40.0% | |
TTCTTCCTTGGTTGTGAGAA+AGG | - | chr1_2:47654318-47654337 | None:intergenic | 40.0% | |
! | GAAACGATGGCACTGAAATT+TGG | - | chr1_2:47654380-47654399 | None:intergenic | 40.0% |
AGAAGGTTACTAGGAAACGA+TGG | - | chr1_2:47654393-47654412 | None:intergenic | 40.0% | |
TCGTTTCCTAGTAACCTTCT+AGG | + | chr1_2:47654393-47654412 | Msa0073780:CDS | 40.0% | |
! | ATGATCAAAAGGCACGAAAC+CGG | - | chr1_2:47654547-47654566 | None:intergenic | 40.0% |
TGTCTCTTGCTTACTATCCA+TGG | + | chr1_2:47654629-47654648 | Msa0073780:CDS | 40.0% | |
!!! | GTTGCTCGGTGAGAATTTTT+TGG | - | chr1_2:47654719-47654738 | None:intergenic | 40.0% |
! | GGGTAATTTTTCCGATGGTT+CGG | + | chr1_2:47654782-47654801 | Msa0073780:CDS | 40.0% |
! | GGTAATTTTTCCGATGGTTC+GGG | + | chr1_2:47654783-47654802 | Msa0073780:CDS | 40.0% |
TAAGGATAACCGCGAAGAAA+CGG | + | chr1_2:47654866-47654885 | Msa0073780:CDS | 40.0% | |
TGATGAACTGTACAGAAAGC+TGG | + | chr1_2:47654980-47654999 | Msa0073780:CDS | 40.0% | |
TGACTGCTCCAGATATATCA+CGG | - | chr1_2:47655055-47655074 | None:intergenic | 40.0% | |
CTTACGAAAACAACCCAGAA+AGG | - | chr1_2:47655163-47655182 | None:intergenic | 40.0% | |
GTAACTTCACAAGAACAGCA+AGG | + | chr1_2:47655267-47655286 | Msa0073780:intron | 40.0% | |
ATCCTCCATTGAGCAATAGA+AGG | + | chr1_2:47655358-47655377 | Msa0073780:three_prime_UTR | 40.0% | |
GGATGGATGATGCAATGCAA+TGG | - | chr1_2:47651958-47651977 | None:intergenic | 45.0% | |
AAGAGAAGCAGTGAGCAACT+GGG | + | chr1_2:47652502-47652521 | Msa0073780:five_prime_UTR | 45.0% | |
TATGATCACACAGTAACCGC+TGG | - | chr1_2:47652579-47652598 | None:intergenic | 45.0% | |
! | CTTAAGCTTGTTCCTTTGGG+TGG | + | chr1_2:47653058-47653077 | Msa0073780:CDS | 45.0% |
CTTGTTCCTTTGGGTGGAAA+TGG | + | chr1_2:47653064-47653083 | Msa0073780:CDS | 45.0% | |
CCATTACCATTTCCACCCAA+AGG | - | chr1_2:47653073-47653092 | None:intergenic | 45.0% | |
CCTTTGGGTGGAAATGGTAA+TGG | + | chr1_2:47653070-47653089 | Msa0073780:CDS | 45.0% | |
GCTGCAGATTATGACACTGT+TGG | + | chr1_2:47653100-47653119 | Msa0073780:CDS | 45.0% | |
GCAGATTATGACACTGTTGG+AGG | + | chr1_2:47653103-47653122 | Msa0073780:CDS | 45.0% | |
TCTGATGCTAACAATGGTGG+AGG | + | chr1_2:47653175-47653194 | Msa0073780:CDS | 45.0% | |
! | GTGGAGGTTTTTCTGTTCCT+AGG | + | chr1_2:47653191-47653210 | Msa0073780:CDS | 45.0% |
ATCGTCTCAGCACAATACCT+AGG | - | chr1_2:47653211-47653230 | None:intergenic | 45.0% | |
! | TGAGACGATTTTCCCTCGTT+TGG | + | chr1_2:47653222-47653241 | Msa0073780:CDS | 45.0% |
TTTCCCTCGTTTGGATTACG+CGG | + | chr1_2:47653231-47653250 | Msa0073780:CDS | 45.0% | |
!! | AATGTTCTGAAGAGGAGGGT+CGG | - | chr1_2:47653257-47653276 | None:intergenic | 45.0% |
! | CCCTCCTCTTCAGAACATTT+TGG | + | chr1_2:47653258-47653277 | Msa0073780:CDS | 45.0% |
!! | GCCAAAATGTTCTGAAGAGG+AGG | - | chr1_2:47653262-47653281 | None:intergenic | 45.0% |
TTTATAGAGGAACACCGAGG+CGG | + | chr1_2:47653320-47653339 | Msa0073780:CDS | 45.0% | |
!! | GGCATCTTTTGACTACTGGT+TGG | + | chr1_2:47653341-47653360 | Msa0073780:CDS | 45.0% |
ATCACAAGAAGCTTCTTGCC+GGG | + | chr1_2:47653377-47653396 | Msa0073780:CDS | 45.0% | |
AGGATCCATTACCATTAGGG+TGG | + | chr1_2:47653485-47653504 | Msa0073780:CDS | 45.0% | |
GGATTCCACCCTAATGGTAA+TGG | - | chr1_2:47653493-47653512 | None:intergenic | 45.0% | |
GAATATGACTGGGAGGGAAA+AGG | + | chr1_2:47653612-47653631 | Msa0073780:CDS | 45.0% | |
CCTTCAAGCGGTAACTTTAG+CGG | + | chr1_2:47653651-47653670 | Msa0073780:CDS | 45.0% | |
GGCTAATAAGCAACCGTTTG+AGG | + | chr1_2:47653672-47653691 | Msa0073780:CDS | 45.0% | |
!! | TACGCCAGAGTTTTGTGTGA+AGG | + | chr1_2:47653717-47653736 | Msa0073780:CDS | 45.0% |
ATGCAGATTCGATGGTGTTC+TGG | + | chr1_2:47653760-47653779 | Msa0073780:CDS | 45.0% | |
AGACGAATCCTCGGTTTCAA+AGG | - | chr1_2:47653803-47653822 | None:intergenic | 45.0% | |
!! | AGTTTGTTGATCCCCTTCTC+TGG | + | chr1_2:47653860-47653879 | Msa0073780:CDS | 45.0% |
AGGTGAATTAGGCCAGAGAA+GGG | - | chr1_2:47653875-47653894 | None:intergenic | 45.0% | |
AAGGTGAATTAGGCCAGAGA+AGG | - | chr1_2:47653876-47653895 | None:intergenic | 45.0% | |
TTCTCTGGCCTAATTCACCT+TGG | + | chr1_2:47653875-47653894 | Msa0073780:CDS | 45.0% | |
AGAAGCCTCCAAGGTGAATT+AGG | - | chr1_2:47653886-47653905 | None:intergenic | 45.0% | |
ATGTAAGAAGGGTGAGTCCA+TGG | + | chr1_2:47654250-47654269 | Msa0073780:CDS | 45.0% | |
CTCTGACCTAGAAGGTTACT+AGG | - | chr1_2:47654402-47654421 | None:intergenic | 45.0% | |
ATAGGTTGCTCTGACCTAGA+AGG | - | chr1_2:47654410-47654429 | None:intergenic | 45.0% | |
! | TTTCGGGTAGACAACGGAAT+AGG | - | chr1_2:47654428-47654447 | None:intergenic | 45.0% |
! | GAGTACTTTCGGGTAGACAA+CGG | - | chr1_2:47654434-47654453 | None:intergenic | 45.0% |
AAGACCATAATGAGCATGCC+TGG | - | chr1_2:47654475-47654494 | None:intergenic | 45.0% | |
TCTCCACCTCAGTAAAGTTC+AGG | + | chr1_2:47654506-47654525 | Msa0073780:CDS | 45.0% | |
AGTTCAGGCAGGTCTATTTC+CGG | + | chr1_2:47654521-47654540 | Msa0073780:CDS | 45.0% | |
AGACTGAGTAGAACTTGCCA+TGG | - | chr1_2:47654649-47654668 | None:intergenic | 45.0% | |
!! | GGTAAGACTTGTTGATGACG+AGG | - | chr1_2:47654813-47654832 | None:intergenic | 45.0% |
CCATTGGAAACTCTCACTAG+AGG | - | chr1_2:47654844-47654863 | None:intergenic | 45.0% | |
CCTCTAGTGAGAGTTTCCAA+TGG | + | chr1_2:47654841-47654860 | Msa0073780:CDS | 45.0% | |
CGCGGTTATCCTTATACCAT+TGG | - | chr1_2:47654860-47654879 | None:intergenic | 45.0% | |
! | AACTTGCTTCCGTTTCTTCG+CGG | - | chr1_2:47654878-47654897 | None:intergenic | 45.0% |
CGAAGAAACGGAAGCAAGTT+TGG | + | chr1_2:47654878-47654897 | Msa0073780:CDS | 45.0% | |
GGAAGCAAGTTTGGAGAGTA+CGG | + | chr1_2:47654887-47654906 | Msa0073780:CDS | 45.0% | |
TCGAATCAGAAGATGTCGGT+CGG | + | chr1_2:47654928-47654947 | Msa0073780:CDS | 45.0% | |
AGAAAGCTGGCAGACATGTT+TGG | + | chr1_2:47654993-47655012 | Msa0073780:CDS | 45.0% | |
GTGCTCTACCGTGATATATC+TGG | + | chr1_2:47655044-47655063 | Msa0073780:CDS | 45.0% | |
! | TCTGGAGCAGTCAAACACAT+TGG | + | chr1_2:47655062-47655081 | Msa0073780:CDS | 45.0% |
AGCAGTCAAACACATTGGAG+AGG | + | chr1_2:47655067-47655086 | Msa0073780:CDS | 45.0% | |
ACATTGGAGAGGAACCATTC+AGG | + | chr1_2:47655078-47655097 | Msa0073780:CDS | 45.0% | |
ACTTCACAAGAACAGCAAGG+AGG | + | chr1_2:47655270-47655289 | Msa0073780:CDS | 45.0% | |
CTCCTTCTATTGCTCAATGG+AGG | - | chr1_2:47655363-47655382 | None:intergenic | 45.0% | |
CTCCATTGAGCAATAGAAGG+AGG | + | chr1_2:47655361-47655380 | Msa0073780:three_prime_UTR | 45.0% | |
TGCCTCCTTCTATTGCTCAA+TGG | - | chr1_2:47655366-47655385 | None:intergenic | 45.0% | |
TCTCTGCACTGCATCCATGT+CGG | + | chr1_2:47652008-47652027 | Msa0073780:five_prime_UTR | 50.0% | |
! | GAAAGAGATGATGGCCGACA+TGG | - | chr1_2:47652025-47652044 | None:intergenic | 50.0% |
GAAGAGAAGCAGTGAGCAAC+TGG | + | chr1_2:47652501-47652520 | Msa0073780:five_prime_UTR | 50.0% | |
GCACAAGCATGCCATAGTTG+AGG | - | chr1_2:47652854-47652873 | None:intergenic | 50.0% | |
CAACTATGGCATGCTTGTGC+AGG | + | chr1_2:47652854-47652873 | Msa0073780:CDS | 50.0% | |
GCATGTTCAGCATGACCTTG+AGG | - | chr1_2:47652926-47652945 | None:intergenic | 50.0% | |
GGTCATGCTGAACATGCATG+TGG | + | chr1_2:47652929-47652948 | Msa0073780:CDS | 50.0% | |
GGCTGATCCTGAAACAGATG+AGG | + | chr1_2:47653024-47653043 | Msa0073780:CDS | 50.0% | |
AAGATGTTCATGGCGAGACG+TGG | + | chr1_2:47653284-47653303 | Msa0073780:CDS | 50.0% | |
ATGGCGAGACGTGGAAGTTT+AGG | + | chr1_2:47653293-47653312 | Msa0073780:CDS | 50.0% | |
GTAGTCAAAAGATGCCGCCT+CGG | - | chr1_2:47653337-47653356 | None:intergenic | 50.0% | |
!! | AGGCGGCATCTTTTGACTAC+TGG | + | chr1_2:47653337-47653356 | Msa0073780:CDS | 50.0% |
TCACAAGAAGCTTCTTGCCG+GGG | + | chr1_2:47653378-47653397 | Msa0073780:CDS | 50.0% | |
CCAACAGGATTCCACCCTAA+TGG | - | chr1_2:47653499-47653518 | None:intergenic | 50.0% | |
CCATTAGGGTGGAATCCTGT+TGG | + | chr1_2:47653496-47653515 | Msa0073780:CDS | 50.0% | |
AACTCAGGCGCGAATATGAC+TGG | + | chr1_2:47653601-47653620 | Msa0073780:CDS | 50.0% | |
ACTCAGGCGCGAATATGACT+GGG | + | chr1_2:47653602-47653621 | Msa0073780:CDS | 50.0% | |
TGACTGGGAGGGAAAAGGTT+AGG | + | chr1_2:47653617-47653636 | Msa0073780:CDS | 50.0% | |
GGAAAAGGTTAGGCCAGAAG+CGG | + | chr1_2:47653627-47653646 | Msa0073780:CDS | 50.0% | |
CCGCTAAAGTTACCGCTTGA+AGG | - | chr1_2:47653654-47653673 | None:intergenic | 50.0% | |
!! | TGTGAAGGCGCCTTTAGTAG+AGG | + | chr1_2:47653732-47653751 | Msa0073780:CDS | 50.0% |
TGCATTGCCGCCTCTACTAA+AGG | - | chr1_2:47653745-47653764 | None:intergenic | 50.0% | |
!! | CAAGATGGCCTTTGAAACCG+AGG | + | chr1_2:47653792-47653811 | Msa0073780:CDS | 50.0% |
GGTGAATTAGGCCAGAGAAG+GGG | - | chr1_2:47653874-47653893 | None:intergenic | 50.0% | |
TCTGGCCTAATTCACCTTGG+AGG | + | chr1_2:47653878-47653897 | Msa0073780:CDS | 50.0% | |
TTCACCTTGGAGGCTTCTTC+AGG | + | chr1_2:47653888-47653907 | Msa0073780:CDS | 50.0% | |
GTTACCTGAAGAAGCCTCCA+AGG | - | chr1_2:47653895-47653914 | None:intergenic | 50.0% | |
AAGAAGGGTGAGTCCATGGT+TGG | + | chr1_2:47654254-47654273 | Msa0073780:CDS | 50.0% | |
ACTGAAATTTGGCCGTCGAG+GGG | - | chr1_2:47654369-47654388 | None:intergenic | 50.0% | |
CACTGAAATTTGGCCGTCGA+GGG | - | chr1_2:47654370-47654389 | None:intergenic | 50.0% | |
!! | ATGCCAGCAGGAGTACTTTC+GGG | - | chr1_2:47654444-47654463 | None:intergenic | 50.0% |
!! | CATGCCAGCAGGAGTACTTT+CGG | - | chr1_2:47654445-47654464 | None:intergenic | 50.0% |
CTGAGGTGGAGATCCGATAT+CGG | - | chr1_2:47654498-47654517 | None:intergenic | 50.0% | |
CTGCCTGAACTTTACTGAGG+TGG | - | chr1_2:47654512-47654531 | None:intergenic | 50.0% | |
CACCTCAGTAAAGTTCAGGC+AGG | + | chr1_2:47654510-47654529 | Msa0073780:CDS | 50.0% | |
GACCTGCCTGAACTTTACTG+AGG | - | chr1_2:47654515-47654534 | None:intergenic | 50.0% | |
TGGCCGAAAAGAACAAGCTG+AGG | - | chr1_2:47654699-47654718 | None:intergenic | 50.0% | |
!!! | CTCTCACTAGAGGAGCGTTT+TGG | - | chr1_2:47654834-47654853 | None:intergenic | 50.0% |
CTATGGCATGCTTGTGCAGG+TGG | + | chr1_2:47652857-47652876 | Msa0073780:CDS | 55.0% | |
GCATGCTTGTGCAGGTGGAA+TGG | + | chr1_2:47652862-47652881 | Msa0073780:CDS | 55.0% | |
TGGGATTCGACGAGCGAAGA+AGG | + | chr1_2:47653444-47653463 | Msa0073780:CDS | 55.0% | |
GGGATTCGACGAGCGAAGAA+GGG | + | chr1_2:47653445-47653464 | Msa0073780:CDS | 55.0% | |
! | CGACGAGCGAAGAAGGGTAT+TGG | + | chr1_2:47653451-47653470 | Msa0073780:CDS | 55.0% |
!! | CGAGCGAAGAAGGGTATTGG+TGG | + | chr1_2:47653454-47653473 | Msa0073780:CDS | 55.0% |
!! | GCGAAGAAGGGTATTGGTGG+TGG | + | chr1_2:47653457-47653476 | Msa0073780:CDS | 55.0% |
!! | GGGTATTGGTGGTGGACATG+AGG | + | chr1_2:47653465-47653484 | Msa0073780:CDS | 55.0% |
AGGCGCGAATATGACTGGGA+GGG | + | chr1_2:47653606-47653625 | Msa0073780:CDS | 55.0% | |
GGCGCCTTCACACAAAACTC+TGG | - | chr1_2:47653724-47653743 | None:intergenic | 55.0% | |
!! | GAAGGCGCCTTTAGTAGAGG+CGG | + | chr1_2:47653735-47653754 | Msa0073780:CDS | 55.0% |
AGGCGGCAATGCAGATTCGA+TGG | + | chr1_2:47653752-47653771 | Msa0073780:CDS | 55.0% | |
ACGCGTAATGCACAGTGCGA+AGG | - | chr1_2:47654018-47654037 | None:intergenic | 55.0% | |
CTGAAATTTGGCCGTCGAGG+GGG | - | chr1_2:47654368-47654387 | None:intergenic | 55.0% | |
GCACTGAAATTTGGCCGTCG+AGG | - | chr1_2:47654371-47654390 | None:intergenic | 55.0% | |
!! | CTACCCGAAAGTACTCCTGC+TGG | + | chr1_2:47654438-47654457 | Msa0073780:CDS | 55.0% |
AAGTACTCCTGCTGGCATGC+AGG | + | chr1_2:47654446-47654465 | Msa0073780:CDS | 55.0% | |
AGTACTCCTGCTGGCATGCA+GGG | + | chr1_2:47654447-47654466 | Msa0073780:CDS | 55.0% | |
GGAGCCAGGCATGCTCATTA+TGG | + | chr1_2:47654468-47654487 | Msa0073780:CDS | 55.0% | |
! | TCAAAAGGCACGAAACCGGC+CGG | - | chr1_2:47654543-47654562 | None:intergenic | 55.0% |
ACGAGGAGTTCCCGAACCAT+CGG | - | chr1_2:47654796-47654815 | None:intergenic | 55.0% | |
CGGCCGCGTAATCCAAACGA+GGG | - | chr1_2:47653237-47653256 | None:intergenic | 60.0% | |
TCGGCCGCGTAATCCAAACG+AGG | - | chr1_2:47653238-47653257 | None:intergenic | 60.0% | |
CAGGCGCGAATATGACTGGG+AGG | + | chr1_2:47653605-47653624 | Msa0073780:CDS | 60.0% | |
GCCAGAAGCGGTCCTTCAAG+CGG | + | chr1_2:47653639-47653658 | Msa0073780:CDS | 60.0% | |
ACCGCTTGAAGGACCGCTTC+TGG | - | chr1_2:47653643-47653662 | None:intergenic | 60.0% | |
ACTCTGGCGTACTTGCGCGA+GGG | - | chr1_2:47653708-47653727 | None:intergenic | 60.0% | |
AACTCTGGCGTACTTGCGCG+AGG | - | chr1_2:47653709-47653728 | None:intergenic | 60.0% | |
TCGAGGGGGAAATCGTGGTG+TGG | - | chr1_2:47654354-47654373 | None:intergenic | 60.0% | |
CACCACGATTTCCCCCTCGA+CGG | + | chr1_2:47654354-47654373 | Msa0073780:CDS | 60.0% | |
CAGGCAGGTCTATTTCCGGC+CGG | + | chr1_2:47654525-47654544 | Msa0073780:CDS | 60.0% | |
GGCCGTCGAGGGGGAAATCG+TGG | - | chr1_2:47654359-47654378 | None:intergenic | 70.0% | |
CTGGCTCCCTGCATGCCAGC+AGG | - | chr1_2:47654456-47654475 | None:intergenic | 70.0% | |
CTGCTGGCATGCAGGGAGCC+AGG | + | chr1_2:47654454-47654473 | Msa0073780:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 47651845 | 47655503 | 47651845 | ID=Msa0073780;Name=Msa0073780 |
chr1_2 | mRNA | 47651845 | 47655503 | 47651845 | ID=Msa0073780-mRNA-1;Parent=Msa0073780;Name=Msa0073780-mRNA-1;_AED=0.00;_eAED=0.00;_QI=755|1|1|1|0.66|0.5|4|181|702 |
chr1_2 | exon | 47651845 | 47652611 | 47651845 | ID=Msa0073780-mRNA-1:exon:14517;Parent=Msa0073780-mRNA-1 |
chr1_2 | exon | 47652749 | 47653909 | 47652749 | ID=Msa0073780-mRNA-1:exon:14518;Parent=Msa0073780-mRNA-1 |
chr1_2 | exon | 47654219 | 47655099 | 47654219 | ID=Msa0073780-mRNA-1:exon:14519;Parent=Msa0073780-mRNA-1 |
chr1_2 | exon | 47655268 | 47655503 | 47655268 | ID=Msa0073780-mRNA-1:exon:14520;Parent=Msa0073780-mRNA-1 |
chr1_2 | five_prime_UTR | 47651845 | 47652599 | 47651845 | ID=Msa0073780-mRNA-1:five_prime_utr;Parent=Msa0073780-mRNA-1 |
chr1_2 | CDS | 47652600 | 47652611 | 47652600 | ID=Msa0073780-mRNA-1:cds;Parent=Msa0073780-mRNA-1 |
chr1_2 | CDS | 47652749 | 47653909 | 47652749 | ID=Msa0073780-mRNA-1:cds;Parent=Msa0073780-mRNA-1 |
chr1_2 | CDS | 47654219 | 47655099 | 47654219 | ID=Msa0073780-mRNA-1:cds;Parent=Msa0073780-mRNA-1 |
chr1_2 | CDS | 47655268 | 47655322 | 47655268 | ID=Msa0073780-mRNA-1:cds;Parent=Msa0073780-mRNA-1 |
chr1_2 | three_prime_UTR | 47655323 | 47655503 | 47655323 | ID=Msa0073780-mRNA-1:three_prime_utr;Parent=Msa0073780-mRNA-1 |
Gene Sequence |
Protein sequence |