Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077350 | XP_003590793.2 | 93.252 | 489 | 13 | 2 | 1 | 489 | 1 | 469 | 0.0 | 917 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077350 | sp|Q8VXY9|UAH_ARATH | 76.433 | 471 | 82 | 6 | 26 | 488 | 26 | 475 | 0.0 | 693 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077350 | G7I3Z0 | 93.252 | 489 | 13 | 2 | 1 | 489 | 1 | 469 | 0.0 | 917 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033050 | Msa0077350 | 0.808719 | 2.697246e-50 | -8.615850e-47 |
| Msa0077350 | Msa0303950 | 0.803578 | 3.261218e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077350 | MtrunA17_Chr1g0187131 | 93.252 | 489 | 13 | 2 | 1 | 489 | 1 | 469 | 0.0 | 917 |
| Msa0077350 | MtrunA17_Chr2g0296941 | 31.358 | 405 | 249 | 6 | 70 | 448 | 56 | 457 | 3.74e-48 | 172 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077350 | AT5G43600.1 | 76.433 | 471 | 82 | 6 | 26 | 488 | 26 | 475 | 0.0 | 693 |
| Msa0077350 | AT4G20070.1 | 31.863 | 408 | 249 | 6 | 67 | 448 | 99 | 503 | 1.67e-50 | 180 |
| Msa0077350 | AT4G20070.2 | 34.014 | 294 | 172 | 4 | 67 | 341 | 99 | 389 | 7.41e-37 | 141 |
Find 120 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATCATGACTCTTTGTTTA+TGG | 0.075402 | 1_2:-54237939 | Msa0077350:CDS |
| TGCTTTGTGCAGCCGCTTAT+TGG | 0.159998 | 1_2:-54239203 | Msa0077350:intron |
| ACCCTCCACGTTAGACAAAA+AGG | 0.229110 | 1_2:+54236936 | None:intergenic |
| GATGCTGTTGGTAACATATT+TGG | 0.239325 | 1_2:-54240208 | Msa0077350:CDS |
| GAGAAACACGTCTTGGAATC+TGG | 0.290253 | 1_2:-54238552 | Msa0077350:CDS |
| TTGCAGCTCCTGCAAGTCTA+AGG | 0.299708 | 1_2:-54238880 | Msa0077350:CDS |
| AATTCAACCCTTAGACTTGC+AGG | 0.301726 | 1_2:+54238872 | None:intergenic |
| AGCAAATCGCACATAGAAAT+TGG | 0.316482 | 1_2:-54238392 | Msa0077350:intron |
| ATACTACTGAAGGGACAATT+TGG | 0.336534 | 1_2:+54237060 | None:intergenic |
| TTTATACTAGCAAACTCTTC+AGG | 0.337867 | 1_2:+54237124 | None:intergenic |
| TTTATACTAGCAAACTCTTC+AGG | 0.337867 | 1_2:+54237450 | None:intergenic |
| TTGTGCAGCCGCTTATTGGC+TGG | 0.339371 | 1_2:-54239199 | Msa0077350:intron |
| CATAGAACAAGGGCCTATTC+TGG | 0.341073 | 1_2:-54239020 | Msa0077350:CDS |
| TAGCAAACTCTTCAGGCTTA+TGG | 0.358386 | 1_2:+54237131 | None:intergenic |
| TAGCAAACTCTTCAGGCTTA+TGG | 0.358386 | 1_2:+54237457 | None:intergenic |
| TTGCTCCAGGATGCAGTTGC+AGG | 0.363852 | 1_2:+54238429 | None:intergenic |
| AGGATATATTAACACCCTTA+TGG | 0.366138 | 1_2:+54236835 | None:intergenic |
| CATCGATGCTATACCTTACT+CGG | 0.387674 | 1_2:-54239966 | Msa0077350:CDS |
| GGAAAATATGATGGAGTTGT+TGG | 0.392292 | 1_2:-54239944 | Msa0077350:CDS |
| GGGCTTGCTGCAGTTGCAAC+AGG | 0.394043 | 1_2:-54239995 | Msa0077350:CDS |
| TTAGATGCTGCAAGGTCTGC+TGG | 0.401111 | 1_2:-54239118 | Msa0077350:CDS |
| GAAAATATGATGGAGTTGTT+GGG | 0.402681 | 1_2:-54239943 | Msa0077350:CDS |
| TGTTGCAACTGCAGCAAGCC+CGG | 0.407600 | 1_2:+54239997 | None:intergenic |
| TGACGACTGCTTCATCAGAT+AGG | 0.407970 | 1_2:+54238023 | None:intergenic |
| TTGCAGAGTCTGAGCATCAT+AGG | 0.413088 | 1_2:+54241033 | None:intergenic |
| GTGCCGTCCTTATGCCTAAC+AGG | 0.420469 | 1_2:-54238826 | Msa0077350:intron |
| TCGGAAGAACCCACACGCTT+TGG | 0.420823 | 1_2:-54239317 | Msa0077350:CDS |
| CATCTAAGAAGGATACGTTT+TGG | 0.421925 | 1_2:+54239134 | None:intergenic |
| AGACGTGTTTCTCAACTGTC+AGG | 0.430758 | 1_2:+54238562 | None:intergenic |
| CGCTTTGGAATAAGTTGCTT+AGG | 0.436892 | 1_2:-54239302 | Msa0077350:CDS |
| AAAGATAGCAGCCACCTGTT+AGG | 0.437842 | 1_2:+54238812 | None:intergenic |
| TGTGCAGCCGCTTATTGGCT+GGG | 0.439185 | 1_2:-54239198 | Msa0077350:intron |
| AAGCCATCAATGTATTGAAA+AGG | 0.441848 | 1_2:-54239904 | Msa0077350:intron |
| TGAGTTTCATATCATCAATC+AGG | 0.445316 | 1_2:-54238056 | Msa0077350:CDS |
| AATCTATGTATATAACCATA+AGG | 0.449707 | 1_2:-54236850 | Msa0077350:three_prime_UTR |
| ATTTCTATGTGCGATTTGCT+AGG | 0.453162 | 1_2:+54238395 | None:intergenic |
| CTCAGTGAGCTTGACACCTC+GGG | 0.455549 | 1_2:+54238075 | None:intergenic |
| GGGTTCAAGAATTGAGTAAC+CGG | 0.464660 | 1_2:+54241075 | None:intergenic |
| AGAAACACGTCTTGGAATCT+GGG | 0.466268 | 1_2:-54238551 | Msa0077350:CDS |
| GTCAAATGGTGTAAAAGTAT+TGG | 0.471269 | 1_2:-54237095 | Msa0077350:CDS |
| ATGACTCTTTGTTTATGGCC+AGG | 0.475673 | 1_2:-54237934 | Msa0077350:intron |
| ATCTATGTATATAACCATAA+GGG | 0.476258 | 1_2:-54236849 | Msa0077350:three_prime_UTR |
| TGTTAATATATCCTTGTAGT+TGG | 0.476576 | 1_2:-54236826 | Msa0077350:three_prime_UTR |
| TGTAGGGATGGCAGTGAACC+CGG | 0.479777 | 1_2:-54240016 | Msa0077350:intron |
| TCCATGGTTGAGATGATTGA+AGG | 0.484068 | 1_2:+54241106 | None:intergenic |
| GAGCAGAAATGATGCTGGTC+TGG | 0.485198 | 1_2:-54238601 | Msa0077350:intron |
| AGTATAAAAGATATGTCAAA+TGG | 0.486176 | 1_2:-54237109 | Msa0077350:CDS |
| AGTATAAAAGATATGTCAAA+TGG | 0.486176 | 1_2:-54237435 | Msa0077350:intron |
| CTCGACTCAGGTATATCTAT+AGG | 0.486261 | 1_2:-54238917 | Msa0077350:intron |
| GTACCTTCGTCCTCCAGAAT+AGG | 0.486813 | 1_2:+54239007 | None:intergenic |
| GGTATCCTGCAACTGCATCC+TGG | 0.493387 | 1_2:-54238434 | Msa0077350:CDS |
| CACCTGCTCCATCAGTAACC+AGG | 0.493616 | 1_2:-54240892 | Msa0077350:CDS |
| AGTCTAAGGGTTGAATTTGA+AGG | 0.495118 | 1_2:-54238866 | Msa0077350:CDS |
| TTGGTAACATATTTGGTCGT+TGG | 0.498780 | 1_2:-54240201 | Msa0077350:intron |
| CATAAACAAAGAGTCATGAT+AGG | 0.503371 | 1_2:+54237940 | None:intergenic |
| TTTCTATGTGCGATTTGCTA+GGG | 0.507359 | 1_2:+54238396 | None:intergenic |
| CCTTACTCGGGAAAATATGA+TGG | 0.509108 | 1_2:-54239953 | Msa0077350:CDS |
| GTTGCAACTGCAGCAAGCCC+GGG | 0.512122 | 1_2:+54239998 | None:intergenic |
| TAATTGCAGGGTGTCTCCAA+TGG | 0.515169 | 1_2:-54237813 | Msa0077350:intron |
| TTTCAAACCTAAAAGATCGT+TGG | 0.519496 | 1_2:-54239357 | Msa0077350:CDS |
| GCAGCCACCTGTTAGGCATA+AGG | 0.521384 | 1_2:+54238819 | None:intergenic |
| AGACCTTGCAGCATCTAAGA+AGG | 0.530450 | 1_2:+54239123 | None:intergenic |
| GAAGGCAATGGTGGCCATGC+AGG | 0.531611 | 1_2:-54238848 | Msa0077350:CDS |
| GGGATGCTATTGATTGCTCC+AGG | 0.535136 | 1_2:+54238416 | None:intergenic |
| GACGACTGCTTCATCAGATA+GGG | 0.539801 | 1_2:+54238024 | None:intergenic |
| CAGTAAATACCTTTGTAACA+TGG | 0.542692 | 1_2:+54237776 | None:intergenic |
| AGGGTTGAATTTGAAGGCAA+TGG | 0.544238 | 1_2:-54238860 | Msa0077350:CDS |
| AATTGCAGGGTGTCTCCAAT+GGG | 0.545945 | 1_2:-54237812 | Msa0077350:intron |
| GTTGATACCGTTGGCACTGT+TGG | 0.548107 | 1_2:-54238525 | Msa0077350:intron |
| AAAATATGATGGAGTTGTTG+GGG | 0.552492 | 1_2:-54239942 | Msa0077350:CDS |
| GATAGTGAAGAGAATGAAGT+GGG | 0.554819 | 1_2:+54241055 | None:intergenic |
| TTGGAATAAGTTGCTTAGGA+AGG | 0.556520 | 1_2:-54239298 | Msa0077350:intron |
| GACAGTTGAGAAACACGTCT+TGG | 0.557732 | 1_2:-54238559 | Msa0077350:CDS |
| TAGACTTGCAGGAGCTGCAA+TGG | 0.558242 | 1_2:+54238883 | None:intergenic |
| ACTCAGTGAGCTTGACACCT+CGG | 0.561616 | 1_2:+54238074 | None:intergenic |
| GTAACCGGAAAATTGTTCCA+TGG | 0.564773 | 1_2:+54241090 | None:intergenic |
| TGCAGCTCCTGCAAGTCTAA+GGG | 0.569479 | 1_2:-54238879 | Msa0077350:CDS |
| TGCTGGTCTATCTGTAAGAG+AGG | 0.570001 | 1_2:-54240230 | Msa0077350:CDS |
| GCAACTTATTCCAAAGCGTG+TGG | 0.571770 | 1_2:+54239307 | None:intergenic |
| TGCTCAGACTCTGCAAAACC+AGG | 0.574111 | 1_2:-54241026 | Msa0077350:intron |
| TCTGGGTCTGTTGATACCGT+TGG | 0.574941 | 1_2:-54238534 | Msa0077350:CDS |
| GTAGAATTGCACATAGAACA+AGG | 0.577230 | 1_2:-54239031 | Msa0077350:CDS |
| TCTGTAAGAGAGGATGCTGT+TGG | 0.578585 | 1_2:-54240220 | Msa0077350:CDS |
| TACAAAACCCTGGTTACTGA+TGG | 0.580980 | 1_2:+54240884 | None:intergenic |
| ATGTTGATGAGATGAAATTG+AGG | 0.581724 | 1_2:+54241147 | None:intergenic |
| GGAAGTCATATTATTTACAT+CGG | 0.582332 | 1_2:-54239336 | Msa0077350:CDS |
| CTGAAGGGACAATTTGGCTA+AGG | 0.584714 | 1_2:+54237066 | None:intergenic |
| GGATAGTGAAGAGAATGAAG+TGG | 0.584744 | 1_2:+54241054 | None:intergenic |
| GGAATGAAAATCATGCCCAT+TGG | 0.585366 | 1_2:+54237797 | None:intergenic |
| TATCATCAATCAGGATCCAC+CGG | 0.585926 | 1_2:-54238047 | Msa0077350:CDS |
| GTTGAATTTGAAGGCAATGG+TGG | 0.588343 | 1_2:-54238857 | Msa0077350:CDS |
| TTGACTATCATTGCAGAACA+AGG | 0.591237 | 1_2:-54237019 | Msa0077350:three_prime_UTR |
| GTAGGGATGGCAGTGAACCC+GGG | 0.597353 | 1_2:-54240015 | Msa0077350:intron |
| GCATAAGGACGGCACCTGCA+TGG | 0.597367 | 1_2:+54238834 | None:intergenic |
| ACATGGAGCAGAAATGATGC+TGG | 0.599655 | 1_2:-54238606 | Msa0077350:intron |
| CCCTTCAATCATCTCAACCA+TGG | 0.607191 | 1_2:-54241107 | Msa0077350:CDS |
| AACTGTCAGGGCTAATTCAG+CGG | 0.609512 | 1_2:+54238575 | None:intergenic |
| ATTACATAAGATACTACTGA+AGG | 0.610162 | 1_2:+54237050 | None:intergenic |
| TCTCACTCCCAGCCAATAAG+CGG | 0.612263 | 1_2:+54239191 | None:intergenic |
| ATACACAGTGGCCAACTACA+AGG | 0.614741 | 1_2:+54236815 | None:intergenic |
| CAACTTATTCCAAAGCGTGT+GGG | 0.616426 | 1_2:+54239308 | None:intergenic |
| TAACTTACCAACAGTGCCAA+CGG | 0.618887 | 1_2:+54238518 | None:intergenic |
| ATCGATGCTATACCTTACTC+GGG | 0.621735 | 1_2:-54239965 | Msa0077350:CDS |
| ACCCTGGTTACTGATGGAGC+AGG | 0.622503 | 1_2:+54240890 | None:intergenic |
| ACTGCTTCATCAGATAGGGC+CGG | 0.627902 | 1_2:+54238028 | None:intergenic |
| CTTATCAGTGTACAAAACCC+TGG | 0.630224 | 1_2:+54240874 | None:intergenic |
| GACGTGTTTCTCAACTGTCA+GGG | 0.631427 | 1_2:+54238563 | None:intergenic |
| CCATGGTTGAGATGATTGAA+GGG | 0.636449 | 1_2:+54241107 | None:intergenic |
| TGAAGCAGTCGTCAATGCAG+TGG | 0.637131 | 1_2:-54238014 | Msa0077350:CDS |
| GCTTCATCAGATAGGGCCGG+TGG | 0.641389 | 1_2:+54238031 | None:intergenic |
| ACCTGCTCCATCAGTAACCA+GGG | 0.647638 | 1_2:-54240891 | Msa0077350:CDS |
| TATCCTTCTTAGATGCTGCA+AGG | 0.652589 | 1_2:-54239126 | Msa0077350:CDS |
| TTACATAAGATACTACTGAA+GGG | 0.657232 | 1_2:+54237051 | None:intergenic |
| CCACCTGTTAGGCATAAGGA+CGG | 0.675285 | 1_2:+54238823 | None:intergenic |
| TAGAATTGCACATAGAACAA+GGG | 0.675382 | 1_2:-54239030 | Msa0077350:CDS |
| AGATACTAGAGACATTGATG+AGG | 0.686727 | 1_2:-54238155 | Msa0077350:CDS |
| AGAACAAGGGCCTATTCTGG+AGG | 0.689732 | 1_2:-54239017 | Msa0077350:CDS |
| ATTAGAATAACTAAAACCCG+AGG | 0.693337 | 1_2:-54238091 | Msa0077350:CDS |
| GGGCCTATTCTGGAGGACGA+AGG | 0.703853 | 1_2:-54239010 | Msa0077350:intron |
| CACTGTTGATGAGTAGCGAG+TGG | 0.710879 | 1_2:-54241278 | Msa0077350:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTACATATAAGTAATTATA+AGG | + | chr1_2:54238625-54238644 | None:intergenic | 10.0% |
| !! | ATAGATATTTAATATGTAAT+TGG | - | chr1_2:54239910-54239929 | Msa0077350:CDS | 10.0% |
| !!! | AAAAAATCCTTTTATTTTGT+TGG | - | chr1_2:54237120-54237139 | Msa0077350:CDS | 15.0% |
| !!! | TTTTTGGATATTTTTTTAGT+TGG | - | chr1_2:54237315-54237334 | Msa0077350:intron | 15.0% |
| !! | TTGTGTATGATTATAAAATT+AGG | - | chr1_2:54237591-54237610 | Msa0077350:intron | 15.0% |
| !!! | TGAGAATTTTAAATTCAAAA+AGG | + | chr1_2:54239436-54239455 | None:intergenic | 15.0% |
| !!! | AGTATTATTTTTAAATCACA+TGG | - | chr1_2:54239478-54239497 | Msa0077350:intron | 15.0% |
| !!! | AAATAAATTGTTTTGAATGA+AGG | + | chr1_2:54239642-54239661 | None:intergenic | 15.0% |
| !!! | TCAAAACAATTTATTTTACA+AGG | - | chr1_2:54239646-54239665 | Msa0077350:intron | 15.0% |
| !! | TGAAAAAAATAAACAACTAT+TGG | + | chr1_2:54239806-54239825 | None:intergenic | 15.0% |
| !! | TCAAAAACCAACAAAATAAA+AGG | + | chr1_2:54237130-54237149 | None:intergenic | 20.0% |
| !!! | CTATATAAAGTTTCAGTTTT+TGG | - | chr1_2:54237299-54237318 | Msa0077350:intron | 20.0% |
| !! | AACAAGAGTAAAGTTTATAA+AGG | + | chr1_2:54237815-54237834 | None:intergenic | 20.0% |
| !!! | TTTGTTATTATTGCTGATAT+AGG | - | chr1_2:54238228-54238247 | Msa0077350:intron | 20.0% |
| !! | AATTATTTCAAAGGAAGAAT+TGG | - | chr1_2:54238378-54238397 | Msa0077350:intron | 20.0% |
| !! | ATTATTTCAAAGGAAGAATT+GGG | - | chr1_2:54238379-54238398 | Msa0077350:intron | 20.0% |
| !! | TGGTTTAAACAATTATATGT+TGG | + | chr1_2:54238520-54238539 | None:intergenic | 20.0% |
| !! | TTGAAACTTAAAGTAGAATA+TGG | + | chr1_2:54238871-54238890 | None:intergenic | 20.0% |
| !!! | TCTTCATATTTTTAAGCAAA+AGG | - | chr1_2:54239346-54239365 | Msa0077350:CDS | 20.0% |
| !! | AAAAATAAACAACTATTGGA+TGG | + | chr1_2:54239802-54239821 | None:intergenic | 20.0% |
| !!! | TTAAAATGTTTTAACTTAGC+AGG | - | chr1_2:54240208-54240227 | Msa0077350:CDS | 20.0% |
| !! | AGTATAAAAGATATGTCAAA+TGG | - | chr1_2:54240666-54240685 | Msa0077350:intron | 20.0% |
| !! | AGTATAAAAGATATGTCAAA+TGG | - | chr1_2:54240666-54240685 | Msa0077350:intron | 20.0% |
| !! | AATCTATGTATATAACCATA+AGG | - | chr1_2:54241251-54241270 | Msa0077350:five_prime_UTR | 20.0% |
| !! | ATCTATGTATATAACCATAA+GGG | - | chr1_2:54241252-54241271 | Msa0077350:five_prime_UTR | 20.0% |
| ! | TCATCTTCTCAAATTATTAC+CGG | + | chr1_2:54237401-54237420 | None:intergenic | 25.0% |
| ! | TGATTCAAAGGTGAATTTAA+TGG | - | chr1_2:54237663-54237682 | Msa0077350:intron | 25.0% |
| ! | TAGGTATGTTAAAAATCTCA+TGG | - | chr1_2:54237844-54237863 | Msa0077350:intron | 25.0% |
| ! | AGGTATGTTAAAAATCTCAT+GGG | - | chr1_2:54237845-54237864 | Msa0077350:intron | 25.0% |
| !! | AAACCTTTTCAATACATTGA+TGG | + | chr1_2:54238203-54238222 | None:intergenic | 25.0% |
| ! | TATTATAACGAGATACATAC+AGG | + | chr1_2:54238445-54238464 | None:intergenic | 25.0% |
| !! | AATACTTTTGTTCAACAATG+TGG | - | chr1_2:54238571-54238590 | Msa0077350:CDS | 25.0% |
| ! | TATAAGGAAATAGTTACTTG+TGG | + | chr1_2:54238609-54238628 | None:intergenic | 25.0% |
| !!! | TAAATCACATCTTTGGAATT+TGG | + | chr1_2:54238653-54238672 | None:intergenic | 25.0% |
| ! | GGAAGTCATATTATTTACAT+CGG | - | chr1_2:54238765-54238784 | Msa0077350:intron | 25.0% |
| ! | TTAGTCAATCAAAGTAACAA+TGG | + | chr1_2:54238840-54238859 | None:intergenic | 25.0% |
| !!! | TCGAGTGTATTTTTAAACAA+AGG | - | chr1_2:54239031-54239050 | Msa0077350:CDS | 25.0% |
| ! | GTGTTTAAATACAAGTAGTT+TGG | - | chr1_2:54239776-54239795 | Msa0077350:intron | 25.0% |
| ! | AAGTATATTATACTTGCAAC+TGG | + | chr1_2:54239876-54239895 | None:intergenic | 25.0% |
| ! | AGTTGCAAGTATAATATACT+TGG | - | chr1_2:54239875-54239894 | Msa0077350:intron | 25.0% |
| !!! | CGTGAATTTTTTCAATAACT+TGG | + | chr1_2:54239982-54240001 | None:intergenic | 25.0% |
| !! | ATTTTCATTCCATGTTACAA+AGG | - | chr1_2:54240316-54240335 | Msa0077350:intron | 25.0% |
| !! | TTGTTGATTGCAAAAACAAT+TGG | + | chr1_2:54240393-54240412 | None:intergenic | 25.0% |
| ! | TTACATAAGATACTACTGAA+GGG | + | chr1_2:54240727-54240746 | None:intergenic | 25.0% |
| ! | ATTACATAAGATACTACTGA+AGG | + | chr1_2:54240728-54240747 | None:intergenic | 25.0% |
| ! | TTACATAAGATACTACTGAA+GGG | + | chr1_2:54240727-54240746 | None:intergenic | 25.0% |
| ! | ATTACATAAGATACTACTGA+AGG | + | chr1_2:54240728-54240747 | None:intergenic | 25.0% |
| !!! | CCTCTAAAAATGTTCTTTTT+AGG | + | chr1_2:54241220-54241239 | None:intergenic | 25.0% |
| !!! | CCTAAAAAGAACATTTTTAG+AGG | - | chr1_2:54241217-54241236 | Msa0077350:exon | 25.0% |
| ! | TGTTAATATATCCTTGTAGT+TGG | - | chr1_2:54241275-54241294 | Msa0077350:five_prime_UTR | 25.0% |
| AACAGAACAACCTCAAAAAA+TGG | - | chr1_2:54236877-54236896 | Msa0077350:three_prime_UTR | 30.0% | |
| !!! | TAGTGATGAACCATTTTTTG+AGG | + | chr1_2:54236890-54236909 | None:intergenic | 30.0% |
| ! | ATGTTGATGAGATGAAATTG+AGG | + | chr1_2:54236957-54236976 | None:intergenic | 30.0% |
| !!! | GGATATTTTTTTAGTTGGCT+TGG | - | chr1_2:54237320-54237339 | Msa0077350:intron | 30.0% |
| GTAATCAGTATCACATATGT+CGG | - | chr1_2:54237432-54237451 | Msa0077350:intron | 30.0% | |
| GTGAATTTAATGGTGCAAAA+AGG | - | chr1_2:54237673-54237692 | Msa0077350:intron | 30.0% | |
| ! | CAATCAACTTATCATTGACT+CGG | - | chr1_2:54237965-54237984 | Msa0077350:CDS | 30.0% |
| ! | TATATAGCTTTACCTTTGCT+TGG | - | chr1_2:54238058-54238077 | Msa0077350:CDS | 30.0% |
| ! | GAAAATATGATGGAGTTGTT+GGG | - | chr1_2:54238158-54238177 | Msa0077350:intron | 30.0% |
| ! | AAAATATGATGGAGTTGTTG+GGG | - | chr1_2:54238159-54238178 | Msa0077350:intron | 30.0% |
| AAGCCATCAATGTATTGAAA+AGG | - | chr1_2:54238197-54238216 | Msa0077350:intron | 30.0% | |
| !!! | CAGGTTTTTTCATTTTCACT+TGG | + | chr1_2:54238426-54238445 | None:intergenic | 30.0% |
| GTATTGCATCGTTCATAAAA+TGG | + | chr1_2:54238540-54238559 | None:intergenic | 30.0% | |
| ATCTGTGTAAATCACATCTT+TGG | + | chr1_2:54238660-54238679 | None:intergenic | 30.0% | |
| TTTCAAACCTAAAAGATCGT+TGG | - | chr1_2:54238744-54238763 | Msa0077350:intron | 30.0% | |
| TAGAATTGCACATAGAACAA+GGG | - | chr1_2:54239071-54239090 | Msa0077350:CDS | 30.0% | |
| GAAATATTAGTCAGTAGAGA+GGG | + | chr1_2:54239854-54239873 | None:intergenic | 30.0% | |
| ATTAGAATAACTAAAACCCG+AGG | - | chr1_2:54240010-54240029 | Msa0077350:CDS | 30.0% | |
| TGAGTTTCATATCATCAATC+AGG | - | chr1_2:54240045-54240064 | Msa0077350:intron | 30.0% | |
| CATAAACAAAGAGTCATGAT+AGG | + | chr1_2:54240164-54240183 | None:intergenic | 30.0% | |
| ! | CTATCATGACTCTTTGTTTA+TGG | - | chr1_2:54240162-54240181 | Msa0077350:intron | 30.0% |
| ATGTACGTTATGTAATTGCA+GGG | - | chr1_2:54240276-54240295 | Msa0077350:intron | 30.0% | |
| CAGTAAATACCTTTGTAACA+TGG | + | chr1_2:54240328-54240347 | None:intergenic | 30.0% | |
| GTTGAATGTAATAACATGTG+CGG | + | chr1_2:54240452-54240471 | None:intergenic | 30.0% | |
| AGTGTTAGATAGAGTTGAAT+AGG | - | chr1_2:54240531-54240550 | Msa0077350:intron | 30.0% | |
| TTTATACTAGCAAACTCTTC+AGG | + | chr1_2:54240654-54240673 | None:intergenic | 30.0% | |
| ! | GTCAAATGGTGTAAAAGTAT+TGG | - | chr1_2:54240680-54240699 | Msa0077350:intron | 30.0% |
| AGTGTTAGATAGAGTTGAAT+AGG | - | chr1_2:54240531-54240550 | Msa0077350:intron | 30.0% | |
| TTTATACTAGCAAACTCTTC+AGG | + | chr1_2:54240654-54240673 | None:intergenic | 30.0% | |
| ! | GTCAAATGGTGTAAAAGTAT+TGG | - | chr1_2:54240680-54240699 | Msa0077350:intron | 30.0% |
| ! | GGCACATTTTTCACATTATA+TGG | + | chr1_2:54241199-54241218 | None:intergenic | 30.0% |
| AGGATATATTAACACCCTTA+TGG | + | chr1_2:54241269-54241288 | None:intergenic | 30.0% | |
| ! | TCAACCATGGAACAATTTTC+CGG | - | chr1_2:54237007-54237026 | Msa0077350:three_prime_UTR | 35.0% |
| GATAGTGAAGAGAATGAAGT+GGG | + | chr1_2:54237049-54237068 | None:intergenic | 35.0% | |
| !!! | ATAAGGATGTTTTAGCTCGA+AGG | - | chr1_2:54237245-54237264 | Msa0077350:intron | 35.0% |
| AAGTGTGTACCTATGAAGTA+CGG | - | chr1_2:54237353-54237372 | Msa0077350:intron | 35.0% | |
| ! | CTTCTAATAGAAAGTGTGTC+TGG | + | chr1_2:54237483-54237502 | None:intergenic | 35.0% |
| TAGTCTATTCAAGAACTACC+TGG | + | chr1_2:54237558-54237577 | None:intergenic | 35.0% | |
| !! | ATAGTACTTCGCTGATTCAA+AGG | - | chr1_2:54237651-54237670 | Msa0077350:intron | 35.0% |
| GGTAAACATCTCACATTCTA+AGG | + | chr1_2:54237794-54237813 | None:intergenic | 35.0% | |
| !!! | TACTCTTGTTTTGCATCTGT+AGG | - | chr1_2:54237825-54237844 | Msa0077350:intron | 35.0% |
| AAAAATCTCATGGGAATTGC+TGG | - | chr1_2:54237854-54237873 | Msa0077350:intron | 35.0% | |
| !! | GATGCTGTTGGTAACATATT+TGG | - | chr1_2:54237893-54237912 | Msa0077350:intron | 35.0% |
| ! | TTGGTAACATATTTGGTCGT+TGG | - | chr1_2:54237900-54237919 | Msa0077350:intron | 35.0% |
| !! | CGAGTCAATGATAAGTTGAT+TGG | + | chr1_2:54237967-54237986 | None:intergenic | 35.0% |
| AATCTTCCCTCTATTAGCTA+CGG | - | chr1_2:54238012-54238031 | Msa0077350:CDS | 35.0% | |
| TACCTTTGCTTGGTTTATGT+AGG | - | chr1_2:54238068-54238087 | Msa0077350:CDS | 35.0% | |
| ACCTTTGCTTGGTTTATGTA+GGG | - | chr1_2:54238069-54238088 | Msa0077350:CDS | 35.0% | |
| ! | GGAAAATATGATGGAGTTGT+TGG | - | chr1_2:54238157-54238176 | Msa0077350:intron | 35.0% |
| CAGCATCTTGAATCTTACTA+CGG | - | chr1_2:54238326-54238345 | Msa0077350:intron | 35.0% | |
| CTCGCTGCAAATTATTTCAA+AGG | - | chr1_2:54238369-54238388 | Msa0077350:intron | 35.0% | |
| AGATCAATCATTACCCACTT+AGG | - | chr1_2:54238676-54238695 | Msa0077350:intron | 35.0% | |
| ! | ATGACTTCCAACGATCTTTT+AGG | + | chr1_2:54238754-54238773 | None:intergenic | 35.0% |
| TTGGAATAAGTTGCTTAGGA+AGG | - | chr1_2:54238803-54238822 | Msa0077350:intron | 35.0% | |
| ! | CATCTAAGAAGGATACGTTT+TGG | + | chr1_2:54238970-54238989 | None:intergenic | 35.0% |
| GTAGAATTGCACATAGAACA+AGG | - | chr1_2:54239070-54239089 | Msa0077350:CDS | 35.0% | |
| AGTCTAAGGGTTGAATTTGA+AGG | - | chr1_2:54239235-54239254 | Msa0077350:intron | 35.0% | |
| GCTCTTGATTAATCAAATCG+AGG | + | chr1_2:54239620-54239639 | None:intergenic | 35.0% | |
| !! | TTTCTATGTGCGATTTGCTA+GGG | + | chr1_2:54239708-54239727 | None:intergenic | 35.0% |
| ! | ATTTCTATGTGCGATTTGCT+AGG | + | chr1_2:54239709-54239728 | None:intergenic | 35.0% |
| AGCAAATCGCACATAGAAAT+TGG | - | chr1_2:54239709-54239728 | Msa0077350:intron | 35.0% | |
| TTAAACACTGTAAGAATGCC+AGG | + | chr1_2:54239764-54239783 | None:intergenic | 35.0% | |
| GGAAATATTAGTCAGTAGAG+AGG | + | chr1_2:54239855-54239874 | None:intergenic | 35.0% | |
| AGATACTAGAGACATTGATG+AGG | - | chr1_2:54239946-54239965 | Msa0077350:CDS | 35.0% | |
| TAGCAGGAAATATTACACAG+TGG | - | chr1_2:54240224-54240243 | Msa0077350:CDS | 35.0% | |
| CATGTACGTTATGTAATTGC+AGG | - | chr1_2:54240275-54240294 | Msa0077350:intron | 35.0% | |
| ATACTACTGAAGGGACAATT+TGG | + | chr1_2:54240718-54240737 | None:intergenic | 35.0% | |
| TTGACTATCATTGCAGAACA+AGG | - | chr1_2:54240756-54240775 | Msa0077350:intron | 35.0% | |
| ATACTACTGAAGGGACAATT+TGG | + | chr1_2:54240718-54240737 | None:intergenic | 35.0% | |
| TTGACTATCATTGCAGAACA+AGG | - | chr1_2:54240756-54240775 | Msa0077350:intron | 35.0% | |
| ! | TATACCCTTTTTGTCTAACG+TGG | - | chr1_2:54241160-54241179 | Msa0077350:CDS | 35.0% |
| CCATGGTTGAGATGATTGAA+GGG | + | chr1_2:54236997-54237016 | None:intergenic | 40.0% | |
| TCCATGGTTGAGATGATTGA+AGG | + | chr1_2:54236998-54237017 | None:intergenic | 40.0% | |
| GTAACCGGAAAATTGTTCCA+TGG | + | chr1_2:54237014-54237033 | None:intergenic | 40.0% | |
| GGGTTCAAGAATTGAGTAAC+CGG | + | chr1_2:54237029-54237048 | None:intergenic | 40.0% | |
| GGATAGTGAAGAGAATGAAG+TGG | + | chr1_2:54237050-54237069 | None:intergenic | 40.0% | |
| ATGATTGAGTGTACTGTACC+TGG | + | chr1_2:54237096-54237115 | None:intergenic | 40.0% | |
| TACAAAACCCTGGTTACTGA+TGG | + | chr1_2:54237220-54237239 | None:intergenic | 40.0% | |
| CTTATCAGTGTACAAAACCC+TGG | + | chr1_2:54237230-54237249 | None:intergenic | 40.0% | |
| !! | CAGGGTTTTGTACACTGATA+AGG | - | chr1_2:54237228-54237247 | Msa0077350:intron | 40.0% |
| CAACACTGACACATTTGTAC+CGG | - | chr1_2:54237379-54237398 | Msa0077350:intron | 40.0% | |
| AGTATCACATATGTCGGTGT+CGG | - | chr1_2:54237438-54237457 | Msa0077350:CDS | 40.0% | |
| AGTACAAGAAGAGTGGCATA+TGG | - | chr1_2:54237511-54237530 | Msa0077350:intron | 40.0% | |
| TGTACAACCACTACAATTCC+AGG | - | chr1_2:54237537-54237556 | Msa0077350:intron | 40.0% | |
| AGAACTACCTGGAATTGTAG+TGG | + | chr1_2:54237547-54237566 | None:intergenic | 40.0% | |
| AATGGTGCAAAAAGGATGTG+CGG | - | chr1_2:54237681-54237700 | Msa0077350:intron | 40.0% | |
| ATTCCTCAAAAGCTCTCTCT+GGG | - | chr1_2:54237932-54237951 | Msa0077350:intron | 40.0% | |
| GCTAAACCGTAGCTAATAGA+GGG | + | chr1_2:54238021-54238040 | None:intergenic | 40.0% | |
| CTCTATTAGCTACGGTTTAG+CGG | - | chr1_2:54238020-54238039 | Msa0077350:CDS | 40.0% | |
| TCCCTACATAAACCAAGCAA+AGG | + | chr1_2:54238073-54238092 | None:intergenic | 40.0% | |
| TTGCTTGGTTTATGTAGGGA+TGG | - | chr1_2:54238073-54238092 | Msa0077350:CDS | 40.0% | |
| CATCGATGCTATACCTTACT+CGG | - | chr1_2:54238135-54238154 | Msa0077350:CDS | 40.0% | |
| ATCGATGCTATACCTTACTC+GGG | - | chr1_2:54238136-54238155 | Msa0077350:CDS | 40.0% | |
| ! | CCATCATATTTTCCCGAGTA+AGG | + | chr1_2:54238151-54238170 | None:intergenic | 40.0% |
| CCTTACTCGGGAAAATATGA+TGG | - | chr1_2:54238148-54238167 | Msa0077350:CDS | 40.0% | |
| CAACTTATTCCAAAGCGTGT+GGG | + | chr1_2:54238796-54238815 | None:intergenic | 40.0% | |
| !! | CGCTTTGGAATAAGTTGCTT+AGG | - | chr1_2:54238799-54238818 | Msa0077350:intron | 40.0% |
| TATCCTTCTTAGATGCTGCA+AGG | - | chr1_2:54238975-54238994 | Msa0077350:intron | 40.0% | |
| CTCGACTCAGGTATATCTAT+AGG | - | chr1_2:54239184-54239203 | Msa0077350:CDS | 40.0% | |
| AATTCAACCCTTAGACTTGC+AGG | + | chr1_2:54239232-54239251 | None:intergenic | 40.0% | |
| AGGGTTGAATTTGAAGGCAA+TGG | - | chr1_2:54239241-54239260 | Msa0077350:intron | 40.0% | |
| GTTGAATTTGAAGGCAATGG+TGG | - | chr1_2:54239244-54239263 | Msa0077350:intron | 40.0% | |
| AGAAACACGTCTTGGAATCT+GGG | - | chr1_2:54239550-54239569 | Msa0077350:intron | 40.0% | |
| TAACTTACCAACAGTGCCAA+CGG | + | chr1_2:54239586-54239605 | None:intergenic | 40.0% | |
| ACGACAATTTGAGTCATACC+TGG | - | chr1_2:54239743-54239762 | Msa0077350:intron | 40.0% | |
| TATCATCAATCAGGATCCAC+CGG | - | chr1_2:54240054-54240073 | Msa0077350:intron | 40.0% | |
| ! | ATGACTCTTTGTTTATGGCC+AGG | - | chr1_2:54240167-54240186 | Msa0077350:intron | 40.0% |
| CTTATCTTCCTGCAAATACC+TGG | + | chr1_2:54240188-54240207 | None:intergenic | 40.0% | |
| GGAATGAAAATCATGCCCAT+TGG | + | chr1_2:54240307-54240326 | None:intergenic | 40.0% | |
| CAACTCTATCTAACACTGAC+AGG | + | chr1_2:54240528-54240547 | None:intergenic | 40.0% | |
| TAGCAAACTCTTCAGGCTTA+TGG | + | chr1_2:54240647-54240666 | None:intergenic | 40.0% | |
| CAACTCTATCTAACACTGAC+AGG | + | chr1_2:54240528-54240547 | None:intergenic | 40.0% | |
| TAGCAAACTCTTCAGGCTTA+TGG | + | chr1_2:54240647-54240666 | None:intergenic | 40.0% | |
| CCCTTCAATCATCTCAACCA+TGG | - | chr1_2:54236994-54237013 | Msa0077350:three_prime_UTR | 45.0% | |
| TTGCAGAGTCTGAGCATCAT+AGG | + | chr1_2:54237071-54237090 | None:intergenic | 45.0% | |
| GTGTTGTGTCCGTACTTCAT+AGG | + | chr1_2:54237365-54237384 | None:intergenic | 45.0% | |
| GACAGTGAGTACAAGAAGAG+TGG | - | chr1_2:54237504-54237523 | Msa0077350:intron | 45.0% | |
| ATGGTGCAAAAAGGATGTGC+GGG | - | chr1_2:54237682-54237701 | Msa0077350:intron | 45.0% | |
| ! | TGCTGGTCTATCTGTAAGAG+AGG | - | chr1_2:54237871-54237890 | Msa0077350:intron | 45.0% |
| TCTGTAAGAGAGGATGCTGT+TGG | - | chr1_2:54237881-54237900 | Msa0077350:intron | 45.0% | |
| CATTCCTCAAAAGCTCTCTC+TGG | - | chr1_2:54237931-54237950 | Msa0077350:intron | 45.0% | |
| CGCTAAACCGTAGCTAATAG+AGG | + | chr1_2:54238022-54238041 | None:intergenic | 45.0% | |
| ! | GATGGAGTTGTTGGGGTTTT+AGG | - | chr1_2:54238166-54238185 | Msa0077350:intron | 45.0% |
| GAGACTATCAGAACGGTGAA+AGG | + | chr1_2:54238352-54238371 | None:intergenic | 45.0% | |
| TTGCAGCGAGACTATCAGAA+CGG | + | chr1_2:54238359-54238378 | None:intergenic | 45.0% | |
| ACGTTGCTACTCACCTAAGT+GGG | + | chr1_2:54238692-54238711 | None:intergenic | 45.0% | |
| AACGTTGCTACTCACCTAAG+TGG | + | chr1_2:54238693-54238712 | None:intergenic | 45.0% | |
| CTGTGAAGGCTTAGTCAGTA+TGG | + | chr1_2:54238718-54238737 | None:intergenic | 45.0% | |
| ! | CATACTGACTAAGCCTTCAC+AGG | - | chr1_2:54238716-54238735 | Msa0077350:intron | 45.0% |
| ! | GTTTGAAACCAGACCTGTGA+AGG | + | chr1_2:54238732-54238751 | None:intergenic | 45.0% |
| GCAACTTATTCCAAAGCGTG+TGG | + | chr1_2:54238797-54238816 | None:intergenic | 45.0% | |
| AGACCTTGCAGCATCTAAGA+AGG | + | chr1_2:54238981-54239000 | None:intergenic | 45.0% | |
| CATAGAACAAGGGCCTATTC+TGG | - | chr1_2:54239081-54239100 | Msa0077350:CDS | 45.0% | |
| ! | CGTCATTTGTTTCTCGACTC+AGG | - | chr1_2:54239172-54239191 | Msa0077350:CDS | 45.0% |
| AAAGATAGCAGCCACCTGTT+AGG | + | chr1_2:54239292-54239311 | None:intergenic | 45.0% | |
| ACATGGAGCAGAAATGATGC+TGG | - | chr1_2:54239495-54239514 | Msa0077350:intron | 45.0% | |
| AACTGTCAGGGCTAATTCAG+CGG | + | chr1_2:54239529-54239548 | None:intergenic | 45.0% | |
| GACGTGTTTCTCAACTGTCA+GGG | + | chr1_2:54239541-54239560 | None:intergenic | 45.0% | |
| AGACGTGTTTCTCAACTGTC+AGG | + | chr1_2:54239542-54239561 | None:intergenic | 45.0% | |
| GACAGTTGAGAAACACGTCT+TGG | - | chr1_2:54239542-54239561 | Msa0077350:intron | 45.0% | |
| GAGAAACACGTCTTGGAATC+TGG | - | chr1_2:54239549-54239568 | Msa0077350:intron | 45.0% | |
| GACGACTGCTTCATCAGATA+GGG | + | chr1_2:54240080-54240099 | None:intergenic | 45.0% | |
| TGACGACTGCTTCATCAGAT+AGG | + | chr1_2:54240081-54240100 | None:intergenic | 45.0% | |
| GTTTATGGCCAGGTATTTGC+AGG | - | chr1_2:54240177-54240196 | Msa0077350:intron | 45.0% | |
| ! | TAATTGCAGGGTGTCTCCAA+TGG | - | chr1_2:54240288-54240307 | Msa0077350:intron | 45.0% |
| ! | AATTGCAGGGTGTCTCCAAT+GGG | - | chr1_2:54240289-54240308 | Msa0077350:intron | 45.0% |
| ! | TGTGCGGTTTTTGTCTGTGT+CGG | + | chr1_2:54240436-54240455 | None:intergenic | 45.0% |
| CTGAAGGGACAATTTGGCTA+AGG | + | chr1_2:54240712-54240731 | None:intergenic | 45.0% | |
| CAATAGCAGACATGTGGCTA+AGG | + | chr1_2:54240828-54240847 | None:intergenic | 45.0% | |
| CTTAGCCACATGTCTGCTAT+TGG | - | chr1_2:54240826-54240845 | Msa0077350:intron | 45.0% | |
| CTGAAGGGACAATTTGGCTA+AGG | + | chr1_2:54240712-54240731 | None:intergenic | 45.0% | |
| ! | ACCCTTTTTGTCTAACGTGG+AGG | - | chr1_2:54241163-54241182 | Msa0077350:CDS | 45.0% |
| CCCTCCACGTTAGACAAAAA+GGG | + | chr1_2:54241167-54241186 | None:intergenic | 45.0% | |
| ! | CCCTTTTTGTCTAACGTGGA+GGG | - | chr1_2:54241164-54241183 | Msa0077350:CDS | 45.0% |
| ACCCTCCACGTTAGACAAAA+AGG | + | chr1_2:54241168-54241187 | None:intergenic | 45.0% | |
| ! | CACTGTTGATGAGTAGCGAG+TGG | - | chr1_2:54236823-54236842 | Msa0077350:three_prime_UTR | 50.0% |
| TGCTCAGACTCTGCAAAACC+AGG | - | chr1_2:54237075-54237094 | Msa0077350:CDS | 50.0% | |
| ACCTGCTCCATCAGTAACCA+GGG | - | chr1_2:54237210-54237229 | Msa0077350:intron | 50.0% | |
| ! | GATCCCAGAGAGAGCTTTTG+AGG | + | chr1_2:54237938-54237957 | None:intergenic | 50.0% |
| TGACTAAGCCTTCACAGGTC+TGG | - | chr1_2:54238721-54238740 | Msa0077350:intron | 50.0% | |
| TGCTTTGTGCAGCCGCTTAT+TGG | - | chr1_2:54238898-54238917 | Msa0077350:CDS | 50.0% | |
| TCTCACTCCCAGCCAATAAG+CGG | + | chr1_2:54238913-54238932 | None:intergenic | 50.0% | |
| TTAGATGCTGCAAGGTCTGC+TGG | - | chr1_2:54238983-54239002 | Msa0077350:intron | 50.0% | |
| AGAACAAGGGCCTATTCTGG+AGG | - | chr1_2:54239084-54239103 | Msa0077350:CDS | 50.0% | |
| GTACCTTCGTCCTCCAGAAT+AGG | + | chr1_2:54239097-54239116 | None:intergenic | 50.0% | |
| TAGACTTGCAGGAGCTGCAA+TGG | + | chr1_2:54239221-54239240 | None:intergenic | 50.0% | |
| TTGCAGCTCCTGCAAGTCTA+AGG | - | chr1_2:54239221-54239240 | Msa0077350:intron | 50.0% | |
| TGCAGCTCCTGCAAGTCTAA+GGG | - | chr1_2:54239222-54239241 | Msa0077350:intron | 50.0% | |
| CCACCTGTTAGGCATAAGGA+CGG | + | chr1_2:54239281-54239300 | None:intergenic | 50.0% | |
| GAGCAGAAATGATGCTGGTC+TGG | - | chr1_2:54239500-54239519 | Msa0077350:intron | 50.0% | |
| TCTGGGTCTGTTGATACCGT+TGG | - | chr1_2:54239567-54239586 | Msa0077350:intron | 50.0% | |
| GTTGATACCGTTGGCACTGT+TGG | - | chr1_2:54239576-54239595 | Msa0077350:intron | 50.0% | |
| ! | GGGATGCTATTGATTGCTCC+AGG | + | chr1_2:54239688-54239707 | None:intergenic | 50.0% |
| ACTCAGTGAGCTTGACACCT+CGG | + | chr1_2:54240030-54240049 | None:intergenic | 50.0% | |
| ACTGCTTCATCAGATAGGGC+CGG | + | chr1_2:54240076-54240095 | None:intergenic | 50.0% | |
| TGAAGCAGTCGTCAATGCAG+TGG | - | chr1_2:54240087-54240106 | Msa0077350:intron | 50.0% | |
| CGTTGCCACATGTCTGCTAT+TGG | - | chr1_2:54240500-54240519 | Msa0077350:intron | 50.0% | |
| AGGCACCAATAGCAGACATG+TGG | + | chr1_2:54240508-54240527 | None:intergenic | 50.0% | |
| AGGCACCAATAGCAGACATG+TGG | + | chr1_2:54240508-54240527 | None:intergenic | 50.0% | |
| CACCTGCTCCATCAGTAACC+AGG | - | chr1_2:54237209-54237228 | Msa0077350:intron | 55.0% | |
| ACCCTGGTTACTGATGGAGC+AGG | + | chr1_2:54237214-54237233 | None:intergenic | 55.0% | |
| TGTAGGGATGGCAGTGAACC+CGG | - | chr1_2:54238085-54238104 | Msa0077350:CDS | 55.0% | |
| TGTTGCAACTGCAGCAAGCC+CGG | + | chr1_2:54238107-54238126 | None:intergenic | 55.0% | |
| TCGGAAGAACCCACACGCTT+TGG | - | chr1_2:54238784-54238803 | Msa0077350:intron | 55.0% | |
| TTGTGCAGCCGCTTATTGGC+TGG | - | chr1_2:54238902-54238921 | Msa0077350:CDS | 55.0% | |
| ! | TGTGCAGCCGCTTATTGGCT+GGG | - | chr1_2:54238903-54238922 | Msa0077350:CDS | 55.0% |
| GTGCCGTCCTTATGCCTAAC+AGG | - | chr1_2:54239275-54239294 | Msa0077350:intron | 55.0% | |
| CCGTCCTTATGCCTAACAGG+TGG | - | chr1_2:54239278-54239297 | Msa0077350:intron | 55.0% | |
| GCAGCCACCTGTTAGGCATA+AGG | + | chr1_2:54239285-54239304 | None:intergenic | 55.0% | |
| GGTATCCTGCAACTGCATCC+TGG | - | chr1_2:54239667-54239686 | Msa0077350:intron | 55.0% | |
| TTGCTCCAGGATGCAGTTGC+AGG | + | chr1_2:54239675-54239694 | None:intergenic | 55.0% | |
| CTCAGTGAGCTTGACACCTC+GGG | + | chr1_2:54240029-54240048 | None:intergenic | 55.0% | |
| !! | GTGTCGGCACTGACACACGT+CGG | - | chr1_2:54237454-54237473 | Msa0077350:CDS | 60.0% |
| GTAGGGATGGCAGTGAACCC+GGG | - | chr1_2:54238086-54238105 | Msa0077350:CDS | 60.0% | |
| GTTGCAACTGCAGCAAGCCC+GGG | + | chr1_2:54238106-54238125 | None:intergenic | 60.0% | |
| !! | GGGCTTGCTGCAGTTGCAAC+AGG | - | chr1_2:54238106-54238125 | Msa0077350:CDS | 60.0% |
| ! | GGGCCTATTCTGGAGGACGA+AGG | - | chr1_2:54239091-54239110 | Msa0077350:CDS | 60.0% |
| GAAGGCAATGGTGGCCATGC+AGG | - | chr1_2:54239253-54239272 | Msa0077350:intron | 60.0% | |
| GCATAAGGACGGCACCTGCA+TGG | + | chr1_2:54239270-54239289 | None:intergenic | 60.0% | |
| GCTTCATCAGATAGGGCCGG+TGG | + | chr1_2:54240073-54240092 | None:intergenic | 60.0% | |
| ! | CTTGTCGTCGTCGCTTTCGC+AGG | - | chr1_2:54240615-54240634 | Msa0077350:intron | 60.0% |
| ! | CTTGTCGTCGTCGCTTTCGC+AGG | - | chr1_2:54240615-54240634 | Msa0077350:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 54236822 | 54241301 | 54236822 | ID=Msa0077350;Name=Msa0077350 |
| chr1_2 | mRNA | 54236822 | 54241301 | 54236822 | ID=Msa0077350-mRNA-1;Parent=Msa0077350;Name=Msa0077350-mRNA-1;_AED=0.14;_eAED=0.14;_QI=74|0.91|0.92|1|0.58|0.69|13|241|489 |
| chr1_2 | exon | 54236822 | 54237160 | 54236822 | ID=Msa0077350-mRNA-1:exon:16758;Parent=Msa0077350-mRNA-1 |
| chr1_2 | exon | 54237436 | 54237486 | 54237436 | ID=Msa0077350-mRNA-1:exon:16757;Parent=Msa0077350-mRNA-1 |
| chr1_2 | exon | 54237786 | 54237826 | 54237786 | ID=Msa0077350-mRNA-1:exon:16756;Parent=Msa0077350-mRNA-1 |
| chr1_2 | exon | 54237935 | 54238175 | 54237935 | ID=Msa0077350-mRNA-1:exon:16755;Parent=Msa0077350-mRNA-1 |
| chr1_2 | exon | 54238393 | 54238455 | 54238393 | ID=Msa0077350-mRNA-1:exon:16754;Parent=Msa0077350-mRNA-1 |
| chr1_2 | exon | 54238526 | 54238617 | 54238526 | ID=Msa0077350-mRNA-1:exon:16753;Parent=Msa0077350-mRNA-1 |
| chr1_2 | exon | 54238827 | 54238929 | 54238827 | ID=Msa0077350-mRNA-1:exon:16752;Parent=Msa0077350-mRNA-1 |
| chr1_2 | exon | 54239011 | 54239213 | 54239011 | ID=Msa0077350-mRNA-1:exon:16751;Parent=Msa0077350-mRNA-1 |
| chr1_2 | exon | 54239299 | 54239385 | 54239299 | ID=Msa0077350-mRNA-1:exon:16750;Parent=Msa0077350-mRNA-1 |
| chr1_2 | exon | 54239905 | 54240033 | 54239905 | ID=Msa0077350-mRNA-1:exon:16749;Parent=Msa0077350-mRNA-1 |
| chr1_2 | exon | 54240202 | 54240276 | 54240202 | ID=Msa0077350-mRNA-1:exon:16748;Parent=Msa0077350-mRNA-1 |
| chr1_2 | exon | 54240857 | 54240942 | 54240857 | ID=Msa0077350-mRNA-1:exon:16747;Parent=Msa0077350-mRNA-1 |
| chr1_2 | exon | 54241027 | 54241301 | 54241027 | ID=Msa0077350-mRNA-1:exon:16746;Parent=Msa0077350-mRNA-1 |
| chr1_2 | five_prime_UTR | 54241228 | 54241301 | 54241228 | ID=Msa0077350-mRNA-1:five_prime_utr;Parent=Msa0077350-mRNA-1 |
| chr1_2 | CDS | 54241027 | 54241227 | 54241027 | ID=Msa0077350-mRNA-1:cds;Parent=Msa0077350-mRNA-1 |
| chr1_2 | CDS | 54240857 | 54240942 | 54240857 | ID=Msa0077350-mRNA-1:cds;Parent=Msa0077350-mRNA-1 |
| chr1_2 | CDS | 54240202 | 54240276 | 54240202 | ID=Msa0077350-mRNA-1:cds;Parent=Msa0077350-mRNA-1 |
| chr1_2 | CDS | 54239905 | 54240033 | 54239905 | ID=Msa0077350-mRNA-1:cds;Parent=Msa0077350-mRNA-1 |
| chr1_2 | CDS | 54239299 | 54239385 | 54239299 | ID=Msa0077350-mRNA-1:cds;Parent=Msa0077350-mRNA-1 |
| chr1_2 | CDS | 54239011 | 54239213 | 54239011 | ID=Msa0077350-mRNA-1:cds;Parent=Msa0077350-mRNA-1 |
| chr1_2 | CDS | 54238827 | 54238929 | 54238827 | ID=Msa0077350-mRNA-1:cds;Parent=Msa0077350-mRNA-1 |
| chr1_2 | CDS | 54238526 | 54238617 | 54238526 | ID=Msa0077350-mRNA-1:cds;Parent=Msa0077350-mRNA-1 |
| chr1_2 | CDS | 54238393 | 54238455 | 54238393 | ID=Msa0077350-mRNA-1:cds;Parent=Msa0077350-mRNA-1 |
| chr1_2 | CDS | 54237935 | 54238175 | 54237935 | ID=Msa0077350-mRNA-1:cds;Parent=Msa0077350-mRNA-1 |
| chr1_2 | CDS | 54237786 | 54237826 | 54237786 | ID=Msa0077350-mRNA-1:cds;Parent=Msa0077350-mRNA-1 |
| chr1_2 | CDS | 54237436 | 54237486 | 54237436 | ID=Msa0077350-mRNA-1:cds;Parent=Msa0077350-mRNA-1 |
| chr1_2 | CDS | 54237063 | 54237160 | 54237063 | ID=Msa0077350-mRNA-1:cds;Parent=Msa0077350-mRNA-1 |
| chr1_2 | three_prime_UTR | 54236822 | 54237062 | 54236822 | ID=Msa0077350-mRNA-1:three_prime_utr;Parent=Msa0077350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
