AlfalfaGEDB | Msa1367980

M. sativa cultivar zhongmu-4 / Msa1367980

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1367980	XP_013468193.1	97.443	704	14	2	1	702	1	702	0.0	1423

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1367980	sp\|Q653H7\|ARFR_ORYSJ	56.461	712	268	16	14	701	1	694	0.0	758

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1367980	A0A072VVW0	97.443	704	14	2	1	702	1	702	0.0	1423

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TFs/TRs:

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Gene ID	Type	Classification
Msa1367980	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0073780	Msa1367980	0.900623	6.089565e-78	-8.615850e-47
Msa0390640	Msa1367980	0.966132	1.630945e-125	-8.615850e-47
Msa0946420	Msa1367980	0.961355	1.320280e-119	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1367980	MtrunA17_Chr1g0181211	97.395	691	14	2	14	702	1	689	0.0	1394
Msa1367980	MtrunA17_Chr2g0326761	58.055	689	242	13	33	700	4	666	0.0	754
Msa1367980	MtrunA17_Chr4g0028971	59.130	690	223	13	37	700	9	665	0.0	737
Msa1367980	MtrunA17_Chr7g0264171	54.892	603	239	11	33	622	24	606	0.0	622
Msa1367980	MtrunA17_Chr1g0199681	50.000	644	241	12	14	615	76	680	0.0	568
Msa1367980	MtrunA17_Chr7g0264161	55.233	344	111	3	49	392	1	301	7.28e-125	373
Msa1367980	MtrunA17_Chr3g0115271	41.397	587	289	16	37	597	16	573	1.52e-117	365
Msa1367980	MtrunA17_Chr5g0424931	42.765	463	212	14	35	483	14	437	2.52e-103	325
Msa1367980	MtrunA17_Chr5g0417281	38.821	407	185	7	34	435	5	352	1.04e-86	282
Msa1367980	MtrunA17_Chr5g0436761	37.882	425	194	10	37	452	9	372	6.99e-80	262

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1367980	AT4G30080.1	55.507	681	259	13	33	699	12	662	0.0	695
Msa1367980	AT2G28350.1	53.152	698	257	18	32	699	2	659	0.0	652
Msa1367980	AT2G28350.2	53.009	698	258	18	32	699	2	659	0.0	652
Msa1367980	AT1G77850.1	42.208	462	228	12	35	482	14	450	1.86e-113	354
Msa1367980	AT1G77850.2	42.576	458	232	12	35	482	14	450	2.47e-113	354
Msa1367980	AT1G59750.4	31.454	674	366	16	40	696	22	616	6.41e-80	268
Msa1367980	AT1G59750.1	31.642	670	375	14	40	696	22	621	1.63e-79	267
Msa1367980	AT1G59750.3	31.642	670	375	14	40	696	22	621	1.63e-79	267
Msa1367980	AT1G59750.2	31.493	670	373	15	40	696	22	618	9.24e-79	265
Msa1367980	AT1G19850.2	37.859	383	186	6	37	412	40	377	7.63e-76	262

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Find 206 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTTGCATGGAATCAA+AGG	0.504526	tig0018581:+132812	None:intergenic
AAAATGGTGATCTTTGTGTT+GGG	0.488407	tig0018581:-132373	Msa1367980:CDS
AAAGGTGAAAGGTTTATGGA+TGG	0.590026	tig0018581:+131501	None:intergenic
AAAGTTTATTACTTTCCTCA+AGG	0.553230	tig0018581:-132890	Msa1367980:CDS
AACTCAGGCGCGAATATGAC+TGG	0.403386	tig0018581:-132197	Msa1367980:CDS
AACTCTGGCGTACTTGCGCG+AGG	0.565767	tig0018581:+132092	None:intergenic
AACTTGCTTCCGTTTCTTCG+CGG	0.399377	tig0018581:+130923	None:intergenic
AAGAAGGGTGAGTCCATGGT+TGG	0.682554	tig0018581:-131544	Msa1367980:CDS
AAGACCATAATGAGCATGCC+TGG	0.540953	tig0018581:+131326	None:intergenic
AAGAGAAGCAGTGAGCAACT+GGG	0.655135	tig0018581:-133291	Msa1367980:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTCAAAGGAAAGAGATGA+TGG	+	tig0018581:130501-130520	None:intergenic	30.0%
AAGAGAAGAAAAAGCAAGTA+GGG	+	tig0018581:130631-130650	None:intergenic	30.0%
ATTCATCAGAAGAAGTTGAA+AGG	-	tig0018581:131269-131288	Msa1367980:CDS	30.0%
TAAACTTTACTGTTCACTGT+TGG	+	tig0018581:131346-131365	None:intergenic	30.0%
TAACTTCATGAATTGTCCAA+AGG	-	tig0018581:131408-131427	Msa1367980:CDS	30.0%
AAAACTTTGCATGGAATCAA+AGG	+	tig0018581:131439-131458	None:intergenic	30.0%
AATGTCTTTGCAAATGAAAC+AGG	+	tig0018581:131598-131617	None:intergenic	30.0%
AAAATGGTGATCTTTGTGTT+GGG	-	tig0018581:131875-131894	Msa1367980:intron	30.0%
TACACAGAATGAGAATCAAA+TGG	-	tig0018581:131993-132012	Msa1367980:CDS	30.0%
ACACAGAATGAGAATCAAAT+GGG	-	tig0018581:131994-132013	Msa1367980:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0018581	gene	130312	133958	130312	ID=Msa1367980;Name=Msa1367980
tig0018581	mRNA	130312	133958	130312	ID=Msa1367980-mRNA-1;Parent=Msa1367980;Name=Msa1367980-mRNA-1;_AED=0.00;_eAED=0.00;_QI=743\|1\|1\|1\|0.66\|0.5\|4\|186\|702
tig0018581	exon	130312	130552	130312	ID=Msa1367980-mRNA-1:exon:273;Parent=Msa1367980-mRNA-1
tig0018581	exon	130721	131601	130721	ID=Msa1367980-mRNA-1:exon:272;Parent=Msa1367980-mRNA-1
tig0018581	exon	131911	133071	131911	ID=Msa1367980-mRNA-1:exon:271;Parent=Msa1367980-mRNA-1
tig0018581	exon	133204	133958	133204	ID=Msa1367980-mRNA-1:exon:270;Parent=Msa1367980-mRNA-1
tig0018581	five_prime_UTR	133216	133958	133216	ID=Msa1367980-mRNA-1:five_prime_utr;Parent=Msa1367980-mRNA-1
tig0018581	CDS	133204	133215	133204	ID=Msa1367980-mRNA-1:cds;Parent=Msa1367980-mRNA-1
tig0018581	CDS	131911	133071	131911	ID=Msa1367980-mRNA-1:cds;Parent=Msa1367980-mRNA-1
tig0018581	CDS	130721	131601	130721	ID=Msa1367980-mRNA-1:cds;Parent=Msa1367980-mRNA-1
tig0018581	CDS	130498	130552	130498	ID=Msa1367980-mRNA-1:cds;Parent=Msa1367980-mRNA-1
tig0018581	three_prime_UTR	130312	130497	130312	ID=Msa1367980-mRNA-1:three_prime_utr;Parent=Msa1367980-mRNA-1

Gene Sequence

>Msa1367980

ATGACTTTTCAGAAATTTTGCAGTGAAAGTTTTTTGAAGATGAATATATTTATGGATTCAAGAGATAATAACAATAATAACAATTCATCAGAAGAAGTTGAAAGGTGTTTAGATCCTCAACTATGGCATGCTTGTGCAGGTGGAATGGTTCAGATGCCAACAGTGAACAGTAAAGTTTATTACTTTCCTCAAGGTCATGCTGAACATGCATGTGGACCTGTTAACTTCATGAATTGTCCAAAGGTTTCACCTTTGATTCCATGCAAAGTTTTATCTATTAAGTATATGGCTGATCCTGAAACAGATGAGGTTTATGCTAAGCTTAAGCTTGTTCCTTTGGGTGGAAATGGTAATGGAAATGATGCTGCAGATTATGACACTGTTGGAGGAAATGAAAATCAAGATAAGCCTGTTTCATTTGCAAAGACATTGACTCAATCTGATGCTAACAATGGTGGAGGTTTTTCTGTTCCTAGGTATTGTGCTGAGACGATTTTCCCTCGTTTGGATTACGCGGCCGACCCTCCTCTTCAGAACATTTTGGCTAAAGATGTTCATGGCGAGACGTGGAAGTTTAGGCATATTTATAGAGGAACACCGAGGCGGCATCTTTTGACTACTGGTTGGAGTACTTTTGTTAATCACAAGAAGCTTCTTGCCGGGGATTCGATTGTGTTTTTGAGAGCGGAAAATGGTGATCTTTGTGTTGGGATTCGACGAGCGAAGAAGGGTATTGGTGGTGGACATGAGGATCCATTACCATTAGGGTGGAATCCTGTTGGAGAAAATTTTCCTCTTCCTTGGTTTACACAGAATGAGAATCAAATGGGGAGAAACATTAACAACAACAATAACAATGGTTTGAACTCAGGCGCGAATATGACTGGGAGGGAAAAGGTTAGGCCAGAAGCGGTCCTTCAAGCGGTAACTTTAGCGGCTAATAAGCAACCGTTTGAGGTTATTTACTACCCTCGCGCAAGTACGCCAGAGTTTTGTGTGAAGGCGCCTTTAGTAGAGGCGGCAATGCAGATTCGATGGTGTTCTGGAATAAGATTCAAGATGGCCTTTGAAACCGAGGATTCGTCTCGAATAAGTTGGTTTATGGGAATTGTATCTGGAGTTCAGTTTGTTGATCCCCTTCTCTGGCCTAATTCACCTTGGAGGCTTCTTCAGGTTAAATGGGATGAACCAGATTTACTGCAAAATGTAAGAAGGGTGAGTCCATGGTTGGTTGAATTAGTAGCAAACATTCCATCCATAAACCTTTCACCTTTCTCACAACCAAGGAAGAAATTGAGATTGTCTCCACACCACGATTTCCCCCTCGACGGCCAAATTTCAGTGCCATCGTTTCCTAGTAACCTTCTAGGTCAGAGCAACCTATTCCGTTGTCTACCCGAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTTCCGATATCGGATCTCCACCTCAGTAAAGTTCAGGCAGGTCTATTTCCGGCCGGTTTCGTGCCTTTTGATCATGCTGCTAAACTACCTAGTGTCTCTAATAACCTAATGATGCAAAAATCTAGCACGAGTGAGAATGTCTCTTGCTTACTATCCATGGCAAGTTCTACTCAGTCTTCAAAGAAATTCAACGATGAGAAGAAACCTCAGCTTGTTCTTTTCGGCCAAAAAATTCTCACCGAGCAACAAATCTCTAATGACCATTCATCAGATGGAAATACCAATAAAATGGGTAATTTTTCCGATGGTTCGGGAACTCCTCGTCATCAACAAGTCTTACCAAAACGCTCCTCTAGTGAGAGTTTCCAATGGTATAAGGATAACCGCGAAGAAACGGAAGCAAGTTTGGAGAGTACGGATCACTGTAAAGTTTTTCTCGAATCAGAAGATGTCGGTCGGACAATTGACCTTTCTTTACTTGGATCTTATGATGAACTGTACAGAAAGCTGGCAGACATGTTTGGCATAGAAAAATATGAGAAGGTAAGTCGCGTGCTCTACCGTGATATATCTGGAGCAGTCAAACACATTGGAGAGGAACCATTCAGTAACTTCACAAGAACAGCAAGGAGGTTGACTATTCTAATGGATTCAAACAAATAA

Protein sequence

>Msa1367980

MTFQKFCSESFLKMNIFMDSRDNNNNNNSSEEVERCLDPQLWHACAGGMVQMPTVNSKVYYFPQGHAEHACGPVNFMNCPKVSPLIPCKVLSIKYMADPETDEVYAKLKLVPLGGNGNGNDAADYDTVGGNENQDKPVSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAADPPLQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLLAGDSIVFLRAENGDLCVGIRRAKKGIGGGHEDPLPLGWNPVGENFPLPWFTQNENQMGRNINNNNNNGLNSGANMTGREKVRPEAVLQAVTLAANKQPFEVIYYPRASTPEFCVKAPLVEAAMQIRWCSGIRFKMAFETEDSSRISWFMGIVSGVQFVDPLLWPNSPWRLLQVKWDEPDLLQNVRRVSPWLVELVANIPSINLSPFSQPRKKLRLSPHHDFPLDGQISVPSFPSNLLGQSNLFRCLPESTPAGMQGARHAHYGLPISDLHLSKVQAGLFPAGFVPFDHAAKLPSVSNNLMMQKSSTSENVSCLLSMASSTQSSKKFNDEKKPQLVLFGQKILTEQQISNDHSSDGNTNKMGNFSDGSGTPRHQQVLPKRSSSESFQWYKDNREETEASLESTDHCKVFLESEDVGRTIDLSLLGSYDELYRKLADMFGIEKYEKVSRVLYRDISGAVKHIGEEPFSNFTRTARRLTILMDSNK*