Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0074920 | XP_013468403.1 | 83.967 | 368 | 12 | 4 | 1 | 321 | 1 | 368 | 0.0 | 599 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0074920 | A0A072VWJ0 | 83.967 | 368 | 12 | 4 | 1 | 321 | 1 | 368 | 0.0 | 575 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0074920 | Msa0269780 | 0.902421 | 9.864689e-79 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0074920 | MtrunA17_Chr1g0183031 | 83.967 | 368 | 12 | 4 | 1 | 321 | 1 | 368 | 0.0 | 575 |
| Msa0074920 | MtrunA17_Chr7g0262551 | 55.989 | 359 | 112 | 3 | 9 | 321 | 6 | 364 | 5.60e-140 | 400 |
| Msa0074920 | MtrunA17_Chr1g0183021 | 55.153 | 359 | 115 | 3 | 9 | 321 | 108 | 466 | 2.45e-129 | 377 |
| Msa0074920 | MtrunA17_Chr7g0262571 | 51.771 | 367 | 131 | 3 | 1 | 321 | 53 | 419 | 2.28e-126 | 367 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0074920 | AT4G28706.3 | 52.528 | 356 | 123 | 3 | 11 | 320 | 47 | 402 | 2.17e-127 | 370 |
| Msa0074920 | AT4G28706.1 | 52.528 | 356 | 123 | 3 | 11 | 320 | 45 | 400 | 2.53e-127 | 370 |
| Msa0074920 | AT4G28706.2 | 52.381 | 357 | 123 | 4 | 11 | 320 | 47 | 403 | 1.15e-125 | 365 |
| Msa0074920 | AT4G28706.4 | 52.235 | 358 | 124 | 4 | 11 | 321 | 47 | 404 | 5.31e-125 | 365 |
| Msa0074920 | AT5G43910.2 | 44.022 | 368 | 155 | 5 | 1 | 321 | 1 | 364 | 1.47e-96 | 290 |
| Msa0074920 | AT5G43910.4 | 41.768 | 328 | 152 | 4 | 1 | 293 | 1 | 324 | 2.79e-78 | 242 |
| Msa0074920 | AT5G43910.5 | 41.696 | 283 | 130 | 3 | 1 | 248 | 1 | 283 | 1.37e-68 | 216 |
| Msa0074920 | AT5G43910.1 | 41.281 | 281 | 130 | 3 | 1 | 246 | 1 | 281 | 3.39e-68 | 215 |
| Msa0074920 | AT5G43910.3 | 41.877 | 277 | 126 | 3 | 1 | 242 | 1 | 277 | 5.04e-68 | 214 |
Find 116 sgRNAs with CRISPR-Local
Find 409 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTGTACTTCTAAGTTTC+TGG | 0.136833 | 1_2:-49967746 | Msa0074920:three_prime_UTR |
| AAGCTTACCAAACAAGTTTA+AGG | 0.156663 | 1_2:+49967478 | None:intergenic |
| TATTATTGTATAGTATTATT+TGG | 0.168122 | 1_2:+49974444 | None:intergenic |
| CAACTAAGATGGATATATTT+TGG | 0.178686 | 1_2:+49969781 | None:intergenic |
| CTATTCTTGGTGTCTGGTTT+TGG | 0.209515 | 1_2:+49974038 | None:intergenic |
| GTTGTTCTAAATTAAATTTA+AGG | 0.225336 | 1_2:-49967698 | Msa0074920:three_prime_UTR |
| GAATTGAGTGGTTCTATTCT+TGG | 0.228607 | 1_2:+49974025 | None:intergenic |
| TTACAATGTATTGTTAAATA+AGG | 0.234535 | 1_2:-49967508 | Msa0074920:three_prime_UTR |
| GTATGTGGGAGGTTATATTT+TGG | 0.242581 | 1_2:-49968662 | Msa0074920:CDS |
| AAATTTGTAGAGACATTATT+TGG | 0.267752 | 1_2:-49967612 | Msa0074920:three_prime_UTR |
| TAAATTTGTGATTGCAACTT+TGG | 0.288479 | 1_2:-49969497 | Msa0074920:CDS |
| TGAAAGTTGAAGAAGGTTAA+TGG | 0.294883 | 1_2:+49974607 | None:intergenic |
| CTTACATCCTTAAACTTGTT+TGG | 0.298151 | 1_2:-49967485 | Msa0074920:three_prime_UTR |
| AATTTCTGCCATGGTGAAAT+TGG | 0.300417 | 1_2:+49974494 | None:intergenic |
| GTGTTGGAAGACATTAATTA+AGG | 0.307724 | 1_2:+49974235 | None:intergenic |
| CAGGTTGGGTTTGGTGGCGT+TGG | 0.319074 | 1_2:-49974092 | Msa0074920:CDS |
| GGAAGGATTGAATGACCTTC+TGG | 0.319125 | 1_2:-49969742 | Msa0074920:CDS |
| CATAGACCAACAACTTCTTT+AGG | 0.331164 | 1_2:+49967532 | None:intergenic |
| ACTTGTTTGGTAAGCTTACT+TGG | 0.332520 | 1_2:-49967472 | Msa0074920:three_prime_UTR |
| TTTGTGTGGCAGGTTGGGTT+TGG | 0.343196 | 1_2:-49974101 | Msa0074920:intron |
| TTAATAAAGTATGCCAGGTT+TGG | 0.355803 | 1_2:+49967879 | None:intergenic |
| AGGCATCCTAACATCAAAAT+AGG | 0.360561 | 1_2:+49970095 | None:intergenic |
| TCAATAATAATGTAGCTAAA+TGG | 0.361983 | 1_2:+49970565 | None:intergenic |
| GCAGTTCGTGTTCATCGGTT+TGG | 0.369571 | 1_2:+49974679 | None:intergenic |
| GTGGTTCTATTCTTGGTGTC+TGG | 0.388614 | 1_2:+49974032 | None:intergenic |
| TGGTAAGCTTACTTGGTAAT+CGG | 0.395404 | 1_2:-49967465 | Msa0074920:three_prime_UTR |
| TGTCTTCCTAAAGAAGTTGT+TGG | 0.399127 | 1_2:-49967538 | Msa0074920:three_prime_UTR |
| AAATTTGTGATTGCAACTTT+GGG | 0.399648 | 1_2:-49969496 | Msa0074920:CDS |
| TAAAGTGTCACTTGGTAGAT+TGG | 0.403907 | 1_2:-49967570 | Msa0074920:three_prime_UTR |
| AGGTTTGGATCAGTGCGATA+TGG | 0.407682 | 1_2:+49967894 | None:intergenic |
| TCTCTTTCAGTTTCCCTGGC+AGG | 0.415081 | 1_2:-49974283 | Msa0074920:intron |
| GCAATCACAAATTTAAGTCT+TGG | 0.419317 | 1_2:+49969505 | None:intergenic |
| GTGTGGCAGGTTGGGTTTGG+TGG | 0.423838 | 1_2:-49974098 | Msa0074920:intron |
| CCATTCCTACCACCGCGTAT+AGG | 0.428040 | 1_2:-49974635 | Msa0074920:five_prime_UTR |
| TGTGGATACTTCTTCATTTG+TGG | 0.428757 | 1_2:-49970854 | Msa0074920:intron |
| ATTGAATGACCTTCTGGACT+TGG | 0.430538 | 1_2:-49969736 | Msa0074920:CDS |
| CCTTTCAGCATCAACTAAGA+TGG | 0.434238 | 1_2:+49969770 | None:intergenic |
| TTTGCACGCGAAAGATCTTC+CGG | 0.437545 | 1_2:+49970150 | None:intergenic |
| GCAATGACAAGAGCAGTTGC+AGG | 0.440063 | 1_2:+49970075 | None:intergenic |
| TAATTAGAGCCTCAAATATC+CGG | 0.446017 | 1_2:-49967859 | Msa0074920:exon |
| AGAATTGAAACTAGTGCTCT+TGG | 0.449446 | 1_2:+49969538 | None:intergenic |
| CGAATGCAGTTCGTGTTCAT+CGG | 0.452772 | 1_2:+49974674 | None:intergenic |
| GAATAGAACCACTCAATTCA+AGG | 0.452926 | 1_2:-49974021 | Msa0074920:intron |
| GCTGCTCAATGTAGAGCTCT+TGG | 0.454335 | 1_2:-49967933 | Msa0074920:CDS |
| AGATCTTCCGGTACCATTGT+AGG | 0.463214 | 1_2:+49970162 | None:intergenic |
| TGCTCTTGTCATTGCTAAAG+AGG | 0.464049 | 1_2:-49970067 | Msa0074920:intron |
| CTCAGCAGCATCACAGAGAC+TGG | 0.464348 | 1_2:+49967636 | None:intergenic |
| TATGAAAATAATACTAGTAT+TGG | 0.464848 | 1_2:-49974559 | Msa0074920:five_prime_UTR |
| AACTTCTCTTTCAGTTTCCC+TGG | 0.470342 | 1_2:-49974287 | Msa0074920:intron |
| TCTAATTAATAAAGTATGCC+AGG | 0.474893 | 1_2:+49967874 | None:intergenic |
| TCGGAGCTTATTGATACAAC+TGG | 0.481009 | 1_2:-49968617 | Msa0074920:intron |
| CTAGGTTGCAAATGACGCTC+AGG | 0.489161 | 1_2:-49970911 | Msa0074920:intron |
| AGGGAGAGGAAAAGCAGTGT+TGG | 0.491482 | 1_2:+49974219 | None:intergenic |
| AAATTGTTATCTGCATTGAA+TGG | 0.495412 | 1_2:-49970129 | Msa0074920:CDS |
| GGAGCTAGAAGCTGAGGGTG+TGG | 0.495904 | 1_2:-49970872 | Msa0074920:CDS |
| GAAATCTTTAACAATGAGAA+AGG | 0.497680 | 1_2:-49969286 | Msa0074920:CDS |
| TGCAAATGACGCTCAGGGTA+GGG | 0.500517 | 1_2:-49970905 | Msa0074920:CDS |
| AAGCTTGTTAATTTCTGCCA+TGG | 0.505410 | 1_2:+49974485 | None:intergenic |
| GTTACAAAATTTAGAGCAGA+CGG | 0.513539 | 1_2:-49968695 | Msa0074920:CDS |
| TGCATTCGATTCAGACAAAA+CGG | 0.516194 | 1_2:-49974659 | Msa0074920:five_prime_UTR |
| TGTTTCCAGGTCTCAAAGGA+AGG | 0.519022 | 1_2:-49970595 | Msa0074920:intron |
| CCTATACGCGGTGGTAGGAA+TGG | 0.519453 | 1_2:+49974635 | None:intergenic |
| TGACTTGTGAAAGTTGAAGA+AGG | 0.520049 | 1_2:+49974600 | None:intergenic |
| CATGCCAACCTGCGTTGCCT+CGG | 0.527612 | 1_2:-49969250 | Msa0074920:intron |
| GACGGGATAGGATCAGTATG+TGG | 0.528060 | 1_2:-49968677 | Msa0074920:CDS |
| AAATTTAGAGCAGACGGGAT+AGG | 0.530754 | 1_2:-49968689 | Msa0074920:CDS |
| CGAGGCAACGCAGGTTGGCA+TGG | 0.530850 | 1_2:+49969251 | None:intergenic |
| AGGTCATTCAATCCTTCCCT+TGG | 0.534609 | 1_2:+49969747 | None:intergenic |
| AAGAAGACACTCACAATGAC+AGG | 0.535206 | 1_2:+49974190 | None:intergenic |
| TAGTTGATGCTGAAAGGCCA+AGG | 0.535644 | 1_2:-49969764 | Msa0074920:CDS |
| AATGTAGAGCTCTTGGAGCT+AGG | 0.538329 | 1_2:-49967926 | Msa0074920:CDS |
| GGGTTCACACTTAGAAGAAG+TGG | 0.542271 | 1_2:-49969325 | Msa0074920:CDS |
| GATAGAGGAGCTAGAAGCTG+AGG | 0.543786 | 1_2:-49970878 | Msa0074920:CDS |
| TTGCAAATGACGCTCAGGGT+AGG | 0.550449 | 1_2:-49970906 | Msa0074920:CDS |
| TCCTACCACCGCGTATAGGA+AGG | 0.550545 | 1_2:-49974631 | Msa0074920:five_prime_UTR |
| CCATCTTAGTTGATGCTGAA+AGG | 0.556239 | 1_2:-49969770 | Msa0074920:CDS |
| AGGATCTCCTACAATGGTAC+CGG | 0.559044 | 1_2:-49970169 | Msa0074920:CDS |
| CATTTGTTTCCAGGTCTCAA+AGG | 0.562119 | 1_2:-49970599 | Msa0074920:intron |
| AGCTATTACCGAGGCAACGC+AGG | 0.562817 | 1_2:+49969242 | None:intergenic |
| TGCATTGAATGGAGCTAGAG+TGG | 0.563511 | 1_2:-49970118 | Msa0074920:CDS |
| GCTTACCACATGAGAAGCAA+AGG | 0.564484 | 1_2:+49968249 | None:intergenic |
| GTTTCCAGGTCTCAAAGGAA+GGG | 0.571955 | 1_2:-49970594 | Msa0074920:intron |
| ATATCGCACTGATCCAAACC+TGG | 0.578250 | 1_2:-49967892 | Msa0074920:CDS |
| CACAGAAGGATCTCCTACAA+TGG | 0.585278 | 1_2:-49970175 | Msa0074920:CDS |
| GCATAATAACCAACCTAGGG+GGG | 0.586148 | 1_2:+49974367 | None:intergenic |
| ACACTTAGAAGAAGTGGATG+TGG | 0.593132 | 1_2:-49969319 | Msa0074920:CDS |
| CATAATCAGCCAAGTCCAGA+AGG | 0.594681 | 1_2:+49969727 | None:intergenic |
| ATGCTTCAGAAATGTGCAGA+TGG | 0.596169 | 1_2:-49969457 | Msa0074920:intron |
| TTACAAAATTTAGAGCAGAC+GGG | 0.602375 | 1_2:-49968694 | Msa0074920:CDS |
| GTTGTATCAATAAGCTCCGA+TGG | 0.602597 | 1_2:+49968620 | None:intergenic |
| ATTACCGAGGCAACGCAGGT+TGG | 0.609993 | 1_2:+49969246 | None:intergenic |
| TCAAAATCCTCAGCATAACA+AGG | 0.610008 | 1_2:-49967833 | Msa0074920:three_prime_UTR |
| GTTGCCCTTTGCTTCTCATG+TGG | 0.613678 | 1_2:-49968254 | Msa0074920:intron |
| CTTACCACATGAGAAGCAAA+GGG | 0.616843 | 1_2:+49968250 | None:intergenic |
| CGAACATGTATATTCACAGA+AGG | 0.631793 | 1_2:-49970189 | Msa0074920:CDS |
| TAAGCTTACTTGGTAATCGG+TGG | 0.631985 | 1_2:-49967462 | Msa0074920:three_prime_UTR |
| GCTGAAGCCTTGTTATGCTG+AGG | 0.632019 | 1_2:+49967826 | None:intergenic |
| ACGGGATAGGATCAGTATGT+GGG | 0.632094 | 1_2:-49968676 | Msa0074920:CDS |
| GATGCTGAAAGGCCAAGGGA+AGG | 0.639502 | 1_2:-49969759 | Msa0074920:CDS |
| CCCTTCCTATACGCGGTGGT+AGG | 0.639649 | 1_2:+49974630 | None:intergenic |
| AAATGCTATAAAGTGTCACT+TGG | 0.642035 | 1_2:-49967578 | Msa0074920:three_prime_UTR |
| CATAATAACCAACCTAGGGG+GGG | 0.642802 | 1_2:+49974368 | None:intergenic |
| AGCATAATAACCAACCTAGG+GGG | 0.643283 | 1_2:+49974366 | None:intergenic |
| ATAGAGGAGCTAGAAGCTGA+GGG | 0.648546 | 1_2:-49970877 | Msa0074920:CDS |
| ATTGCAACTTTGGGAAAAGA+CGG | 0.651143 | 1_2:-49969487 | Msa0074920:CDS |
| AGGATGAACCTTGAATTGAG+TGG | 0.655549 | 1_2:+49974013 | None:intergenic |
| AGAGCTCTTGGAGCTAGGAG+TGG | 0.656252 | 1_2:-49967921 | Msa0074920:CDS |
| TAGGTTGCAAATGACGCTCA+GGG | 0.659046 | 1_2:-49970910 | Msa0074920:CDS |
| CCTACCACCGCGTATAGGAA+GGG | 0.665317 | 1_2:-49974630 | Msa0074920:five_prime_UTR |
| AGTTGATGCTGAAAGGCCAA+GGG | 0.668854 | 1_2:-49969763 | Msa0074920:CDS |
| GTATCAATAAGCTCCGATGG+TGG | 0.679992 | 1_2:+49968623 | None:intergenic |
| GGATAGGATCAGTATGTGGG+AGG | 0.683588 | 1_2:-49968673 | Msa0074920:CDS |
| ATGGCCCTTCCTATACGCGG+TGG | 0.686587 | 1_2:+49974626 | None:intergenic |
| ACTCTTGACCAATTTCACCA+TGG | 0.703995 | 1_2:-49974502 | Msa0074920:five_prime_UTR |
| CATTTCACAGACATGGACAG+AGG | 0.705633 | 1_2:-49969572 | Msa0074920:intron |
| TTAATGGCCCTTCCTATACG+CGG | 0.757508 | 1_2:+49974623 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATTGTATAGTATTATT+TGG | + | chr1_2:49967654-49967673 | None:intergenic | 10.0% |
| !! | TTGTCAAAAAAATATAATTA+CGG | - | chr1_2:49968197-49968216 | Msa0074920:intron | 10.0% |
| !!! | GCTAATTATATTTTAAATAT+TGG | - | chr1_2:49969158-49969177 | Msa0074920:intron | 10.0% |
| !!! | GATATATTTTATTTTAGATA+TGG | + | chr1_2:49971373-49971392 | None:intergenic | 10.0% |
| !! | TATGAAAATAATACTAGTAT+TGG | - | chr1_2:49967536-49967555 | Msa0074920:three_prime_UTR | 15.0% |
| !! | ATTGTAATAATAAAAACACA+AGG | + | chr1_2:49968119-49968138 | None:intergenic | 15.0% |
| !! | AAAAACAAATCTTATGTATA+AGG | - | chr1_2:49968302-49968321 | Msa0074920:intron | 15.0% |
| !! | TTTATTATACATACAAACAA+AGG | + | chr1_2:49969479-49969498 | None:intergenic | 15.0% |
| !! | ACAAATTAGTAGTATTAATT+AGG | - | chr1_2:49969520-49969539 | Msa0074920:CDS | 15.0% |
| !! | CAAATTAGTAGTATTAATTA+GGG | - | chr1_2:49969521-49969540 | Msa0074920:CDS | 15.0% |
| !! | AAATTAGTAGTATTAATTAG+GGG | - | chr1_2:49969522-49969541 | Msa0074920:CDS | 15.0% |
| !! | ATATGGAAGAAAAATTAAAA+GGG | + | chr1_2:49970182-49970201 | None:intergenic | 15.0% |
| !! | TATATGGAAGAAAAATTAAA+AGG | + | chr1_2:49970183-49970202 | None:intergenic | 15.0% |
| !! | GTGAATACAAAATAAAAAAA+AGG | - | chr1_2:49970383-49970402 | Msa0074920:intron | 15.0% |
| !! | AATAAAAAAAAGGAAAATAG+AGG | - | chr1_2:49970393-49970412 | Msa0074920:intron | 15.0% |
| !!! | TTGAAAATTGAAGTAAATTT+TGG | + | chr1_2:49971302-49971321 | None:intergenic | 15.0% |
| !! | ATGTAAAATCATTTAAGTAA+TGG | + | chr1_2:49971574-49971593 | None:intergenic | 15.0% |
| !! | TATAAGTATATGAAAGTTAT+TGG | - | chr1_2:49971657-49971676 | Msa0074920:intron | 15.0% |
| !! | ATCATAATTCTAAATAGATT+CGG | - | chr1_2:49972090-49972109 | Msa0074920:intron | 15.0% |
| !!! | GTTGTTCTAAATTAAATTTA+AGG | - | chr1_2:49974397-49974416 | Msa0074920:five_prime_UTR | 15.0% |
| !! | TTACAATGTATTGTTAAATA+AGG | - | chr1_2:49974587-49974606 | Msa0074920:five_prime_UTR | 15.0% |
| !!! | TATACTTTGTTTTTATGATT+TGG | + | chr1_2:49974681-49974700 | None:intergenic | 15.0% |
| !! | ATAAAAACAAAGTATAATTG+TGG | - | chr1_2:49974685-49974704 | Msa0074920:five_prime_UTR | 15.0% |
| !! | AAGAAAAGAAAAAAAATGGA+AGG | + | chr1_2:49967686-49967705 | None:intergenic | 20.0% |
| !! | AATAATGAATACTATAGACA+AGG | - | chr1_2:49968269-49968288 | Msa0074920:CDS | 20.0% |
| !! | GACATTCTTAAATATATACT+TGG | - | chr1_2:49968369-49968388 | Msa0074920:intron | 20.0% |
| !! | AAAATATTACCCTATCTTAA+TGG | + | chr1_2:49969014-49969033 | None:intergenic | 20.0% |
| !!! | TGTATAATTTTAGTCAAAGT+GGG | - | chr1_2:49969100-49969119 | Msa0074920:intron | 20.0% |
| !!! | TTATATTTTAAATATTGGCG+TGG | - | chr1_2:49969163-49969182 | Msa0074920:intron | 20.0% |
| !! | AAATGTGAAAAAAGTAAAGA+GGG | + | chr1_2:49969394-49969413 | None:intergenic | 20.0% |
| !!! | TAATTTGAAAAGGTACATTT+AGG | - | chr1_2:49969578-49969597 | Msa0074920:intron | 20.0% |
| !!! | AATTTGAAAAGGTACATTTA+GGG | - | chr1_2:49969579-49969598 | Msa0074920:intron | 20.0% |
| !! | CAAAAATAAAATCAAATGGA+TGG | - | chr1_2:49969603-49969622 | Msa0074920:intron | 20.0% |
| !!! | ACAAAATAAAAGGATTTTCA+TGG | + | chr1_2:49969948-49969967 | None:intergenic | 20.0% |
| !! | TTAACTCTTCATACAATAAA+AGG | - | chr1_2:49970154-49970173 | Msa0074920:CDS | 20.0% |
| !! | TATGGAAGAAAAATTAAAAG+GGG | + | chr1_2:49970181-49970200 | None:intergenic | 20.0% |
| !! | ATGAACTTAATTTCAAAGAA+TGG | + | chr1_2:49970251-49970270 | None:intergenic | 20.0% |
| !!! | TTTGAAATTAAGTTCATGTT+TGG | - | chr1_2:49970254-49970273 | Msa0074920:intron | 20.0% |
| !! | TCAATATTTCTTAATGATGT+TGG | - | chr1_2:49970654-49970673 | Msa0074920:intron | 20.0% |
| !!! | AAAGTCTTTTAAGATCTATT+GGG | - | chr1_2:49970734-49970753 | Msa0074920:intron | 20.0% |
| !!! | CTTATATTAAACACATGTTT+TGG | + | chr1_2:49970877-49970896 | None:intergenic | 20.0% |
| !! | AAAACCTTAGAAATTATTCT+TGG | + | chr1_2:49971090-49971109 | None:intergenic | 20.0% |
| !! | CTAATTAATTTCTAATGACT+AGG | - | chr1_2:49971166-49971185 | Msa0074920:intron | 20.0% |
| !! | TCAATAATAATGTAGCTAAA+TGG | + | chr1_2:49971533-49971552 | None:intergenic | 20.0% |
| !! | TTAAGTTAAATTTAAGCACT+AGG | - | chr1_2:49971704-49971723 | Msa0074920:intron | 20.0% |
| !!! | ACAAGAACATTAGTTAATTT+TGG | - | chr1_2:49972471-49972490 | Msa0074920:intron | 20.0% |
| !!! | CAAGAACATTAGTTAATTTT+GGG | - | chr1_2:49972472-49972491 | Msa0074920:intron | 20.0% |
| !!! | ACTTGATAATTATATGAGAA+GGG | + | chr1_2:49972896-49972915 | None:intergenic | 20.0% |
| !! | AAAGTAATTGTAAGCATATA+TGG | - | chr1_2:49972988-49973007 | Msa0074920:intron | 20.0% |
| !! | TTAGTAAAAACTGAGAATAT+AGG | - | chr1_2:49973015-49973034 | Msa0074920:intron | 20.0% |
| !! | TAGTAAAAACTGAGAATATA+GGG | - | chr1_2:49973016-49973035 | Msa0074920:intron | 20.0% |
| !! | ACATACTTTACATTGAAAAT+CGG | - | chr1_2:49973054-49973073 | Msa0074920:intron | 20.0% |
| !!! | TATGATAATGCACAATTATT+AGG | + | chr1_2:49973103-49973122 | None:intergenic | 20.0% |
| !! | TGATTAGAAAGGAAAAAAAA+AGG | + | chr1_2:49973245-49973264 | None:intergenic | 20.0% |
| !!! | TTTTTTTCCTTTCTAATCAA+TGG | - | chr1_2:49973246-49973265 | Msa0074920:intron | 20.0% |
| !!! | TCTAAATTTTGTAACATTCT+AGG | + | chr1_2:49973395-49973414 | None:intergenic | 20.0% |
| !!! | TTAATTTGTGGAATATTAAG+AGG | + | chr1_2:49973549-49973568 | None:intergenic | 20.0% |
| !! | ATATAAACAAAACAGTTGTT+TGG | + | chr1_2:49973737-49973756 | None:intergenic | 20.0% |
| !! | TATATCATCTTATCACTATT+TGG | + | chr1_2:49973894-49973913 | None:intergenic | 20.0% |
| !!! | TATATTAATGTGTTTGTTGT+TGG | - | chr1_2:49974118-49974137 | Msa0074920:intron | 20.0% |
| !! | AAATTTGTAGAGACATTATT+TGG | - | chr1_2:49974483-49974502 | Msa0074920:five_prime_UTR | 20.0% |
| ! | CGTGAAGAAAAGAAAAAAAA+TGG | + | chr1_2:49967690-49967709 | None:intergenic | 25.0% |
| ! | AATGAATGAAATTGTTTGTG+TGG | - | chr1_2:49967980-49967999 | Msa0074920:intron | 25.0% |
| ! | AATAAAAACACAAGGAAAAG+AGG | + | chr1_2:49968111-49968130 | None:intergenic | 25.0% |
| ! | TATTACAATGAAGTTCCATT+TGG | - | chr1_2:49968130-49968149 | Msa0074920:intron | 25.0% |
| !!! | GAGGTATAACTAATTTTGAT+TGG | + | chr1_2:49968157-49968176 | None:intergenic | 25.0% |
| ! | ACAAATCTTATGTATAAGGA+CGG | - | chr1_2:49968306-49968325 | Msa0074920:intron | 25.0% |
| ! | TAAGAATGTCTTAAGAGTTA+AGG | + | chr1_2:49968359-49968378 | None:intergenic | 25.0% |
| !!! | CATTGTTTAACATTTGTTGT+TGG | - | chr1_2:49968404-49968423 | Msa0074920:intron | 25.0% |
| ! | ATTATTAATTGAAATCTCCG+TGG | - | chr1_2:49968480-49968499 | Msa0074920:intron | 25.0% |
| ! | TTATTAATTGAAATCTCCGT+GGG | - | chr1_2:49968481-49968500 | Msa0074920:intron | 25.0% |
| ! | AATTGTCCTTAAAAAATCCA+TGG | + | chr1_2:49968535-49968554 | None:intergenic | 25.0% |
| ! | TATATCTCTTGAACTTCATA+TGG | - | chr1_2:49968873-49968892 | Msa0074920:intron | 25.0% |
| !!! | CTGTATAATTTTAGTCAAAG+TGG | - | chr1_2:49969099-49969118 | Msa0074920:intron | 25.0% |
| ! | AATGTGAAAAAAGTAAAGAG+GGG | + | chr1_2:49969393-49969412 | None:intergenic | 25.0% |
| ! | GAAATGTGAAAAAAGTAAAG+AGG | + | chr1_2:49969395-49969414 | None:intergenic | 25.0% |
| !! | TATTAATTAGGGGTATGTTT+AGG | - | chr1_2:49969532-49969551 | Msa0074920:CDS | 25.0% |
| ! | ATGCATCTAGTAATTTGAAA+AGG | - | chr1_2:49969568-49969587 | Msa0074920:intron | 25.0% |
| ! | GGGACAAAAATAAAATCAAA+TGG | - | chr1_2:49969599-49969618 | Msa0074920:intron | 25.0% |
| !!! | TTGATTACTTTTACTTTTGC+AGG | - | chr1_2:49969845-49969864 | Msa0074920:intron | 25.0% |
| !!! | GATTGATGATGAAAGTAATT+GGG | + | chr1_2:49970053-49970072 | None:intergenic | 25.0% |
| !!! | TGATTGATGATGAAAGTAAT+TGG | + | chr1_2:49970054-49970073 | None:intergenic | 25.0% |
| ! | CATCATCAATCATCAATAAA+AGG | - | chr1_2:49970062-49970081 | Msa0074920:intron | 25.0% |
| ! | TCTGACCTAAAAATTAAAAG+GGG | + | chr1_2:49970089-49970108 | None:intergenic | 25.0% |
| ! | CTCTGACCTAAAAATTAAAA+GGG | + | chr1_2:49970090-49970109 | None:intergenic | 25.0% |
| !!! | CTTTTAATTTTTAGGTCAGA+GGG | - | chr1_2:49970089-49970108 | Msa0074920:CDS | 25.0% |
| ! | AAATTAAGTTCATGTTTGGA+TGG | - | chr1_2:49970258-49970277 | Msa0074920:intron | 25.0% |
| !!! | CAAAGTCTTTTAAGATCTAT+TGG | - | chr1_2:49970733-49970752 | Msa0074920:intron | 25.0% |
| ! | GATTCATAGAGATAAATGAT+GGG | + | chr1_2:49970792-49970811 | None:intergenic | 25.0% |
| ! | TGATTCATAGAGATAAATGA+TGG | + | chr1_2:49970793-49970812 | None:intergenic | 25.0% |
| ! | AAAAATTGTGTTAGAAATCG+TGG | + | chr1_2:49970953-49970972 | None:intergenic | 25.0% |
| ! | AAAGCCAAGAATAATTTCTA+AGG | - | chr1_2:49971083-49971102 | Msa0074920:intron | 25.0% |
| ! | ATTAATTAGCCACATTCATA+AGG | + | chr1_2:49971155-49971174 | None:intergenic | 25.0% |
| ! | AAATAGCAAGTTTATGATGT+TGG | + | chr1_2:49971418-49971437 | None:intergenic | 25.0% |
| ! | AATTAGATTTCTTAAGCATG+TGG | - | chr1_2:49971783-49971802 | Msa0074920:intron | 25.0% |
| ! | AAATTGTTATCTGCATTGAA+TGG | - | chr1_2:49971966-49971985 | Msa0074920:intron | 25.0% |
| ! | GTTGTAGCATAATGTAATAT+AGG | - | chr1_2:49972064-49972083 | Msa0074920:intron | 25.0% |
| ! | TCTAAGTAAATTCTCATTGT+TGG | - | chr1_2:49972161-49972180 | Msa0074920:intron | 25.0% |
| !! | AATTCAATTAGCTTGGTTTA+TGG | + | chr1_2:49972274-49972293 | None:intergenic | 25.0% |
| !! | CAACTAAGATGGATATATTT+TGG | + | chr1_2:49972317-49972336 | None:intergenic | 25.0% |
| !!! | CACTAGTTTCAATTCTTTTA+AGG | - | chr1_2:49972564-49972583 | Msa0074920:intron | 25.0% |
| ! | TAAATTTGTGATTGCAACTT+TGG | - | chr1_2:49972598-49972617 | Msa0074920:intron | 25.0% |
| ! | AAATTTGTGATTGCAACTTT+GGG | - | chr1_2:49972599-49972618 | Msa0074920:intron | 25.0% |
| ! | GAAATCTTTAACAATGAGAA+AGG | - | chr1_2:49972809-49972828 | Msa0074920:intron | 25.0% |
| !! | TTGATAATTATATGAGAAGG+GGG | + | chr1_2:49972894-49972913 | None:intergenic | 25.0% |
| !! | CTTGATAATTATATGAGAAG+GGG | + | chr1_2:49972895-49972914 | None:intergenic | 25.0% |
| !! | CACTTGATAATTATATGAGA+AGG | + | chr1_2:49972897-49972916 | None:intergenic | 25.0% |
| ! | AAGGAAAAAAAAAGGTTGTA+TGG | + | chr1_2:49973237-49973256 | None:intergenic | 25.0% |
| ! | GATAGCTGCAAATAAAATAA+AGG | + | chr1_2:49973795-49973814 | None:intergenic | 25.0% |
| ! | GAAGCAATTTAACTGAAATT+AGG | - | chr1_2:49974044-49974063 | Msa0074920:CDS | 25.0% |
| ! | TCTAATTAATAAAGTATGCC+AGG | + | chr1_2:49974224-49974243 | None:intergenic | 25.0% |
| !! | CTTTTGTAAACTAAAATACG+AGG | + | chr1_2:49974307-49974326 | None:intergenic | 25.0% |
| TGAAAGTTGAAGAAGGTTAA+TGG | + | chr1_2:49967491-49967510 | None:intergenic | 30.0% | |
| GTGTTGGAAGACATTAATTA+AGG | + | chr1_2:49967863-49967882 | None:intergenic | 30.0% | |
| !!! | CTGTTTTTGTTTTCTCATTC+TGG | - | chr1_2:49967939-49967958 | Msa0074920:CDS | 30.0% |
| !!! | CTAATTTTGATTGGTCCAAA+TGG | + | chr1_2:49968148-49968167 | None:intergenic | 30.0% |
| !!! | TGAGTTCATTGATTTTTGTG+AGG | + | chr1_2:49968176-49968195 | None:intergenic | 30.0% |
| ! | GAATCAATATGTGTGCTTTT+TGG | - | chr1_2:49968443-49968462 | Msa0074920:intron | 30.0% |
| ! | GTTATCTAGAGTTTGATTGA+AGG | - | chr1_2:49968648-49968667 | Msa0074920:CDS | 30.0% |
| TTAGAAAGTTCACAACAATG+TGG | - | chr1_2:49968941-49968960 | Msa0074920:intron | 30.0% | |
| TCCTAAAGAACTATTAGCAA+TGG | - | chr1_2:49968967-49968986 | Msa0074920:intron | 30.0% | |
| ACCATTGCTAATAGTTCTTT+AGG | + | chr1_2:49968971-49968990 | None:intergenic | 30.0% | |
| ! | TTTTGCTCTACCATTAAGAT+AGG | - | chr1_2:49969001-49969020 | Msa0074920:intron | 30.0% |
| TTTGCTCTACCATTAAGATA+GGG | - | chr1_2:49969002-49969021 | Msa0074920:intron | 30.0% | |
| !! | TTGATAGTGAGTACTGATTA+TGG | - | chr1_2:49969135-49969154 | Msa0074920:intron | 30.0% |
| !! | TGATAGTGAGTACTGATTAT+GGG | - | chr1_2:49969136-49969155 | Msa0074920:intron | 30.0% |
| TCAAATGGATGGTTACATTA+AGG | - | chr1_2:49969614-49969633 | Msa0074920:intron | 30.0% | |
| CAAATGGATGGTTACATTAA+GGG | - | chr1_2:49969615-49969634 | Msa0074920:intron | 30.0% | |
| !!! | AGAGGAGATTTTAAAATGAG+AGG | - | chr1_2:49969744-49969763 | Msa0074920:CDS | 30.0% |
| !!! | GAGGAGATTTTAAAATGAGA+GGG | - | chr1_2:49969745-49969764 | Msa0074920:CDS | 30.0% |
| ! | TAAAAGGATTTTCATGGAAC+AGG | + | chr1_2:49969942-49969961 | None:intergenic | 30.0% |
| ATTCTCAACGATAGACAAAA+TGG | + | chr1_2:49969987-49970006 | None:intergenic | 30.0% | |
| TATCGTTGAGAATTGAGATA+CGG | - | chr1_2:49969994-49970013 | Msa0074920:intron | 30.0% | |
| !!! | AAGGTCCCCTTTTAATTTTT+AGG | - | chr1_2:49970081-49970100 | Msa0074920:CDS | 30.0% |
| CCTCTGACCTAAAAATTAAA+AGG | + | chr1_2:49970091-49970110 | None:intergenic | 30.0% | |
| !!! | CCTTTTAATTTTTAGGTCAG+AGG | - | chr1_2:49970088-49970107 | Msa0074920:CDS | 30.0% |
| ! | TAAATTTCTGCCATTTATGC+TGG | + | chr1_2:49970221-49970240 | None:intergenic | 30.0% |
| ! | GGAGTTTTTCCTCAAATTAA+TGG | - | chr1_2:49970279-49970298 | Msa0074920:intron | 30.0% |
| ! | CTTTCTTCTCCATTAATTTG+AGG | + | chr1_2:49970291-49970310 | None:intergenic | 30.0% |
| AACACGATGAAATGTGAAAA+TGG | - | chr1_2:49970318-49970337 | Msa0074920:intron | 30.0% | |
| ATATATGTGTATCAAGTGAG+AGG | + | chr1_2:49970521-49970540 | None:intergenic | 30.0% | |
| !! | ACCTCACATATCAGTTTTAT+AGG | - | chr1_2:49970911-49970930 | Msa0074920:intron | 30.0% |
| TCCTATAAAACTGATATGTG+AGG | + | chr1_2:49970915-49970934 | None:intergenic | 30.0% | |
| TGAATGTGTGTTTGCAATAT+AGG | - | chr1_2:49971005-49971024 | Msa0074920:intron | 30.0% | |
| ACTCAAAAACCTTATGAATG+TGG | - | chr1_2:49971143-49971162 | Msa0074920:intron | 30.0% | |
| CAAGTGAAAAATTAGGAGAA+AGG | + | chr1_2:49971615-49971634 | None:intergenic | 30.0% | |
| ! | TTCTCCTAATTTTTCACTTG+TGG | - | chr1_2:49971615-49971634 | Msa0074920:intron | 30.0% |
| ! | TCTCCTAATTTTTCACTTGT+GGG | - | chr1_2:49971616-49971635 | Msa0074920:intron | 30.0% |
| !! | AAGCACTAGGAGTATTAAAA+AGG | - | chr1_2:49971717-49971736 | Msa0074920:intron | 30.0% |
| CTCACTAGACATTATGTTAT+TGG | + | chr1_2:49971748-49971767 | None:intergenic | 30.0% | |
| TGCTAATTTATTCTACAACG+TGG | - | chr1_2:49971867-49971886 | Msa0074920:intron | 30.0% | |
| ! | CTATTAGTACTTTTCTCAAG+TGG | - | chr1_2:49972136-49972155 | Msa0074920:intron | 30.0% |
| AAGTAAATTCTCATTGTTGG+AGG | - | chr1_2:49972164-49972183 | Msa0074920:intron | 30.0% | |
| AGGTATTCCTTCACAATATT+TGG | + | chr1_2:49972210-49972229 | None:intergenic | 30.0% | |
| TAATTGAATTTCGCTCTTAC+AGG | - | chr1_2:49972284-49972303 | Msa0074920:intron | 30.0% | |
| GCAATCACAAATTTAAGTCT+TGG | + | chr1_2:49972593-49972612 | None:intergenic | 30.0% | |
| TATATGAATGCATCATGACA+AGG | + | chr1_2:49972697-49972716 | None:intergenic | 30.0% | |
| GATGCATTCATATACAAGAA+TGG | - | chr1_2:49972703-49972722 | Msa0074920:intron | 30.0% | |
| ! | TTCAATTTACTTTCTAGCAG+AGG | - | chr1_2:49972749-49972768 | Msa0074920:intron | 30.0% |
| ! | TCAATTTACTTTCTAGCAGA+GGG | - | chr1_2:49972750-49972769 | Msa0074920:intron | 30.0% |
| TGATAATTATATGAGAAGGG+GGG | + | chr1_2:49972893-49972912 | None:intergenic | 30.0% | |
| !!! | TAGCTATTTCTTCCCTATTT+TGG | - | chr1_2:49973175-49973194 | Msa0074920:intron | 30.0% |
| CAATGTAGGTTACCAAAATA+GGG | + | chr1_2:49973190-49973209 | None:intergenic | 30.0% | |
| ! | TATAGCACCATTGATTAGAA+AGG | + | chr1_2:49973256-49973275 | None:intergenic | 30.0% |
| ! | GTTACAAAATTTAGAGCAGA+CGG | - | chr1_2:49973400-49973419 | Msa0074920:intron | 30.0% |
| ! | TTACAAAATTTAGAGCAGAC+GGG | - | chr1_2:49973401-49973420 | Msa0074920:intron | 30.0% |
| ! | TATGTGGGAGGTTATATTTT+GGG | - | chr1_2:49973434-49973453 | Msa0074920:intron | 30.0% |
| ATCTGAAAAAATTCCACCAT+CGG | - | chr1_2:49973459-49973478 | Msa0074920:intron | 30.0% | |
| !! | TTTGTTGGAGCAGTTTTATA+TGG | - | chr1_2:49973514-49973533 | Msa0074920:intron | 30.0% |
| ! | TATCGTAATTTGAGATCAAG+CGG | + | chr1_2:49973598-49973617 | None:intergenic | 30.0% |
| ! | AACGATCGATTTCAAATTGA+TGG | - | chr1_2:49973659-49973678 | Msa0074920:intron | 30.0% |
| AACAGTTTGTAAAGTGATCT+AGG | + | chr1_2:49973685-49973704 | None:intergenic | 30.0% | |
| CTGAAATTAGGAGAAAATCA+AGG | - | chr1_2:49974056-49974075 | Msa0074920:CDS | 30.0% | |
| TAGCAGTTAATAACAAACAC+AGG | + | chr1_2:49974098-49974117 | None:intergenic | 30.0% | |
| TTAATAAAGTATGCCAGGTT+TGG | + | chr1_2:49974219-49974238 | None:intergenic | 30.0% | |
| TAATTAGAGCCTCAAATATC+CGG | - | chr1_2:49974236-49974255 | Msa0074920:exon | 30.0% | |
| ! | AAATGCTATAAAGTGTCACT+TGG | - | chr1_2:49974517-49974536 | Msa0074920:five_prime_UTR | 30.0% |
| ! | CTTACATCCTTAAACTTGTT+TGG | - | chr1_2:49974610-49974629 | Msa0074920:five_prime_UTR | 30.0% |
| AAGCTTACCAAACAAGTTTA+AGG | + | chr1_2:49974620-49974639 | None:intergenic | 30.0% | |
| TGGCAAATCCTGAAAAATTA+TGG | - | chr1_2:49974653-49974672 | Msa0074920:five_prime_UTR | 30.0% | |
| GGCAAATCCTGAAAAATTAT+GGG | - | chr1_2:49974654-49974673 | Msa0074920:five_prime_UTR | 30.0% | |
| ! | ATTTGGACCCATAATTTTTC+AGG | + | chr1_2:49974664-49974683 | None:intergenic | 30.0% |
| TGCATTCGATTCAGACAAAA+CGG | - | chr1_2:49967436-49967455 | Msa0074920:three_prime_UTR | 35.0% | |
| ! | TGACTTGTGAAAGTTGAAGA+AGG | + | chr1_2:49967498-49967517 | None:intergenic | 35.0% |
| AATTTCTGCCATGGTGAAAT+TGG | + | chr1_2:49967604-49967623 | None:intergenic | 35.0% | |
| !! | AAGCTTGTTAATTTCTGCCA+TGG | + | chr1_2:49967613-49967632 | None:intergenic | 35.0% |
| TAGCATAATAACCAACCTAG+GGG | + | chr1_2:49967733-49967752 | None:intergenic | 35.0% | |
| GTAGCATAATAACCAACCTA+GGG | + | chr1_2:49967734-49967753 | None:intergenic | 35.0% | |
| AGTAGCATAATAACCAACCT+AGG | + | chr1_2:49967735-49967754 | None:intergenic | 35.0% | |
| ! | TCACAATGACAGGATTTTCA+GGG | + | chr1_2:49967898-49967917 | None:intergenic | 35.0% |
| AATGAAATTGTTTGTGTGGC+AGG | - | chr1_2:49967984-49968003 | Msa0074920:intron | 35.0% | |
| ! | GAATTGAGTGGTTCTATTCT+TGG | + | chr1_2:49968073-49968092 | None:intergenic | 35.0% |
| GAATAGAACCACTCAATTCA+AGG | - | chr1_2:49968074-49968093 | Msa0074920:intron | 35.0% | |
| AATGTCTTAAGAGTTAAGGC+TGG | + | chr1_2:49968355-49968374 | None:intergenic | 35.0% | |
| ! | TTTTTATTGCGTTAACCCTC+CGG | - | chr1_2:49968604-49968623 | Msa0074920:intron | 35.0% |
| CAATCAAACTCTAGATAACC+AGG | + | chr1_2:49968647-49968666 | None:intergenic | 35.0% | |
| ! | TGAGAGAGTGTAGTTAAAGT+GGG | + | chr1_2:49968830-49968849 | None:intergenic | 35.0% |
| CTCACTATCAAACAAAAGCT+AGG | + | chr1_2:49969126-49969145 | None:intergenic | 35.0% | |
| GTAAAGAGGGGTTACATTAA+GGG | + | chr1_2:49969381-49969400 | None:intergenic | 35.0% | |
| AGTAAAGAGGGGTTACATTA+AGG | + | chr1_2:49969382-49969401 | None:intergenic | 35.0% | |
| CATACAAACAAAGGACAGTT+TGG | + | chr1_2:49969470-49969489 | None:intergenic | 35.0% | |
| !! | TTTTAGGTCAGAGGGAAAAT+TGG | - | chr1_2:49970097-49970116 | Msa0074920:CDS | 35.0% |
| ATCCTGAAGAAGAAGATCAA+TGG | - | chr1_2:49970358-49970377 | Msa0074920:intron | 35.0% | |
| TCCTGAAGAAGAAGATCAAT+GGG | - | chr1_2:49970359-49970378 | Msa0074920:intron | 35.0% | |
| AAAGGAAAATAGAGGCAATC+AGG | - | chr1_2:49970401-49970420 | Msa0074920:intron | 35.0% | |
| AGAGGAGATGTTATAATGAG+AGG | + | chr1_2:49970503-49970522 | None:intergenic | 35.0% | |
| TCGTTAAAAGAGTCTCACAT+CGG | - | chr1_2:49970688-49970707 | Msa0074920:intron | 35.0% | |
| ATTGTGTTAGAAATCGTGGT+TGG | + | chr1_2:49970949-49970968 | None:intergenic | 35.0% | |
| TGTGGATACTTCTTCATTTG+TGG | - | chr1_2:49971241-49971260 | Msa0074920:intron | 35.0% | |
| ! | TTCCTTTTCCATTTGTTTCC+AGG | - | chr1_2:49971487-49971506 | Msa0074920:intron | 35.0% |
| ! | CTCCTAATTTTTCACTTGTG+GGG | - | chr1_2:49971617-49971636 | Msa0074920:intron | 35.0% |
| CGAACATGTATATTCACAGA+AGG | - | chr1_2:49971906-49971925 | Msa0074920:intron | 35.0% | |
| AGGCATCCTAACATCAAAAT+AGG | + | chr1_2:49972003-49972022 | None:intergenic | 35.0% | |
| CCTTCACAATATTTGGTACA+TGG | + | chr1_2:49972203-49972222 | None:intergenic | 35.0% | |
| CCATGTACCAAATATTGTGA+AGG | - | chr1_2:49972200-49972219 | Msa0074920:intron | 35.0% | |
| GCAATTAGATGAACAGACAT+AGG | + | chr1_2:49972230-49972249 | None:intergenic | 35.0% | |
| AGAGCGAAATTCAATTAGCT+TGG | + | chr1_2:49972281-49972300 | None:intergenic | 35.0% | |
| ! | TGATTTGAGTAACTTGCCTT+AGG | + | chr1_2:49972414-49972433 | None:intergenic | 35.0% |
| AGAATTGAAACTAGTGCTCT+TGG | + | chr1_2:49972560-49972579 | None:intergenic | 35.0% | |
| ! | ATTGCAACTTTGGGAAAAGA+CGG | - | chr1_2:49972608-49972627 | Msa0074920:intron | 35.0% |
| ATGACAAGGATCAAACAAAG+GGG | + | chr1_2:49972683-49972702 | None:intergenic | 35.0% | |
| CATGACAAGGATCAAACAAA+GGG | + | chr1_2:49972684-49972703 | None:intergenic | 35.0% | |
| TCATGACAAGGATCAAACAA+AGG | + | chr1_2:49972685-49972704 | None:intergenic | 35.0% | |
| ! | GTTTTATGTAGCTATTACCG+AGG | + | chr1_2:49972865-49972884 | None:intergenic | 35.0% |
| GCAATGTAGGTTACCAAAAT+AGG | + | chr1_2:49973191-49973210 | None:intergenic | 35.0% | |
| !! | GGTTGTATGGTGTTATTGAT+GGG | + | chr1_2:49973224-49973243 | None:intergenic | 35.0% |
| !! | AGGTTGTATGGTGTTATTGA+TGG | + | chr1_2:49973225-49973244 | None:intergenic | 35.0% |
| ! | GTATGTGGGAGGTTATATTT+TGG | - | chr1_2:49973433-49973452 | Msa0074920:intron | 35.0% |
| TTCCACAAATTAAATGCGAG+AGG | - | chr1_2:49973556-49973575 | Msa0074920:intron | 35.0% | |
| !! | TTTTGATGACCGGATATTTG+AGG | + | chr1_2:49974248-49974267 | None:intergenic | 35.0% |
| TCAAAATCCTCAGCATAACA+AGG | - | chr1_2:49974262-49974281 | Msa0074920:five_prime_UTR | 35.0% | |
| TGCTTGTACTTCTAAGTTTC+TGG | - | chr1_2:49974349-49974368 | Msa0074920:intron | 35.0% | |
| !! | TAAAGTGTCACTTGGTAGAT+TGG | - | chr1_2:49974525-49974544 | Msa0074920:five_prime_UTR | 35.0% |
| TGTCTTCCTAAAGAAGTTGT+TGG | - | chr1_2:49974557-49974576 | Msa0074920:five_prime_UTR | 35.0% | |
| CATAGACCAACAACTTCTTT+AGG | + | chr1_2:49974566-49974585 | None:intergenic | 35.0% | |
| ACTTGTTTGGTAAGCTTACT+TGG | - | chr1_2:49974623-49974642 | Msa0074920:five_prime_UTR | 35.0% | |
| ! | TGGTAAGCTTACTTGGTAAT+CGG | - | chr1_2:49974630-49974649 | Msa0074920:five_prime_UTR | 35.0% |
| ACTCTTGACCAATTTCACCA+TGG | - | chr1_2:49967593-49967612 | Msa0074920:three_prime_UTR | 40.0% | |
| AGCATAATAACCAACCTAGG+GGG | + | chr1_2:49967732-49967751 | None:intergenic | 40.0% | |
| AACTTCTCTTTCAGTTTCCC+TGG | - | chr1_2:49967808-49967827 | Msa0074920:three_prime_UTR | 40.0% | |
| ! | CTCACAATGACAGGATTTTC+AGG | + | chr1_2:49967899-49967918 | None:intergenic | 40.0% |
| AAGAAGACACTCACAATGAC+AGG | + | chr1_2:49967908-49967927 | None:intergenic | 40.0% | |
| AAATTGTTTGTGTGGCAGGT+TGG | - | chr1_2:49967988-49968007 | Msa0074920:intron | 40.0% | |
| AATTGTTTGTGTGGCAGGTT+GGG | - | chr1_2:49967989-49968008 | Msa0074920:intron | 40.0% | |
| !!! | CTATTCTTGGTGTCTGGTTT+TGG | + | chr1_2:49968060-49968079 | None:intergenic | 40.0% |
| AGGATGAACCTTGAATTGAG+TGG | + | chr1_2:49968085-49968104 | None:intergenic | 40.0% | |
| AACACAAGGAAAAGAGGAAG+AGG | + | chr1_2:49968105-49968124 | None:intergenic | 40.0% | |
| TGTTGGTGTACTCATCTCTT+TGG | - | chr1_2:49968421-49968440 | Msa0074920:intron | 40.0% | |
| ATTGGATGTGCAACTTCTGT+GGG | - | chr1_2:49968508-49968527 | Msa0074920:intron | 40.0% | |
| !!! | GTGGGTCCATGGATTTTTTA+AGG | - | chr1_2:49968526-49968545 | Msa0074920:intron | 40.0% |
| GGATTTCTTTCTTCGAGAAC+CGG | + | chr1_2:49968626-49968645 | None:intergenic | 40.0% | |
| GTTCTCGAAGAAAGAAATCC+TGG | - | chr1_2:49968626-49968645 | Msa0074920:CDS | 40.0% | |
| ! | GTGAGAGAGTGTAGTTAAAG+TGG | + | chr1_2:49968831-49968850 | None:intergenic | 40.0% |
| GATGACGTGGGAAAGAAAAT+GGG | + | chr1_2:49969212-49969231 | None:intergenic | 40.0% | |
| AGATGACGTGGGAAAGAAAA+TGG | + | chr1_2:49969213-49969232 | None:intergenic | 40.0% | |
| ! | TTTTCTTTCCCACGTCATCT+CGG | - | chr1_2:49969213-49969232 | Msa0074920:intron | 40.0% |
| TGGATGGTTACATTAAGGGA+CGG | - | chr1_2:49969619-49969638 | Msa0074920:intron | 40.0% | |
| !! | GAGGGTGAGAGCATTAAATT+AGG | - | chr1_2:49969763-49969782 | Msa0074920:CDS | 40.0% |
| GAGCATTAAATTAGGACCCT+TGG | - | chr1_2:49969771-49969790 | Msa0074920:CDS | 40.0% | |
| GAAAACCACGTAACAGAGAA+AGG | + | chr1_2:49969881-49969900 | None:intergenic | 40.0% | |
| ! | AGGATTTTCATGGAACAGGA+GGG | + | chr1_2:49969938-49969957 | None:intergenic | 40.0% |
| ! | AAGGATTTTCATGGAACAGG+AGG | + | chr1_2:49969939-49969958 | None:intergenic | 40.0% |
| TACAGACTGCTATGCAAAGA+AGG | - | chr1_2:49970124-49970143 | Msa0074920:CDS | 40.0% | |
| GAAACGTAGAGACAGGTATA+TGG | + | chr1_2:49970199-49970218 | None:intergenic | 40.0% | |
| CTCTACGTTTCCAGCATAAA+TGG | - | chr1_2:49970208-49970227 | Msa0074920:intron | 40.0% | |
| !! | AGAGGTGAGAGCATTAGATT+AGG | + | chr1_2:49970485-49970504 | None:intergenic | 40.0% |
| GATAAAGGAAACCTGATAGC+AGG | + | chr1_2:49970763-49970782 | None:intergenic | 40.0% | |
| !! | AATGATGGGTGACACGATAA+AGG | + | chr1_2:49970778-49970797 | None:intergenic | 40.0% |
| GTGTTTGCAATATAGGTGCA+AGG | - | chr1_2:49971012-49971031 | Msa0074920:intron | 40.0% | |
| TTTGCAATATAGGTGCAAGG+TGG | - | chr1_2:49971015-49971034 | Msa0074920:intron | 40.0% | |
| TTGCAATATAGGTGCAAGGT+GGG | - | chr1_2:49971016-49971035 | Msa0074920:intron | 40.0% | |
| GACCTGGAAACAAATGGAAA+AGG | + | chr1_2:49971492-49971511 | None:intergenic | 40.0% | |
| !! | CTTTGAGACCTGGAAACAAA+TGG | + | chr1_2:49971498-49971517 | None:intergenic | 40.0% |
| CATTTGTTTCCAGGTCTCAA+AGG | - | chr1_2:49971496-49971515 | Msa0074920:intron | 40.0% | |
| AGTAATGGTGTACATACGTG+TGG | + | chr1_2:49971559-49971578 | None:intergenic | 40.0% | |
| AGCCCCACAAGTGAAAAATT+AGG | + | chr1_2:49971622-49971641 | None:intergenic | 40.0% | |
| TTCTACAACGTGGAACATTC+AGG | - | chr1_2:49971877-49971896 | Msa0074920:intron | 40.0% | |
| !!! | GAGTGGCCTATTTTGATGTT+AGG | - | chr1_2:49971994-49972013 | Msa0074920:intron | 40.0% |
| TGCTCTTGTCATTGCTAAAG+AGG | - | chr1_2:49972028-49972047 | Msa0074920:intron | 40.0% | |
| CCTTTCAGCATCAACTAAGA+TGG | + | chr1_2:49972328-49972347 | None:intergenic | 40.0% | |
| ! | CCATCTTAGTTGATGCTGAA+AGG | - | chr1_2:49972325-49972344 | Msa0074920:intron | 40.0% |
| ATTGAATGACCTTCTGGACT+TGG | - | chr1_2:49972359-49972378 | Msa0074920:intron | 40.0% | |
| TCCATGTCTGTGAAATGTGT+CGG | + | chr1_2:49972520-49972539 | None:intergenic | 40.0% | |
| ATGCTTCAGAAATGTGCAGA+TGG | - | chr1_2:49972638-49972657 | Msa0074920:intron | 40.0% | |
| ACACTTAGAAGAAGTGGATG+TGG | - | chr1_2:49972776-49972795 | Msa0074920:intron | 40.0% | |
| GTTATTGATGGGAGTCTTTG+TGG | + | chr1_2:49973213-49973232 | None:intergenic | 40.0% | |
| ! | AAATTTAGAGCAGACGGGAT+AGG | - | chr1_2:49973406-49973425 | Msa0074920:intron | 40.0% |
| GTTGTATCAATAAGCTCCGA+TGG | + | chr1_2:49973478-49973497 | None:intergenic | 40.0% | |
| TCGGAGCTTATTGATACAAC+TGG | - | chr1_2:49973478-49973497 | Msa0074920:intron | 40.0% | |
| CTTATTGATACAACTGGTGC+TGG | - | chr1_2:49973484-49973503 | Msa0074920:intron | 40.0% | |
| !! | TGCCTCTCGCATTTAATTTG+TGG | + | chr1_2:49973561-49973580 | None:intergenic | 40.0% |
| !! | CGAGAGGCATTTATTGATCT+TGG | - | chr1_2:49973572-49973591 | Msa0074920:intron | 40.0% |
| ! | CATTTTCTCTGGTGAGAAGT+TGG | + | chr1_2:49973822-49973841 | None:intergenic | 40.0% |
| CTTACCACATGAGAAGCAAA+GGG | + | chr1_2:49973848-49973867 | None:intergenic | 40.0% | |
| !! | TGTTTGTTGTTGGCATGTGA+TGG | - | chr1_2:49974128-49974147 | Msa0074920:intron | 40.0% |
| TTGGCATGTGATGGTATTAC+AGG | - | chr1_2:49974137-49974156 | Msa0074920:intron | 40.0% | |
| !! | ATGCTGAGGATTTTGATGAC+CGG | + | chr1_2:49974258-49974277 | None:intergenic | 40.0% |
| ! | TAAGCTTACTTGGTAATCGG+TGG | - | chr1_2:49974633-49974652 | Msa0074920:five_prime_UTR | 40.0% |
| CGAATGCAGTTCGTGTTCAT+CGG | + | chr1_2:49967424-49967443 | None:intergenic | 45.0% | |
| TTAATGGCCCTTCCTATACG+CGG | + | chr1_2:49967475-49967494 | None:intergenic | 45.0% | |
| CATAATAACCAACCTAGGGG+GGG | + | chr1_2:49967730-49967749 | None:intergenic | 45.0% | |
| GCATAATAACCAACCTAGGG+GGG | + | chr1_2:49967731-49967750 | None:intergenic | 45.0% | |
| !!! | TTTTGTTTCTGCTCCTGCCA+GGG | + | chr1_2:49967828-49967847 | None:intergenic | 45.0% |
| !! | ATGACAGGATTTTCAGGGAG+AGG | + | chr1_2:49967893-49967912 | None:intergenic | 45.0% |
| !! | GTGGTTCTATTCTTGGTGTC+TGG | + | chr1_2:49968066-49968085 | None:intergenic | 45.0% |
| CATTGGATGTGCAACTTCTG+TGG | - | chr1_2:49968507-49968526 | Msa0074920:intron | 45.0% | |
| TTCTTTCTTCGAGAACCGGA+GGG | + | chr1_2:49968622-49968641 | None:intergenic | 45.0% | |
| TTTCTTTCTTCGAGAACCGG+AGG | + | chr1_2:49968623-49968642 | None:intergenic | 45.0% | |
| TAACTACACTCTCTCACGCT+TGG | - | chr1_2:49968834-49968853 | Msa0074920:intron | 45.0% | |
| AAAGTAGACCGAGATGACGT+GGG | + | chr1_2:49969224-49969243 | None:intergenic | 45.0% | |
| AGAGGGGTTACATTAAGGGA+CGG | + | chr1_2:49969377-49969396 | None:intergenic | 45.0% | |
| ATGGTTACATTAAGGGACGG+AGG | - | chr1_2:49969622-49969641 | Msa0074920:intron | 45.0% | |
| TGGTTACATTAAGGGACGGA+GGG | - | chr1_2:49969623-49969642 | Msa0074920:intron | 45.0% | |
| ! | TAGAGGGTGTATCAAGTGAG+AGG | - | chr1_2:49969726-49969745 | Msa0074920:CDS | 45.0% |
| GACCCTTGGATCAATCTGAA+CGG | - | chr1_2:49969785-49969804 | Msa0074920:CDS | 45.0% | |
| CACCGTTCAGATTGATCCAA+GGG | + | chr1_2:49970458-49970477 | None:intergenic | 45.0% | |
| ACACCGTTCAGATTGATCCA+AGG | + | chr1_2:49970457-49970476 | None:intergenic | 45.0% | |
| GGAAAGAGTGGAGATGGAAA+GGG | + | chr1_2:49969910-49969929 | None:intergenic | 45.0% | |
| AGGAAAGAGTGGAGATGGAA+AGG | + | chr1_2:49969911-49969930 | None:intergenic | 45.0% | |
| GGAATAGGAAAGAGTGGAGA+TGG | + | chr1_2:49969916-49969935 | None:intergenic | 45.0% | |
| ! | GGATTTTCATGGAACAGGAG+GGG | + | chr1_2:49969937-49969956 | None:intergenic | 45.0% |
| TATGCTGGAAACGTAGAGAC+AGG | + | chr1_2:49970206-49970225 | None:intergenic | 45.0% | |
| GCCCATTGATCTTCTTCTTC+AGG | + | chr1_2:49970363-49970382 | None:intergenic | 45.0% | |
| GGAAAATAGAGGCAATCAGG+TGG | - | chr1_2:49970404-49970423 | Msa0074920:intron | 45.0% | |
| ACACCGTTCAGATTGATCCA+AGG | - | chr1_2:49970457-49970476 | Msa0074920:intron | 45.0% | |
| CACCGTTCAGATTGATCCAA+GGG | - | chr1_2:49970458-49970477 | Msa0074920:intron | 45.0% | |
| GACCCTTGGATCAATCTGAA+CGG | + | chr1_2:49969785-49969804 | None:intergenic | 45.0% | |
| GAGCATTAGATTAGGACCCT+TGG | + | chr1_2:49970477-49970496 | None:intergenic | 45.0% | |
| TGCAATATAGGTGCAAGGTG+GGG | - | chr1_2:49971017-49971036 | Msa0074920:intron | 45.0% | |
| AGCACAAGTCAACGCATTTC+CGG | + | chr1_2:49971049-49971068 | None:intergenic | 45.0% | |
| !! | TTGACTTGTGCTGCTCGTTT+GGG | - | chr1_2:49971057-49971076 | Msa0074920:intron | 45.0% |
| TAGGTTGCAAATGACGCTCA+GGG | - | chr1_2:49971185-49971204 | Msa0074920:intron | 45.0% | |
| !! | TCAGGGTAGGGTTTTGATAG+AGG | - | chr1_2:49971202-49971221 | Msa0074920:intron | 45.0% |
| ATAGAGGAGCTAGAAGCTGA+GGG | - | chr1_2:49971218-49971237 | Msa0074920:intron | 45.0% | |
| TGTTTCCAGGTCTCAAAGGA+AGG | - | chr1_2:49971500-49971519 | Msa0074920:intron | 45.0% | |
| GTTTCCAGGTCTCAAAGGAA+GGG | - | chr1_2:49971501-49971520 | Msa0074920:intron | 45.0% | |
| CACAGAAGGATCTCCTACAA+TGG | - | chr1_2:49971920-49971939 | Msa0074920:intron | 45.0% | |
| AGGATCTCCTACAATGGTAC+CGG | - | chr1_2:49971926-49971945 | Msa0074920:intron | 45.0% | |
| AGATCTTCCGGTACCATTGT+AGG | + | chr1_2:49971936-49971955 | None:intergenic | 45.0% | |
| TTTGCACGCGAAAGATCTTC+CGG | + | chr1_2:49971948-49971967 | None:intergenic | 45.0% | |
| TGCATTGAATGGAGCTAGAG+TGG | - | chr1_2:49971977-49971996 | Msa0074920:intron | 45.0% | |
| ! | TAGTTGATGCTGAAAGGCCA+AGG | - | chr1_2:49972331-49972350 | Msa0074920:intron | 45.0% |
| ! | AGTTGATGCTGAAAGGCCAA+GGG | - | chr1_2:49972332-49972351 | Msa0074920:intron | 45.0% |
| AGGTCATTCAATCCTTCCCT+TGG | + | chr1_2:49972351-49972370 | None:intergenic | 45.0% | |
| GGAAGGATTGAATGACCTTC+TGG | - | chr1_2:49972353-49972372 | Msa0074920:intron | 45.0% | |
| CATAATCAGCCAAGTCCAGA+AGG | + | chr1_2:49972371-49972390 | None:intergenic | 45.0% | |
| TCCGACACATTTCACAGACA+TGG | - | chr1_2:49972516-49972535 | Msa0074920:intron | 45.0% | |
| CATTTCACAGACATGGACAG+AGG | - | chr1_2:49972523-49972542 | Msa0074920:intron | 45.0% | |
| CAAACAAAGGGGTGGAAAAG+AGG | + | chr1_2:49972672-49972691 | None:intergenic | 45.0% | |
| ACAAGGATCAAACAAAGGGG+TGG | + | chr1_2:49972680-49972699 | None:intergenic | 45.0% | |
| GGGTTCACACTTAGAAGAAG+TGG | - | chr1_2:49972770-49972789 | Msa0074920:intron | 45.0% | |
| ACGGGATAGGATCAGTATGT+GGG | - | chr1_2:49973419-49973438 | Msa0074920:intron | 45.0% | |
| GTATCAATAAGCTCCGATGG+TGG | + | chr1_2:49973475-49973494 | None:intergenic | 45.0% | |
| ! | GCAAAGGGCAACATTTTCTC+TGG | + | chr1_2:49973833-49973852 | None:intergenic | 45.0% |
| GCTTACCACATGAGAAGCAA+AGG | + | chr1_2:49973849-49973868 | None:intergenic | 45.0% | |
| AATGTAGAGCTCTTGGAGCT+AGG | - | chr1_2:49974169-49974188 | Msa0074920:intron | 45.0% | |
| AGGTTTGGATCAGTGCGATA+TGG | + | chr1_2:49974204-49974223 | None:intergenic | 45.0% | |
| ! | ATATCGCACTGATCCAAACC+TGG | - | chr1_2:49974203-49974222 | Msa0074920:intron | 45.0% |
| !! | ATATATATATATATATATAG+AGG | - | chr1_2:49969709-49969728 | Msa0074920:intron | 5.0% |
| !! | TATATATATATATATATAGA+GGG | - | chr1_2:49969710-49969729 | Msa0074920:intron | 5.0% |
| !! | AATAAATTTAACAAAATAAA+AGG | + | chr1_2:49969958-49969977 | None:intergenic | 5.0% |
| !!! | TTTAACTTAATTATAATTTT+TGG | + | chr1_2:49971694-49971713 | None:intergenic | 5.0% |
| ! | GCAGTTCGTGTTCATCGGTT+TGG | + | chr1_2:49967419-49967438 | None:intergenic | 50.0% |
| ATACTATACCCCCCCTAGGT+TGG | - | chr1_2:49967719-49967738 | Msa0074920:three_prime_UTR | 50.0% | |
| TCTCTTTCAGTTTCCCTGGC+AGG | - | chr1_2:49967812-49967831 | Msa0074920:three_prime_UTR | 50.0% | |
| !!! | GTTTTGTTTCTGCTCCTGCC+AGG | + | chr1_2:49967829-49967848 | None:intergenic | 50.0% |
| AGGGAGAGGAAAAGCAGTGT+TGG | + | chr1_2:49967879-49967898 | None:intergenic | 50.0% | |
| ! | TTTGTGTGGCAGGTTGGGTT+TGG | - | chr1_2:49967994-49968013 | Msa0074920:intron | 50.0% |
| GAAATCTCCGTGGGAGTCAT+TGG | - | chr1_2:49968490-49968509 | Msa0074920:intron | 50.0% | |
| TGCACATCCAATGACTCCCA+CGG | + | chr1_2:49968500-49968519 | None:intergenic | 50.0% | |
| CAAAGTAGACCGAGATGACG+TGG | + | chr1_2:49969225-49969244 | None:intergenic | 50.0% | |
| GCTTGCCTTTCTCTGTTACG+TGG | - | chr1_2:49969873-49969892 | Msa0074920:intron | 50.0% | |
| AGGAGGGGAATAGGAAAGAG+TGG | + | chr1_2:49969922-49969941 | None:intergenic | 50.0% | |
| TCATGGAACAGGAGGGGAAT+AGG | + | chr1_2:49969931-49969950 | None:intergenic | 50.0% | |
| CTATTGGGTCACCTGCTATC+AGG | - | chr1_2:49970749-49970768 | Msa0074920:intron | 50.0% | |
| GCAATATAGGTGCAAGGTGG+GGG | - | chr1_2:49971018-49971037 | Msa0074920:intron | 50.0% | |
| !! | GTTGACTTGTGCTGCTCGTT+TGG | - | chr1_2:49971056-49971075 | Msa0074920:intron | 50.0% |
| CTAGGTTGCAAATGACGCTC+AGG | - | chr1_2:49971184-49971203 | Msa0074920:intron | 50.0% | |
| TTGCAAATGACGCTCAGGGT+AGG | - | chr1_2:49971189-49971208 | Msa0074920:intron | 50.0% | |
| TGCAAATGACGCTCAGGGTA+GGG | - | chr1_2:49971190-49971209 | Msa0074920:intron | 50.0% | |
| GATAGAGGAGCTAGAAGCTG+AGG | - | chr1_2:49971217-49971236 | Msa0074920:intron | 50.0% | |
| !! | TAGTCCCTTCCTTTGAGACC+TGG | + | chr1_2:49971508-49971527 | None:intergenic | 50.0% |
| GCAATGACAAGAGCAGTTGC+AGG | + | chr1_2:49972023-49972042 | None:intergenic | 50.0% | |
| GGGAGTCTTTGTGGCAATGT+AGG | + | chr1_2:49973204-49973223 | None:intergenic | 50.0% | |
| GACGGGATAGGATCAGTATG+TGG | - | chr1_2:49973418-49973437 | Msa0074920:intron | 50.0% | |
| GGATAGGATCAGTATGTGGG+AGG | - | chr1_2:49973422-49973441 | Msa0074920:intron | 50.0% | |
| ! | GGTGCTGGAGATGCATTTGT+TGG | - | chr1_2:49973499-49973518 | Msa0074920:intron | 50.0% |
| GTTGCCCTTTGCTTCTCATG+TGG | - | chr1_2:49973841-49973860 | Msa0074920:intron | 50.0% | |
| GCTGCTCAATGTAGAGCTCT+TGG | - | chr1_2:49974162-49974181 | Msa0074920:intron | 50.0% | |
| !! | GCTGAAGCCTTGTTATGCTG+AGG | + | chr1_2:49974272-49974291 | None:intergenic | 50.0% |
| CCTATACGCGGTGGTAGGAA+TGG | + | chr1_2:49967463-49967482 | None:intergenic | 55.0% | |
| CCATTCCTACCACCGCGTAT+AGG | - | chr1_2:49967460-49967479 | Msa0074920:three_prime_UTR | 55.0% | |
| TCCTACCACCGCGTATAGGA+AGG | - | chr1_2:49967464-49967483 | Msa0074920:three_prime_UTR | 55.0% | |
| CCTACCACCGCGTATAGGAA+GGG | - | chr1_2:49967465-49967484 | Msa0074920:three_prime_UTR | 55.0% | |
| CGCTATACTATACCCCCCCT+AGG | - | chr1_2:49967715-49967734 | Msa0074920:three_prime_UTR | 55.0% | |
| GTGCAACTTCTGTGGGTCCA+TGG | - | chr1_2:49968515-49968534 | Msa0074920:intron | 55.0% | |
| GTGCAAGGTGGGGGAAATAC+CGG | - | chr1_2:49971027-49971046 | Msa0074920:intron | 55.0% | |
| GATGCTGAAAGGCCAAGGGA+AGG | - | chr1_2:49972336-49972355 | Msa0074920:intron | 55.0% | |
| ATTACCGAGGCAACGCAGGT+TGG | + | chr1_2:49972852-49972871 | None:intergenic | 55.0% | |
| AGCTATTACCGAGGCAACGC+AGG | + | chr1_2:49972856-49972875 | None:intergenic | 55.0% | |
| AGAGCTCTTGGAGCTAGGAG+TGG | - | chr1_2:49974174-49974193 | Msa0074920:intron | 55.0% | |
| CTCAGCAGCATCACAGAGAC+TGG | + | chr1_2:49974462-49974481 | None:intergenic | 55.0% | |
| CCCTTCCTATACGCGGTGGT+AGG | + | chr1_2:49967468-49967487 | None:intergenic | 60.0% | |
| ATGGCCCTTCCTATACGCGG+TGG | + | chr1_2:49967472-49967491 | None:intergenic | 60.0% | |
| ! | GTGTGGCAGGTTGGGTTTGG+TGG | - | chr1_2:49967997-49968016 | Msa0074920:intron | 60.0% |
| !! | CAGGTTGGGTTTGGTGGCGT+TGG | - | chr1_2:49968003-49968022 | Msa0074920:intron | 60.0% |
| GGAGCTAGAAGCTGAGGGTG+TGG | - | chr1_2:49971223-49971242 | Msa0074920:intron | 60.0% | |
| CATGCCAACCTGCGTTGCCT+CGG | - | chr1_2:49972845-49972864 | Msa0074920:intron | 60.0% | |
| ! | CGAGGCAACGCAGGTTGGCA+TGG | + | chr1_2:49972847-49972866 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 49967409 | 49974708 | 49967409 | ID=Msa0074920;Name=Msa0074920 |
| chr1_2 | mRNA | 49967409 | 49974708 | 49967409 | ID=Msa0074920-mRNA-1;Parent=Msa0074920;Name=Msa0074920-mRNA-1;_AED=0.31;_eAED=0.31;_QI=375|0.72|0.83|1|0.81|0.75|12|466|321 |
| chr1_2 | exon | 49967409 | 49967958 | 49967409 | ID=Msa0074920-mRNA-1:exon:15319;Parent=Msa0074920-mRNA-1 |
| chr1_2 | exon | 49968255 | 49968307 | 49968255 | ID=Msa0074920-mRNA-1:exon:15318;Parent=Msa0074920-mRNA-1 |
| chr1_2 | exon | 49968618 | 49968720 | 49968618 | ID=Msa0074920-mRNA-1:exon:15317;Parent=Msa0074920-mRNA-1 |
| chr1_2 | exon | 49969251 | 49969348 | 49969251 | ID=Msa0074920-mRNA-1:exon:15316;Parent=Msa0074920-mRNA-1 |
| chr1_2 | exon | 49969458 | 49969584 | 49969458 | ID=Msa0074920-mRNA-1:exon:15315;Parent=Msa0074920-mRNA-1 |
| chr1_2 | exon | 49969725 | 49969811 | 49969725 | ID=Msa0074920-mRNA-1:exon:15314;Parent=Msa0074920-mRNA-1 |
| chr1_2 | exon | 49970068 | 49970218 | 49970068 | ID=Msa0074920-mRNA-1:exon:15313;Parent=Msa0074920-mRNA-1 |
| chr1_2 | exon | 49970556 | 49970608 | 49970556 | ID=Msa0074920-mRNA-1:exon:15312;Parent=Msa0074920-mRNA-1 |
| chr1_2 | exon | 49970855 | 49970929 | 49970855 | ID=Msa0074920-mRNA-1:exon:15311;Parent=Msa0074920-mRNA-1 |
| chr1_2 | exon | 49974022 | 49974111 | 49974022 | ID=Msa0074920-mRNA-1:exon:15310;Parent=Msa0074920-mRNA-1 |
| chr1_2 | exon | 49974204 | 49974295 | 49974204 | ID=Msa0074920-mRNA-1:exon:15309;Parent=Msa0074920-mRNA-1 |
| chr1_2 | exon | 49974381 | 49974708 | 49974381 | ID=Msa0074920-mRNA-1:exon:15308;Parent=Msa0074920-mRNA-1 |
| chr1_2 | five_prime_UTR | 49974381 | 49974708 | 49974381 | ID=Msa0074920-mRNA-1:five_prime_utr;Parent=Msa0074920-mRNA-1 |
| chr1_2 | five_prime_UTR | 49974249 | 49974295 | 49974249 | ID=Msa0074920-mRNA-1:five_prime_utr;Parent=Msa0074920-mRNA-1 |
| chr1_2 | CDS | 49974204 | 49974248 | 49974204 | ID=Msa0074920-mRNA-1:cds;Parent=Msa0074920-mRNA-1 |
| chr1_2 | CDS | 49974022 | 49974111 | 49974022 | ID=Msa0074920-mRNA-1:cds;Parent=Msa0074920-mRNA-1 |
| chr1_2 | CDS | 49970855 | 49970929 | 49970855 | ID=Msa0074920-mRNA-1:cds;Parent=Msa0074920-mRNA-1 |
| chr1_2 | CDS | 49970556 | 49970608 | 49970556 | ID=Msa0074920-mRNA-1:cds;Parent=Msa0074920-mRNA-1 |
| chr1_2 | CDS | 49970068 | 49970218 | 49970068 | ID=Msa0074920-mRNA-1:cds;Parent=Msa0074920-mRNA-1 |
| chr1_2 | CDS | 49969725 | 49969811 | 49969725 | ID=Msa0074920-mRNA-1:cds;Parent=Msa0074920-mRNA-1 |
| chr1_2 | CDS | 49969458 | 49969584 | 49969458 | ID=Msa0074920-mRNA-1:cds;Parent=Msa0074920-mRNA-1 |
| chr1_2 | CDS | 49969251 | 49969348 | 49969251 | ID=Msa0074920-mRNA-1:cds;Parent=Msa0074920-mRNA-1 |
| chr1_2 | CDS | 49968618 | 49968720 | 49968618 | ID=Msa0074920-mRNA-1:cds;Parent=Msa0074920-mRNA-1 |
| chr1_2 | CDS | 49968255 | 49968307 | 49968255 | ID=Msa0074920-mRNA-1:cds;Parent=Msa0074920-mRNA-1 |
| chr1_2 | CDS | 49967875 | 49967958 | 49967875 | ID=Msa0074920-mRNA-1:cds;Parent=Msa0074920-mRNA-1 |
| chr1_2 | three_prime_UTR | 49967409 | 49967874 | 49967409 | ID=Msa0074920-mRNA-1:three_prime_utr;Parent=Msa0074920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
