AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0073980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0073980 MtrunA17_Chr1g0181481 85.762 302 31 2 23 312 23 324 0.0 533
Msa0073980 MtrunA17_Chr1g0181431 81.126 302 45 2 23 312 23 324 0.0 508
Msa0073980 MtrunA17_Chr1g0181511 78.395 324 58 2 1 312 1 324 3.59e-178 495
Msa0073980 MtrunA17_Chr1g0181501 96.825 189 5 1 124 312 3 190 5.31e-134 378
Msa0073980 MtrunA17_Chr4g0074851 53.823 327 130 4 8 313 4 330 1.56e-122 354
Msa0073980 MtrunA17_Chr1g0181491 96.154 104 4 0 24 127 9 112 2.04e-70 215
Msa0073980 MtrunA17_Chr4g0075241 36.364 319 185 6 9 311 11 327 1.09e-65 209
Msa0073980 MtrunA17_Chr5g0404721 39.000 300 161 6 31 311 34 330 1.44e-61 199
Msa0073980 MtrunA17_Chr8g0372601 37.342 316 171 8 17 311 21 330 1.88e-57 188
Msa0073980 MtrunA17_Chr7g0254201 34.528 307 179 6 22 313 15 314 1.62e-56 185
Msa0073980 MtrunA17_Chr3g0106921 33.648 318 194 6 8 311 6 320 2.59e-56 185
Msa0073980 MtrunA17_Chr7g0254231 36.667 300 171 5 25 312 20 312 8.22e-56 183
Msa0073980 MtrunA17_Chr7g0258811 36.615 325 181 9 10 312 51 372 1.26e-55 184
Msa0073980 MtrunA17_Chr3g0129051 33.856 319 180 8 9 308 13 319 7.66e-55 181
Msa0073980 MtrunA17_Chr6g0460711 33.968 315 185 6 12 311 8 314 2.06e-54 180
Msa0073980 MtrunA17_Chr2g0292211 35.494 324 185 7 10 313 24 343 4.43e-54 180
Msa0073980 MtrunA17_Chr2g0292241 36.977 311 169 7 25 313 27 332 7.73e-54 179
Msa0073980 MtrunA17_Chr7g0225221 35.826 321 178 8 12 311 7 320 1.14e-53 178
Msa0073980 MtrunA17_Chr5g0438021 33.119 311 192 5 14 311 18 325 1.36e-53 178
Msa0073980 MtrunA17_Chr3g0129061 33.227 313 190 6 9 308 13 319 1.39e-53 177
Msa0073980 MtrunA17_Chr3g0128061 33.028 327 198 6 5 312 3 327 1.66e-53 177
Msa0073980 MtrunA17_Chr6g0451571 35.093 322 185 7 10 311 17 334 1.73e-53 178
Msa0073980 MtrunA17_Chr2g0292151 35.275 309 177 6 25 313 27 332 2.28e-53 178
Msa0073980 MtrunA17_Chr6g0467121 35.241 332 178 10 9 312 42 364 2.34e-53 179
Msa0073980 MtrunA17_Chr1g0175561 34.675 323 185 9 12 313 11 328 2.57e-52 174
Msa0073980 MtrunA17_Chr2g0292181 35.599 309 176 6 25 313 36 341 3.00e-52 175
Msa0073980 MtrunA17_Chr2g0291751 35.922 309 175 6 25 313 27 332 3.47e-52 175
Msa0073980 MtrunA17_Chr4g0024121 33.537 328 195 6 4 311 2 326 5.80e-52 174
Msa0073980 MtrunA17_Chr2g0296621 38.487 304 158 9 27 312 50 342 1.18e-51 173
Msa0073980 MtrunA17_Chr5g0432441 34.286 315 187 6 11 311 18 326 1.33e-51 172
Msa0073980 MtrunA17_Chr2g0292251 35.390 308 176 6 25 312 26 330 1.46e-51 173
Msa0073980 MtrunA17_Chr4g0070951 33.631 336 193 10 1 312 1 330 1.66e-51 172
Msa0073980 MtrunA17_Chr1g0164891 34.314 306 176 6 28 311 90 392 2.03e-51 174
Msa0073980 MtrunA17_Chr6g0467251 34.915 295 172 6 27 307 36 324 4.23e-51 172
Msa0073980 MtrunA17_Chr3g0114451 34.169 319 188 7 10 311 5 318 6.95e-51 171
Msa0073980 MtrunA17_Chr4g0046131 34.211 304 176 7 26 307 41 342 1.27e-50 171
Msa0073980 MtrunA17_Chr2g0292111 34.628 309 179 6 25 313 27 332 1.76e-50 171
Msa0073980 MtrunA17_Chr8g0364291 35.714 322 186 5 9 311 5 324 1.79e-50 170
Msa0073980 MtrunA17_Chr5g0400331 34.591 318 181 6 18 311 17 331 1.91e-50 170
Msa0073980 MtrunA17_Chr3g0129041 32.692 312 194 5 13 311 14 322 2.34e-50 169
Msa0073980 MtrunA17_Chr1g0194151 34.091 308 180 6 25 311 28 333 2.58e-50 169
Msa0073980 MtrunA17_Chr6g0467161 33.233 331 188 9 9 313 15 338 2.96e-50 169
Msa0073980 MtrunA17_Chr1g0197411 32.121 330 189 9 8 307 2 326 8.11e-50 168
Msa0073980 MtrunA17_Chr2g0292091 33.871 310 182 6 23 312 20 326 4.96e-49 166
Msa0073980 MtrunA17_Chr2g0320071 33.333 321 187 8 11 311 4 317 5.04e-49 166
Msa0073980 MtrunA17_Chr2g0292261 34.405 311 175 7 25 312 27 331 5.96e-49 166
Msa0073980 MtrunA17_Chr7g0244461 30.892 314 198 6 12 311 4 312 7.81e-49 165
Msa0073980 MtrunA17_Chr1g0194271 34.395 314 178 6 25 311 28 340 1.01e-48 166
Msa0073980 MtrunA17_Chr5g0413051 33.981 309 182 8 24 311 70 377 1.33e-48 166
Msa0073980 MtrunA17_Chr4g0076211 35.216 301 167 7 29 311 43 333 1.50e-48 165
Msa0073980 MtrunA17_Chr7g0268501 33.129 326 184 9 10 311 5 320 3.48e-48 164
Msa0073980 MtrunA17_Chr7g0268521 33.129 326 184 9 10 311 5 320 3.48e-48 164
Msa0073980 MtrunA17_Chr2g0320031 32.558 301 184 6 25 311 24 319 8.20e-48 162
Msa0073980 MtrunA17_Chr4g0013821 32.468 308 182 7 25 313 26 326 9.00e-48 163
Msa0073980 MtrunA17_Chr2g0316791 32.219 329 177 8 25 307 74 402 1.28e-47 164
Msa0073980 MtrunA17_Chr4g0038151 30.892 314 203 4 11 311 9 321 1.53e-47 162
Msa0073980 MtrunA17_Chr4g0038171 31.173 324 199 7 6 311 4 321 2.22e-47 161
Msa0073980 MtrunA17_Chr1g0204011 31.481 324 199 6 5 311 5 322 2.56e-47 161
Msa0073980 MtrunA17_Chr2g0320061 31.529 314 193 7 12 311 13 318 9.24e-47 160
Msa0073980 MtrunA17_Chr2g0316191 31.515 330 179 8 25 307 74 403 1.26e-46 162
Msa0073980 MtrunA17_Chr4g0013721 32.573 307 183 6 25 313 98 398 2.05e-46 161
Msa0073980 MtrunA17_Chr2g0320101 32.381 315 188 7 12 311 13 317 3.00e-46 159
Msa0073980 MtrunA17_Chr4g0043391 31.529 314 192 6 16 311 16 324 3.04e-46 159
Msa0073980 MtrunA17_Chr2g0316481 31.611 329 179 8 25 307 74 402 3.17e-46 161
Msa0073980 MtrunA17_Chr2g0316831 31.915 329 178 8 25 307 110 438 3.17e-46 162
Msa0073980 MtrunA17_Chr4g0038161 30.892 314 202 5 11 311 9 320 3.48e-46 158
Msa0073980 MtrunA17_Chr2g0292101 32.609 322 192 7 12 313 12 328 5.31e-46 159
Msa0073980 MtrunA17_Chr2g0292291 33.117 308 184 6 24 311 27 332 7.19e-46 159
Msa0073980 MtrunA17_Chr2g0320051 31.229 301 188 6 25 311 23 318 8.89e-46 157
Msa0073980 MtrunA17_Chr3g0106901 31.348 319 197 6 8 311 12 323 9.04e-46 157
Msa0073980 MtrunA17_Chr4g0013201 32.450 302 182 6 25 311 44 338 1.55e-45 157
Msa0073980 MtrunA17_Chr4g0063671 31.889 323 190 8 12 311 5 320 1.69e-45 157
Msa0073980 MtrunA17_Chr1g0155611 36.482 307 168 7 27 311 46 347 2.25e-45 157
Msa0073980 MtrunA17_Chr4g0068621 33.553 304 182 7 25 311 36 336 4.23e-45 156
Msa0073980 MtrunA17_Chr1g0148021 33.750 320 188 7 12 311 13 328 5.07e-45 155
Msa0073980 MtrunA17_Chr2g0329641 31.922 307 186 6 24 311 33 335 2.76e-44 154
Msa0073980 MtrunA17_Chr2g0320091 30.696 316 200 6 11 311 7 318 5.12e-44 152
Msa0073980 MtrunA17_Chr5g0405991 34.796 319 179 10 13 311 7 316 5.66e-44 152
Msa0073980 MtrunA17_Chr4g0013171 34.106 302 179 7 25 311 25 321 6.66e-44 152
Msa0073980 MtrunA17_Chr2g0311251 29.878 328 185 6 25 307 9 336 9.12e-44 152
Msa0073980 MtrunA17_Chr4g0072091 33.444 302 176 7 26 307 23 319 9.60e-44 152
Msa0073980 MtrunA17_Chr2g0299691 33.115 305 176 7 31 312 60 359 1.84e-43 152
Msa0073980 MtrunA17_Chr2g0322861 32.399 321 194 7 10 311 70 386 2.68e-43 152
Msa0073980 MtrunA17_Chr7g0244451 30.573 314 196 6 13 311 10 316 3.89e-43 150
Msa0073980 MtrunA17_Chr2g0292271 31.731 312 186 7 24 313 26 332 3.94e-43 151
Msa0073980 MtrunA17_Chr1g0213061 30.530 321 200 10 9 312 8 322 7.93e-43 150
Msa0073980 MtrunA17_Chr6g0477071 30.132 302 191 5 22 311 49 342 9.40e-43 150
Msa0073980 MtrunA17_Chr1g0188431 30.976 297 185 5 27 311 39 327 1.15e-42 149
Msa0073980 MtrunA17_Chr8g0371381 33.444 302 176 7 27 311 26 319 1.49e-42 149
Msa0073980 MtrunA17_Chr5g0401431 33.333 321 190 6 11 310 11 328 1.86e-42 149
Msa0073980 MtrunA17_Chr4g0013191 32.673 303 183 7 25 311 43 340 3.29e-42 149
Msa0073980 MtrunA17_Chr2g0279041 29.697 330 199 8 8 311 3 325 4.53e-42 148
Msa0073980 MtrunA17_Chr3g0136751 31.077 325 198 6 7 311 4 322 7.36e-42 147
Msa0073980 MtrunA17_Chr5g0432351 32.515 326 192 9 8 311 2 321 7.82e-42 147
Msa0073980 MtrunA17_Chr5g0402571 31.975 319 195 7 11 311 12 326 8.72e-41 144
Msa0073980 MtrunA17_Chr1g0157051 29.938 324 187 8 12 310 9 317 8.77e-41 144
Msa0073980 MtrunA17_Chr5g0402581 31.348 319 197 7 11 311 12 326 3.36e-40 143
Msa0073980 MtrunA17_Chr4g0013181 33.333 297 178 7 30 311 62 353 6.80e-40 143
Msa0073980 MtrunA17_Chr3g0107881 30.247 324 197 9 10 311 8 324 1.43e-39 141
Msa0073980 MtrunA17_Chr5g0432331 31.373 306 184 8 25 311 54 352 5.64e-39 140
Msa0073980 MtrunA17_Chr7g0224371 30.503 318 197 8 13 312 12 323 9.40e-39 139
Msa0073980 MtrunA17_Chr5g0432341 31.803 305 184 8 25 311 23 321 2.16e-38 138
Msa0073980 MtrunA17_Chr4g0053871 32.107 299 184 5 25 307 25 320 2.37e-38 138
Msa0073980 MtrunA17_Chr5g0421411 31.560 282 158 9 57 311 12 285 6.99e-35 128
Msa0073980 MtrunA17_Chr2g0278671 29.430 316 182 9 24 311 21 323 2.31e-33 125
Msa0073980 MtrunA17_Chr2g0279061 30.038 263 157 6 69 311 11 266 3.66e-32 120
Msa0073980 MtrunA17_Chr2g0316811 32.301 226 119 6 25 216 48 273 4.26e-28 111
Msa0073980 MtrunA17_Chr2g0292281 31.925 213 114 5 118 312 18 217 5.57e-26 103
Msa0073980 MtrunA17_Chr3g0114461 33.862 189 119 3 124 311 9 192 1.33e-25 100
Msa0073980 MtrunA17_Chr4g0004591 24.444 315 165 6 27 307 77 352 9.26e-25 102
Msa0073980 MtrunA17_Chr5g0432401 26.074 326 166 11 10 310 10 285 1.64e-21 92.4
Msa0073980 MtrunA17_Chr3g0114491 41.121 107 61 2 23 127 14 120 2.61e-19 82.4
Msa0073980 MtrunA17_Chr2g0311241 42.718 103 57 2 25 126 58 159 5.85e-19 86.7
Msa0073980 MtrunA17_Chr6g0468731 45.000 60 30 1 65 124 22 78 1.71e-11 59.7
Msa0073980 MtrunA17_Chr5g0423911 40.909 66 39 0 242 307 2 67 2.14e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0073980 AT2G37130.1 66.557 305 89 3 20 311 23 327 3.68e-152 429
Msa0073980 AT2G37130.2 67.568 296 83 3 29 311 1 296 9.08e-149 420
Msa0073980 AT4G21960.1 52.525 297 129 2 27 311 31 327 1.92e-115 337
Msa0073980 AT4G08780.1 36.478 318 171 8 21 313 18 329 5.40e-63 203
Msa0073980 AT4G08770.1 36.760 321 172 8 18 313 15 329 1.11e-62 202
Msa0073980 AT2G18150.1 35.312 337 184 7 6 311 3 336 1.46e-58 191
Msa0073980 AT3G50990.1 38.235 306 167 6 25 311 39 341 7.63e-58 190
Msa0073980 AT3G03670.1 34.062 320 191 4 9 311 5 321 3.40e-57 187
Msa0073980 AT3G32980.1 35.423 319 181 7 16 312 20 335 6.90e-57 187
Msa0073980 AT5G17820.1 34.810 316 177 7 13 311 10 313 1.80e-56 185
Msa0073980 AT3G49110.1 35.423 319 181 7 16 312 22 337 3.43e-56 186
Msa0073980 AT5G14130.1 35.312 320 185 5 10 311 15 330 3.50e-56 185
Msa0073980 AT3G49120.1 35.714 322 176 8 16 312 21 336 4.23e-56 186
Msa0073980 AT5G05340.1 33.887 301 183 5 24 311 27 324 1.08e-55 184
Msa0073980 AT5G14130.2 35.312 320 185 5 10 311 56 371 1.35e-55 185
Msa0073980 AT4G36430.1 35.880 301 171 7 31 312 34 331 1.48e-55 183
Msa0073980 AT2G18140.1 34.936 312 181 6 19 311 27 335 1.63e-55 183
Msa0073980 AT5G06730.1 33.129 326 193 7 10 313 14 336 1.66e-55 184
Msa0073980 AT3G17070.1 33.333 339 194 9 4 311 2 339 2.69e-55 183
Msa0073980 AT5G17820.2 34.810 316 177 7 13 311 63 366 2.77e-55 184
Msa0073980 AT5G06720.1 34.731 334 192 9 3 313 5 335 5.06e-55 182
Msa0073980 AT5G66390.1 35.667 300 171 7 31 311 37 333 1.21e-54 181
Msa0073980 AT1G30870.1 38.111 307 160 9 27 313 51 347 2.92e-54 181
Msa0073980 AT2G22420.1 32.508 323 192 7 10 313 6 321 1.35e-53 178
Msa0073980 AT2G39040.1 35.275 309 178 7 24 311 43 350 6.08e-53 177
Msa0073980 AT4G33870.1 30.814 344 189 6 13 307 54 397 5.15e-52 176
Msa0073980 AT4G16270.1 34.356 326 177 9 7 311 39 348 2.15e-51 173
Msa0073980 AT5G40150.1 34.983 303 181 4 23 311 28 328 3.41e-51 172
Msa0073980 AT1G71695.1 32.781 302 184 5 27 313 44 341 6.37e-51 172
Msa0073980 AT5G15180.1 33.436 326 189 9 9 311 9 329 9.55e-51 171
Msa0073980 AT1G24110.1 34.868 304 178 5 22 307 17 318 3.43e-50 169
Msa0073980 AT2G38390.1 33.856 319 187 7 16 313 20 335 5.25e-50 169
Msa0073980 AT1G14550.1 34.062 320 184 8 11 311 10 321 6.57e-50 169
Msa0073980 AT1G14540.1 33.438 317 190 7 12 311 3 315 8.17e-50 168
Msa0073980 AT4G31760.1 32.508 323 192 6 9 311 10 326 8.22e-50 168
Msa0073980 AT2G38380.1 34.169 319 186 7 16 313 20 335 8.84e-50 169
Msa0073980 AT1G05260.1 32.468 308 185 7 24 312 23 326 1.40e-49 168
Msa0073980 AT1G34510.1 33.648 318 179 8 10 311 8 309 1.72e-49 167
Msa0073980 AT4G26010.1 33.968 315 182 7 10 311 8 309 1.74e-49 167
Msa0073980 AT4G26010.2 33.968 315 182 7 10 311 36 337 3.51e-49 167
Msa0073980 AT5G64120.1 31.023 303 186 6 25 311 33 328 3.68e-49 167
Msa0073980 AT5G24070.1 35.390 308 173 7 26 312 34 336 1.34e-48 166
Msa0073980 AT2G24800.1 32.573 307 181 7 25 311 29 329 6.01e-48 164
Msa0073980 AT2G35380.1 33.987 306 175 7 30 311 33 335 6.92e-48 164
Msa0073980 AT2G41480.1 32.121 330 191 10 8 311 6 328 9.26e-48 163
Msa0073980 AT5G19880.1 32.099 324 193 8 12 311 9 329 2.58e-47 162
Msa0073980 AT4G17690.1 34.448 299 180 4 27 311 26 322 3.16e-47 162
Msa0073980 AT3G01190.1 32.390 318 187 10 14 311 12 321 1.17e-46 160
Msa0073980 AT4G37530.1 33.546 313 182 7 21 311 21 329 3.30e-46 159
Msa0073980 AT2G18980.1 32.836 335 185 7 4 311 2 323 4.18e-46 159
Msa0073980 AT4G37520.2 33.333 306 181 7 25 311 25 326 4.95e-46 159
Msa0073980 AT2G34060.1 32.787 305 181 7 26 308 41 343 1.16e-45 158
Msa0073980 AT4G37520.1 33.010 309 181 7 25 311 25 329 1.48e-45 157
Msa0073980 AT5G58390.1 31.511 311 196 6 12 308 6 313 1.48e-45 157
Msa0073980 AT1G44970.1 35.922 309 171 7 25 311 43 346 1.66e-45 158
Msa0073980 AT5G58400.1 31.173 324 197 9 4 308 6 322 1.76e-45 157
Msa0073980 AT3G28200.1 33.333 303 185 6 23 311 17 316 6.12e-45 155
Msa0073980 AT1G05240.1 33.115 305 179 6 27 311 26 325 8.66e-45 155
Msa0073980 AT1G05250.1 33.115 305 179 6 27 311 26 325 8.66e-45 155
Msa0073980 AT1G68850.1 32.039 309 185 9 27 312 30 336 2.71e-44 154
Msa0073980 AT4G11290.1 31.595 326 196 8 10 311 4 326 2.73e-44 154
Msa0073980 AT4G30170.1 33.333 306 180 6 25 311 25 325 2.96e-44 154
Msa0073980 AT1G49570.1 31.596 307 184 7 25 309 46 348 5.83e-43 151
Msa0073980 AT5G51890.1 31.699 306 185 7 24 311 23 322 6.14e-43 150
Msa0073980 AT5G22410.1 31.661 319 190 9 11 308 11 322 7.83e-43 150
Msa0073980 AT5G47000.1 33.333 300 183 5 27 311 33 330 9.62e-43 150
Msa0073980 AT4G33420.1 30.159 315 200 5 9 311 19 325 1.26e-42 149
Msa0073980 AT5G39580.1 30.897 301 184 7 28 311 26 319 1.40e-42 149
Msa0073980 AT3G17070.2 34.866 261 151 7 68 311 18 276 3.88e-42 147
Msa0073980 AT4G33420.2 30.159 315 200 5 9 311 66 372 6.11e-42 149
Msa0073980 AT5G42180.1 30.960 323 195 8 8 310 2 316 7.75e-42 147
Msa0073980 AT3G21770.1 31.190 311 191 7 16 307 18 324 1.91e-41 147
Msa0073980 AT2G43480.1 31.596 307 184 7 26 311 34 335 3.37e-41 146
Msa0073980 AT5G19890.1 31.935 310 180 9 24 311 27 327 3.15e-40 143
Msa0073980 AT5G67400.1 32.686 309 182 7 25 311 25 329 4.52e-39 140
Msa0073980 AT1G77100.1 29.688 320 199 10 12 311 6 319 3.39e-38 138
Msa0073980 AT4G37530.2 34.470 264 147 7 21 262 21 280 4.08e-38 137
Msa0073980 AT3G49960.1 31.153 321 197 6 12 311 12 329 6.30e-38 137
Msa0073980 AT4G25980.1 28.750 320 198 9 15 311 14 326 3.19e-37 135
Msa0073980 AT2G35380.2 32.489 237 135 5 97 311 14 247 2.25e-33 123
Msa0073980 AT5G64110.1 30.363 303 181 8 30 311 37 330 2.52e-32 122
Msa0073980 AT5G64100.1 27.778 306 187 8 28 311 38 331 6.30e-28 110
Msa0073980 AT4G25980.2 31.667 180 106 5 15 181 59 234 5.93e-22 94.0
Msa0073980 AT2G24800.2 31.176 170 102 3 25 182 29 195 1.93e-19 86.3
Msa0073980 AT5G39580.2 29.775 178 109 4 28 193 26 199 1.96e-18 83.2

Find 76 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGAGAATAATCCTCTTAT+TGG 0.181658 1_2:-48053658 Msa0073980:CDS
TGTACATAAGGTGATGTTAT+TGG 0.218584 1_2:+48053742 None:intergenic
CAGACATCGGTAAGAAGTTT+TGG 0.224300 1_2:-48056125 Msa0073980:CDS
AGGCTAATTATATATCTATT+TGG 0.226220 1_2:+48053594 None:intergenic
CCACTCTTCATTTCAATGTT+TGG 0.239217 1_2:+48054254 None:intergenic
TTCTAGATATATGTTGTAAA+AGG 0.244000 1_2:-48053432 Msa0073980:three_prime_UTR
TTTGCCTTTGGATTTGGTTT+TGG 0.250284 1_2:+48053883 None:intergenic
ACATTTCAACTTGCTAAATA+TGG 0.250905 1_2:-48056965 Msa0073980:exon
TTGATTATCTCTTCGGCTCT+TGG 0.275811 1_2:+48056369 None:intergenic
TTTCTCAACAGCAGCTTTGA+TGG 0.281307 1_2:+48056076 None:intergenic
TATACTGTATTAGTTGGTTT+TGG 0.284893 1_2:-48053399 Msa0073980:three_prime_UTR
CTCACTCGTTTCCAAGCTAT+TGG 0.285653 1_2:-48054152 Msa0073980:CDS
GAATAAGTAAATTATTTCTA+TGG 0.294071 1_2:+48053519 None:intergenic
CCAAGGACATGGAGGCATTA+TGG 0.297639 1_2:+48054177 None:intergenic
AAGCAATAGAAAGAGGAAAT+AGG 0.306631 1_2:+48056921 None:intergenic
GTACATAAGGTGATGTTATT+GGG 0.332380 1_2:+48053743 None:intergenic
CTCTTCGGCTCTTGGGCAGC+TGG 0.364309 1_2:+48056377 None:intergenic
TATCGAATTGTAGAGATGTT+TGG 0.366067 1_2:-48053486 Msa0073980:three_prime_UTR
TCACCTTGATCTCCAATAAG+AGG 0.374831 1_2:+48053646 None:intergenic
CTACTCTATACTGTATTAGT+TGG 0.385455 1_2:-48053405 Msa0073980:three_prime_UTR
TTGTTGCTTGATTATCTCTT+CGG 0.386543 1_2:+48056362 None:intergenic
GTCTAGCGTTGGATCCACTA+TGG 0.388158 1_2:+48053939 None:intergenic
AAGAGTACACTGCATAAATA+TGG 0.396458 1_2:-48053977 Msa0073980:CDS
ACAAATACAAGCTATATTGT+AGG 0.411354 1_2:+48053574 None:intergenic
GATATTTCTATTTAGTAAGA+TGG 0.421253 1_2:+48053364 None:intergenic
GACATGGAGGCATTATGGTT+TGG 0.428570 1_2:+48054182 None:intergenic
TGATTATCTCTTCGGCTCTT+GGG 0.432566 1_2:+48056370 None:intergenic
TTGAAATGAAGAGTGGAAGA+AGG 0.466644 1_2:-48054247 Msa0073980:CDS
TTTAGGTAGGAAACATATGT+AGG 0.471391 1_2:+48053916 None:intergenic
AATCCTCTTATTGGAGATCA+AGG 0.479309 1_2:-48053649 Msa0073980:CDS
CCATAATGCCTCCATGTCCT+TGG 0.488227 1_2:-48054177 Msa0073980:CDS
AACGTGGCGTGGTGTGGTAT+CGG 0.489059 1_2:-48056150 Msa0073980:CDS
TCACATTGACCATGCAATCA+TGG 0.491944 1_2:+48056283 None:intergenic
ATTTACCCAAGTTAAAATGT+AGG 0.492281 1_2:+48056896 None:intergenic
TTCGGCTCTTGGGCAGCTGG+TGG 0.494213 1_2:+48056380 None:intergenic
GAGATTTCGAAGCCACGAAA+TGG 0.495427 1_2:+48056308 None:intergenic
AGTAGTAGTTCAGCTGGAGC+TGG 0.495513 1_2:+48056403 None:intergenic
TGGTGGAGTAGTAGTTCAGC+TGG 0.496466 1_2:+48056397 None:intergenic
GGAGGCATTATGGTTTGGAA+TGG 0.501790 1_2:+48054187 None:intergenic
AAGGAAGCACAGCCATTTCG+TGG 0.505711 1_2:-48056320 Msa0073980:CDS
TAGTTGTTATCAATTATCAA+TGG 0.505973 1_2:+48053826 None:intergenic
AGATCAAGGTGAAATTAGAA+AGG 0.511339 1_2:-48053635 Msa0073980:CDS
TGAAATGAAGAGTGGAAGAA+GGG 0.514033 1_2:-48054246 Msa0073980:CDS
TTGGATAATCCTCAAAATGA+AGG 0.514386 1_2:-48053467 Msa0073980:three_prime_UTR
GTCACTGAACTATATAATCA+AGG 0.517848 1_2:-48056339 Msa0073980:CDS
GTAGGATAAGCAATAGAAAG+AGG 0.523449 1_2:+48056914 None:intergenic
TCTAGCGTTGGATCCACTAT+GGG 0.531201 1_2:+48053940 None:intergenic
TTTAGCAACGTGGCGTGGTG+TGG 0.538261 1_2:-48056156 Msa0073980:CDS
CAACATCAACACCAATAGCT+TGG 0.551491 1_2:+48054141 None:intergenic
TAGCAAAGAAAGCTATGTAA+AGG 0.556477 1_2:-48054222 Msa0073980:CDS
AAATCTCTTCCATGATTGCA+TGG 0.571041 1_2:-48056292 Msa0073980:CDS
TTAGGTAGGAAACATATGTA+GGG 0.579127 1_2:+48053917 None:intergenic
AGAAAGCTATGTAAAGGTGG+TGG 0.581012 1_2:-48054216 Msa0073980:CDS
CAAAGAAAGCTATGTAAAGG+TGG 0.592533 1_2:-48054219 Msa0073980:CDS
ATCAGCACATGATACTGTCA+AGG 0.596717 1_2:+48056046 None:intergenic
CCAAACATTGAAATGAAGAG+TGG 0.598378 1_2:-48054254 Msa0073980:CDS
CCACTATGGGGTATAGTCTG+TGG 0.598392 1_2:+48053953 None:intergenic
AGGTGATGTTATTGGGTCAG+TGG 0.598487 1_2:+48053750 None:intergenic
ACGAGTGAGAACCAAGGACA+TGG 0.603572 1_2:+48054166 None:intergenic
CCACAGACTATACCCCATAG+TGG 0.603814 1_2:-48053953 Msa0073980:CDS
TGAATCAGGAGCACATTCAG+TGG 0.611989 1_2:-48054001 Msa0073980:intron
ACTTCAATGAGCAATTCTCA+AGG 0.615505 1_2:-48053696 Msa0073980:CDS
TGGTGTTGATGTTGAAGCCA+CGG 0.619561 1_2:-48054132 Msa0073980:CDS
ATGTCCAAAACCAAATCCAA+AGG 0.620759 1_2:-48053887 Msa0073980:CDS
ACATATGTAGGGTCTAGCGT+TGG 0.622105 1_2:+48053928 None:intergenic
GAATCAGGAGCACATTCAGT+GGG 0.623327 1_2:-48054000 Msa0073980:intron
CTTCAATGAGCAATTCTCAA+GGG 0.627350 1_2:-48053695 Msa0073980:CDS
TGTGGTATCGGAGCAGACAT+CGG 0.648826 1_2:-48056138 Msa0073980:CDS
CAAAAGCTGTCGAATATGTG+AGG 0.654580 1_2:-48053864 Msa0073980:CDS
CTAGCGTTGGATCCACTATG+GGG 0.672364 1_2:+48053941 None:intergenic
GATACCTAAAAGAGCAACCG+TGG 0.673209 1_2:+48054115 None:intergenic
TCAGCACATGATACTGTCAA+GGG 0.681224 1_2:+48056047 None:intergenic
AGGAAATAGGAATTAGAACG+AGG 0.699200 1_2:+48056934 None:intergenic
GCATAAGGGTCTTCTCACTG+TGG 0.719016 1_2:-48053785 Msa0073980:CDS
AGTGAGAACCAAGGACATGG+AGG 0.728213 1_2:+48054169 None:intergenic
TTGGAAACGAGTGAGAACCA+AGG 0.778312 1_2:+48054160 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTAAAT+TGG - chr1_2:48053606-48053625 Msa0073980:exon 0.0%
!! AAAAAAAAAATTAAAAAAAT+TGG + chr1_2:48054446-48054465 None:intergenic 0.0%
!! AAAAAAAAAAAAAAAAACCA+AGG + chr1_2:48053602-48053621 None:intergenic 10.0%
!!! AAAAACATTATAAACTTTTT+TGG - chr1_2:48054850-48054869 Msa0073980:intron 10.0%
!!! ATGTATTAACATTTTTTTTA+GGG + chr1_2:48055400-48055419 None:intergenic 10.0%
!!! TATGTATTAACATTTTTTTT+AGG + chr1_2:48055401-48055420 None:intergenic 10.0%
!!! AAAATATTTAATTTGCATTT+TGG - chr1_2:48055650-48055669 Msa0073980:intron 10.0%
!! AATAAAATGTTTATGTAAAT+TGG + chr1_2:48056298-48056317 None:intergenic 10.0%
!!! TACATAAACATTTTATTAAT+TGG - chr1_2:48056301-48056320 Msa0073980:CDS 10.0%
!!! GTATATCTTTATAATTTTGT+AGG - chr1_2:48053636-48053655 Msa0073980:CDS 15.0%
!! TTAAAACAGAAAAAATGAAA+GGG + chr1_2:48054654-48054673 None:intergenic 15.0%
!!! TTTAAAACAGAAAAAATGAA+AGG + chr1_2:48054655-48054674 None:intergenic 15.0%
!!! TTTTGCAATTTTATATCAAT+AGG + chr1_2:48054790-48054809 None:intergenic 15.0%
!! GATACTAATTAAATAGTTAA+GGG + chr1_2:48055217-48055236 None:intergenic 15.0%
!!! TGATATTATTGATTAGAATA+TGG - chr1_2:48055307-48055326 Msa0073980:intron 15.0%
!! ATATTAATATTAGACAAACA+CGG + chr1_2:48055589-48055608 None:intergenic 15.0%
!!! GAATAAGTAAATTATTTCTA+TGG + chr1_2:48056819-48056838 None:intergenic 15.0%
!! TAAATATTGGTCACAAAAAA+AGG + chr1_2:48053490-48053509 None:intergenic 20.0%
!! AAAAAAAAAAAAAACCAAGG+TGG + chr1_2:48053599-48053618 None:intergenic 20.0%
!! TAAAACAGAAAAAATGAAAG+GGG + chr1_2:48054653-48054672 None:intergenic 20.0%
!! CGATACTAATTAAATAGTTA+AGG + chr1_2:48055216-48055235 None:intergenic 20.0%
!!! CGTTTTTGAATTAAAACTAA+CGG + chr1_2:48055120-48055139 None:intergenic 20.0%
!!! AGTTTTAATTCAAAAACGTT+AGG - chr1_2:48054993-48055012 Msa0073980:intron 20.0%
!!! GTTTTAATTCAAAAACGTTA+GGG - chr1_2:48054994-48055013 Msa0073980:intron 20.0%
!!! GTTTTAATTCAAAAACGTTA+GGG + chr1_2:48054994-48055013 None:intergenic 20.0%
!!! AGTTTTAATTCAAAAACGTT+AGG + chr1_2:48054993-48055012 None:intergenic 20.0%
!!! TGAATATTTTATACGAGTAT+GGG + chr1_2:48055272-48055291 None:intergenic 20.0%
!!! ATGAATATTTTATACGAGTA+TGG + chr1_2:48055273-48055292 None:intergenic 20.0%
!! TGTATTAACATATACTTATG+CGG + chr1_2:48055369-48055388 None:intergenic 20.0%
!! CAAATATAGACAGTTTAATT+TGG + chr1_2:48055691-48055710 None:intergenic 20.0%
!! CAAATTAAACTGTCTATATT+TGG - chr1_2:48055689-48055708 Msa0073980:intron 20.0%
!! AATAAAAATCACATGCAATT+TGG + chr1_2:48055759-48055778 None:intergenic 20.0%
!!! ATTGCATGTGATTTTTATTT+TGG - chr1_2:48055760-48055779 Msa0073980:intron 20.0%
!! AGACTAATCTATTAATTAGA+AGG + chr1_2:48055920-48055939 None:intergenic 20.0%
!!! TAATAGATTAGTCTTTAGAT+TGG - chr1_2:48055926-48055945 Msa0073980:intron 20.0%
!!! TCTTTATTTTCACATAGTTA+AGG - chr1_2:48055964-48055983 Msa0073980:intron 20.0%
!! TAGTTGTTATCAATTATCAA+TGG + chr1_2:48056512-48056531 None:intergenic 20.0%
!! AGGCTAATTATATATCTATT+TGG + chr1_2:48056744-48056763 None:intergenic 20.0%
!! TTCTAGATATATGTTGTAAA+AGG - chr1_2:48056903-48056922 Msa0073980:CDS 20.0%
!!! ACATTTCAACTTGCTAAATA+TGG - chr1_2:48053370-48053389 Msa0073980:three_prime_UTR 25.0%
!!! CTTATCCTACATTTTAACTT+GGG - chr1_2:48053434-48053453 Msa0073980:three_prime_UTR 25.0%
! ATTTACCCAAGTTAAAATGT+AGG + chr1_2:48053442-48053461 None:intergenic 25.0%
!!! AGTCATGTATTTTTATGTAC+AGG - chr1_2:48053903-48053922 Msa0073980:CDS 25.0%
!!! GTCATGTATTTTTATGTACA+GGG - chr1_2:48053904-48053923 Msa0073980:CDS 25.0%
! TATAATTAAATAACGCGAGA+AGG - chr1_2:48054495-48054514 Msa0073980:intron 25.0%
!!! TTCTCGCGTTATTTTTTTTT+TGG + chr1_2:48054598-48054617 None:intergenic 25.0%
!!! AATTTTTTTTCCAACATGAG+AGG - chr1_2:48054673-48054692 Msa0073980:intron 25.0%
!!! ATTTTTTTTCCAACATGAGA+GGG - chr1_2:48054674-48054693 Msa0073980:intron 25.0%
! CTATTTAATTAGTATCGCTT+TGG - chr1_2:48054898-48054917 Msa0073980:intron 25.0%
!!! ATTTTCTTCTGGATTTTTTC+TGG - chr1_2:48055024-48055043 Msa0073980:intron 25.0%
!!! TTTTCTTCTGGATTTTTTCT+GGG - chr1_2:48055025-48055044 Msa0073980:intron 25.0%
!!! AGTTTAATTTGGATCGATTA+TGG + chr1_2:48055680-48055699 None:intergenic 25.0%
! TAAACTGTCTATATTTGGAT+CGG - chr1_2:48055694-48055713 Msa0073980:intron 25.0%
! GCTTTCATTGTAAAAATTAG+AGG + chr1_2:48055834-48055853 None:intergenic 25.0%
!! CTAATTTTTACAATGAAAGC+CGG - chr1_2:48055834-48055853 Msa0073980:intron 25.0%
! TACTATGTTGATGTTAATGT+TGG - chr1_2:48056019-48056038 Msa0073980:intron 25.0%
!! TGCGTTTTGTATATTTAGTT+AGG - chr1_2:48056054-48056073 Msa0073980:CDS 25.0%
! ATCACCTTATGTACAAAAAA+TGG - chr1_2:48056601-48056620 Msa0073980:intron 25.0%
! ACAAATACAAGCTATATTGT+AGG + chr1_2:48056764-48056783 None:intergenic 25.0%
!!! AATTTGTTTCCTTCATTTTG+AGG + chr1_2:48056880-48056899 None:intergenic 25.0%
!!! TATACTGTATTAGTTGGTTT+TGG - chr1_2:48056936-48056955 Msa0073980:CDS 25.0%
AAGCAATAGAAAGAGGAAAT+AGG + chr1_2:48053417-48053436 None:intergenic 30.0%
!!! GCTTATCCTACATTTTAACT+TGG - chr1_2:48053433-48053452 Msa0073980:three_prime_UTR 30.0%
! GACTTGATCATTTCTTTTCA+AGG - chr1_2:48053658-48053677 Msa0073980:CDS 30.0%
TAATGATAAGAATCTCGTGT+TGG + chr1_2:48053748-48053767 None:intergenic 30.0%
! TTGTTGCTTGATTATCTCTT+CGG + chr1_2:48053976-48053995 None:intergenic 30.0%
GTCACTGAACTATATAATCA+AGG - chr1_2:48053996-48054015 Msa0073980:CDS 30.0%
TTGAAACGATATAACTGTTG+TGG + chr1_2:48054098-48054117 None:intergenic 30.0%
!!! CGTTATTTTTTTTTTGGTGG+TGG + chr1_2:48054592-48054611 None:intergenic 30.0%
!!! TCGCGTTATTTTTTTTTTGG+TGG + chr1_2:48054595-48054614 None:intergenic 30.0%
GCCTACTTTACATGTATATA+AGG - chr1_2:48054708-48054727 Msa0073980:intron 30.0%
GCCTTATATACATGTAAAGT+AGG + chr1_2:48054712-48054731 None:intergenic 30.0%
ATCAATAGGTTAAAGAGAGT+TGG + chr1_2:48054776-48054795 None:intergenic 30.0%
! TTTCTCTCTGTTACACATTT+TGG - chr1_2:48054959-48054978 Msa0073980:intron 30.0%
!!! TTTTTGTTGTTGAAGGTTGA+TGG - chr1_2:48055049-48055068 Msa0073980:intron 30.0%
ATGATATGAAGATGAAGAAG+AGG - chr1_2:48055074-48055093 Msa0073980:intron 30.0%
! TTTCTCTACGTTACACATTT+TGG + chr1_2:48055152-48055171 None:intergenic 30.0%
CTATTTAATTAGTATCGCTC+TGG + chr1_2:48055213-48055232 None:intergenic 30.0%
! AGTTGGCTAAATTGCATTTT+TGG + chr1_2:48055244-48055263 None:intergenic 30.0%
TGCATTATTATGTTGCTAGT+TGG - chr1_2:48055449-48055468 Msa0073980:intron 30.0%
GACAAACACGGTAAAATAAT+AGG + chr1_2:48055577-48055596 None:intergenic 30.0%
AAATCACATGCAATTTGGTT+CGG + chr1_2:48055754-48055773 None:intergenic 30.0%
! ATTCATTTGACTTATAGGCA+GGG + chr1_2:48055895-48055914 None:intergenic 30.0%
! AGGAGATTCATTTGACTTAT+AGG + chr1_2:48055900-48055919 None:intergenic 30.0%
GTTAATGTTGGATTGTTTGT+TGG - chr1_2:48056031-48056050 Msa0073980:intron 30.0%
TAGCAAAGAAAGCTATGTAA+AGG - chr1_2:48056113-48056132 Msa0073980:CDS 30.0%
TAGGTATCAAACATTCTTCT+TGG - chr1_2:48056235-48056254 Msa0073980:intron 30.0%
AAACATTCTTCTTGGCTAAT+TGG - chr1_2:48056243-48056262 Msa0073980:intron 30.0%
! AAGAGTACACTGCATAAATA+TGG - chr1_2:48056358-48056377 Msa0073980:CDS 30.0%
TTAGGTAGGAAACATATGTA+GGG + chr1_2:48056421-48056440 None:intergenic 30.0%
TTTAGGTAGGAAACATATGT+AGG + chr1_2:48056422-48056441 None:intergenic 30.0%
! AAGAACATTTTGCAGCATAA+GGG - chr1_2:48056536-48056555 Msa0073980:intron 30.0%
GTACATAAGGTGATGTTATT+GGG + chr1_2:48056595-48056614 None:intergenic 30.0%
TGTACATAAGGTGATGTTAT+TGG + chr1_2:48056596-48056615 None:intergenic 30.0%
!!! TCTGCCATTTTTTGTACATA+AGG + chr1_2:48056608-48056627 None:intergenic 30.0%
CAAAAAATGGCAGATGATAA+TGG - chr1_2:48056614-48056633 Msa0073980:intron 30.0%
TCAGAGAATAATCCTCTTAT+TGG - chr1_2:48056677-48056696 Msa0073980:intron 30.0%
AGATCAAGGTGAAATTAGAA+AGG - chr1_2:48056700-48056719 Msa0073980:intron 30.0%
TATCGAATTGTAGAGATGTT+TGG - chr1_2:48056849-48056868 Msa0073980:intron 30.0%
TTGGATAATCCTCAAAATGA+AGG - chr1_2:48056868-48056887 Msa0073980:intron 30.0%
CTACTCTATACTGTATTAGT+TGG - chr1_2:48056930-48056949 Msa0073980:CDS 30.0%
AGGAAATAGGAATTAGAACG+AGG + chr1_2:48053404-48053423 None:intergenic 35.0%
GTAGGATAAGCAATAGAAAG+AGG + chr1_2:48053424-48053443 None:intergenic 35.0%
GACCAATATTTAAAGACCTG+TGG - chr1_2:48053498-48053517 Msa0073980:three_prime_UTR 35.0%
TGCCACAGGTCTTTAAATAT+TGG + chr1_2:48053503-48053522 None:intergenic 35.0%
ATATTATAGAGTGACCACCT+TGG - chr1_2:48053582-48053601 Msa0073980:three_prime_UTR 35.0%
AGATTACCAAAACGCAAAGT+AGG - chr1_2:48053714-48053733 Msa0073980:CDS 35.0%
! TGATAACCTACTTTGCGTTT+TGG + chr1_2:48053723-48053742 None:intergenic 35.0%
AAATCTCTTCCATGATTGCA+TGG - chr1_2:48054043-48054062 Msa0073980:intron 35.0%
! AGACATCGGTAAGAAGTTTT+GGG - chr1_2:48054211-48054230 Msa0073980:CDS 35.0%
TGCCATCATATACACATGTT+AGG - chr1_2:48054357-48054376 Msa0073980:intron 35.0%
CTCCTAACATGTGTATATGA+TGG + chr1_2:48054362-48054381 None:intergenic 35.0%
!! TATTTGCATCCTTTTAGGGA+CGG + chr1_2:48054389-48054408 None:intergenic 35.0%
! GAGCTATTTGCATCCTTTTA+GGG + chr1_2:48054393-48054412 None:intergenic 35.0%
! TGAGCTATTTGCATCCTTTT+AGG + chr1_2:48054394-48054413 None:intergenic 35.0%
! AAAATTGGACCCCCAAATTT+TGG + chr1_2:48054431-48054450 None:intergenic 35.0%
!!! ATTTTTTTTTTGGTGGTGGC+CGG + chr1_2:48054588-48054607 None:intergenic 35.0%
AGAGAGTTGGATTGAATTGA+AGG + chr1_2:48054763-48054782 None:intergenic 35.0%
! AGGGTTTCTTCATTTTCTTC+TGG - chr1_2:48055013-48055032 Msa0073980:intron 35.0%
!!! TCTGGGATTTTTGTTGTTGA+AGG - chr1_2:48055042-48055061 Msa0073980:intron 35.0%
TACGAGTATGGGAAAAAAGT+TGG + chr1_2:48055261-48055280 None:intergenic 35.0%
TAACATATACTTATGCGGAG+CGG + chr1_2:48055364-48055383 None:intergenic 35.0%
TGTCTATATTTGGATCGGAT+CGG - chr1_2:48055699-48055718 Msa0073980:intron 35.0%
GTTTACGATGTGGTTTAGAT+CGG + chr1_2:48055810-48055829 None:intergenic 35.0%
!! AATTAGAGGTGTTTACGATG+TGG + chr1_2:48055820-48055839 None:intergenic 35.0%
! GATTCATTTGACTTATAGGC+AGG + chr1_2:48055896-48055915 None:intergenic 35.0%
CCACTCTTCATTTCAATGTT+TGG + chr1_2:48056084-48056103 None:intergenic 35.0%
CCAAACATTGAAATGAAGAG+TGG - chr1_2:48056081-48056100 Msa0073980:CDS 35.0%
TTGAAATGAAGAGTGGAAGA+AGG - chr1_2:48056088-48056107 Msa0073980:CDS 35.0%
TGAAATGAAGAGTGGAAGAA+GGG - chr1_2:48056089-48056108 Msa0073980:CDS 35.0%
CAAAGAAAGCTATGTAAAGG+TGG - chr1_2:48056116-48056135 Msa0073980:CDS 35.0%
! TTGGTCACTTTGATTGAATC+AGG - chr1_2:48056320-48056339 Msa0073980:CDS 35.0%
!! GTTTTGGACATCTACGTTTT+AGG + chr1_2:48056439-48056458 None:intergenic 35.0%
ATGTCCAAAACCAAATCCAA+AGG - chr1_2:48056448-48056467 Msa0073980:intron 35.0%
!! TTTGCCTTTGGATTTGGTTT+TGG + chr1_2:48056455-48056474 None:intergenic 35.0%
! CAAGAACATTTTGCAGCATA+AGG - chr1_2:48056535-48056554 Msa0073980:intron 35.0%
ACTTCAATGAGCAATTCTCA+AGG - chr1_2:48056639-48056658 Msa0073980:intron 35.0%
CTTCAATGAGCAATTCTCAA+GGG - chr1_2:48056640-48056659 Msa0073980:intron 35.0%
AATCCTCTTATTGGAGATCA+AGG - chr1_2:48056686-48056705 Msa0073980:intron 35.0%
! CACTCATGAAATTTTGCCAC+AGG + chr1_2:48053517-48053536 None:intergenic 40.0%
TGATTATCTCTTCGGCTCTT+GGG + chr1_2:48053968-48053987 None:intergenic 40.0%
TTGATTATCTCTTCGGCTCT+TGG + chr1_2:48053969-48053988 None:intergenic 40.0%
TCACATTGACCATGCAATCA+TGG + chr1_2:48054055-48054074 None:intergenic 40.0%
! CATCGTTTCTTTTAGCAACG+TGG - chr1_2:48054169-48054188 Msa0073980:CDS 40.0%
! CAGACATCGGTAAGAAGTTT+TGG - chr1_2:48054210-48054229 Msa0073980:CDS 40.0%
! TTTCTCAACAGCAGCTTTGA+TGG + chr1_2:48054262-48054281 None:intergenic 40.0%
TCAGCACATGATACTGTCAA+GGG + chr1_2:48054291-48054310 None:intergenic 40.0%
ATCAGCACATGATACTGTCA+AGG + chr1_2:48054292-48054311 None:intergenic 40.0%
GCATAGACATACCATTGCAA+TGG + chr1_2:48054340-48054359 None:intergenic 40.0%
!! ATTTGCATCCTTTTAGGGAC+GGG + chr1_2:48054388-48054407 None:intergenic 40.0%
! CAAATTTTGGATTCCCAGCT+CGG + chr1_2:48054418-48054437 None:intergenic 40.0%
GAGCTGGGAATCCAAAATTT+GGG - chr1_2:48054417-48054436 Msa0073980:intron 40.0%
AGCTGGGAATCCAAAATTTG+GGG - chr1_2:48054418-48054437 Msa0073980:intron 40.0%
GCACTGCATAGTATATGCAA+AGG - chr1_2:48054547-48054566 Msa0073980:intron 40.0%
GCATAGTATATGCAAAGGTC+CGG - chr1_2:48054552-48054571 Msa0073980:intron 40.0%
CATAGTATATGCAAAGGTCC+GGG - chr1_2:48054553-48054572 Msa0073980:intron 40.0%
ATAGTATATGCAAAGGTCCG+GGG - chr1_2:48054554-48054573 Msa0073980:intron 40.0%
!!! TTTTTTTTTTGGTGGTGGCC+GGG + chr1_2:48054587-48054606 None:intergenic 40.0%
ATATTTGGATCGGATCGGTT+CGG - chr1_2:48055704-48055723 Msa0073980:intron 40.0%
!! TGTGGTTTAGATCGGTTTTG+AGG + chr1_2:48055802-48055821 None:intergenic 40.0%
TTCCTGTGAAATTGGAGATC+CGG + chr1_2:48055856-48055875 None:intergenic 40.0%
AGAAAGCTATGTAAAGGTGG+TGG - chr1_2:48056119-48056138 Msa0073980:CDS 40.0%
CAACATCAACACCAATAGCT+TGG + chr1_2:48056197-48056216 None:intergenic 40.0%
!! TGGACATCTACGTTTTAGGT+AGG + chr1_2:48056435-48056454 None:intergenic 40.0%
! ACAGCTTTTGCCTTTGGATT+TGG + chr1_2:48056461-48056480 None:intergenic 40.0%
! TATTCGACAGCTTTTGCCTT+TGG + chr1_2:48056467-48056486 None:intergenic 40.0%
CAAAAGCTGTCGAATATGTG+AGG - chr1_2:48056471-48056490 Msa0073980:intron 40.0%
TCACCTTGATCTCCAATAAG+AGG + chr1_2:48056692-48056711 None:intergenic 40.0%
ATCATGTGATCCGTCTAACC+AGG - chr1_2:48053789-48053808 Msa0073980:CDS 45.0%
AAAAGTGAGTTGTCTGCTCC+TGG + chr1_2:48053810-48053829 None:intergenic 45.0%
GAGATTTCGAAGCCACGAAA+TGG + chr1_2:48054030-48054049 None:intergenic 45.0%
! TTTCTTTTAGCAACGTGGCG+TGG - chr1_2:48054174-48054193 Msa0073980:CDS 45.0%
CGAGCTGGGAATCCAAAATT+TGG - chr1_2:48054416-48054435 Msa0073980:intron 45.0%
GCTGGGAATCCAAAATTTGG+GGG - chr1_2:48054419-48054438 Msa0073980:intron 45.0%
!!! TTTTTTTTTGGTGGTGGCCG+GGG + chr1_2:48054586-48054605 None:intergenic 45.0%
! CGCGAGAAGCATATCATATC+AGG - chr1_2:48054610-48054629 Msa0073980:intron 45.0%
TTTCCAACATGAGAGGGACT+TGG - chr1_2:48054680-48054699 Msa0073980:intron 45.0%
AAACCAAGTCCCTCTCATGT+TGG + chr1_2:48054686-48054705 None:intergenic 45.0%
!! ACATGAGAGGGACTTGGTTT+TGG - chr1_2:48054686-48054705 Msa0073980:intron 45.0%
TATACTTATGCGGAGCGGTT+CGG + chr1_2:48055359-48055378 None:intergenic 45.0%
! CATTTGACTTATAGGCAGGG+CGG + chr1_2:48055892-48055911 None:intergenic 45.0%
!! GGAGGCATTATGGTTTGGAA+TGG + chr1_2:48056151-48056170 None:intergenic 45.0%
!! GACATGGAGGCATTATGGTT+TGG + chr1_2:48056156-48056175 None:intergenic 45.0%
TTGGAAACGAGTGAGAACCA+AGG + chr1_2:48056178-48056197 None:intergenic 45.0%
CTCACTCGTTTCCAAGCTAT+TGG - chr1_2:48056183-48056202 Msa0073980:intron 45.0%
!! TGGTGTTGATGTTGAAGCCA+CGG - chr1_2:48056203-48056222 Msa0073980:intron 45.0%
GATACCTAAAAGAGCAACCG+TGG + chr1_2:48056223-48056242 None:intergenic 45.0%
! TGAATCAGGAGCACATTCAG+TGG - chr1_2:48056334-48056353 Msa0073980:CDS 45.0%
! GAATCAGGAGCACATTCAGT+GGG - chr1_2:48056335-48056354 Msa0073980:CDS 45.0%
! TCTAGCGTTGGATCCACTAT+GGG + chr1_2:48056398-48056417 None:intergenic 45.0%
ACATATGTAGGGTCTAGCGT+TGG + chr1_2:48056410-48056429 None:intergenic 45.0%
AGGTGATGTTATTGGGTCAG+TGG + chr1_2:48056588-48056607 None:intergenic 45.0%
!!! AATAAATCAAATTTTAATTA+AGG + chr1_2:48055185-48055204 None:intergenic 5.0%
!!! AATTAAAATTTGATTTATTT+TGG + chr1_2:48054927-48054946 None:intergenic 5.0%
GTTGTCTGCTCCTGGTTAGA+CGG + chr1_2:48053802-48053821 None:intergenic 50.0%
AGTAGTAGTTCAGCTGGAGC+TGG + chr1_2:48053935-48053954 None:intergenic 50.0%
TGGTGGAGTAGTAGTTCAGC+TGG + chr1_2:48053941-48053960 None:intergenic 50.0%
! AAGGAAGCACAGCCATTTCG+TGG - chr1_2:48054015-48054034 Msa0073980:intron 50.0%
! TGTGGTATCGGAGCAGACAT+CGG - chr1_2:48054197-48054216 Msa0073980:CDS 50.0%
TGCTAGAGACGCCATTGCAA+TGG - chr1_2:48054326-48054345 Msa0073980:intron 50.0%
! TGAGCGTAGCTCAGTTGGTA+TGG - chr1_2:48054524-48054543 Msa0073980:intron 50.0%
! GAGCGTAGCTCAGTTGGTAT+GGG - chr1_2:48054525-48054544 Msa0073980:intron 50.0%
AGCCGGATCTCCAATTTCAC+AGG - chr1_2:48055851-48055870 Msa0073980:intron 50.0%
!! CCAAGGACATGGAGGCATTA+TGG + chr1_2:48056161-48056180 None:intergenic 50.0%
CCATAATGCCTCCATGTCCT+TGG - chr1_2:48056158-48056177 Msa0073980:CDS 50.0%
AGTGAGAACCAAGGACATGG+AGG + chr1_2:48056169-48056188 None:intergenic 50.0%
ACGAGTGAGAACCAAGGACA+TGG + chr1_2:48056172-48056191 None:intergenic 50.0%
! GAAGCCACGGTTGCTCTTTT+AGG - chr1_2:48056216-48056235 Msa0073980:intron 50.0%
CCACTATGGGGTATAGTCTG+TGG + chr1_2:48056385-48056404 None:intergenic 50.0%
CCACAGACTATACCCCATAG+TGG - chr1_2:48056382-48056401 Msa0073980:CDS 50.0%
! CTAGCGTTGGATCCACTATG+GGG + chr1_2:48056397-48056416 None:intergenic 50.0%
! GTCTAGCGTTGGATCCACTA+TGG + chr1_2:48056399-48056418 None:intergenic 50.0%
GCATAAGGGTCTTCTCACTG+TGG - chr1_2:48056550-48056569 Msa0073980:intron 50.0%
TTTAGCAACGTGGCGTGGTG+TGG - chr1_2:48054179-48054198 Msa0073980:CDS 55.0%
AACGTGGCGTGGTGTGGTAT+CGG - chr1_2:48054185-48054204 Msa0073980:CDS 55.0%
AGGAGTTGCCCGTCCCTAAA+AGG - chr1_2:48054377-48054396 Msa0073980:intron 55.0%
TGCAAATAGCTCAGCCGAGC+TGG - chr1_2:48054401-48054420 Msa0073980:intron 55.0%
GCAAATAGCTCAGCCGAGCT+GGG - chr1_2:48054402-48054421 Msa0073980:intron 55.0%
CCAACTGAGCTACGCTCACA+AGG + chr1_2:48054522-48054541 None:intergenic 55.0%
CCTTGTGAGCGTAGCTCAGT+TGG - chr1_2:48054519-48054538 Msa0073980:intron 55.0%
AAGGTCCGGGGTTAAAACCC+CGG - chr1_2:48054566-48054585 Msa0073980:intron 55.0%
!! TTATGCGGAGCGGTTCGGTT+CGG + chr1_2:48055354-48055373 None:intergenic 55.0%
GGCGGCACTTCCTGTGAAAT+TGG + chr1_2:48055864-48055883 None:intergenic 55.0%
TTCGGCTCTTGGGCAGCTGG+TGG + chr1_2:48053958-48053977 None:intergenic 65.0%
CTCTTCGGCTCTTGGGCAGC+TGG + chr1_2:48053961-48053980 None:intergenic 65.0%
!! GGTGGCCGGGGTTTTAACCC+CGG + chr1_2:48054574-48054593 None:intergenic 65.0%
CTTATAGGCAGGGCGGCGCA+AGG + chr1_2:48055885-48055904 None:intergenic 65.0%
ATAGGCAGGGCGGCGCAAGG+CGG + chr1_2:48055882-48055901 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 48053368 48056989 48053368 ID=Msa0073980;Name=Msa0073980
chr1_2 mRNA 48053368 48056989 48053368 ID=Msa0073980-mRNA-1;Parent=Msa0073980;Name=Msa0073980-mRNA-1;_AED=0.31;_eAED=0.31;_QI=21|0.8|0.83|1|0.4|0.33|6|220|313
chr1_2 exon 48053368 48053552 48053368 ID=Msa0073980-mRNA-1:exon:14619;Parent=Msa0073980-mRNA-1
chr1_2 exon 48053574 48054015 48053574 ID=Msa0073980-mRNA-1:exon:14618;Parent=Msa0073980-mRNA-1
chr1_2 exon 48054120 48054285 48054120 ID=Msa0073980-mRNA-1:exon:14617;Parent=Msa0073980-mRNA-1
chr1_2 exon 48056043 48056198 48056043 ID=Msa0073980-mRNA-1:exon:14616;Parent=Msa0073980-mRNA-1
chr1_2 exon 48056287 48056432 48056287 ID=Msa0073980-mRNA-1:exon:14615;Parent=Msa0073980-mRNA-1
chr1_2 exon 48056902 48056989 48056902 ID=Msa0073980-mRNA-1:exon:14614;Parent=Msa0073980-mRNA-1
chr1_2 five_prime_UTR 48056969 48056989 48056969 ID=Msa0073980-mRNA-1:five_prime_utr;Parent=Msa0073980-mRNA-1
chr1_2 CDS 48056902 48056968 48056902 ID=Msa0073980-mRNA-1:cds;Parent=Msa0073980-mRNA-1
chr1_2 CDS 48056287 48056432 48056287 ID=Msa0073980-mRNA-1:cds;Parent=Msa0073980-mRNA-1
chr1_2 CDS 48056043 48056198 48056043 ID=Msa0073980-mRNA-1:cds;Parent=Msa0073980-mRNA-1
chr1_2 CDS 48054120 48054285 48054120 ID=Msa0073980-mRNA-1:cds;Parent=Msa0073980-mRNA-1
chr1_2 CDS 48053609 48054015 48053609 ID=Msa0073980-mRNA-1:cds;Parent=Msa0073980-mRNA-1
chr1_2 three_prime_UTR 48053574 48053608 48053574 ID=Msa0073980-mRNA-1:three_prime_utr;Parent=Msa0073980-mRNA-1
chr1_2 three_prime_UTR 48053368 48053552 48053368 ID=Msa0073980-mRNA-1:three_prime_utr;Parent=Msa0073980-mRNA-1
Gene Sequence

>Msa0073980

ATGGATAACAAGCCTCGTTCTAATTCCTATTTCCTCTTTCTATTGCTTATCCTACATTTTAACTTGGGGAAAAGCCAGCTCCAGCTGAACTACTACTCCACCAGCTGCCCAAGAGCCGAAGAGATAATCAAGCAACAAGTCACTGAACTATATAATCAAGGAAGCACAGCCATTTCGTGGCTTCGAAATCTCTTCCATGATTGCATGGTCAATTCATGCGATGCATCGTTTCTTTTAGCAACGTGGCGTGGTGTGGTATCGGAGCAGACATCGGTAAGAAGTTTTGGGATGAGAAATTTCAAGTACGTGAACACCATCAAAGCTGCTGTTGAGAAAGAATGTCCCTTGACAGTATCATGTGCTGATATTTTAGGAATTCCAAACATTGAAATGAAGAGTGGAAGAAGGGATAGCAAAGAAAGCTATGTAAAGGTGGTGGAAGAATCCATTCCAAACCATAATGCCTCCATGTCCTTGGTTCTCACTCGTTTCCAAGCTATTGGTGTTGATGTTGAAGCCACGGTTGCTCTTTTAGGAGCACATTCAGTGGGAAGAGTACACTGCATAAATATGGTCCACAGACTATACCCCATAGTGGATCCAACGCTAGACCCTACATATGTTTCCTACCTAAAACGTAGATGTCCAAAACCAAATCCAAAGGCAAAAGCTGTCGAATATGTGAGGAATGATCTAAAAACTCCATTGATAATTGATAACAACTACTACAAGAACATTTTGCAGCATAAGGGTCTTCTCACTGTGGATGAAGAACTAGCCACTGACCCAATAACATCACCTTATGTACAAAAAATGGCAGATGATAATGGTTACTTCAATGAGCAATTCTCAAGGGCTGTTCTTTTGTTATCAGAGAATAATCCTCTTATTGGAGATCAAGGTGAAATTAGAAAGGATTGTCGCTTCGTTAATGCCAAATAG
Protein sequence

>Msa0073980

MDNKPRSNSYFLFLLLILHFNLGKSQLQLNYYSTSCPRAEEIIKQQVTELYNQGSTAISWLRNLFHDCMVNSCDASFLLATWRGVVSEQTSVRSFGMRNFKYVNTIKAAVEKECPLTVSCADILGIPNIEMKSGRRDSKESYVKVVEESIPNHNASMSLVLTRFQAIGVDVEATVALLGAHSVGRVHCINMVHRLYPIVDPTLDPTYVSYLKRRCPKPNPKAKAVEYVRNDLKTPLIIDNNYYKNILQHKGLLTVDEELATDPITSPYVQKMADDNGYFNEQFSRAVLLLSENNPLIGDQGEIRKDCRFVNAK*