Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269780 | XP_024635127.1 | 96.206 | 369 | 13 | 1 | 1 | 368 | 1 | 369 | 0.0 | 724 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269780 | sp|Q02974|KHK_RAT | 24.566 | 346 | 193 | 8 | 11 | 346 | 2 | 289 | 3.05e-18 | 87.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027100 | Msa0269780 | 0.818388 | 2.011603e-52 | -8.615850e-47 |
| Msa0074920 | Msa0269780 | 0.902421 | 9.864689e-79 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269780 | MtrunA17_Chr1g0183031 | 95.935 | 369 | 13 | 2 | 1 | 368 | 1 | 368 | 0.0 | 694 |
| Msa0269780 | MtrunA17_Chr7g0262551 | 66.944 | 360 | 118 | 1 | 9 | 368 | 6 | 364 | 0.0 | 509 |
| Msa0269780 | MtrunA17_Chr1g0183021 | 65.278 | 360 | 124 | 1 | 9 | 368 | 108 | 466 | 9.11e-171 | 484 |
| Msa0269780 | MtrunA17_Chr7g0262571 | 61.685 | 368 | 140 | 1 | 1 | 368 | 53 | 419 | 3.75e-169 | 478 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269780 | AT4G28706.2 | 63.025 | 357 | 132 | 0 | 11 | 367 | 47 | 403 | 4.42e-170 | 480 |
| Msa0269780 | AT4G28706.4 | 62.849 | 358 | 133 | 0 | 11 | 368 | 47 | 404 | 9.08e-170 | 481 |
| Msa0269780 | AT4G28706.1 | 63.025 | 357 | 131 | 1 | 11 | 367 | 45 | 400 | 2.83e-168 | 476 |
| Msa0269780 | AT4G28706.3 | 63.025 | 357 | 131 | 1 | 11 | 367 | 47 | 402 | 3.49e-168 | 475 |
| Msa0269780 | AT5G43910.2 | 53.678 | 367 | 166 | 1 | 1 | 367 | 1 | 363 | 4.76e-139 | 400 |
| Msa0269780 | AT5G43910.4 | 52.615 | 325 | 150 | 1 | 1 | 325 | 1 | 321 | 3.58e-118 | 345 |
| Msa0269780 | AT5G43910.5 | 50.530 | 283 | 140 | 0 | 1 | 283 | 1 | 283 | 3.41e-99 | 296 |
| Msa0269780 | AT5G43910.1 | 50.178 | 281 | 140 | 0 | 1 | 281 | 1 | 281 | 8.89e-99 | 295 |
| Msa0269780 | AT5G43910.3 | 50.903 | 277 | 136 | 0 | 1 | 277 | 1 | 277 | 1.36e-98 | 294 |
Find 131 sgRNAs with CRISPR-Local
Find 351 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTGTACTTCTAAGTTTC+TGG | 0.136833 | 2_3:+802985 | Msa0269780:three_prime_UTR |
| AAGCTTACCAAACAAGTTTA+AGG | 0.156663 | 2_3:-803253 | None:intergenic |
| TATTATTGTATAGTATTATT+TGG | 0.168122 | 2_3:-797261 | None:intergenic |
| CAACTAAGATGGATATATTT+TGG | 0.178686 | 2_3:-800949 | None:intergenic |
| CTATTCTTGGTGTCTGGTTT+TGG | 0.209515 | 2_3:-797665 | None:intergenic |
| GTTGTTCTAAATTAAATTTA+AGG | 0.225336 | 2_3:+803033 | Msa0269780:three_prime_UTR |
| GAATTGAGTGGTTCTATTCT+TGG | 0.228607 | 2_3:-797678 | None:intergenic |
| TTACAATGTATTGTTAAATA+AGG | 0.234535 | 2_3:+803223 | Msa0269780:three_prime_UTR |
| GTATGTGGGAGGTTATATTT+TGG | 0.242581 | 2_3:+802068 | Msa0269780:CDS |
| AAATTTGTAGAGACATTATT+TGG | 0.267752 | 2_3:+803119 | Msa0269780:three_prime_UTR |
| AAAACCTTAGAAATTATTCT+TGG | 0.273984 | 2_3:-799722 | None:intergenic |
| TAAATTTGTGATTGCAACTT+TGG | 0.288479 | 2_3:+801233 | Msa0269780:CDS |
| TGAAAGTTGAAGAAGGTTAA+TGG | 0.294883 | 2_3:-797098 | None:intergenic |
| CTTACATCCTTAAACTTGTT+TGG | 0.298151 | 2_3:+803246 | Msa0269780:three_prime_UTR |
| AATTTCTGCCATGGTGAAAT+TGG | 0.300417 | 2_3:-797211 | None:intergenic |
| AAAGCCAAGAATAATTTCTA+AGG | 0.303177 | 2_3:+799718 | Msa0269780:CDS |
| GTGTTGGAAGACATTAATTA+AGG | 0.307724 | 2_3:-797469 | None:intergenic |
| GTTGACTTGTGCTGCTCGTT+TGG | 0.315907 | 2_3:+799691 | Msa0269780:CDS |
| CAGGTTGGGTTTGGTGGCGT+TGG | 0.319074 | 2_3:+797611 | Msa0269780:intron |
| GGAAGGATTGAATGACCTTC+TGG | 0.319125 | 2_3:+800988 | Msa0269780:CDS |
| CATAGACCAACAACTTCTTT+AGG | 0.331164 | 2_3:-803199 | None:intergenic |
| ACTTGTTTGGTAAGCTTACT+TGG | 0.332520 | 2_3:+803259 | Msa0269780:three_prime_UTR |
| TTTGTGTGGCAGGTTGGGTT+TGG | 0.343196 | 2_3:+797602 | Msa0269780:intron |
| TTGACTTGTGCTGCTCGTTT+GGG | 0.347544 | 2_3:+799692 | Msa0269780:CDS |
| TTAATAAAGTATGCCAGGTT+TGG | 0.355803 | 2_3:-802852 | None:intergenic |
| AGGCATCCTAACATCAAAAT+AGG | 0.360561 | 2_3:-800635 | None:intergenic |
| TCAATAATAATGTAGCTAAA+TGG | 0.361983 | 2_3:-800165 | None:intergenic |
| GCAGTTCGTGTTCATCGGTT+TGG | 0.369571 | 2_3:-797026 | None:intergenic |
| AGCACAAGTCAACGCATTTC+CGG | 0.383878 | 2_3:-799681 | None:intergenic |
| GTGGTTCTATTCTTGGTGTC+TGG | 0.388614 | 2_3:-797671 | None:intergenic |
| TGGTAAGCTTACTTGGTAAT+CGG | 0.395404 | 2_3:+803266 | Msa0269780:three_prime_UTR |
| TGTCTTCCTAAAGAAGTTGT+TGG | 0.399127 | 2_3:+803193 | Msa0269780:three_prime_UTR |
| AAATTTGTGATTGCAACTTT+GGG | 0.399648 | 2_3:+801234 | Msa0269780:CDS |
| TAAAGTGTCACTTGGTAGAT+TGG | 0.403907 | 2_3:+803161 | Msa0269780:three_prime_UTR |
| AGGTTTGGATCAGTGCGATA+TGG | 0.407682 | 2_3:-802837 | None:intergenic |
| TCTCTTTCAGTTTCCCTGGC+AGG | 0.415081 | 2_3:+797421 | Msa0269780:intron |
| GCAATCACAAATTTAAGTCT+TGG | 0.419317 | 2_3:-801225 | None:intergenic |
| GTGTGGCAGGTTGGGTTTGG+TGG | 0.423838 | 2_3:+797605 | Msa0269780:intron |
| CCATTCCTACCACCGCGTAT+AGG | 0.428040 | 2_3:+797070 | Msa0269780:five_prime_UTR |
| TGTGGATACTTCTTCATTTG+TGG | 0.428757 | 2_3:+799876 | Msa0269780:CDS |
| ATTGAATGACCTTCTGGACT+TGG | 0.430538 | 2_3:+800994 | Msa0269780:CDS |
| CCTTTCAGCATCAACTAAGA+TGG | 0.434238 | 2_3:-800960 | None:intergenic |
| TTTGCACGCGAAAGATCTTC+CGG | 0.437545 | 2_3:-800580 | None:intergenic |
| GGTGCTGGGGATGCATTTGT+TGG | 0.438231 | 2_3:+802134 | Msa0269780:CDS |
| GCAATGACAAGAGCAGTTGC+AGG | 0.440063 | 2_3:-800655 | None:intergenic |
| TAATTAGAGCCTCAAATATC+CGG | 0.446017 | 2_3:+802872 | Msa0269780:exon |
| AGAATTGAAACTAGTGCTCT+TGG | 0.449446 | 2_3:-801192 | None:intergenic |
| CGAATGCAGTTCGTGTTCAT+CGG | 0.452772 | 2_3:-797031 | None:intergenic |
| GAATAGAACCACTCAATTCA+AGG | 0.452926 | 2_3:+797682 | Msa0269780:CDS |
| GCTGCTCAATGTAGAGCTCT+TGG | 0.454335 | 2_3:+802798 | Msa0269780:CDS |
| CTTATTGATACAACTGGTGC+TGG | 0.460294 | 2_3:+802119 | Msa0269780:CDS |
| AGATCTTCCGGTACCATTGT+AGG | 0.463214 | 2_3:-800568 | None:intergenic |
| TGCTCTTGTCATTGCTAAAG+AGG | 0.464049 | 2_3:+800663 | Msa0269780:CDS |
| CTCAGCAGCATCACAGAGAC+TGG | 0.464348 | 2_3:-803095 | None:intergenic |
| TATGAAAATAATACTAGTAT+TGG | 0.464848 | 2_3:+797146 | Msa0269780:five_prime_UTR |
| AACTTCTCTTTCAGTTTCCC+TGG | 0.470342 | 2_3:+797417 | Msa0269780:intron |
| TCTAATTAATAAAGTATGCC+AGG | 0.474893 | 2_3:-802857 | None:intergenic |
| TCGGAGCTTATTGATACAAC+TGG | 0.481009 | 2_3:+802113 | Msa0269780:CDS |
| CTAGGTTGCAAATGACGCTC+AGG | 0.489161 | 2_3:+799819 | Msa0269780:intron |
| AGGGAGAGGAAAAGCAGTGT+TGG | 0.491482 | 2_3:-797485 | None:intergenic |
| AAATTGTTATCTGCATTGAA+TGG | 0.495412 | 2_3:+800601 | Msa0269780:CDS |
| GGAGCTAGAAGCTGAGGGTG+TGG | 0.495904 | 2_3:+799858 | Msa0269780:CDS |
| GAAATCTTTAACAATGAGAA+AGG | 0.497680 | 2_3:+801444 | Msa0269780:CDS |
| TGCAAATGACGCTCAGGGTA+GGG | 0.500517 | 2_3:+799825 | Msa0269780:CDS |
| AAGCTTGTTAATTTCTGCCA+TGG | 0.505410 | 2_3:-797220 | None:intergenic |
| GCAATATAGGTGCAAGGTGG+GGG | 0.509074 | 2_3:+799653 | Msa0269780:intron |
| GTTACAAAATTTAGAGCAGA+CGG | 0.513539 | 2_3:+802035 | Msa0269780:CDS |
| TGCATTCGATTCAGACAAAA+CGG | 0.516194 | 2_3:+797046 | Msa0269780:five_prime_UTR |
| TGTTTCCAGGTCTCAAAGGA+AGG | 0.519022 | 2_3:+800135 | Msa0269780:intron |
| CCTATACGCGGTGGTAGGAA+TGG | 0.519453 | 2_3:-797070 | None:intergenic |
| TGCAATATAGGTGCAAGGTG+GGG | 0.519555 | 2_3:+799652 | Msa0269780:intron |
| TTATTGATACAACTGGTGCT+GGG | 0.519824 | 2_3:+802120 | Msa0269780:CDS |
| TGACTTGTGAAAGTTGAAGA+AGG | 0.520049 | 2_3:-797105 | None:intergenic |
| CATGCCAACCTGCGTTGCCT+CGG | 0.527612 | 2_3:+801480 | Msa0269780:CDS |
| GACGGGATAGGATCAGTATG+TGG | 0.528060 | 2_3:+802053 | Msa0269780:CDS |
| AAATTTAGAGCAGACGGGAT+AGG | 0.530754 | 2_3:+802041 | Msa0269780:CDS |
| CGAGGCAACGCAGGTTGGCA+TGG | 0.530850 | 2_3:-801479 | None:intergenic |
| AGGTCATTCAATCCTTCCCT+TGG | 0.534609 | 2_3:-800983 | None:intergenic |
| AAGAAGACACTCACAATGAC+AGG | 0.535206 | 2_3:-797514 | None:intergenic |
| TAGTTGATGCTGAAAGGCCA+AGG | 0.535644 | 2_3:+800966 | Msa0269780:CDS |
| AATGTAGAGCTCTTGGAGCT+AGG | 0.538329 | 2_3:+802805 | Msa0269780:CDS |
| GGGTTCACACTTAGAAGAAG+TGG | 0.542271 | 2_3:+801405 | Msa0269780:CDS |
| GATAGAGGAGCTAGAAGCTG+AGG | 0.543786 | 2_3:+799852 | Msa0269780:CDS |
| TTGCAAATGACGCTCAGGGT+AGG | 0.550449 | 2_3:+799824 | Msa0269780:CDS |
| TCCTACCACCGCGTATAGGA+AGG | 0.550545 | 2_3:+797074 | Msa0269780:five_prime_UTR |
| TTGCAATATAGGTGCAAGGT+GGG | 0.552594 | 2_3:+799651 | Msa0269780:intron |
| ATGCTCAGAAAAGTTTCCTA+AGG | 0.555246 | 2_3:+801030 | Msa0269780:CDS |
| CCATCTTAGTTGATGCTGAA+AGG | 0.556239 | 2_3:+800960 | Msa0269780:CDS |
| AGGATCTCCTACAATGGTAC+CGG | 0.559044 | 2_3:+800561 | Msa0269780:CDS |
| CATTTGTTTCCAGGTCTCAA+AGG | 0.562119 | 2_3:+800131 | Msa0269780:intron |
| AGCTATTACCGAGGCAACGC+AGG | 0.562817 | 2_3:-801488 | None:intergenic |
| TGCATTGAATGGAGCTAGAG+TGG | 0.563511 | 2_3:+800612 | Msa0269780:CDS |
| GCTTACCACATGAGAAGCAA+AGG | 0.564484 | 2_3:-802482 | None:intergenic |
| GTTTCCAGGTCTCAAAGGAA+GGG | 0.571955 | 2_3:+800136 | Msa0269780:intron |
| ATATCGCACTGATCCAAACC+TGG | 0.578250 | 2_3:+802839 | Msa0269780:CDS |
| CACAGAAGGATCTCCTACAA+TGG | 0.585278 | 2_3:+800555 | Msa0269780:CDS |
| ACACTTAGAAGAAGTGGATG+TGG | 0.593132 | 2_3:+801411 | Msa0269780:CDS |
| CATAATCAGCCAAGTCCAGA+AGG | 0.594681 | 2_3:-801003 | None:intergenic |
| ATGCTTCAGAAATGTGCAGA+TGG | 0.596169 | 2_3:+801273 | Msa0269780:CDS |
| ATAAAAGCAAAGTATAATTG+TGG | 0.601966 | 2_3:+803321 | Msa0269780:three_prime_UTR |
| TTACAAAATTTAGAGCAGAC+GGG | 0.602375 | 2_3:+802036 | Msa0269780:CDS |
| GTTGTATCAATAAGCTCCGA+TGG | 0.602597 | 2_3:-802110 | None:intergenic |
| ATTACCGAGGCAACGCAGGT+TGG | 0.609993 | 2_3:-801484 | None:intergenic |
| TCAAAATCCTCAGCATAACA+AGG | 0.610008 | 2_3:+802898 | Msa0269780:three_prime_UTR |
| GTTGCCCTTTGCTTCTCATG+TGG | 0.613678 | 2_3:+802477 | Msa0269780:CDS |
| CTTACCACATGAGAAGCAAA+GGG | 0.616843 | 2_3:-802481 | None:intergenic |
| CGAACATGTATATTCACAGA+AGG | 0.631793 | 2_3:+800541 | Msa0269780:CDS |
| TAAGCTTACTTGGTAATCGG+TGG | 0.631985 | 2_3:+803269 | Msa0269780:three_prime_UTR |
| GCTGAAGCCTTGTTATGCTG+AGG | 0.632019 | 2_3:-802905 | None:intergenic |
| ACGGGATAGGATCAGTATGT+GGG | 0.632094 | 2_3:+802054 | Msa0269780:CDS |
| TATTGATACAACTGGTGCTG+GGG | 0.632340 | 2_3:+802121 | Msa0269780:CDS |
| GATGCTGAAAGGCCAAGGGA+AGG | 0.639502 | 2_3:+800971 | Msa0269780:CDS |
| CCCTTCCTATACGCGGTGGT+AGG | 0.639649 | 2_3:-797075 | None:intergenic |
| AAATGCTATAAAGTGTCACT+TGG | 0.642035 | 2_3:+803153 | Msa0269780:three_prime_UTR |
| ATAGAGGAGCTAGAAGCTGA+GGG | 0.648546 | 2_3:+799853 | Msa0269780:CDS |
| ATTGCAACTTTGGGAAAAGA+CGG | 0.651143 | 2_3:+801243 | Msa0269780:CDS |
| GCATAATAACCAACCTAGGG+GGG | 0.653768 | 2_3:-797337 | None:intergenic |
| AGGATGAACCTTGAATTGAG+TGG | 0.655549 | 2_3:-797690 | None:intergenic |
| AGAGCTCTTGGAGCTAGGAG+TGG | 0.656252 | 2_3:+802810 | Msa0269780:CDS |
| AGCATAATAACCAACCTAGG+GGG | 0.658870 | 2_3:-797338 | None:intergenic |
| TAGGTTGCAAATGACGCTCA+GGG | 0.659046 | 2_3:+799820 | Msa0269780:intron |
| CCTACCACCGCGTATAGGAA+GGG | 0.665317 | 2_3:+797075 | Msa0269780:five_prime_UTR |
| AGTTGATGCTGAAAGGCCAA+GGG | 0.668854 | 2_3:+800967 | Msa0269780:CDS |
| GTATCAATAAGCTCCGATGG+TGG | 0.679992 | 2_3:-802107 | None:intergenic |
| GGATAGGATCAGTATGTGGG+AGG | 0.683588 | 2_3:+802057 | Msa0269780:CDS |
| TTTGCAATATAGGTGCAAGG+TGG | 0.684597 | 2_3:+799650 | Msa0269780:intron |
| ATGGCCCTTCCTATACGCGG+TGG | 0.686587 | 2_3:-797079 | None:intergenic |
| ACTCTTGACCAATTTCACCA+TGG | 0.703995 | 2_3:+797203 | Msa0269780:five_prime_UTR |
| CATTTCACAGACATGGACAG+AGG | 0.705633 | 2_3:+801158 | Msa0269780:intron |
| GTGTTTGCAATATAGGTGCA+AGG | 0.708600 | 2_3:+799647 | Msa0269780:intron |
| TTAATGGCCCTTCCTATACG+CGG | 0.757508 | 2_3:-797082 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATTGTATAGTATTATT+TGG | - | chr2_3:797264-797283 | None:intergenic | 10.0% |
| !! | TTGTCAAAAAAATATAATTA+CGG | + | chr2_3:797805-797824 | Msa0269780:intron | 10.0% |
| !!! | GCTAATTATATTTTAAATAT+TGG | + | chr2_3:798762-798781 | Msa0269780:intron | 10.0% |
| !! | TATGAAAATAATACTAGTAT+TGG | + | chr2_3:797146-797165 | Msa0269780:five_prime_UTR | 15.0% |
| !! | ATTGTAATAATAAAAACACA+AGG | - | chr2_3:797727-797746 | None:intergenic | 15.0% |
| !! | AAAAACAAATCTTATGTATA+AGG | + | chr2_3:797910-797929 | Msa0269780:intron | 15.0% |
| !! | ACAAATTAGTAGTATTAATT+AGG | + | chr2_3:799086-799105 | Msa0269780:intron | 15.0% |
| !! | CAAATTAGTAGTATTAATTA+GGG | + | chr2_3:799087-799106 | Msa0269780:intron | 15.0% |
| !! | AAATTAGTAGTATTAATTAG+GGG | + | chr2_3:799088-799107 | Msa0269780:intron | 15.0% |
| !!! | TTGAAAATTGAAGTAAATTT+TGG | - | chr2_3:799937-799956 | None:intergenic | 15.0% |
| !!! | GACATATTTTATTTTAGATA+TGG | - | chr2_3:800008-800027 | None:intergenic | 15.0% |
| !! | ATGTAAAATCATTTAAGTAA+TGG | - | chr2_3:800209-800228 | None:intergenic | 15.0% |
| !! | TATAAGTATATGAAAGTTAT+TGG | + | chr2_3:800292-800311 | Msa0269780:intron | 15.0% |
| !! | ATCATAATTCTAAATAGATT+CGG | + | chr2_3:800725-800744 | Msa0269780:intron | 15.0% |
| !! | TTAATAAAAACTGAGAATAT+AGG | + | chr2_3:801650-801669 | Msa0269780:intron | 15.0% |
| !! | TAATAAAAACTGAGAATATA+GGG | + | chr2_3:801651-801670 | Msa0269780:intron | 15.0% |
| !!! | GTTGTTCTAAATTAAATTTA+AGG | + | chr2_3:803033-803052 | Msa0269780:three_prime_UTR | 15.0% |
| !! | TTACAATGTATTGTTAAATA+AGG | + | chr2_3:803223-803242 | Msa0269780:three_prime_UTR | 15.0% |
| !! | AAGAAAAGAAAAAAAATGGA+AGG | - | chr2_3:797296-797315 | None:intergenic | 20.0% |
| !! | AATAATGAATACTATAGACA+AGG | + | chr2_3:797878-797897 | Msa0269780:intron | 20.0% |
| !! | AAAATATTACCCTATCTTAA+TGG | - | chr2_3:798622-798641 | None:intergenic | 20.0% |
| !!! | TGTATAATTTTAGTCAAAGT+GGG | + | chr2_3:798705-798724 | Msa0269780:intron | 20.0% |
| !!! | TTATATTTTAAATATTGGCG+TGG | + | chr2_3:798767-798786 | Msa0269780:intron | 20.0% |
| !! | AAATGTGAAAAAAGTAAAGA+GGG | - | chr2_3:798960-798979 | None:intergenic | 20.0% |
| !! | CAAAAATAAAATCAAATGGA+TGG | + | chr2_3:799173-799192 | Msa0269780:intron | 20.0% |
| !! | TCAATATTTCTTAATGATGT+TGG | + | chr2_3:799286-799305 | Msa0269780:intron | 20.0% |
| !!! | AAAGTCTTTTAAGATCTATT+GGG | + | chr2_3:799369-799388 | Msa0269780:intron | 20.0% |
| !!! | CTTATATTAAACACATGTTT+TGG | - | chr2_3:799512-799531 | None:intergenic | 20.0% |
| !! | AAAACCTTAGAAATTATTCT+TGG | - | chr2_3:799725-799744 | None:intergenic | 20.0% |
| !! | CTAATTAATTTCTAATGACT+AGG | + | chr2_3:799801-799820 | Msa0269780:intron | 20.0% |
| !!! | AAAAATAATCTAAAGCAAAC+AGG | + | chr2_3:799911-799930 | Msa0269780:intron | 20.0% |
| !! | TCAATAATAATGTAGCTAAA+TGG | - | chr2_3:800168-800187 | None:intergenic | 20.0% |
| !! | TTAAGTTAAATTTAAGCACT+AGG | + | chr2_3:800339-800358 | Msa0269780:intron | 20.0% |
| !!! | ACAAGAACATTAGTTAATTT+TGG | + | chr2_3:801106-801125 | Msa0269780:intron | 20.0% |
| !!! | CAAGAACATTAGTTAATTTT+GGG | + | chr2_3:801107-801126 | Msa0269780:intron | 20.0% |
| !!! | ACTTGATAATTATATGAGAA+GGG | - | chr2_3:801531-801550 | None:intergenic | 20.0% |
| !! | AAAGTAATTGTAAGCATATA+TGG | + | chr2_3:801623-801642 | Msa0269780:intron | 20.0% |
| !! | ACATACTTTACATTGAAAAT+CGG | + | chr2_3:801689-801708 | Msa0269780:intron | 20.0% |
| !!! | TATGATAATGCACAATTATT+AGG | - | chr2_3:801738-801757 | None:intergenic | 20.0% |
| !! | TGATTAGAAAGGAAAAAAAA+AGG | - | chr2_3:801880-801899 | None:intergenic | 20.0% |
| !!! | TTTTTTTCCTTTCTAATCAA+TGG | + | chr2_3:801881-801900 | Msa0269780:intron | 20.0% |
| !!! | TCTAAATTTTGTAACATTCT+AGG | - | chr2_3:802030-802049 | None:intergenic | 20.0% |
| !! | ATATAAACAAAACAGTTGTT+TGG | - | chr2_3:802373-802392 | None:intergenic | 20.0% |
| !! | TATATCATCTTATCACTATT+TGG | - | chr2_3:802530-802549 | None:intergenic | 20.0% |
| !!! | TATATTAATGTGTTTGTTGT+TGG | + | chr2_3:802754-802773 | Msa0269780:intron | 20.0% |
| !! | AAATTTGTAGAGACATTATT+TGG | + | chr2_3:803119-803138 | Msa0269780:three_prime_UTR | 20.0% |
| !!! | TATACTTTGCTTTTATGATT+TGG | - | chr2_3:803317-803336 | None:intergenic | 20.0% |
| !! | ATAAAAGCAAAGTATAATTG+TGG | + | chr2_3:803321-803340 | Msa0269780:three_prime_UTR | 20.0% |
| ! | CGTGAAGAAAAGAAAAAAAA+TGG | - | chr2_3:797300-797319 | None:intergenic | 25.0% |
| ! | AATGAATGAAATTGTTTGTG+TGG | + | chr2_3:797588-797607 | Msa0269780:intron | 25.0% |
| ! | AATAAAAACACAAGGAAAAG+AGG | - | chr2_3:797719-797738 | None:intergenic | 25.0% |
| ! | TATTACAATGAAGTTCCATT+TGG | + | chr2_3:797738-797757 | Msa0269780:intron | 25.0% |
| !!! | GAGGTATAACTAATTTTGAT+TGG | - | chr2_3:797765-797784 | None:intergenic | 25.0% |
| ! | ACAAATCTTATGTATAAGGA+CGG | + | chr2_3:797914-797933 | Msa0269780:intron | 25.0% |
| ! | TAAGAATGTCTTAAGAGTTA+AGG | - | chr2_3:797967-797986 | None:intergenic | 25.0% |
| !!! | CATTGTTTAACATTTGTTGT+TGG | + | chr2_3:798010-798029 | Msa0269780:intron | 25.0% |
| ! | ATTATTAATTGAAATCTCCG+TGG | + | chr2_3:798086-798105 | Msa0269780:intron | 25.0% |
| ! | TTATTAATTGAAATCTCCGT+GGG | + | chr2_3:798087-798106 | Msa0269780:intron | 25.0% |
| ! | AATTGTCCTTAAAAAATCCA+TGG | - | chr2_3:798141-798160 | None:intergenic | 25.0% |
| ! | TATATCTCTTGAACTTCATA+TGG | + | chr2_3:798481-798500 | Msa0269780:intron | 25.0% |
| !!! | CTGTATAATTTTAGTCAAAG+TGG | + | chr2_3:798704-798723 | Msa0269780:intron | 25.0% |
| !!! | TTTGATAGTGAGTACTATTA+TGG | + | chr2_3:798739-798758 | Msa0269780:intron | 25.0% |
| !!! | TTGATAGTGAGTACTATTAT+GGG | + | chr2_3:798740-798759 | Msa0269780:intron | 25.0% |
| ! | AATGTGAAAAAAGTAAAGAG+GGG | - | chr2_3:798959-798978 | None:intergenic | 25.0% |
| ! | GAAATGTGAAAAAAGTAAAG+AGG | - | chr2_3:798961-798980 | None:intergenic | 25.0% |
| !! | TATTAATTAGGGGTATGTTT+AGG | + | chr2_3:799098-799117 | Msa0269780:intron | 25.0% |
| ! | ATGCATCTAGTAATTTGAAA+AGG | + | chr2_3:799134-799153 | Msa0269780:intron | 25.0% |
| ! | TTGAAAAGGTGATTACATTT+AGG | + | chr2_3:799148-799167 | Msa0269780:intron | 25.0% |
| ! | TGAAAAGGTGATTACATTTA+GGG | + | chr2_3:799149-799168 | Msa0269780:intron | 25.0% |
| ! | GGGACAAAAATAAAATCAAA+TGG | + | chr2_3:799169-799188 | Msa0269780:intron | 25.0% |
| !!! | CAAAGTCTTTTAAGATCTAT+TGG | + | chr2_3:799368-799387 | Msa0269780:intron | 25.0% |
| ! | GATTCATAGAGATAAATGAT+GGG | - | chr2_3:799427-799446 | None:intergenic | 25.0% |
| ! | TGATTCATAGAGATAAATGA+TGG | - | chr2_3:799428-799447 | None:intergenic | 25.0% |
| ! | TTAACACAATCCTATAAAAC+TGG | - | chr2_3:799559-799578 | None:intergenic | 25.0% |
| ! | AAAGCCAAGAATAATTTCTA+AGG | + | chr2_3:799718-799737 | Msa0269780:CDS | 25.0% |
| ! | ATTAATTAGCCACATTCATA+AGG | - | chr2_3:799790-799809 | None:intergenic | 25.0% |
| ! | AAATAGCAAGTTTATGATGT+TGG | - | chr2_3:800053-800072 | None:intergenic | 25.0% |
| ! | AATTAGATTTCTTAAGCATG+TGG | + | chr2_3:800418-800437 | Msa0269780:intron | 25.0% |
| ! | AAATTGTTATCTGCATTGAA+TGG | + | chr2_3:800601-800620 | Msa0269780:CDS | 25.0% |
| ! | GTTGTAGCATAATGTAATAT+AGG | + | chr2_3:800699-800718 | Msa0269780:intron | 25.0% |
| ! | TCTAAGTAAATTCTCATTGT+TGG | + | chr2_3:800796-800815 | Msa0269780:intron | 25.0% |
| !! | AATTCAATTAGCTTGGTTTA+TGG | - | chr2_3:800909-800928 | None:intergenic | 25.0% |
| !! | CAACTAAGATGGATATATTT+TGG | - | chr2_3:800952-800971 | None:intergenic | 25.0% |
| !!! | CACTAGTTTCAATTCTTTTA+AGG | + | chr2_3:801199-801218 | Msa0269780:CDS | 25.0% |
| ! | TAAATTTGTGATTGCAACTT+TGG | + | chr2_3:801233-801252 | Msa0269780:CDS | 25.0% |
| ! | AAATTTGTGATTGCAACTTT+GGG | + | chr2_3:801234-801253 | Msa0269780:CDS | 25.0% |
| ! | GAAATCTTTAACAATGAGAA+AGG | + | chr2_3:801444-801463 | Msa0269780:CDS | 25.0% |
| !! | TTGATAATTATATGAGAAGG+GGG | - | chr2_3:801529-801548 | None:intergenic | 25.0% |
| !! | CTTGATAATTATATGAGAAG+GGG | - | chr2_3:801530-801549 | None:intergenic | 25.0% |
| !! | CACTTGATAATTATATGAGA+AGG | - | chr2_3:801532-801551 | None:intergenic | 25.0% |
| ! | AAGGAAAAAAAAAGGTTGTA+TGG | - | chr2_3:801872-801891 | None:intergenic | 25.0% |
| ! | TTAATTCATGGAATGTTAAG+AGG | - | chr2_3:802184-802203 | None:intergenic | 25.0% |
| !! | TTTATCGTAAATTTGAGATC+AGG | - | chr2_3:802236-802255 | None:intergenic | 25.0% |
| ! | GATAGCTGCAAATAAAATAA+AGG | - | chr2_3:802431-802450 | None:intergenic | 25.0% |
| ! | GAAGCAATTTAACTGAAATT+AGG | + | chr2_3:802680-802699 | Msa0269780:intron | 25.0% |
| ! | TCTAATTAATAAAGTATGCC+AGG | - | chr2_3:802860-802879 | None:intergenic | 25.0% |
| !! | CTTTTGTAAACTAAAATACG+AGG | - | chr2_3:802943-802962 | None:intergenic | 25.0% |
| TGAAAGTTGAAGAAGGTTAA+TGG | - | chr2_3:797101-797120 | None:intergenic | 30.0% | |
| GTGTTGGAAGACATTAATTA+AGG | - | chr2_3:797472-797491 | None:intergenic | 30.0% | |
| ! | ACTGTTATGTTTTCTCATTC+TGG | + | chr2_3:797547-797566 | Msa0269780:intron | 30.0% |
| !!! | CTAATTTTGATTGGTCCAAA+TGG | - | chr2_3:797756-797775 | None:intergenic | 30.0% |
| !!! | TGAGTTCATTGATTTTTGTG+AGG | - | chr2_3:797784-797803 | None:intergenic | 30.0% |
| GTTGACAAATTTAGTTAGCA+TGG | - | chr2_3:797835-797854 | None:intergenic | 30.0% | |
| ! | GAATCAATATGTGTGCTTTT+TGG | + | chr2_3:798049-798068 | Msa0269780:intron | 30.0% |
| ! | GTTATCTAGAGTTTGATTGA+AGG | + | chr2_3:798255-798274 | Msa0269780:intron | 30.0% |
| TTAGAAAGTTCACAACAATG+TGG | + | chr2_3:798549-798568 | Msa0269780:intron | 30.0% | |
| TCCTAAAGAACTATTAGCAA+TGG | + | chr2_3:798575-798594 | Msa0269780:intron | 30.0% | |
| ACCATTGCTAATAGTTCTTT+AGG | - | chr2_3:798579-798598 | None:intergenic | 30.0% | |
| ! | TTTTGCTCTACCATTAAGAT+AGG | + | chr2_3:798609-798628 | Msa0269780:intron | 30.0% |
| TTTGCTCTACCATTAAGATA+GGG | + | chr2_3:798610-798629 | Msa0269780:intron | 30.0% | |
| !!! | TGGGTTGCATTTTTTAAGAA+AGG | - | chr2_3:798797-798816 | None:intergenic | 30.0% |
| TCAAATGGATGGTTACATTA+AGG | + | chr2_3:799184-799203 | Msa0269780:intron | 30.0% | |
| CAAATGGATGGTTACATTAA+GGG | + | chr2_3:799185-799204 | Msa0269780:intron | 30.0% | |
| TCGTTAAAAGAGTTTCACAT+AGG | + | chr2_3:799320-799339 | Msa0269780:intron | 30.0% | |
| AGAAATTGTGTTAGAAATCG+TGG | - | chr2_3:799588-799607 | None:intergenic | 30.0% | |
| TGAATGTGTGTTTGCAATAT+AGG | + | chr2_3:799640-799659 | Msa0269780:intron | 30.0% | |
| ACTCAAAAACCTTATGAATG+TGG | + | chr2_3:799778-799797 | Msa0269780:intron | 30.0% | |
| CAAGTGAAAAATTAGGAGAA+AGG | - | chr2_3:800250-800269 | None:intergenic | 30.0% | |
| ! | TTCTCCTAATTTTTCACTTG+TGG | + | chr2_3:800250-800269 | Msa0269780:intron | 30.0% |
| ! | TCTCCTAATTTTTCACTTGT+GGG | + | chr2_3:800251-800270 | Msa0269780:intron | 30.0% |
| !! | AAGCACTAGGAGTATTAAAA+AGG | + | chr2_3:800352-800371 | Msa0269780:intron | 30.0% |
| CTCACTAGACATTATGTTAT+TGG | - | chr2_3:800383-800402 | None:intergenic | 30.0% | |
| TGCTAATTTATTCTACAACG+TGG | + | chr2_3:800502-800521 | Msa0269780:intron | 30.0% | |
| ! | CTATTAGTACTTTTCTCAAG+TGG | + | chr2_3:800771-800790 | Msa0269780:intron | 30.0% |
| AAGTAAATTCTCATTGTTGG+AGG | + | chr2_3:800799-800818 | Msa0269780:intron | 30.0% | |
| AGGTATTCCTTCACAATATT+TGG | - | chr2_3:800845-800864 | None:intergenic | 30.0% | |
| TAATTGAATTTCGCTCTTAC+AGG | + | chr2_3:800919-800938 | Msa0269780:intron | 30.0% | |
| GCAATCACAAATTTAAGTCT+TGG | - | chr2_3:801228-801247 | None:intergenic | 30.0% | |
| TATATGAATGCATCATGACA+AGG | - | chr2_3:801332-801351 | None:intergenic | 30.0% | |
| GATGCATTCATATACAAGAA+TGG | + | chr2_3:801338-801357 | Msa0269780:intron | 30.0% | |
| ! | TTCAATTTACTTTCTAGCAG+AGG | + | chr2_3:801384-801403 | Msa0269780:intron | 30.0% |
| ! | TCAATTTACTTTCTAGCAGA+GGG | + | chr2_3:801385-801404 | Msa0269780:intron | 30.0% |
| TGATAATTATATGAGAAGGG+GGG | - | chr2_3:801528-801547 | None:intergenic | 30.0% | |
| !!! | TAGCTATTTCTTCCCTATTT+TGG | + | chr2_3:801810-801829 | Msa0269780:intron | 30.0% |
| CAATGTAGGTTACCAAAATA+GGG | - | chr2_3:801825-801844 | None:intergenic | 30.0% | |
| ! | TATAGCACCATTGATTAGAA+AGG | - | chr2_3:801891-801910 | None:intergenic | 30.0% |
| ! | GTTACAAAATTTAGAGCAGA+CGG | + | chr2_3:802035-802054 | Msa0269780:CDS | 30.0% |
| ! | TTACAAAATTTAGAGCAGAC+GGG | + | chr2_3:802036-802055 | Msa0269780:CDS | 30.0% |
| ! | TATGTGGGAGGTTATATTTT+GGG | + | chr2_3:802069-802088 | Msa0269780:CDS | 30.0% |
| ATCTGAAAAAATTCCACCAT+CGG | + | chr2_3:802094-802113 | Msa0269780:CDS | 30.0% | |
| !! | TTTGTTGGAGCAGTTTTATA+TGG | + | chr2_3:802149-802168 | Msa0269780:CDS | 30.0% |
| ! | AACGATCGATTTCAAATTGA+TGG | + | chr2_3:802295-802314 | Msa0269780:intron | 30.0% |
| CTGAAATTAGGAGAAAATCA+AGG | + | chr2_3:802692-802711 | Msa0269780:intron | 30.0% | |
| TAGCAGTTAATAACAAACAC+AGG | - | chr2_3:802734-802753 | None:intergenic | 30.0% | |
| TTAATAAAGTATGCCAGGTT+TGG | - | chr2_3:802855-802874 | None:intergenic | 30.0% | |
| TAATTAGAGCCTCAAATATC+CGG | + | chr2_3:802872-802891 | Msa0269780:exon | 30.0% | |
| ! | AAATGCTATAAAGTGTCACT+TGG | + | chr2_3:803153-803172 | Msa0269780:three_prime_UTR | 30.0% |
| ! | CTTACATCCTTAAACTTGTT+TGG | + | chr2_3:803246-803265 | Msa0269780:three_prime_UTR | 30.0% |
| AAGCTTACCAAACAAGTTTA+AGG | - | chr2_3:803256-803275 | None:intergenic | 30.0% | |
| TGGCAAATCCTGAAAAATTA+TGG | + | chr2_3:803289-803308 | Msa0269780:three_prime_UTR | 30.0% | |
| GGCAAATCCTGAAAAATTAT+GGG | + | chr2_3:803290-803309 | Msa0269780:three_prime_UTR | 30.0% | |
| ! | ATTTGGACCCATAATTTTTC+AGG | - | chr2_3:803300-803319 | None:intergenic | 30.0% |
| TGCATTCGATTCAGACAAAA+CGG | + | chr2_3:797046-797065 | Msa0269780:five_prime_UTR | 35.0% | |
| ! | TGACTTGTGAAAGTTGAAGA+AGG | - | chr2_3:797108-797127 | None:intergenic | 35.0% |
| AATTTCTGCCATGGTGAAAT+TGG | - | chr2_3:797214-797233 | None:intergenic | 35.0% | |
| !! | AAGCTTGTTAATTTCTGCCA+TGG | - | chr2_3:797223-797242 | None:intergenic | 35.0% |
| TAGCATAATAACCAACCTAG+GGG | - | chr2_3:797342-797361 | None:intergenic | 35.0% | |
| GTAGCATAATAACCAACCTA+GGG | - | chr2_3:797343-797362 | None:intergenic | 35.0% | |
| AGTAGCATAATAACCAACCT+AGG | - | chr2_3:797344-797363 | None:intergenic | 35.0% | |
| ! | TCACAATGACAGGATTTTCA+GGG | - | chr2_3:797507-797526 | None:intergenic | 35.0% |
| AATGAAATTGTTTGTGTGGC+AGG | + | chr2_3:797592-797611 | Msa0269780:intron | 35.0% | |
| ! | GAATTGAGTGGTTCTATTCT+TGG | - | chr2_3:797681-797700 | None:intergenic | 35.0% |
| GAATAGAACCACTCAATTCA+AGG | + | chr2_3:797682-797701 | Msa0269780:CDS | 35.0% | |
| AATGTCTTAAGAGTTAAGGC+TGG | - | chr2_3:797963-797982 | None:intergenic | 35.0% | |
| ! | TTTTTATTGCGTTAACCCTC+CGG | + | chr2_3:798211-798230 | Msa0269780:intron | 35.0% |
| CAATCAAACTCTAGATAACC+AGG | - | chr2_3:798254-798273 | None:intergenic | 35.0% | |
| ! | TGAGAGAGTGTAGTTAAAGT+GGG | - | chr2_3:798438-798457 | None:intergenic | 35.0% |
| CTCACTATCAAACAAAAGCT+AGG | - | chr2_3:798731-798750 | None:intergenic | 35.0% | |
| CATACAAACAAACGACAGTT+TGG | - | chr2_3:799036-799055 | None:intergenic | 35.0% | |
| ACACAATAAAGGAAACCTGA+TGG | - | chr2_3:799402-799421 | None:intergenic | 35.0% | |
| !! | AATGATGGGTGACACAATAA+AGG | - | chr2_3:799413-799432 | None:intergenic | 35.0% |
| !! | ACCTCACATACCAGTTTTAT+AGG | + | chr2_3:799546-799565 | Msa0269780:intron | 35.0% |
| TCCTATAAAACTGGTATGTG+AGG | - | chr2_3:799550-799569 | None:intergenic | 35.0% | |
| ATTGTGTTAGAAATCGTGGT+TGG | - | chr2_3:799584-799603 | None:intergenic | 35.0% | |
| TGTGGATACTTCTTCATTTG+TGG | + | chr2_3:799876-799895 | Msa0269780:CDS | 35.0% | |
| ! | TTCCTTTTCCATTTGTTTCC+AGG | + | chr2_3:800122-800141 | Msa0269780:intron | 35.0% |
| ! | CTCCTAATTTTTCACTTGTG+GGG | + | chr2_3:800252-800271 | Msa0269780:intron | 35.0% |
| CGAACATGTATATTCACAGA+AGG | + | chr2_3:800541-800560 | Msa0269780:CDS | 35.0% | |
| AGGCATCCTAACATCAAAAT+AGG | - | chr2_3:800638-800657 | None:intergenic | 35.0% | |
| CCTTCACAATATTTGGTACA+TGG | - | chr2_3:800838-800857 | None:intergenic | 35.0% | |
| CCATGTACCAAATATTGTGA+AGG | + | chr2_3:800835-800854 | Msa0269780:intron | 35.0% | |
| GCAATTAGATGAACAGACAT+AGG | - | chr2_3:800865-800884 | None:intergenic | 35.0% | |
| AGAGCGAAATTCAATTAGCT+TGG | - | chr2_3:800916-800935 | None:intergenic | 35.0% | |
| ATGCTCAGAAAAGTTTCCTA+AGG | + | chr2_3:801030-801049 | Msa0269780:CDS | 35.0% | |
| ! | TGATTTGAGTAACTTGCCTT+AGG | - | chr2_3:801049-801068 | None:intergenic | 35.0% |
| AGAATTGAAACTAGTGCTCT+TGG | - | chr2_3:801195-801214 | None:intergenic | 35.0% | |
| ! | ATTGCAACTTTGGGAAAAGA+CGG | + | chr2_3:801243-801262 | Msa0269780:CDS | 35.0% |
| ATGACAAGGATCAAACAAAG+GGG | - | chr2_3:801318-801337 | None:intergenic | 35.0% | |
| CATGACAAGGATCAAACAAA+GGG | - | chr2_3:801319-801338 | None:intergenic | 35.0% | |
| TCATGACAAGGATCAAACAA+AGG | - | chr2_3:801320-801339 | None:intergenic | 35.0% | |
| ! | GTTTTATGTAGCTATTACCG+AGG | - | chr2_3:801500-801519 | None:intergenic | 35.0% |
| GCAATGTAGGTTACCAAAAT+AGG | - | chr2_3:801826-801845 | None:intergenic | 35.0% | |
| !! | GGTTGTATGGTGTTATTGAT+GGG | - | chr2_3:801859-801878 | None:intergenic | 35.0% |
| !! | AGGTTGTATGGTGTTATTGA+TGG | - | chr2_3:801860-801879 | None:intergenic | 35.0% |
| ! | GTATGTGGGAGGTTATATTT+TGG | + | chr2_3:802068-802087 | Msa0269780:CDS | 35.0% |
| TTATTGATACAACTGGTGCT+GGG | + | chr2_3:802120-802139 | Msa0269780:CDS | 35.0% | |
| ! | ATCGTAAATTTGAGATCAGG+CGG | - | chr2_3:802233-802252 | None:intergenic | 35.0% |
| AACAGTTCGTAAAGTGATCT+AGG | - | chr2_3:802321-802340 | None:intergenic | 35.0% | |
| !! | TTTTGATGACCGGATATTTG+AGG | - | chr2_3:802884-802903 | None:intergenic | 35.0% |
| TCAAAATCCTCAGCATAACA+AGG | + | chr2_3:802898-802917 | Msa0269780:three_prime_UTR | 35.0% | |
| TGCTTGTACTTCTAAGTTTC+TGG | + | chr2_3:802985-803004 | Msa0269780:three_prime_UTR | 35.0% | |
| !! | TAAAGTGTCACTTGGTAGAT+TGG | + | chr2_3:803161-803180 | Msa0269780:three_prime_UTR | 35.0% |
| TGTCTTCCTAAAGAAGTTGT+TGG | + | chr2_3:803193-803212 | Msa0269780:three_prime_UTR | 35.0% | |
| CATAGACCAACAACTTCTTT+AGG | - | chr2_3:803202-803221 | None:intergenic | 35.0% | |
| ACTTGTTTGGTAAGCTTACT+TGG | + | chr2_3:803259-803278 | Msa0269780:three_prime_UTR | 35.0% | |
| ! | TGGTAAGCTTACTTGGTAAT+CGG | + | chr2_3:803266-803285 | Msa0269780:three_prime_UTR | 35.0% |
| ACTCTTGACCAATTTCACCA+TGG | + | chr2_3:797203-797222 | Msa0269780:five_prime_UTR | 40.0% | |
| AGCATAATAACCAACCTAGG+GGG | - | chr2_3:797341-797360 | None:intergenic | 40.0% | |
| AACTTCTCTTTCAGTTTCCC+TGG | + | chr2_3:797417-797436 | Msa0269780:intron | 40.0% | |
| ! | CTCACAATGACAGGATTTTC+AGG | - | chr2_3:797508-797527 | None:intergenic | 40.0% |
| AAGAAGACACTCACAATGAC+AGG | - | chr2_3:797517-797536 | None:intergenic | 40.0% | |
| AAATTGTTTGTGTGGCAGGT+TGG | + | chr2_3:797596-797615 | Msa0269780:intron | 40.0% | |
| AATTGTTTGTGTGGCAGGTT+GGG | + | chr2_3:797597-797616 | Msa0269780:intron | 40.0% | |
| !!! | CTATTCTTGGTGTCTGGTTT+TGG | - | chr2_3:797668-797687 | None:intergenic | 40.0% |
| AGGATGAACCTTGAATTGAG+TGG | - | chr2_3:797693-797712 | None:intergenic | 40.0% | |
| AACACAAGGAAAAGAGGAAG+AGG | - | chr2_3:797713-797732 | None:intergenic | 40.0% | |
| TGTTGGTGTACTCATCTCTT+TGG | + | chr2_3:798027-798046 | Msa0269780:intron | 40.0% | |
| ATTGGATGTGCAACTTCTGT+GGG | + | chr2_3:798114-798133 | Msa0269780:intron | 40.0% | |
| !!! | GTGGGTCCATGGATTTTTTA+AGG | + | chr2_3:798132-798151 | Msa0269780:intron | 40.0% |
| GGATTTCTTTCTTCGAGAAC+CGG | - | chr2_3:798233-798252 | None:intergenic | 40.0% | |
| GTTCTCGAAGAAAGAAATCC+TGG | + | chr2_3:798233-798252 | Msa0269780:intron | 40.0% | |
| ! | GTGAGAGAGTGTAGTTAAAG+TGG | - | chr2_3:798439-798458 | None:intergenic | 40.0% |
| GATGACGTGGGAAAGAAAAT+GGG | - | chr2_3:798816-798835 | None:intergenic | 40.0% | |
| AGATGACGTGGGAAAGAAAA+TGG | - | chr2_3:798817-798836 | None:intergenic | 40.0% | |
| ! | TTTTCTTTCCCACGTCATCT+CGG | + | chr2_3:798817-798836 | Msa0269780:intron | 40.0% |
| AGAGGGGTTACATTAAGAGA+CGG | - | chr2_3:798943-798962 | None:intergenic | 40.0% | |
| TGGATGGTTACATTAAGGGA+CGG | + | chr2_3:799189-799208 | Msa0269780:intron | 40.0% | |
| AATAAAGGAAACCTGATGGC+AGG | - | chr2_3:799398-799417 | None:intergenic | 40.0% | |
| CGCTCATGATCATCACTATT+GGG | - | chr2_3:799453-799472 | None:intergenic | 40.0% | |
| ACGCTCATGATCATCACTAT+TGG | - | chr2_3:799454-799473 | None:intergenic | 40.0% | |
| GTGTTTGCAATATAGGTGCA+AGG | + | chr2_3:799647-799666 | Msa0269780:intron | 40.0% | |
| TTTGCAATATAGGTGCAAGG+TGG | + | chr2_3:799650-799669 | Msa0269780:intron | 40.0% | |
| TTGCAATATAGGTGCAAGGT+GGG | + | chr2_3:799651-799670 | Msa0269780:intron | 40.0% | |
| GACCTGGAAACAAATGGAAA+AGG | - | chr2_3:800127-800146 | None:intergenic | 40.0% | |
| !! | CTTTGAGACCTGGAAACAAA+TGG | - | chr2_3:800133-800152 | None:intergenic | 40.0% |
| CATTTGTTTCCAGGTCTCAA+AGG | + | chr2_3:800131-800150 | Msa0269780:intron | 40.0% | |
| AGTAATGGTGTACATACGTG+TGG | - | chr2_3:800194-800213 | None:intergenic | 40.0% | |
| AGCCCCACAAGTGAAAAATT+AGG | - | chr2_3:800257-800276 | None:intergenic | 40.0% | |
| TTCTACAACGTGGAACATTC+AGG | + | chr2_3:800512-800531 | Msa0269780:intron | 40.0% | |
| !!! | GAGTGGCCTATTTTGATGTT+AGG | + | chr2_3:800629-800648 | Msa0269780:CDS | 40.0% |
| TGCTCTTGTCATTGCTAAAG+AGG | + | chr2_3:800663-800682 | Msa0269780:CDS | 40.0% | |
| CCTTTCAGCATCAACTAAGA+TGG | - | chr2_3:800963-800982 | None:intergenic | 40.0% | |
| ! | CCATCTTAGTTGATGCTGAA+AGG | + | chr2_3:800960-800979 | Msa0269780:CDS | 40.0% |
| ATTGAATGACCTTCTGGACT+TGG | + | chr2_3:800994-801013 | Msa0269780:CDS | 40.0% | |
| TCCATGTCTGTGAAATGTGT+CGG | - | chr2_3:801155-801174 | None:intergenic | 40.0% | |
| ATGCTTCAGAAATGTGCAGA+TGG | + | chr2_3:801273-801292 | Msa0269780:CDS | 40.0% | |
| ACACTTAGAAGAAGTGGATG+TGG | + | chr2_3:801411-801430 | Msa0269780:CDS | 40.0% | |
| GTTATTGATGGGAGTCTTTG+TGG | - | chr2_3:801848-801867 | None:intergenic | 40.0% | |
| ! | AAATTTAGAGCAGACGGGAT+AGG | + | chr2_3:802041-802060 | Msa0269780:CDS | 40.0% |
| GTTGTATCAATAAGCTCCGA+TGG | - | chr2_3:802113-802132 | None:intergenic | 40.0% | |
| TCGGAGCTTATTGATACAAC+TGG | + | chr2_3:802113-802132 | Msa0269780:CDS | 40.0% | |
| CTTATTGATACAACTGGTGC+TGG | + | chr2_3:802119-802138 | Msa0269780:CDS | 40.0% | |
| ! | TATTGATACAACTGGTGCTG+GGG | + | chr2_3:802121-802140 | Msa0269780:CDS | 40.0% |
| CGTGACTCGCATTTAATTCA+TGG | - | chr2_3:802196-802215 | None:intergenic | 40.0% | |
| CGAGTCACGTTTATTGATCT+TGG | + | chr2_3:802207-802226 | Msa0269780:intron | 40.0% | |
| ! | CATTTTCTCTGGTGAGAAGT+TGG | - | chr2_3:802458-802477 | None:intergenic | 40.0% |
| CTTACCACATGAGAAGCAAA+GGG | - | chr2_3:802484-802503 | None:intergenic | 40.0% | |
| !! | TGTTTGTTGTTGGCATGTGA+TGG | + | chr2_3:802764-802783 | Msa0269780:intron | 40.0% |
| TTGGCATGTGATGGTATTAC+AGG | + | chr2_3:802773-802792 | Msa0269780:intron | 40.0% | |
| !! | ATGCTGAGGATTTTGATGAC+CGG | - | chr2_3:802894-802913 | None:intergenic | 40.0% |
| ! | TAAGCTTACTTGGTAATCGG+TGG | + | chr2_3:803269-803288 | Msa0269780:three_prime_UTR | 40.0% |
| CGAATGCAGTTCGTGTTCAT+CGG | - | chr2_3:797034-797053 | None:intergenic | 45.0% | |
| TTAATGGCCCTTCCTATACG+CGG | - | chr2_3:797085-797104 | None:intergenic | 45.0% | |
| TATACTATACCCCCCTAGGT+TGG | + | chr2_3:797328-797347 | Msa0269780:intron | 45.0% | |
| GCATAATAACCAACCTAGGG+GGG | - | chr2_3:797340-797359 | None:intergenic | 45.0% | |
| !!! | TTTTGTTTCTGCTCCTGCCA+GGG | - | chr2_3:797437-797456 | None:intergenic | 45.0% |
| !! | ATGACAGGATTTTCAGGGAG+AGG | - | chr2_3:797502-797521 | None:intergenic | 45.0% |
| !! | GTGGTTCTATTCTTGGTGTC+TGG | - | chr2_3:797674-797693 | None:intergenic | 45.0% |
| CATTGGATGTGCAACTTCTG+TGG | + | chr2_3:798113-798132 | Msa0269780:intron | 45.0% | |
| TTCTTTCTTCGAGAACCGGA+GGG | - | chr2_3:798229-798248 | None:intergenic | 45.0% | |
| TTTCTTTCTTCGAGAACCGG+AGG | - | chr2_3:798230-798249 | None:intergenic | 45.0% | |
| TAACTACACTCTCTCACGCT+TGG | + | chr2_3:798442-798461 | Msa0269780:intron | 45.0% | |
| AAAGTAGACCGAGATGACGT+GGG | - | chr2_3:798828-798847 | None:intergenic | 45.0% | |
| GGGTTACATTAAGAGACGGA+GGG | - | chr2_3:798939-798958 | None:intergenic | 45.0% | |
| ATGGTTACATTAAGGGACGG+AGG | + | chr2_3:799192-799211 | Msa0269780:intron | 45.0% | |
| TGGTTACATTAAGGGACGGA+GGG | + | chr2_3:799193-799212 | Msa0269780:intron | 45.0% | |
| TGCAATATAGGTGCAAGGTG+GGG | + | chr2_3:799652-799671 | Msa0269780:intron | 45.0% | |
| AGCACAAGTCAACGCATTTC+CGG | - | chr2_3:799684-799703 | None:intergenic | 45.0% | |
| !! | TTGACTTGTGCTGCTCGTTT+GGG | + | chr2_3:799692-799711 | Msa0269780:CDS | 45.0% |
| TAGGTTGCAAATGACGCTCA+GGG | + | chr2_3:799820-799839 | Msa0269780:intron | 45.0% | |
| !! | TCAGGGTAGGGTTTTGATAG+AGG | + | chr2_3:799837-799856 | Msa0269780:CDS | 45.0% |
| ATAGAGGAGCTAGAAGCTGA+GGG | + | chr2_3:799853-799872 | Msa0269780:CDS | 45.0% | |
| TGTTTCCAGGTCTCAAAGGA+AGG | + | chr2_3:800135-800154 | Msa0269780:intron | 45.0% | |
| GTTTCCAGGTCTCAAAGGAA+GGG | + | chr2_3:800136-800155 | Msa0269780:intron | 45.0% | |
| CACAGAAGGATCTCCTACAA+TGG | + | chr2_3:800555-800574 | Msa0269780:CDS | 45.0% | |
| AGGATCTCCTACAATGGTAC+CGG | + | chr2_3:800561-800580 | Msa0269780:CDS | 45.0% | |
| AGATCTTCCGGTACCATTGT+AGG | - | chr2_3:800571-800590 | None:intergenic | 45.0% | |
| TTTGCACGCGAAAGATCTTC+CGG | - | chr2_3:800583-800602 | None:intergenic | 45.0% | |
| TGCATTGAATGGAGCTAGAG+TGG | + | chr2_3:800612-800631 | Msa0269780:CDS | 45.0% | |
| ! | TAGTTGATGCTGAAAGGCCA+AGG | + | chr2_3:800966-800985 | Msa0269780:CDS | 45.0% |
| ! | AGTTGATGCTGAAAGGCCAA+GGG | + | chr2_3:800967-800986 | Msa0269780:CDS | 45.0% |
| AGGTCATTCAATCCTTCCCT+TGG | - | chr2_3:800986-801005 | None:intergenic | 45.0% | |
| GGAAGGATTGAATGACCTTC+TGG | + | chr2_3:800988-801007 | Msa0269780:CDS | 45.0% | |
| TCCGACACATTTCACAGACA+TGG | + | chr2_3:801151-801170 | Msa0269780:intron | 45.0% | |
| CATTTCACAGACATGGACAG+AGG | + | chr2_3:801158-801177 | Msa0269780:intron | 45.0% | |
| CAAACAAAGGGGTGGAAAAG+AGG | - | chr2_3:801307-801326 | None:intergenic | 45.0% | |
| ACAAGGATCAAACAAAGGGG+TGG | - | chr2_3:801315-801334 | None:intergenic | 45.0% | |
| GGGTTCACACTTAGAAGAAG+TGG | + | chr2_3:801405-801424 | Msa0269780:CDS | 45.0% | |
| ACGGGATAGGATCAGTATGT+GGG | + | chr2_3:802054-802073 | Msa0269780:CDS | 45.0% | |
| GTATCAATAAGCTCCGATGG+TGG | - | chr2_3:802110-802129 | None:intergenic | 45.0% | |
| ! | GCAAAGGGCAACATTTTCTC+TGG | - | chr2_3:802469-802488 | None:intergenic | 45.0% |
| GCTTACCACATGAGAAGCAA+AGG | - | chr2_3:802485-802504 | None:intergenic | 45.0% | |
| AATGTAGAGCTCTTGGAGCT+AGG | + | chr2_3:802805-802824 | Msa0269780:CDS | 45.0% | |
| AGGTTTGGATCAGTGCGATA+TGG | - | chr2_3:802840-802859 | None:intergenic | 45.0% | |
| ! | ATATCGCACTGATCCAAACC+TGG | + | chr2_3:802839-802858 | Msa0269780:CDS | 45.0% |
| !!! | TTTAACTTAATTATAATTTT+TGG | - | chr2_3:800329-800348 | None:intergenic | 5.0% |
| ! | GCAGTTCGTGTTCATCGGTT+TGG | - | chr2_3:797029-797048 | None:intergenic | 50.0% |
| TCGCTATACTATACCCCCCT+AGG | + | chr2_3:797324-797343 | Msa0269780:five_prime_UTR | 50.0% | |
| TCTCTTTCAGTTTCCCTGGC+AGG | + | chr2_3:797421-797440 | Msa0269780:intron | 50.0% | |
| !!! | GTTTTGTTTCTGCTCCTGCC+AGG | - | chr2_3:797438-797457 | None:intergenic | 50.0% |
| AGGGAGAGGAAAAGCAGTGT+TGG | - | chr2_3:797488-797507 | None:intergenic | 50.0% | |
| ! | TTTGTGTGGCAGGTTGGGTT+TGG | + | chr2_3:797602-797621 | Msa0269780:intron | 50.0% |
| GAAATCTCCGTGGGAGTCAT+TGG | + | chr2_3:798096-798115 | Msa0269780:intron | 50.0% | |
| TGCACATCCAATGACTCCCA+CGG | - | chr2_3:798106-798125 | None:intergenic | 50.0% | |
| CAAAGTAGACCGAGATGACG+TGG | - | chr2_3:798829-798848 | None:intergenic | 50.0% | |
| GGGGTTACATTAAGAGACGG+AGG | - | chr2_3:798940-798959 | None:intergenic | 50.0% | |
| AAAGGAAACCTGATGGCAGG+TGG | - | chr2_3:799395-799414 | None:intergenic | 50.0% | |
| GCAATATAGGTGCAAGGTGG+GGG | + | chr2_3:799653-799672 | Msa0269780:intron | 50.0% | |
| !! | GTTGACTTGTGCTGCTCGTT+TGG | + | chr2_3:799691-799710 | Msa0269780:CDS | 50.0% |
| CTAGGTTGCAAATGACGCTC+AGG | + | chr2_3:799819-799838 | Msa0269780:intron | 50.0% | |
| TTGCAAATGACGCTCAGGGT+AGG | + | chr2_3:799824-799843 | Msa0269780:CDS | 50.0% | |
| TGCAAATGACGCTCAGGGTA+GGG | + | chr2_3:799825-799844 | Msa0269780:CDS | 50.0% | |
| GATAGAGGAGCTAGAAGCTG+AGG | + | chr2_3:799852-799871 | Msa0269780:CDS | 50.0% | |
| !! | TAGTCCCTTCCTTTGAGACC+TGG | - | chr2_3:800143-800162 | None:intergenic | 50.0% |
| GCAATGACAAGAGCAGTTGC+AGG | - | chr2_3:800658-800677 | None:intergenic | 50.0% | |
| GGGAGTCTTTGTGGCAATGT+AGG | - | chr2_3:801839-801858 | None:intergenic | 50.0% | |
| GACGGGATAGGATCAGTATG+TGG | + | chr2_3:802053-802072 | Msa0269780:CDS | 50.0% | |
| GGATAGGATCAGTATGTGGG+AGG | + | chr2_3:802057-802076 | Msa0269780:CDS | 50.0% | |
| GTTGCCCTTTGCTTCTCATG+TGG | + | chr2_3:802477-802496 | Msa0269780:CDS | 50.0% | |
| GCTGCTCAATGTAGAGCTCT+TGG | + | chr2_3:802798-802817 | Msa0269780:CDS | 50.0% | |
| !! | GCTGAAGCCTTGTTATGCTG+AGG | - | chr2_3:802908-802927 | None:intergenic | 50.0% |
| CCTATACGCGGTGGTAGGAA+TGG | - | chr2_3:797073-797092 | None:intergenic | 55.0% | |
| CCATTCCTACCACCGCGTAT+AGG | + | chr2_3:797070-797089 | Msa0269780:five_prime_UTR | 55.0% | |
| TCCTACCACCGCGTATAGGA+AGG | + | chr2_3:797074-797093 | Msa0269780:five_prime_UTR | 55.0% | |
| CCTACCACCGCGTATAGGAA+GGG | + | chr2_3:797075-797094 | Msa0269780:five_prime_UTR | 55.0% | |
| GTGCAACTTCTGTGGGTCCA+TGG | + | chr2_3:798121-798140 | Msa0269780:intron | 55.0% | |
| GTGCAAGGTGGGGGAAATAC+CGG | + | chr2_3:799662-799681 | Msa0269780:CDS | 55.0% | |
| GATGCTGAAAGGCCAAGGGA+AGG | + | chr2_3:800971-800990 | Msa0269780:CDS | 55.0% | |
| ATTACCGAGGCAACGCAGGT+TGG | - | chr2_3:801487-801506 | None:intergenic | 55.0% | |
| AGCTATTACCGAGGCAACGC+AGG | - | chr2_3:801491-801510 | None:intergenic | 55.0% | |
| ! | GGTGCTGGGGATGCATTTGT+TGG | + | chr2_3:802134-802153 | Msa0269780:CDS | 55.0% |
| AGAGCTCTTGGAGCTAGGAG+TGG | + | chr2_3:802810-802829 | Msa0269780:CDS | 55.0% | |
| CTCAGCAGCATCACAGAGAC+TGG | - | chr2_3:803098-803117 | None:intergenic | 55.0% | |
| CCCTTCCTATACGCGGTGGT+AGG | - | chr2_3:797078-797097 | None:intergenic | 60.0% | |
| ATGGCCCTTCCTATACGCGG+TGG | - | chr2_3:797082-797101 | None:intergenic | 60.0% | |
| ! | GTGTGGCAGGTTGGGTTTGG+TGG | + | chr2_3:797605-797624 | Msa0269780:intron | 60.0% |
| !! | CAGGTTGGGTTTGGTGGCGT+TGG | + | chr2_3:797611-797630 | Msa0269780:intron | 60.0% |
| CTATTGGGCCACCTGCCATC+AGG | + | chr2_3:799384-799403 | Msa0269780:intron | 60.0% | |
| GGAGCTAGAAGCTGAGGGTG+TGG | + | chr2_3:799858-799877 | Msa0269780:CDS | 60.0% | |
| CATGCCAACCTGCGTTGCCT+CGG | + | chr2_3:801480-801499 | Msa0269780:CDS | 60.0% | |
| ! | CGAGGCAACGCAGGTTGGCA+TGG | - | chr2_3:801482-801501 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 797019 | 803344 | 797019 | ID=Msa0269780;Name=Msa0269780 |
| chr2_3 | mRNA | 797019 | 803344 | 797019 | ID=Msa0269780-mRNA-1;Parent=Msa0269780;Name=Msa0269780-mRNA-1;_AED=0.29;_eAED=0.29;_QI=374|0.91|0.92|1|0.91|0.84|13|466|368 |
| chr2_3 | exon | 797019 | 797345 | 797019 | ID=Msa0269780-mRNA-1:exon:418;Parent=Msa0269780-mRNA-1 |
| chr2_3 | exon | 797431 | 797522 | 797431 | ID=Msa0269780-mRNA-1:exon:419;Parent=Msa0269780-mRNA-1 |
| chr2_3 | exon | 797614 | 797703 | 797614 | ID=Msa0269780-mRNA-1:exon:420;Parent=Msa0269780-mRNA-1 |
| chr2_3 | exon | 799662 | 799739 | 799662 | ID=Msa0269780-mRNA-1:exon:421;Parent=Msa0269780-mRNA-1 |
| chr2_3 | exon | 799823 | 799897 | 799823 | ID=Msa0269780-mRNA-1:exon:422;Parent=Msa0269780-mRNA-1 |
| chr2_3 | exon | 800144 | 800196 | 800144 | ID=Msa0269780-mRNA-1:exon:423;Parent=Msa0269780-mRNA-1 |
| chr2_3 | exon | 800534 | 800684 | 800534 | ID=Msa0269780-mRNA-1:exon:424;Parent=Msa0269780-mRNA-1 |
| chr2_3 | exon | 800941 | 801051 | 800941 | ID=Msa0269780-mRNA-1:exon:425;Parent=Msa0269780-mRNA-1 |
| chr2_3 | exon | 801168 | 801294 | 801168 | ID=Msa0269780-mRNA-1:exon:426;Parent=Msa0269780-mRNA-1 |
| chr2_3 | exon | 801401 | 801501 | 801401 | ID=Msa0269780-mRNA-1:exon:427;Parent=Msa0269780-mRNA-1 |
| chr2_3 | exon | 802032 | 802170 | 802032 | ID=Msa0269780-mRNA-1:exon:428;Parent=Msa0269780-mRNA-1 |
| chr2_3 | exon | 802446 | 802498 | 802446 | ID=Msa0269780-mRNA-1:exon:429;Parent=Msa0269780-mRNA-1 |
| chr2_3 | exon | 802795 | 803344 | 802795 | ID=Msa0269780-mRNA-1:exon:430;Parent=Msa0269780-mRNA-1 |
| chr2_3 | five_prime_UTR | 797019 | 797345 | 797019 | ID=Msa0269780-mRNA-1:five_prime_utr;Parent=Msa0269780-mRNA-1 |
| chr2_3 | five_prime_UTR | 797431 | 797477 | 797431 | ID=Msa0269780-mRNA-1:five_prime_utr;Parent=Msa0269780-mRNA-1 |
| chr2_3 | CDS | 797478 | 797522 | 797478 | ID=Msa0269780-mRNA-1:cds;Parent=Msa0269780-mRNA-1 |
| chr2_3 | CDS | 797614 | 797703 | 797614 | ID=Msa0269780-mRNA-1:cds;Parent=Msa0269780-mRNA-1 |
| chr2_3 | CDS | 799662 | 799739 | 799662 | ID=Msa0269780-mRNA-1:cds;Parent=Msa0269780-mRNA-1 |
| chr2_3 | CDS | 799823 | 799897 | 799823 | ID=Msa0269780-mRNA-1:cds;Parent=Msa0269780-mRNA-1 |
| chr2_3 | CDS | 800144 | 800196 | 800144 | ID=Msa0269780-mRNA-1:cds;Parent=Msa0269780-mRNA-1 |
| chr2_3 | CDS | 800534 | 800684 | 800534 | ID=Msa0269780-mRNA-1:cds;Parent=Msa0269780-mRNA-1 |
| chr2_3 | CDS | 800941 | 801051 | 800941 | ID=Msa0269780-mRNA-1:cds;Parent=Msa0269780-mRNA-1 |
| chr2_3 | CDS | 801168 | 801294 | 801168 | ID=Msa0269780-mRNA-1:cds;Parent=Msa0269780-mRNA-1 |
| chr2_3 | CDS | 801401 | 801501 | 801401 | ID=Msa0269780-mRNA-1:cds;Parent=Msa0269780-mRNA-1 |
| chr2_3 | CDS | 802032 | 802170 | 802032 | ID=Msa0269780-mRNA-1:cds;Parent=Msa0269780-mRNA-1 |
| chr2_3 | CDS | 802446 | 802498 | 802446 | ID=Msa0269780-mRNA-1:cds;Parent=Msa0269780-mRNA-1 |
| chr2_3 | CDS | 802795 | 802878 | 802795 | ID=Msa0269780-mRNA-1:cds;Parent=Msa0269780-mRNA-1 |
| chr2_3 | three_prime_UTR | 802879 | 803344 | 802879 | ID=Msa0269780-mRNA-1:three_prime_utr;Parent=Msa0269780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
