Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0033050 | sp|Q9FR37|AMI1_ARATH | 64.762 | 420 | 144 | 3 | 310 | 725 | 2 | 421 | 0.0 | 541 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033050 | Msa0046360 | 0.807703 | 4.441119e-50 | -8.615850e-47 |
| Msa0033050 | Msa0055530 | 0.800874 | 1.174333e-48 | -8.615850e-47 |
| Msa0033050 | Msa0072710 | 0.811330 | 7.390607e-51 | -8.615850e-47 |
| Msa0033050 | Msa0077350 | 0.808719 | 2.697246e-50 | -8.615850e-47 |
| Msa0033050 | Msa0078080 | 0.804728 | 1.878960e-49 | -8.615850e-47 |
| Msa0033050 | Msa0164630 | 0.829707 | 4.426993e-55 | -8.615850e-47 |
| Msa0033050 | Msa0204030 | 0.804929 | 1.705884e-49 | -8.615850e-47 |
| Msa0033050 | Msa0288220 | 0.840448 | 8.643408e-58 | -8.615850e-47 |
| Msa0033050 | Msa0292070 | 0.809830 | 1.558554e-50 | -8.615850e-47 |
| Msa0033050 | Msa0327860 | 0.813880 | 2.046227e-51 | -8.615850e-47 |
| Msa0033050 | Msa0334980 | 0.803819 | 2.905277e-49 | -8.615850e-47 |
| Msa0033050 | Msa0347130 | 0.816257 | 6.068959e-52 | -8.615850e-47 |
| Msa0033050 | Msa0350020 | 0.830734 | 2.485564e-55 | -8.615850e-47 |
| Msa0033050 | Msa0352200 | 0.804728 | 1.879370e-49 | -8.615850e-47 |
| Msa0033050 | Msa0402640 | 0.805777 | 1.133195e-49 | -8.615850e-47 |
| Msa0033050 | Msa0413740 | 0.806984 | 6.307898e-50 | -8.615850e-47 |
| Msa0033050 | Msa0438440 | 0.802356 | 5.831953e-49 | -8.615850e-47 |
| Msa0033050 | Msa0457380 | 0.834918 | 2.269293e-56 | -8.615850e-47 |
| Msa0033050 | Msa0462190 | 0.802355 | 5.834148e-49 | -8.615850e-47 |
| Msa0033050 | Msa0475740 | 0.801303 | 9.597821e-49 | -8.615850e-47 |
| Msa0033050 | Msa0505390 | 0.806795 | 6.916240e-50 | -8.615850e-47 |
| Msa0033050 | Msa0507190 | 0.819407 | 1.180612e-52 | -8.615850e-47 |
| Msa0033050 | Msa0528870 | 0.819285 | 1.258364e-52 | -8.615850e-47 |
| Msa0033050 | Msa0598260 | 0.816023 | 6.847570e-52 | -8.615850e-47 |
| Msa0033050 | Msa0604700 | 0.805050 | 1.609894e-49 | -8.615850e-47 |
| Msa0033050 | Msa0618260 | 0.829680 | 4.496263e-55 | -8.615850e-47 |
| Msa0033050 | Msa0625310 | 0.814559 | 1.448289e-51 | -8.615850e-47 |
| Msa0033050 | Msa0625440 | 0.822422 | 2.388835e-53 | -8.615850e-47 |
| Msa0033050 | Msa0637910 | 0.826902 | 2.101988e-54 | -8.615850e-47 |
| Msa0033050 | Msa0645780 | 0.813539 | 2.431796e-51 | -8.615850e-47 |
| Msa0033050 | Msa0657820 | 0.805961 | 1.036500e-49 | -8.615850e-47 |
| Msa0033050 | Msa0668160 | 0.810519 | 1.107194e-50 | -8.615850e-47 |
| Msa0033050 | Msa0682200 | 0.805501 | 1.294790e-49 | -8.615850e-47 |
| Msa0033050 | Msa0749900 | 0.806520 | 7.904396e-50 | -8.615850e-47 |
| Msa0033050 | Msa0764020 | 0.802883 | 4.541740e-49 | -8.615850e-47 |
| Msa0033050 | Msa0775580 | 0.812315 | 4.508975e-51 | -8.615850e-47 |
| Msa0033050 | Msa0789800 | 0.815690 | 8.122717e-52 | -8.615850e-47 |
| Msa0033050 | Msa0830120 | 0.818614 | 1.788444e-52 | -8.615850e-47 |
| Msa0033050 | Msa0830450 | 0.817301 | 3.539890e-52 | -8.615850e-47 |
| Msa0033050 | Msa0836200 | 0.802613 | 5.162477e-49 | -8.615850e-47 |
| Msa0033050 | Msa0842270 | 0.804643 | 1.958022e-49 | -8.615850e-47 |
| Msa0033050 | Msa0868040 | 0.818868 | 1.565726e-52 | -8.615850e-47 |
| Msa0033050 | Msa0967670 | 0.808063 | 3.722954e-50 | -8.615850e-47 |
| Msa0033050 | Msa0970050 | 0.801555 | 8.519468e-49 | -8.615850e-47 |
| Msa0033050 | Msa1014350 | 0.802949 | 4.399967e-49 | -8.615850e-47 |
| Msa0033050 | Msa1033710 | 0.809629 | 1.721964e-50 | -8.615850e-47 |
| Msa0033050 | Msa1081700 | 0.812010 | 5.256919e-51 | -8.615850e-47 |
| Msa0033050 | Msa1083850 | 0.811358 | 7.287335e-51 | -8.615850e-47 |
| Msa0033050 | Msa1130650 | 0.805947 | 1.043686e-49 | -8.615850e-47 |
| Msa0033050 | Msa1165290 | 0.820323 | 7.289629e-53 | -8.615850e-47 |
| Msa0033050 | Msa1262310 | 0.800368 | 1.489642e-48 | -8.615850e-47 |
| Msa0033050 | Msa1264560 | 0.803773 | 2.970311e-49 | -8.615850e-47 |
| Msa0033050 | Msa1267330 | 0.828974 | 6.670283e-55 | -8.615850e-47 |
| Msa0033050 | Msa1291140 | 0.802000 | 6.903596e-49 | -8.615850e-47 |
| Msa0033050 | Msa1296930 | 0.801890 | 7.272149e-49 | -8.615850e-47 |
| Msa0033050 | Msa1319720 | 0.833719 | 4.537951e-56 | -8.615850e-47 |
| Msa0033050 | Msa1418200 | 0.805845 | 1.096516e-49 | -8.615850e-47 |
| Msa0033050 | Msa1437650 | 0.810639 | 1.043072e-50 | -8.615850e-47 |
| Msa0033050 | Msa1450420 | 0.803095 | 4.105145e-49 | -8.615850e-47 |
| Msa0033050 | Msa1464560 | 0.804736 | 1.872244e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0033050 | MtrunA17_Chr1g0191741 | 96.000 | 425 | 15 | 1 | 307 | 731 | 1 | 423 | 0.0 | 838 |
| Msa0033050 | MtrunA17_Chr1g0191731 | 96.124 | 258 | 9 | 1 | 1 | 257 | 1 | 258 | 0.0 | 530 |
| Msa0033050 | MtrunA17_Chr8g0393041 | 50.505 | 396 | 195 | 1 | 336 | 731 | 64 | 458 | 5.64e-131 | 400 |
| Msa0033050 | MtrunA17_Chr4g0050371 | 47.887 | 426 | 216 | 2 | 310 | 731 | 44 | 467 | 5.62e-123 | 380 |
| Msa0033050 | MtrunA17_Chr2g0279961 | 36.538 | 156 | 98 | 1 | 328 | 483 | 189 | 343 | 7.70e-20 | 94.4 |
| Msa0033050 | MtrunA17_Chr8g0384851 | 40.940 | 149 | 87 | 1 | 335 | 483 | 203 | 350 | 1.02e-17 | 87.4 |
| Msa0033050 | MtrunA17_Chr8g0385461 | 30.921 | 152 | 98 | 3 | 334 | 484 | 225 | 370 | 6.66e-16 | 81.6 |
| Msa0033050 | MtrunA17_Chr3g0130801 | 36.242 | 149 | 93 | 1 | 335 | 483 | 267 | 413 | 5.75e-15 | 79.0 |
| Msa0033050 | MtrunA17_Chr3g0097801 | 46.018 | 113 | 61 | 0 | 371 | 483 | 141 | 253 | 2.00e-14 | 76.6 |
| Msa0033050 | MtrunA17_Chr8g0377651 | 38.655 | 119 | 67 | 2 | 371 | 484 | 140 | 257 | 3.82e-13 | 72.8 |
| Msa0033050 | MtrunA17_Chr8g0377641 | 37.815 | 119 | 68 | 2 | 371 | 484 | 137 | 254 | 9.21e-13 | 71.2 |
| Msa0033050 | MtrunA17_Chr8g0377681 | 38.655 | 119 | 67 | 3 | 371 | 484 | 137 | 254 | 1.45e-12 | 70.9 |
| Msa0033050 | MtrunA17_Chr8g0377701 | 39.091 | 110 | 61 | 3 | 380 | 484 | 150 | 258 | 2.69e-12 | 70.1 |
| Msa0033050 | MtrunA17_Chr8g0377691 | 40.000 | 110 | 60 | 3 | 380 | 484 | 149 | 257 | 8.45e-12 | 68.2 |
| Msa0033050 | MtrunA17_Chr4g0037521 | 35.772 | 123 | 69 | 3 | 380 | 496 | 141 | 259 | 3.16e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0033050 | AT1G08980.1 | 64.762 | 420 | 144 | 3 | 310 | 725 | 2 | 421 | 0.0 | 541 |
| Msa0033050 | AT3G17970.2 | 50.253 | 396 | 192 | 2 | 338 | 731 | 61 | 453 | 1.85e-127 | 390 |
| Msa0033050 | AT3G17970.1 | 50.253 | 396 | 192 | 2 | 338 | 731 | 61 | 453 | 7.36e-127 | 390 |
| Msa0033050 | AT5G09420.1 | 47.406 | 424 | 217 | 3 | 312 | 730 | 44 | 466 | 2.52e-126 | 389 |
| Msa0033050 | AT3G05250.1 | 53.175 | 252 | 106 | 4 | 15 | 257 | 22 | 270 | 2.77e-84 | 268 |
| Msa0033050 | AT3G05250.3 | 49.751 | 201 | 91 | 3 | 66 | 257 | 2 | 201 | 5.19e-57 | 193 |
| Msa0033050 | AT3G05250.2 | 49.751 | 201 | 91 | 3 | 66 | 257 | 2 | 201 | 5.19e-57 | 193 |
| Msa0033050 | AT5G64440.1 | 34.899 | 149 | 96 | 1 | 335 | 483 | 197 | 344 | 8.98e-19 | 91.3 |
| Msa0033050 | AT5G07360.1 | 32.895 | 152 | 95 | 3 | 334 | 484 | 267 | 412 | 3.90e-16 | 83.2 |
| Msa0033050 | AT5G07360.3 | 32.895 | 152 | 95 | 3 | 334 | 484 | 267 | 412 | 3.90e-16 | 83.2 |
| Msa0033050 | AT3G25660.1 | 38.961 | 154 | 84 | 2 | 334 | 483 | 107 | 254 | 2.61e-14 | 77.0 |
| Msa0033050 | AT5G07360.2 | 31.579 | 152 | 90 | 4 | 334 | 484 | 267 | 405 | 2.18e-12 | 70.9 |
Find 188 sgRNAs with CRISPR-Local
Find 383 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTCAATTGTTGGAGTTTC+TGG | -0.035785 | 1_1:-60212154 | Msa0033050:CDS |
| CGCTGGATCAAAGTTGTTTC+TGG | 0.104420 | 1_1:-60218235 | Msa0033050:CDS |
| ACGTGAAAATTTCAGGATTT+TGG | 0.176886 | 1_1:-60212271 | Msa0033050:intron |
| TCTCTCATCCTTCTATAATT+TGG | 0.189742 | 1_1:+60211697 | None:intergenic |
| GATGAATTTGTTTGTAGTTT+AGG | 0.215401 | 1_1:+60212214 | None:intergenic |
| GATGCTCTTACTTCTCTTCT+TGG | 0.224914 | 1_1:-60212801 | Msa0033050:CDS |
| TATTCAATGTATTACAATAT+TGG | 0.237403 | 1_1:-60217704 | Msa0033050:CDS |
| CCAACTGCACTTAAAATCTT+TGG | 0.243366 | 1_1:+60213545 | None:intergenic |
| ATATCTGTCATTCTATAATA+AGG | 0.252585 | 1_1:-60212833 | Msa0033050:CDS |
| AATCATCTTGTCAGCTTTGC+TGG | 0.254185 | 1_1:+60211911 | None:intergenic |
| AAACTTACAATGATTGATTA+AGG | 0.260467 | 1_1:+60215456 | None:intergenic |
| TGTAACTTTGCAGCAGAAAT+AGG | 0.265094 | 1_1:-60218395 | Msa0033050:five_prime_UTR |
| TTCTACTGCTCCAACAGTTT+TGG | 0.268666 | 1_1:-60215033 | Msa0033050:CDS |
| GAAGATTGGTATTTATATAA+TGG | 0.273103 | 1_1:+60218024 | None:intergenic |
| ATTCAACTATTTCTTGCTTC+AGG | 0.278541 | 1_1:-60216380 | Msa0033050:CDS |
| ATGCTCTTACTTCTCTTCTT+GGG | 0.283942 | 1_1:-60212800 | Msa0033050:CDS |
| ATGAAGGGTCCAAGGCAAAT+TGG | 0.286497 | 1_1:+60218313 | None:intergenic |
| CATTGGAACAACTTCTGATT+TGG | 0.298136 | 1_1:+60213992 | None:intergenic |
| GTGACTGTGTCACTGACTTC+TGG | 0.298954 | 1_1:-60215564 | Msa0033050:CDS |
| GCCAATCAAAATTCGATGTT+TGG | 0.299933 | 1_1:-60215537 | Msa0033050:CDS |
| TCTTCTGCACAAGGATTTCT+AGG | 0.310065 | 1_1:+60214305 | None:intergenic |
| TCATGGATGAAATGGCTTAC+AGG | 0.314486 | 1_1:-60214971 | Msa0033050:intron |
| AAGCTTGTGGATTTCTCTCT+TGG | 0.315423 | 1_1:-60214233 | Msa0033050:intron |
| AAGAAGTCACAAAATTGATT+TGG | 0.318382 | 1_1:+60211745 | None:intergenic |
| CAGAAGAAGGTGGAGGAGTA+TGG | 0.321798 | 1_1:+60218203 | None:intergenic |
| GCGGTTTATATTCAACGATT+AGG | 0.330129 | 1_1:-60216335 | Msa0033050:CDS |
| ATCATTGTCCACCATATCTT+TGG | 0.332218 | 1_1:-60216645 | Msa0033050:CDS |
| GTGATATGAAGTGAAATAAT+AGG | 0.337374 | 1_1:-60218447 | Msa0033050:five_prime_UTR |
| AATTATCTTGCTCGGTGCAC+TGG | 0.343331 | 1_1:+60218417 | None:intergenic |
| GAATTCATCTGCACCATTCC+TGG | 0.352309 | 1_1:+60211982 | None:intergenic |
| AATGCAGTCAAACCTGATTT+AGG | 0.352459 | 1_1:-60212912 | Msa0033050:CDS |
| AAAGGGTATGTAGCTGGATT+TGG | 0.358623 | 1_1:-60215092 | Msa0033050:CDS |
| ATACCAATCTTCAAGATGAT+TGG | 0.360771 | 1_1:-60218013 | Msa0033050:intron |
| CTCAGACTATGGAGCATTCA+TGG | 0.369401 | 1_1:-60215344 | Msa0033050:CDS |
| CTCATGATCCCCACAGTTCC+AGG | 0.370995 | 1_1:-60212244 | Msa0033050:CDS |
| GAAATTCCCGGACCTAAATC+AGG | 0.371160 | 1_1:+60212900 | None:intergenic |
| ACAGCCTCAGACTCAGACTA+TGG | 0.372131 | 1_1:-60215355 | Msa0033050:CDS |
| CAAACGGAATCATGCGAATT+GGG | 0.372161 | 1_1:+60218337 | None:intergenic |
| GTACGTGAAGGCCAAAGTTC+CGG | 0.373448 | 1_1:-60213181 | Msa0033050:CDS |
| CTACTGCAGATGGTATATTA+AGG | 0.375191 | 1_1:-60213221 | Msa0033050:intron |
| TACGTGAAGGCCAAAGTTCC+GGG | 0.381544 | 1_1:-60213180 | Msa0033050:CDS |
| GAGAGAGAGTAAAATATGAT+TGG | 0.386926 | 1_1:-60211668 | Msa0033050:three_prime_UTR |
| TTTAGCCTTCTGTCAATTGT+TGG | 0.387937 | 1_1:-60212163 | Msa0033050:CDS |
| TGAAGGGTCCAAGGCAAATT+GGG | 0.389515 | 1_1:+60218314 | None:intergenic |
| CGATTAGGATGGAGCTCACC+AGG | 0.401263 | 1_1:-60216320 | Msa0033050:CDS |
| ATGCTTCAAACCCGGAACTT+TGG | 0.405620 | 1_1:+60213170 | None:intergenic |
| TGATGTTTCTCAAAATGAAT+TGG | 0.413515 | 1_1:-60216288 | Msa0033050:CDS |
| GCAAACGGAATCATGCGAAT+TGG | 0.413768 | 1_1:+60218336 | None:intergenic |
| TCCGTTTGCCCAATTTGCCT+TGG | 0.414831 | 1_1:-60218322 | Msa0033050:CDS |
| CTCTGCTCTGGCAGTATAAA+CGG | 0.415014 | 1_1:-60214350 | Msa0033050:intron |
| CTGGATTTGGAAATCCTGAT+TGG | 0.416831 | 1_1:-60215079 | Msa0033050:CDS |
| ACACAGAAGGACAAAACAAT+TGG | 0.427119 | 1_1:-60215590 | Msa0033050:intron |
| TTGCATAGCCAAATTATAGA+AGG | 0.428413 | 1_1:-60211705 | Msa0033050:three_prime_UTR |
| AACGGAGAAAATATACACTA+TGG | 0.428548 | 1_1:-60214332 | Msa0033050:CDS |
| TTGGTGTGGTCAAAACATTA+TGG | 0.428857 | 1_1:-60216626 | Msa0033050:CDS |
| AAAACAACTGGCTTCAAACT+TGG | 0.429926 | 1_1:-60217659 | Msa0033050:CDS |
| TGATGAGTCCTTGCCCAATC+AGG | 0.432179 | 1_1:+60215065 | None:intergenic |
| AGTGAATTCAAAGGAAGATC+AGG | 0.433606 | 1_1:+60215289 | None:intergenic |
| CTTTGCAGCAGAAATAGGTT+AGG | 0.434084 | 1_1:-60218390 | Msa0033050:five_prime_UTR |
| CATCAGTTTCTCTGGTGGCC+AGG | 0.435075 | 1_1:-60212000 | Msa0033050:CDS |
| TCTCCCTGCATCAGTTTCTC+TGG | 0.435603 | 1_1:-60212008 | Msa0033050:CDS |
| AAAAGAACCTGAAAAGAAAC+AGG | 0.438715 | 1_1:-60216477 | Msa0033050:CDS |
| TCGGTTCTTGCTCCCAGAAA+AGG | 0.439473 | 1_1:+60216419 | None:intergenic |
| AAACCAATCATCTTGAAGAT+TGG | 0.452758 | 1_1:+60218010 | None:intergenic |
| AGATCAGGGGAAGAAGAAGT+TGG | 0.455048 | 1_1:+60215304 | None:intergenic |
| CAAATAGATTTGATGTGAAA+GGG | 0.455218 | 1_1:-60215109 | Msa0033050:intron |
| TCAAATAGATTTGATGTGAA+AGG | 0.459463 | 1_1:-60215110 | Msa0033050:intron |
| TGTGCAGAAGACCGAGTACC+TGG | 0.460107 | 1_1:-60214293 | Msa0033050:CDS |
| ATTATCTTGCTCGGTGCACT+GGG | 0.461340 | 1_1:+60218418 | None:intergenic |
| GTATCAAAACTCTGTGCCAT+TGG | 0.464094 | 1_1:+60213975 | None:intergenic |
| AGTATAATCAGCAAAACAAC+TGG | 0.465033 | 1_1:-60217671 | Msa0033050:CDS |
| TGCTCTTACTTCTCTTCTTG+GGG | 0.470760 | 1_1:-60212799 | Msa0033050:intron |
| TATCTGTCATTCTATAATAA+GGG | 0.472049 | 1_1:-60212832 | Msa0033050:CDS |
| TAAAACTGTCATGGATGAAA+TGG | 0.474000 | 1_1:-60214979 | Msa0033050:CDS |
| GTCAAACCTGATTTAGGTCC+GGG | 0.474511 | 1_1:-60212906 | Msa0033050:CDS |
| AGTGGCTCTGCTGTTGCAGT+TGG | 0.475708 | 1_1:-60214260 | Msa0033050:CDS |
| TCCAAGGCAAATTGGGCAAA+CGG | 0.479836 | 1_1:+60218321 | None:intergenic |
| GAGTTCCTGCATCGTATTGT+GGG | 0.480183 | 1_1:-60214049 | Msa0033050:CDS |
| AAAATCATAGGAACTGATAC+AGG | 0.481982 | 1_1:-60214083 | Msa0033050:intron |
| TTAAGAATAACCATGGTGAA+TGG | 0.483366 | 1_1:-60212938 | Msa0033050:CDS |
| TGAATTCTTGCTTCACCTTG+TGG | 0.490557 | 1_1:-60211966 | Msa0033050:CDS |
| GATACGCGTTCTGAAATTCC+CGG | 0.490711 | 1_1:+60212888 | None:intergenic |
| GTTTCTCTGGTGGCCAGGAA+TGG | 0.491029 | 1_1:-60211995 | Msa0033050:CDS |
| CACATCTAGGATGGTTTGCT+AGG | 0.495260 | 1_1:-60213571 | Msa0033050:intron |
| AAAGCAGTACAGAAGTTGTA+TGG | 0.496483 | 1_1:-60213404 | Msa0033050:CDS |
| GGCTTCAAACTTGGTTAAGA+CGG | 0.499278 | 1_1:-60217650 | Msa0033050:CDS |
| TGTGTCACTGACTTCTGGAT+TGG | 0.499704 | 1_1:-60215559 | Msa0033050:CDS |
| TCATCAAATATGTACAGGTA+TGG | 0.500375 | 1_1:+60216245 | None:intergenic |
| ATAGGTTAGGATTAGAGCGA+TGG | 0.503618 | 1_1:-60218377 | Msa0033050:exon |
| TGGATTTGGAAATCCTGATT+GGG | 0.503959 | 1_1:-60215078 | Msa0033050:CDS |
| GAATAAGCAAACCTTACAAA+GGG | 0.505617 | 1_1:+60218171 | None:intergenic |
| TGCAGTTGGTGCAAAGCTTG+TGG | 0.505836 | 1_1:-60214246 | Msa0033050:CDS |
| TGATTGGGCAAGGACTCATC+AGG | 0.506790 | 1_1:-60215063 | Msa0033050:CDS |
| TCTATCATACATGGAGTTGA+CGG | 0.507468 | 1_1:-60218062 | Msa0033050:CDS |
| TTTATATTCAACGATTAGGA+TGG | 0.507524 | 1_1:-60216331 | Msa0033050:CDS |
| AGTCAAACCTGATTTAGGTC+CGG | 0.508658 | 1_1:-60212907 | Msa0033050:CDS |
| TTTGTTTGTAGTTTAGGTGG+AGG | 0.511170 | 1_1:+60212220 | None:intergenic |
| AGGTGGAGGACCTGGAACTG+TGG | 0.511646 | 1_1:+60212234 | None:intergenic |
| TGTAGTTTAGGTGGAGGACC+TGG | 0.515140 | 1_1:+60212226 | None:intergenic |
| GGTGGAGGACCTGGAACTGT+GGG | 0.520381 | 1_1:+60212235 | None:intergenic |
| AGATGCCCTACGCACAACTA+AGG | 0.521800 | 1_1:-60212865 | Msa0033050:CDS |
| TAATCTATAGGAGGAGGATG+TGG | 0.523270 | 1_1:-60216670 | Msa0033050:intron |
| GCCACCAGAGAAACTGATGC+AGG | 0.523962 | 1_1:+60212004 | None:intergenic |
| GAATTTGTTTGTAGTTTAGG+TGG | 0.526766 | 1_1:+60212217 | None:intergenic |
| CAATGCTATTATACTCAACA+AGG | 0.528031 | 1_1:-60217861 | Msa0033050:intron |
| CTCAGGACAGCCAAAACTGT+TGG | 0.528096 | 1_1:+60215023 | None:intergenic |
| AAAGTTACAATTATCTTGCT+CGG | 0.528660 | 1_1:+60218409 | None:intergenic |
| ACAAACAAATTCATCTGACT+TGG | 0.528877 | 1_1:-60212206 | Msa0033050:CDS |
| GCTTCAAACTTGGTTAAGAC+GGG | 0.529713 | 1_1:-60217649 | Msa0033050:CDS |
| ATATTAAGGCATGAAATCCT+TGG | 0.530229 | 1_1:-60213207 | Msa0033050:CDS |
| GATGTGAAAGGGTATGTAGC+TGG | 0.535739 | 1_1:-60215098 | Msa0033050:CDS |
| GTGATGGAATGTTGTATACT+TGG | 0.541760 | 1_1:+60213124 | None:intergenic |
| TTACATGTCTTTGACTGCAA+AGG | 0.544281 | 1_1:+60215264 | None:intergenic |
| CTAGAAAGTGCAGCCAGTGA+TGG | 0.544361 | 1_1:+60213108 | None:intergenic |
| ATTCTCCTTAGTTGTGCGTA+GGG | 0.546977 | 1_1:+60212860 | None:intergenic |
| TTGGAGATTCTGCCATGAGA+AGG | 0.548028 | 1_1:+60214011 | None:intergenic |
| TATTCTCCTTAGTTGTGCGT+AGG | 0.550707 | 1_1:+60212859 | None:intergenic |
| GTGCCATGCGATTGCTTCAG+AGG | 0.554166 | 1_1:-60213086 | Msa0033050:intron |
| ATTTATATAATGGCGTTGAA+AGG | 0.554700 | 1_1:+60218034 | None:intergenic |
| CCCTGCATCAGTTTCTCTGG+TGG | 0.555780 | 1_1:-60212005 | Msa0033050:CDS |
| CAAATCAGAAGTTGTTCCAA+TGG | 0.559736 | 1_1:-60213991 | Msa0033050:CDS |
| GAGGTAGGAAGGTTGAATGA+AGG | 0.559769 | 1_1:+60218297 | None:intergenic |
| TTGGAAATCCTGATTGGGCA+AGG | 0.561719 | 1_1:-60215073 | Msa0033050:CDS |
| GAGCCACTAGAAGATCCTCC+AGG | 0.564074 | 1_1:+60214275 | None:intergenic |
| AAAAGGCCTAGCTGCTTCAG+AGG | 0.567388 | 1_1:+60216436 | None:intergenic |
| AGAGTTCCTGCATCGTATTG+TGG | 0.570485 | 1_1:-60214050 | Msa0033050:CDS |
| TAGAAGATCCTCCAGGTACT+CGG | 0.570948 | 1_1:+60214282 | None:intergenic |
| AAGAAGGTGGAGGAGTATGG+TGG | 0.572598 | 1_1:+60218206 | None:intergenic |
| ACATCTAGGATGGTTTGCTA+GGG | 0.574798 | 1_1:-60213570 | Msa0033050:intron |
| AGTATACAACATTCCATCAC+TGG | 0.575077 | 1_1:-60213121 | Msa0033050:CDS |
| CTCATGAAATGCTTCAAACC+CGG | 0.575467 | 1_1:+60213162 | None:intergenic |
| TCAGGGGAAGAAGAAGTTGG+TGG | 0.576808 | 1_1:+60215307 | None:intergenic |
| TGTCCACCATATCTTTGGTG+TGG | 0.577441 | 1_1:-60216640 | Msa0033050:CDS |
| AAAATCCCACAATACGATGC+AGG | 0.581206 | 1_1:+60214044 | None:intergenic |
| CTCAAAACTCATGAATCACA+CGG | 0.583218 | 1_1:-60215509 | Msa0033050:CDS |
| AGTGCAGGTGCCACTTGTGT+TGG | 0.587175 | 1_1:-60215002 | Msa0033050:CDS |
| ATTCGTGAAACTACATCGAA+AGG | 0.587732 | 1_1:+60213434 | None:intergenic |
| AGGTAGGAAGGTTGAATGAA+GGG | 0.590579 | 1_1:+60218298 | None:intergenic |
| GGAATAAGCAAACCTTACAA+AGG | 0.594836 | 1_1:+60218170 | None:intergenic |
| TACTCAGATTATCATTGCAG+AGG | 0.595678 | 1_1:-60213480 | Msa0033050:CDS |
| CACAAGTGGCACCTGCACTC+AGG | 0.599971 | 1_1:+60215006 | None:intergenic |
| TTGCAGGTAAGCATACCACT+AGG | 0.600924 | 1_1:-60212043 | Msa0033050:intron |
| ATGTAAACAGTGATCGAGGT+AGG | 0.602534 | 1_1:+60218282 | None:intergenic |
| GAATATTGAAGCTTATGATG+CGG | 0.603295 | 1_1:-60216354 | Msa0033050:CDS |
| AAACAGTGATCGAGGTAGGA+AGG | 0.605360 | 1_1:+60218286 | None:intergenic |
| AAGGTTGAATGAAGGGTCCA+AGG | 0.608490 | 1_1:+60218305 | None:intergenic |
| TGTCTGCCTCTGAAGCAGCT+AGG | 0.610372 | 1_1:-60216442 | Msa0033050:CDS |
| GGAAATTCAAGCTCTTACCC+AGG | 0.610935 | 1_1:-60217628 | Msa0033050:intron |
| TTGTGTTGGTAAAACTGTCA+TGG | 0.611411 | 1_1:-60214988 | Msa0033050:CDS |
| GTGAATTCAAAGGAAGATCA+GGG | 0.611924 | 1_1:+60215290 | None:intergenic |
| TGCTCCATAGTCTGAGTCTG+AGG | 0.614634 | 1_1:+60215351 | None:intergenic |
| AATAAGCAAACCTTACAAAG+GGG | 0.618535 | 1_1:+60218172 | None:intergenic |
| GGTACTCGGTCTTCTGCACA+AGG | 0.622489 | 1_1:+60214296 | None:intergenic |
| GTACCTGGAGGATCTTCTAG+TGG | 0.622763 | 1_1:-60214278 | Msa0033050:CDS |
| CATTTAACAGAAGAAGGTGG+AGG | 0.624245 | 1_1:+60218196 | None:intergenic |
| TCTGCAATGATAATCTGAGT+AGG | 0.625913 | 1_1:+60213482 | None:intergenic |
| CTGCATTGATCCATTCACCA+TGG | 0.629877 | 1_1:+60212928 | None:intergenic |
| TGGTCAAAACATTATGGACA+AGG | 0.631128 | 1_1:-60216620 | Msa0033050:intron |
| AGCGATGGAAGATAAATCAT+CGG | 0.631826 | 1_1:-60218362 | Msa0033050:exon |
| GATTAGGATGGAGCTCACCA+GGG | 0.636076 | 1_1:-60216319 | Msa0033050:CDS |
| TGACCACACCAAAGATATGG+TGG | 0.639987 | 1_1:+60216637 | None:intergenic |
| CCACCAGAGAAACTGATGCA+GGG | 0.640553 | 1_1:+60212005 | None:intergenic |
| TATGAATTTAAGAATAACCA+TGG | 0.640782 | 1_1:-60212945 | Msa0033050:CDS |
| AAAACGTAATACAGTAGACA+TGG | 0.641014 | 1_1:-60215380 | Msa0033050:intron |
| AGAAGGACAAAACAATTGGA+AGG | 0.641067 | 1_1:-60215586 | Msa0033050:CDS |
| AAACTCCAACAATTGACAGA+AGG | 0.641345 | 1_1:+60212158 | None:intergenic |
| GCAAAGGTGAGTGAATTCAA+AGG | 0.643640 | 1_1:+60215280 | None:intergenic |
| ATTGATGTAAACAGTGATCG+AGG | 0.649781 | 1_1:+60218278 | None:intergenic |
| ATCATAGGAACTGATACAGG+AGG | 0.652771 | 1_1:-60214080 | Msa0033050:intron |
| ATACCTCTGAAGCAATCGCA+TGG | 0.654077 | 1_1:+60213083 | None:intergenic |
| TGCAGGTAAGCATACCACTA+GGG | 0.654224 | 1_1:-60212042 | Msa0033050:intron |
| TGGCCTTCACGTACTCACCA+AGG | 0.657061 | 1_1:+60213190 | None:intergenic |
| AATCTCATACACAAATCTGT+CGG | 0.662448 | 1_1:+60216400 | None:intergenic |
| CCTTTGTTGAGTAGGTTGCG+TGG | 0.667782 | 1_1:-60217733 | Msa0033050:intron |
| AATCCTTGGTGAGTACGTGA+AGG | 0.677095 | 1_1:-60213193 | Msa0033050:CDS |
| GCAGTACAGAAGTTGTATGG+AGG | 0.682525 | 1_1:-60213401 | Msa0033050:intron |
| ATAAGCAAACCTTACAAAGG+GGG | 0.683848 | 1_1:+60218173 | None:intergenic |
| AGAACCTGAAAAGAAACAGG+AGG | 0.686534 | 1_1:-60216474 | Msa0033050:CDS |
| GTGGAGGACCTGGAACTGTG+GGG | 0.688610 | 1_1:+60212236 | None:intergenic |
| TCAAAACTCATGAATCACAC+GGG | 0.691003 | 1_1:-60215508 | Msa0033050:CDS |
| ATTAGGATGGAGCTCACCAG+GGG | 0.691130 | 1_1:-60216318 | Msa0033050:CDS |
| GGTCTAATGTGTGTGATGCG+TGG | 0.691925 | 1_1:+60213503 | None:intergenic |
| GGGCATTTAACAGAAGAAGG+TGG | 0.695817 | 1_1:+60218193 | None:intergenic |
| AGATCATTATACATCCCTAG+TGG | 0.705039 | 1_1:+60212028 | None:intergenic |
| TGAATTCAAAGGAAGATCAG+GGG | 0.705048 | 1_1:+60215291 | None:intergenic |
| TATCATAAATACTCTCCACA+AGG | 0.718171 | 1_1:+60211951 | None:intergenic |
| GCAGAAGACCGAGTACCTGG+AGG | 0.734688 | 1_1:-60214290 | Msa0033050:CDS |
| TTATCTTGCTCGGTGCACTG+GGG | 0.774558 | 1_1:+60218419 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAAATTAGTTAAATGAA+AGG | + | chr1_1:60212328-60212347 | None:intergenic | 15.0% |
| !! | TATTCAATGTATTACAATAT+TGG | - | chr1_1:60212444-60212463 | Msa0033050:intron | 15.0% |
| !! | GAATGAAATAAAGAATAATA+TGG | - | chr1_1:60214497-60214516 | Msa0033050:intron | 15.0% |
| !!! | ATTTAAAGTAAAATGAATGA+TGG | - | chr1_1:60215307-60215326 | Msa0033050:CDS | 15.0% |
| !!! | ATATGTAGGAATATTTTATT+AGG | - | chr1_1:60215683-60215702 | Msa0033050:intron | 15.0% |
| !!! | TTAGTTTTTGTTAAAATCAT+AGG | - | chr1_1:60216053-60216072 | Msa0033050:intron | 15.0% |
| !!! | TCTATTAAATCTCTTTTTTT+GGG | - | chr1_1:60216225-60216244 | Msa0033050:intron | 15.0% |
| !!! | TATAATTTTTATCGTGAAAA+TGG | + | chr1_1:60217740-60217759 | None:intergenic | 15.0% |
| !! | TACTTAAATAATGAAGAAAT+AGG | + | chr1_1:60218065-60218084 | None:intergenic | 15.0% |
| !! | TTATGATAACATTGAAAAAT+AGG | - | chr1_1:60218212-60218231 | Msa0033050:CDS | 15.0% |
| !!! | AAATTTTTATACTCAAATTG+AGG | - | chr1_1:60218301-60218320 | Msa0033050:CDS | 15.0% |
| !!! | CATTTTCTTTTCCTTTTAAA+AGG | + | chr1_1:60211673-60211692 | None:intergenic | 20.0% |
| !!! | GATAATTTTTCTATCATACA+TGG | - | chr1_1:60212077-60212096 | Msa0033050:intron | 20.0% |
| !! | GAAGATTGGTATTTATATAA+TGG | + | chr1_1:60212127-60212146 | None:intergenic | 20.0% |
| !! | TCATTTAACTAATTTCTTAC+TGG | - | chr1_1:60212329-60212348 | Msa0033050:intron | 20.0% |
| !! | AAATGCAATCACTAATAATT+AGG | + | chr1_1:60212683-60212702 | None:intergenic | 20.0% |
| !! | ATAAGATTTGATTCACAATA+TGG | - | chr1_1:60213404-60213423 | Msa0033050:CDS | 20.0% |
| !! | TTATTTCAACTTCACAAAAT+TGG | - | chr1_1:60214277-60214296 | Msa0033050:CDS | 20.0% |
| !!! | ATTTTAATTTTCCAAACACT+TGG | + | chr1_1:60214451-60214470 | None:intergenic | 20.0% |
| !! | AAACTTACAATGATTGATTA+AGG | + | chr1_1:60214695-60214714 | None:intergenic | 20.0% |
| !! | TATAACTTTCTTAAGATTCT+CGG | - | chr1_1:60214915-60214934 | Msa0033050:intron | 20.0% |
| !! | TTACTTATAAGCTTATATGT+AGG | - | chr1_1:60215669-60215688 | Msa0033050:intron | 20.0% |
| !! | AAAAAAATACAACTACTCTT+AGG | + | chr1_1:60215720-60215739 | None:intergenic | 20.0% |
| !!! | TAAGAGTAGTTGTATTTTTT+TGG | - | chr1_1:60215719-60215738 | Msa0033050:intron | 20.0% |
| !!! | TATGTTTTTCCTTTAAATGT+AGG | - | chr1_1:60215999-60216018 | Msa0033050:intron | 20.0% |
| !!! | CTCTATTAAATCTCTTTTTT+TGG | - | chr1_1:60216224-60216243 | Msa0033050:intron | 20.0% |
| !! | AATATCAATCTAGAGAATAA+GGG | + | chr1_1:60216543-60216562 | None:intergenic | 20.0% |
| !! | AAGGACTTAAATTTAACTAA+AGG | + | chr1_1:60217157-60217176 | None:intergenic | 20.0% |
| !! | CACAAATAGTAAAAAAATCA+AGG | + | chr1_1:60217176-60217195 | None:intergenic | 20.0% |
| !!! | TTTTTTACTATTTGTGACAT+AGG | - | chr1_1:60217180-60217199 | Msa0033050:intron | 20.0% |
| !! | TATGAATTTAAGAATAACCA+TGG | - | chr1_1:60217203-60217222 | Msa0033050:intron | 20.0% |
| !! | ATATCTGTCATTCTATAATA+AGG | - | chr1_1:60217315-60217334 | Msa0033050:intron | 20.0% |
| !! | TATCTGTCATTCTATAATAA+GGG | - | chr1_1:60217316-60217335 | Msa0033050:intron | 20.0% |
| !!! | TTACTTTTTTTATTACTGCA+AGG | - | chr1_1:60218263-60218282 | Msa0033050:CDS | 20.0% |
| !!! | TACTTTTTTTATTACTGCAA+GGG | - | chr1_1:60218264-60218283 | Msa0033050:CDS | 20.0% |
| !!! | TTTCTTTTCCTTTTAAAAGG+AGG | + | chr1_1:60211670-60211689 | None:intergenic | 25.0% |
| ! | GTGATATGAAGTGAAATAAT+AGG | - | chr1_1:60211701-60211720 | Msa0033050:three_prime_UTR | 25.0% |
| ! | AAAGTTACAATTATCTTGCT+CGG | + | chr1_1:60211742-60211761 | None:intergenic | 25.0% |
| !! | ATTTATATAATGGCGTTGAA+AGG | + | chr1_1:60212117-60212136 | None:intergenic | 25.0% |
| ! | GAAATTAGTTAAATGAAAGG+TGG | + | chr1_1:60212325-60212344 | None:intergenic | 25.0% |
| ! | TCTATACAAATCAAATGACA+CGG | + | chr1_1:60212358-60212377 | None:intergenic | 25.0% |
| !!! | TATTTTTACCTTTGTTGAGT+AGG | - | chr1_1:60212407-60212426 | Msa0033050:intron | 25.0% |
| !!! | TAGTTAATTTGTCAGATTAG+TGG | - | chr1_1:60212544-60212563 | Msa0033050:intron | 25.0% |
| ! | AAATCCACATAGTATATAAC+TGG | + | chr1_1:60212619-60212638 | None:intergenic | 25.0% |
| ! | GTTCGTGTATTATAATTGTT+AGG | + | chr1_1:60212832-60212851 | None:intergenic | 25.0% |
| ! | TCAAAAGAAACTAATAACCT+TGG | + | chr1_1:60213073-60213092 | None:intergenic | 25.0% |
| ! | TTCCTAACGTATATATATCT+TGG | - | chr1_1:60213120-60213139 | Msa0033050:CDS | 25.0% |
| ! | ATCCAAGATATATATACGTT+AGG | + | chr1_1:60213125-60213144 | None:intergenic | 25.0% |
| !!! | GATTACTGTAAACTAGTTTT+TGG | + | chr1_1:60213201-60213220 | None:intergenic | 25.0% |
| ! | TTTATATTCAACGATTAGGA+TGG | - | chr1_1:60213817-60213836 | Msa0033050:intron | 25.0% |
| ! | TGATGTTTCTCAAAATGAAT+TGG | - | chr1_1:60213860-60213879 | Msa0033050:intron | 25.0% |
| ! | TTGCTGTAATTCATGAATAA+TGG | - | chr1_1:60213976-60213995 | Msa0033050:CDS | 25.0% |
| ! | TGCTGTAATTCATGAATAAT+GGG | - | chr1_1:60213977-60213996 | Msa0033050:CDS | 25.0% |
| !! | ATTGTAACGTAGTCTTTTAA+TGG | - | chr1_1:60214107-60214126 | Msa0033050:intron | 25.0% |
| ! | TTATTCATTTAACGTTCCAA+CGG | + | chr1_1:60214370-60214389 | None:intergenic | 25.0% |
| ! | AAAAAACGCAATATCTTTGT+TGG | - | chr1_1:60214533-60214552 | Msa0033050:intron | 25.0% |
| ! | TGAAATATGAGTAAACTTTG+AGG | + | chr1_1:60214958-60214977 | None:intergenic | 25.0% |
| ! | TCAAATAGATTTGATGTGAA+AGG | - | chr1_1:60215038-60215057 | Msa0033050:CDS | 25.0% |
| ! | CAAATAGATTTGATGTGAAA+GGG | - | chr1_1:60215039-60215058 | Msa0033050:CDS | 25.0% |
| !!! | GCTTTATTTTTCAGTTTCTA+AGG | - | chr1_1:60215261-60215280 | Msa0033050:intron | 25.0% |
| !!! | AGATTAGATACAGTTTTTAG+TGG | + | chr1_1:60215575-60215594 | None:intergenic | 25.0% |
| ! | TAACTTTGAATCTTATCACA+AGG | - | chr1_1:60215621-60215640 | Msa0033050:intron | 25.0% |
| ! | AACTTTGAATCTTATCACAA+GGG | - | chr1_1:60215622-60215641 | Msa0033050:intron | 25.0% |
| !!! | TAGTTGTATTTTTTTGGTGT+TGG | - | chr1_1:60215725-60215744 | Msa0033050:intron | 25.0% |
| !!! | AGTTGTATTTTTTTGGTGTT+GGG | - | chr1_1:60215726-60215745 | Msa0033050:intron | 25.0% |
| ! | ACTAAAGATTATTAATCCCA+TGG | + | chr1_1:60216038-60216057 | None:intergenic | 25.0% |
| !! | TATCTAAAACTGATGTCATT+AGG | + | chr1_1:60216365-60216384 | None:intergenic | 25.0% |
| ! | GAATATCAATCTAGAGAATA+AGG | + | chr1_1:60216544-60216563 | None:intergenic | 25.0% |
| ! | ATACATGTCAAACATCATTA+TGG | + | chr1_1:60216864-60216883 | None:intergenic | 25.0% |
| !! | TTTTATTCTTCAAGTGATTG+TGG | - | chr1_1:60217125-60217144 | Msa0033050:intron | 25.0% |
| ! | TGATAGATACCAAAAACAAA+AGG | + | chr1_1:60217643-60217662 | None:intergenic | 25.0% |
| ! | ATTCTACATATGAAGATTGT+AGG | - | chr1_1:60217687-60217706 | Msa0033050:CDS | 25.0% |
| !!! | GAAGATAACTTTTTGAAAGA+AGG | + | chr1_1:60217797-60217816 | None:intergenic | 25.0% |
| ! | TTATCTTCATACTACTTATG+AGG | - | chr1_1:60217809-60217828 | Msa0033050:intron | 25.0% |
| !! | GATGAATTTGTTTGTAGTTT+AGG | + | chr1_1:60217937-60217956 | None:intergenic | 25.0% |
| ! | AAGAAGTCACAAAATTGATT+TGG | + | chr1_1:60218406-60218425 | None:intergenic | 25.0% |
| AATAAGCAAACCTTACAAAG+GGG | + | chr1_1:60211979-60211998 | None:intergenic | 30.0% | |
| GAATAAGCAAACCTTACAAA+GGG | + | chr1_1:60211980-60211999 | None:intergenic | 30.0% | |
| ATACCAATCTTCAAGATGAT+TGG | - | chr1_1:60212135-60212154 | Msa0033050:intron | 30.0% | |
| AAACCAATCATCTTGAAGAT+TGG | + | chr1_1:60212141-60212160 | None:intergenic | 30.0% | |
| CAATGCTATTATACTCAACA+AGG | - | chr1_1:60212287-60212306 | Msa0033050:intron | 30.0% | |
| AGTATAATCAGCAAAACAAC+TGG | - | chr1_1:60212477-60212496 | Msa0033050:intron | 30.0% | |
| TCTGACAAATTAACTAACCT+GGG | + | chr1_1:60212540-60212559 | None:intergenic | 30.0% | |
| ATCTGACAAATTAACTAACC+TGG | + | chr1_1:60212541-60212560 | None:intergenic | 30.0% | |
| CACATAGTATATAACTGGTT+AGG | + | chr1_1:60212614-60212633 | None:intergenic | 30.0% | |
| CTAACCAGTTATATACTATG+TGG | - | chr1_1:60212612-60212631 | Msa0033050:intron | 30.0% | |
| AATCACATGTTTGACTACAT+TGG | + | chr1_1:60212729-60212748 | None:intergenic | 30.0% | |
| GTCAAACATGTGATTTAAGT+TGG | - | chr1_1:60212734-60212753 | Msa0033050:intron | 30.0% | |
| TTTAAAGATCGTAAACACGA+GGG | - | chr1_1:60212769-60212788 | Msa0033050:intron | 30.0% | |
| !!! | GTTTGTTTTTGCAGATTTTG+TGG | + | chr1_1:60212960-60212979 | None:intergenic | 30.0% |
| GTAATGAATCGAGATTTATC+AGG | + | chr1_1:60213166-60213185 | None:intergenic | 30.0% | |
| AACGTCAACAACAACAAAAA+CGG | + | chr1_1:60213229-60213248 | None:intergenic | 30.0% | |
| TGTTAACCATGAATACTACT+TGG | - | chr1_1:60213436-60213455 | Msa0033050:CDS | 30.0% | |
| CCTATAGATTAAGCAAAATG+AGG | + | chr1_1:60213469-60213488 | None:intergenic | 30.0% | |
| ! | CCTCATTTTGCTTAATCTAT+AGG | - | chr1_1:60213466-60213485 | Msa0033050:CDS | 30.0% |
| ! | CATTTTGCTTAATCTATAGG+AGG | - | chr1_1:60213469-60213488 | Msa0033050:CDS | 30.0% |
| AAAAGAACCTGAAAAGAAAC+AGG | - | chr1_1:60213671-60213690 | Msa0033050:intron | 30.0% | |
| AATCTCATACACAAATCTGT+CGG | + | chr1_1:60213751-60213770 | None:intergenic | 30.0% | |
| ! | ATTCAACTATTTCTTGCTTC+AGG | - | chr1_1:60213768-60213787 | Msa0033050:intron | 30.0% |
| GAATATTGAAGCTTATGATG+CGG | - | chr1_1:60213794-60213813 | Msa0033050:intron | 30.0% | |
| TCATCAAATATGTACAGGTA+TGG | + | chr1_1:60213906-60213925 | None:intergenic | 30.0% | |
| AGTCATCATCAAATATGTAC+AGG | + | chr1_1:60213911-60213930 | None:intergenic | 30.0% | |
| !! | ATATTTGATGATGACTCTGA+TGG | - | chr1_1:60213915-60213934 | Msa0033050:intron | 30.0% |
| TATATGAAAGAGCGATATTG+CGG | - | chr1_1:60214035-60214054 | Msa0033050:CDS | 30.0% | |
| TACAATTTCAAACCCTTGAA+TGG | + | chr1_1:60214093-60214112 | None:intergenic | 30.0% | |
| AGTAACAAGTCTTGATCTTA+TGG | - | chr1_1:60214146-60214165 | Msa0033050:intron | 30.0% | |
| ! | TTGATATTCAATAGCGGAAA+AGG | + | chr1_1:60214208-60214227 | None:intergenic | 30.0% |
| ! | AGGCTTTTGATATTCAATAG+CGG | + | chr1_1:60214214-60214233 | None:intergenic | 30.0% |
| ACAAAAATGTTGTTAGCTAG+CGG | + | chr1_1:60214255-60214274 | None:intergenic | 30.0% | |
| GCAAAATAAAATAAACGCCT+TGG | - | chr1_1:60214406-60214425 | Msa0033050:intron | 30.0% | |
| AATAAACGCCTTGGTTAAAA+AGG | - | chr1_1:60214415-60214434 | Msa0033050:intron | 30.0% | |
| ATAAACGCCTTGGTTAAAAA+GGG | - | chr1_1:60214416-60214435 | Msa0033050:intron | 30.0% | |
| AAAACGTAATACAGTAGACA+TGG | - | chr1_1:60214768-60214787 | Msa0033050:intron | 30.0% | |
| TCCATGTATATTGAACTTGA+TGG | - | chr1_1:60214996-60215015 | Msa0033050:CDS | 30.0% | |
| TCCATCAAGTTCAATATACA+TGG | + | chr1_1:60215000-60215019 | None:intergenic | 30.0% | |
| TAAAACTGTCATGGATGAAA+TGG | - | chr1_1:60215169-60215188 | Msa0033050:intron | 30.0% | |
| CTTGTTTGTCTAAATCAAGT+TGG | - | chr1_1:60215364-60215383 | Msa0033050:CDS | 30.0% | |
| AAGAAGTAGGTTATGTTGAA+AGG | - | chr1_1:60215511-60215530 | Msa0033050:CDS | 30.0% | |
| AACGGAGAAAATATACACTA+TGG | - | chr1_1:60215816-60215835 | Msa0033050:intron | 30.0% | |
| GCTCAAAACAACTAATGAAA+TGG | + | chr1_1:60215953-60215972 | None:intergenic | 30.0% | |
| !! | GAAGAGTATCCTACATTTAA+AGG | + | chr1_1:60216011-60216030 | None:intergenic | 30.0% |
| AAAATCATAGGAACTGATAC+AGG | - | chr1_1:60216065-60216084 | Msa0033050:intron | 30.0% | |
| !! | TTGGTAATAATCCGCAATTT+TGG | - | chr1_1:60216198-60216217 | Msa0033050:intron | 30.0% |
| !! | ATTCATTGTTCTAGAGGATA+TGG | - | chr1_1:60216251-60216270 | Msa0033050:intron | 30.0% |
| !!! | CAGTTTTAGATATTCTCTTG+AGG | - | chr1_1:60216373-60216392 | Msa0033050:CDS | 30.0% |
| GATTGAATAAAGAATCTCTC+AGG | + | chr1_1:60216441-60216460 | None:intergenic | 30.0% | |
| TTATTCGCATATTCACATCT+AGG | - | chr1_1:60216564-60216583 | Msa0033050:intron | 30.0% | |
| ATATTAAGGCATGAAATCCT+TGG | - | chr1_1:60216941-60216960 | Msa0033050:intron | 30.0% | |
| TTAAGAATAACCATGGTGAA+TGG | - | chr1_1:60217210-60217229 | Msa0033050:intron | 30.0% | |
| ATGTAACATATCATTGCTCT+TGG | - | chr1_1:60217461-60217480 | Msa0033050:intron | 30.0% | |
| !!! | TACACCATACCTTTTGTTTT+TGG | - | chr1_1:60217631-60217650 | Msa0033050:CDS | 30.0% |
| GATACCAAAAACAAAAGGTA+TGG | + | chr1_1:60217638-60217657 | None:intergenic | 30.0% | |
| ! | AATGAGTTGAAGACAAAGAA+TGG | + | chr1_1:60217847-60217866 | None:intergenic | 30.0% |
| ACAGTTTACGTGAAAATTTC+AGG | - | chr1_1:60217870-60217889 | Msa0033050:CDS | 30.0% | |
| ! | ACGTGAAAATTTCAGGATTT+TGG | - | chr1_1:60217877-60217896 | Msa0033050:CDS | 30.0% |
| ! | GAATTTGTTTGTAGTTTAGG+TGG | + | chr1_1:60217934-60217953 | None:intergenic | 30.0% |
| ACAAACAAATTCATCTGACT+TGG | - | chr1_1:60217942-60217961 | Msa0033050:intron | 30.0% | |
| !!! | TTTTTTTCTCAACACTTTGC+AGG | - | chr1_1:60218089-60218108 | Msa0033050:intron | 30.0% |
| TATCATAAATACTCTCCACA+AGG | + | chr1_1:60218200-60218219 | None:intergenic | 30.0% | |
| !!! | TGAAGAAGTTTTTTGAAGTC+TGG | - | chr1_1:60218324-60218343 | Msa0033050:CDS | 30.0% |
| TTGCATAGCCAAATTATAGA+AGG | - | chr1_1:60218443-60218462 | Msa0033050:five_prime_UTR | 30.0% | |
| TCTCTCATCCTTCTATAATT+TGG | + | chr1_1:60218454-60218473 | None:intergenic | 30.0% | |
| GAGAGAGAGTAAAATATGAT+TGG | - | chr1_1:60218480-60218499 | Msa0033050:five_prime_UTR | 30.0% | |
| TGTAACTTTGCAGCAGAAAT+AGG | - | chr1_1:60211753-60211772 | Msa0033050:three_prime_UTR | 35.0% | |
| AGCGATGGAAGATAAATCAT+CGG | - | chr1_1:60211786-60211805 | Msa0033050:three_prime_UTR | 35.0% | |
| ATTGATGTAAACAGTGATCG+AGG | + | chr1_1:60211873-60211892 | None:intergenic | 35.0% | |
| ATAAGCAAACCTTACAAAGG+GGG | + | chr1_1:60211978-60211997 | None:intergenic | 35.0% | |
| GGAATAAGCAAACCTTACAA+AGG | + | chr1_1:60211981-60212000 | None:intergenic | 35.0% | |
| AATGAAGAGTAATGAGAGAG+AGG | + | chr1_1:60212002-60212021 | None:intergenic | 35.0% | |
| TCTATCATACATGGAGTTGA+CGG | - | chr1_1:60212086-60212105 | Msa0033050:intron | 35.0% | |
| ! | AAAACAACTGGCTTCAAACT+TGG | - | chr1_1:60212489-60212508 | Msa0033050:intron | 35.0% |
| ! | ATTGGTGGTACTAGTTATGA+AGG | + | chr1_1:60212711-60212730 | None:intergenic | 35.0% |
| GTTTAAAGATCGTAAACACG+AGG | - | chr1_1:60212768-60212787 | Msa0033050:intron | 35.0% | |
| TTCCATAGAAACAACTCCAA+TGG | - | chr1_1:60212883-60212902 | Msa0033050:CDS | 35.0% | |
| TCGTGTAAAAGAAACGAGTT+GGG | + | chr1_1:60212913-60212932 | None:intergenic | 35.0% | |
| ATCGTGTAAAAGAAACGAGT+TGG | + | chr1_1:60212914-60212933 | None:intergenic | 35.0% | |
| ! | TTTTTGCAGATTTTGTGGTC+AGG | + | chr1_1:60212955-60212974 | None:intergenic | 35.0% |
| ATGAGTCCAAGTAGTATTCA+TGG | + | chr1_1:60213445-60213464 | None:intergenic | 35.0% | |
| TTTGCTTAATCTATAGGAGG+AGG | - | chr1_1:60213472-60213491 | Msa0033050:CDS | 35.0% | |
| ATCATTGTCCACCATATCTT+TGG | - | chr1_1:60213503-60213522 | Msa0033050:CDS | 35.0% | |
| ! | TTTTGACCACACCAAAGATA+TGG | + | chr1_1:60213517-60213536 | None:intergenic | 35.0% |
| TTGGTGTGGTCAAAACATTA+TGG | - | chr1_1:60213522-60213541 | Msa0033050:CDS | 35.0% | |
| TGGTCAAAACATTATGGACA+AGG | - | chr1_1:60213528-60213547 | Msa0033050:CDS | 35.0% | |
| GCGGTTTATATTCAACGATT+AGG | - | chr1_1:60213813-60213832 | Msa0033050:intron | 35.0% | |
| ATTTACTACTGCACCATTAG+AGG | + | chr1_1:60214009-60214028 | None:intergenic | 35.0% | |
| ATATGAAAGAGCGATATTGC+GGG | - | chr1_1:60214036-60214055 | Msa0033050:CDS | 35.0% | |
| ACGTTACAATTGTCCATTCA+AGG | - | chr1_1:60214077-60214096 | Msa0033050:intron | 35.0% | |
| CGTTACAATTGTCCATTCAA+GGG | - | chr1_1:60214078-60214097 | Msa0033050:intron | 35.0% | |
| ! | TTAAGTTCTAACAAGACTGC+TGG | - | chr1_1:60214176-60214195 | Msa0033050:intron | 35.0% |
| GGGTAAAAACTTGAAGAATC+AGG | + | chr1_1:60214234-60214253 | None:intergenic | 35.0% | |
| CAAAAATGTTGTTAGCTAGC+GGG | + | chr1_1:60214254-60214273 | None:intergenic | 35.0% | |
| ! | TTCTACACCCTTTTTAACCA+AGG | + | chr1_1:60214426-60214445 | None:intergenic | 35.0% |
| ATCTTTGTTGGATACACAGA+AGG | - | chr1_1:60214545-60214564 | Msa0033050:intron | 35.0% | |
| ACACAGAAGGACAAAACAAT+TGG | - | chr1_1:60214558-60214577 | Msa0033050:intron | 35.0% | |
| AGAAGGACAAAACAATTGGA+AGG | - | chr1_1:60214562-60214581 | Msa0033050:intron | 35.0% | |
| GCCAATCAAAATTCGATGTT+TGG | - | chr1_1:60214611-60214630 | Msa0033050:intron | 35.0% | |
| !! | GCCAAACATCGAATTTTGAT+TGG | + | chr1_1:60214615-60214634 | None:intergenic | 35.0% |
| CTCAAAACTCATGAATCACA+CGG | - | chr1_1:60214639-60214658 | Msa0033050:intron | 35.0% | |
| TCAAAACTCATGAATCACAC+GGG | - | chr1_1:60214640-60214659 | Msa0033050:intron | 35.0% | |
| TGAATTCAAAGGAAGATCAG+GGG | + | chr1_1:60214860-60214879 | None:intergenic | 35.0% | |
| GTGAATTCAAAGGAAGATCA+GGG | + | chr1_1:60214861-60214880 | None:intergenic | 35.0% | |
| AGTGAATTCAAAGGAAGATC+AGG | + | chr1_1:60214862-60214881 | None:intergenic | 35.0% | |
| TTACATGTCTTTGACTGCAA+AGG | + | chr1_1:60214887-60214906 | None:intergenic | 35.0% | |
| !! | TATGAGTAAACTTTGAGGTC+AGG | + | chr1_1:60214953-60214972 | None:intergenic | 35.0% |
| TGGATTTGGAAATCCTGATT+GGG | - | chr1_1:60215070-60215089 | Msa0033050:CDS | 35.0% | |
| ! | TTGTGTTGGTAAAACTGTCA+TGG | - | chr1_1:60215160-60215179 | Msa0033050:intron | 35.0% |
| ! | AGGTTCAGCTTTTCTTTTGT+TGG | - | chr1_1:60215197-60215216 | Msa0033050:intron | 35.0% |
| TGAATGATGGTTTATGCTCA+CGG | - | chr1_1:60215320-60215339 | Msa0033050:CDS | 35.0% | |
| CTAATTCTCACTGAAGAAGT+AGG | - | chr1_1:60215498-60215517 | Msa0033050:CDS | 35.0% | |
| TTTGAATCTTATCACAAGGG+TGG | - | chr1_1:60215625-60215644 | Msa0033050:intron | 35.0% | |
| TCTTCTGATTATTAACCGAG+TGG | + | chr1_1:60215977-60215996 | None:intergenic | 35.0% | |
| CATTGGAACAACTTCTGATT+TGG | + | chr1_1:60216159-60216178 | None:intergenic | 35.0% | |
| CAAATCAGAAGTTGTTCCAA+TGG | - | chr1_1:60216157-60216176 | Msa0033050:intron | 35.0% | |
| ! | GTAATAATCCGCAATTTTGG+TGG | - | chr1_1:60216201-60216220 | Msa0033050:intron | 35.0% |
| TAATAGAGCCACCAAAATTG+CGG | + | chr1_1:60216212-60216231 | None:intergenic | 35.0% | |
| ! | TTGTGAAGCTGCATTTTCAA+AGG | + | chr1_1:60216511-60216530 | None:intergenic | 35.0% |
| CCAACTGCACTTAAAATCTT+TGG | + | chr1_1:60216606-60216625 | None:intergenic | 35.0% | |
| !! | CCAAAGATTTTAAGTGCAGT+TGG | - | chr1_1:60216603-60216622 | Msa0033050:intron | 35.0% |
| TCTGCAATGATAATCTGAGT+AGG | + | chr1_1:60216669-60216688 | None:intergenic | 35.0% | |
| TACTCAGATTATCATTGCAG+AGG | - | chr1_1:60216668-60216687 | Msa0033050:intron | 35.0% | |
| ATTCGTGAAACTACATCGAA+AGG | + | chr1_1:60216717-60216736 | None:intergenic | 35.0% | |
| AAAGCAGTACAGAAGTTGTA+TGG | - | chr1_1:60216744-60216763 | Msa0033050:intron | 35.0% | |
| CTACTGCAGATGGTATATTA+AGG | - | chr1_1:60216927-60216946 | Msa0033050:intron | 35.0% | |
| ! | GTGATGGAATGTTGTATACT+TGG | + | chr1_1:60217027-60217046 | None:intergenic | 35.0% |
| AGTATACAACATTCCATCAC+TGG | - | chr1_1:60217027-60217046 | Msa0033050:intron | 35.0% | |
| AGTCATCTTTGCTGAAGTTA+GGG | + | chr1_1:60217106-60217125 | None:intergenic | 35.0% | |
| AAGTCATCTTTGCTGAAGTT+AGG | + | chr1_1:60217107-60217126 | None:intergenic | 35.0% | |
| AATGCAGTCAAACCTGATTT+AGG | - | chr1_1:60217236-60217255 | Msa0033050:intron | 35.0% | |
| ATGCTCTTACTTCTCTTCTT+GGG | - | chr1_1:60217348-60217367 | Msa0033050:intron | 35.0% | |
| TCGTGAAAATGGTTGCATAA+AGG | + | chr1_1:60217729-60217748 | None:intergenic | 35.0% | |
| TTTGTTTGTAGTTTAGGTGG+AGG | + | chr1_1:60217931-60217950 | None:intergenic | 35.0% | |
| ! | TTTAGCCTTCTGTCAATTGT+TGG | - | chr1_1:60217985-60218004 | Msa0033050:intron | 35.0% |
| AAACTCCAACAATTGACAGA+AGG | + | chr1_1:60217993-60218012 | None:intergenic | 35.0% | |
| AGATCATTATACATCCCTAG+TGG | + | chr1_1:60218123-60218142 | None:intergenic | 35.0% | |
| CTTTGCAGCAGAAATAGGTT+AGG | - | chr1_1:60211758-60211777 | Msa0033050:three_prime_UTR | 40.0% | |
| ATAGGTTAGGATTAGAGCGA+TGG | - | chr1_1:60211771-60211790 | Msa0033050:three_prime_UTR | 40.0% | |
| CAAACGGAATCATGCGAATT+GGG | + | chr1_1:60211814-60211833 | None:intergenic | 40.0% | |
| AGGTAGGAAGGTTGAATGAA+GGG | + | chr1_1:60211853-60211872 | None:intergenic | 40.0% | |
| ATGTAAACAGTGATCGAGGT+AGG | + | chr1_1:60211869-60211888 | None:intergenic | 40.0% | |
| ! | GCTTCAATTGCATTTTACGC+TGG | - | chr1_1:60211896-60211915 | Msa0033050:three_prime_UTR | 40.0% |
| CATTTAACAGAAGAAGGTGG+AGG | + | chr1_1:60211955-60211974 | None:intergenic | 40.0% | |
| TGTTAAATGCCCCCTTTGTA+AGG | - | chr1_1:60211966-60211985 | Msa0033050:CDS | 40.0% | |
| GGCTTCAAACTTGGTTAAGA+CGG | - | chr1_1:60212498-60212517 | Msa0033050:intron | 40.0% | |
| GCTTCAAACTTGGTTAAGAC+GGG | - | chr1_1:60212499-60212518 | Msa0033050:intron | 40.0% | |
| CACATGTTTGACTACATTGG+TGG | + | chr1_1:60212726-60212745 | None:intergenic | 40.0% | |
| !! | GTGATTTAAGTTGGAGCAGT+AGG | - | chr1_1:60212743-60212762 | Msa0033050:intron | 40.0% |
| TGTAGCACGATTCGTAAGAT+AGG | - | chr1_1:60212793-60212812 | Msa0033050:intron | 40.0% | |
| GTAGCACGATTCGTAAGATA+GGG | - | chr1_1:60212794-60212813 | Msa0033050:intron | 40.0% | |
| !! | TCAGGATAGAGTTTGCTAAC+AGG | + | chr1_1:60212937-60212956 | None:intergenic | 40.0% |
| ACCTTTGTGAAATTGCAGCA+CGG | - | chr1_1:60212978-60212997 | Msa0033050:intron | 40.0% | |
| GATCATACAATCCTATGACC+CGG | - | chr1_1:60213022-60213041 | Msa0033050:intron | 40.0% | |
| CGTTAGGAATTCACATCGAT+TGG | + | chr1_1:60213109-60213128 | None:intergenic | 40.0% | |
| TAATCTATAGGAGGAGGATG+TGG | - | chr1_1:60213478-60213497 | Msa0033050:CDS | 40.0% | |
| AGAACCTGAAAAGAAACAGG+AGG | - | chr1_1:60213674-60213693 | Msa0033050:intron | 40.0% | |
| !! | AACTCCTCCTGTTTCTTTTC+AGG | + | chr1_1:60213681-60213700 | None:intergenic | 40.0% |
| TAATGGGATTGCTCCTCTAA+TGG | - | chr1_1:60213993-60214012 | Msa0033050:CDS | 40.0% | |
| CAATTGTAACGTAGCTAGAG+AGG | + | chr1_1:60214069-60214088 | None:intergenic | 40.0% | |
| GGTGTAGAAAACCAAGTGTT+TGG | - | chr1_1:60214437-60214456 | Msa0033050:intron | 40.0% | |
| ! | CGTGTGATTCATGAGTTTTG+AGG | + | chr1_1:60214641-60214660 | None:intergenic | 40.0% |
| AACCCACAAAACAAGTGAAG+AGG | - | chr1_1:60214717-60214736 | Msa0033050:intron | 40.0% | |
| !!! | TGCCTCTTCACTTGTTTTGT+GGG | + | chr1_1:60214722-60214741 | None:intergenic | 40.0% |
| GCAAAGGTGAGTGAATTCAA+AGG | + | chr1_1:60214871-60214890 | None:intergenic | 40.0% | |
| ! | AAAGGGTATGTAGCTGGATT+TGG | - | chr1_1:60215056-60215075 | Msa0033050:CDS | 40.0% |
| CTGGATTTGGAAATCCTGAT+TGG | - | chr1_1:60215069-60215088 | Msa0033050:CDS | 40.0% | |
| ! | TTCTACTGCTCCAACAGTTT+TGG | - | chr1_1:60215115-60215134 | Msa0033050:intron | 40.0% |
| ! | GACAGTTTTACCAACACAAG+TGG | + | chr1_1:60215159-60215178 | None:intergenic | 40.0% |
| TCATGGATGAAATGGCTTAC+AGG | - | chr1_1:60215177-60215196 | Msa0033050:intron | 40.0% | |
| GTAGGTTATGTTGAAAGGAC+AGG | - | chr1_1:60215516-60215535 | Msa0033050:CDS | 40.0% | |
| TATAACACAGTACTCTGCTC+TGG | - | chr1_1:60215786-60215805 | Msa0033050:intron | 40.0% | |
| TCTTCTGCACAAGGATTTCT+AGG | + | chr1_1:60215846-60215865 | None:intergenic | 40.0% | |
| AAGCTTGTGGATTTCTCTCT+TGG | - | chr1_1:60215915-60215934 | Msa0033050:intron | 40.0% | |
| !!! | TAGTTGTTTTGAGCACCACT+CGG | - | chr1_1:60215959-60215978 | Msa0033050:intron | 40.0% |
| ATCATAGGAACTGATACAGG+AGG | - | chr1_1:60216068-60216087 | Msa0033050:intron | 40.0% | |
| AAAATCCCACAATACGATGC+AGG | + | chr1_1:60216107-60216126 | None:intergenic | 40.0% | |
| ! | GCATCGTATTGTGGGATTTT+CGG | - | chr1_1:60216107-60216126 | Msa0033050:intron | 40.0% |
| GTATCAAAACTCTGTGCCAT+TGG | + | chr1_1:60216176-60216195 | None:intergenic | 40.0% | |
| !! | GCACAGAGTTTTGATACTGT+TGG | - | chr1_1:60216179-60216198 | Msa0033050:intron | 40.0% |
| GGGTGAATTCATTGTTCTAG+AGG | - | chr1_1:60216245-60216264 | Msa0033050:intron | 40.0% | |
| TCGCATATTCACATCTAGGA+TGG | - | chr1_1:60216568-60216587 | Msa0033050:intron | 40.0% | |
| !! | ACATCTAGGATGGTTTGCTA+GGG | - | chr1_1:60216578-60216597 | Msa0033050:intron | 40.0% |
| CTCATGAAATGCTTCAAACC+CGG | + | chr1_1:60216989-60217008 | None:intergenic | 40.0% | |
| ATCTTTGCTGAAGTTAGGGA+TGG | + | chr1_1:60217102-60217121 | None:intergenic | 40.0% | |
| AGTCAAACCTGATTTAGGTC+CGG | - | chr1_1:60217241-60217260 | Msa0033050:intron | 40.0% | |
| ATTCTCCTTAGTTGTGCGTA+GGG | + | chr1_1:60217291-60217310 | None:intergenic | 40.0% | |
| TATTCTCCTTAGTTGTGCGT+AGG | + | chr1_1:60217292-60217311 | None:intergenic | 40.0% | |
| GATGCTCTTACTTCTCTTCT+TGG | - | chr1_1:60217347-60217366 | Msa0033050:intron | 40.0% | |
| TGCTCTTACTTCTCTTCTTG+GGG | - | chr1_1:60217349-60217368 | Msa0033050:intron | 40.0% | |
| ! | ACTTGGAAATTTTTCGCGCT+AGG | - | chr1_1:60217959-60217978 | Msa0033050:intron | 40.0% |
| ! | CTTGGAAATTTTTCGCGCTA+GGG | - | chr1_1:60217960-60217979 | Msa0033050:intron | 40.0% |
| CTGTCAATTGTTGGAGTTTC+TGG | - | chr1_1:60217994-60218013 | Msa0033050:intron | 40.0% | |
| !! | TGGAGTTTCTGGATTTTGTC+AGG | - | chr1_1:60218005-60218024 | Msa0033050:intron | 40.0% |
| TGAATTCTTGCTTCACCTTG+TGG | - | chr1_1:60218182-60218201 | Msa0033050:intron | 40.0% | |
| AATCATCTTGTCAGCTTTGC+TGG | + | chr1_1:60218240-60218259 | None:intergenic | 40.0% | |
| !! | ATTATCTTGCTCGGTGCACT+GGG | + | chr1_1:60211733-60211752 | None:intergenic | 45.0% |
| !! | AATTATCTTGCTCGGTGCAC+TGG | + | chr1_1:60211734-60211753 | None:intergenic | 45.0% |
| GCAAACGGAATCATGCGAAT+TGG | + | chr1_1:60211815-60211834 | None:intergenic | 45.0% | |
| TCCAAGGCAAATTGGGCAAA+CGG | + | chr1_1:60211830-60211849 | None:intergenic | 45.0% | |
| TGAAGGGTCCAAGGCAAATT+GGG | + | chr1_1:60211837-60211856 | None:intergenic | 45.0% | |
| ATGAAGGGTCCAAGGCAAAT+TGG | + | chr1_1:60211838-60211857 | None:intergenic | 45.0% | |
| AAGGTTGAATGAAGGGTCCA+AGG | + | chr1_1:60211846-60211865 | None:intergenic | 45.0% | |
| GAGGTAGGAAGGTTGAATGA+AGG | + | chr1_1:60211854-60211873 | None:intergenic | 45.0% | |
| AAACAGTGATCGAGGTAGGA+AGG | + | chr1_1:60211865-60211884 | None:intergenic | 45.0% | |
| ! | CGCTGGATCAAAGTTGTTTC+TGG | - | chr1_1:60211913-60211932 | Msa0033050:three_prime_UTR | 45.0% |
| GGGCATTTAACAGAAGAAGG+TGG | + | chr1_1:60211958-60211977 | None:intergenic | 45.0% | |
| !! | AGGGGGCATTTAACAGAAGA+AGG | + | chr1_1:60211961-60211980 | None:intergenic | 45.0% |
| GGAAATTCAAGCTCTTACCC+AGG | - | chr1_1:60212520-60212539 | Msa0033050:intron | 45.0% | |
| !! | GGCCATTGGAGTTGTTTCTA+TGG | + | chr1_1:60212888-60212907 | None:intergenic | 45.0% |
| ! | GTAAAAGAAACGAGTTGGGC+TGG | + | chr1_1:60212909-60212928 | None:intergenic | 45.0% |
| ACCGTGCTGCAATTTCACAA+AGG | + | chr1_1:60212982-60213001 | None:intergenic | 45.0% | |
| CTTGGTACTCAGTGTAGTCA+AGG | + | chr1_1:60213055-60213074 | None:intergenic | 45.0% | |
| CTTGACTACACTGAGTACCA+AGG | - | chr1_1:60213053-60213072 | Msa0033050:intron | 45.0% | |
| TGTCCACCATATCTTTGGTG+TGG | - | chr1_1:60213508-60213527 | Msa0033050:CDS | 45.0% | |
| TGACCACACCAAAGATATGG+TGG | + | chr1_1:60213514-60213533 | None:intergenic | 45.0% | |
| ! | GAAACATCAGTGTTTTCCCC+TGG | + | chr1_1:60213849-60213868 | None:intergenic | 45.0% |
| AAAGAGCGATATTGCGGGTT+TGG | - | chr1_1:60214041-60214060 | Msa0033050:CDS | 45.0% | |
| ! | AGTTCTAACAAGACTGCTGG+AGG | - | chr1_1:60214179-60214198 | Msa0033050:intron | 45.0% |
| TCTATGCGACATGAAACCGT+TGG | - | chr1_1:60214351-60214370 | Msa0033050:intron | 45.0% | |
| !! | TGTGTCACTGACTTCTGGAT+TGG | - | chr1_1:60214589-60214608 | Msa0033050:intron | 45.0% |
| !!! | GTGCCTCTTCACTTGTTTTG+TGG | + | chr1_1:60214723-60214742 | None:intergenic | 45.0% |
| GCACTGCTGTTATCATCTGT+GGG | - | chr1_1:60214739-60214758 | Msa0033050:intron | 45.0% | |
| ! | CTCAGACTATGGAGCATTCA+TGG | - | chr1_1:60214804-60214823 | Msa0033050:intron | 45.0% |
| AGATCAGGGGAAGAAGAAGT+TGG | + | chr1_1:60214847-60214866 | None:intergenic | 45.0% | |
| ! | GATGTGAAAGGGTATGTAGC+TGG | - | chr1_1:60215050-60215069 | Msa0033050:CDS | 45.0% |
| TTGGAAATCCTGATTGGGCA+AGG | - | chr1_1:60215075-60215094 | Msa0033050:CDS | 45.0% | |
| CTCTGCTCTGGCAGTATAAA+CGG | - | chr1_1:60215798-60215817 | Msa0033050:intron | 45.0% | |
| TAGAAGATCCTCCAGGTACT+CGG | + | chr1_1:60215869-60215888 | None:intergenic | 45.0% | |
| TAGGATACTCTTCTGCTCCA+TGG | - | chr1_1:60216018-60216037 | Msa0033050:intron | 45.0% | |
| AGGATACTCTTCTGCTCCAT+GGG | - | chr1_1:60216019-60216038 | Msa0033050:intron | 45.0% | |
| AGAGTTCCTGCATCGTATTG+TGG | - | chr1_1:60216098-60216117 | Msa0033050:intron | 45.0% | |
| GAGTTCCTGCATCGTATTGT+GGG | - | chr1_1:60216099-60216118 | Msa0033050:intron | 45.0% | |
| ! | TTCGGTTTTCGTCCTTCTCA+TGG | - | chr1_1:60216125-60216144 | Msa0033050:intron | 45.0% |
| TTGGAGATTCTGCCATGAGA+AGG | + | chr1_1:60216140-60216159 | None:intergenic | 45.0% | |
| !! | CACATCTAGGATGGTTTGCT+AGG | - | chr1_1:60216577-60216596 | Msa0033050:intron | 45.0% |
| GCAGTACAGAAGTTGTATGG+AGG | - | chr1_1:60216747-60216766 | Msa0033050:intron | 45.0% | |
| GCTCTATACACTACTGCAGA+TGG | - | chr1_1:60216917-60216936 | Msa0033050:intron | 45.0% | |
| AATCCTTGGTGAGTACGTGA+AGG | - | chr1_1:60216955-60216974 | Msa0033050:intron | 45.0% | |
| ATGCTTCAAACCCGGAACTT+TGG | + | chr1_1:60216981-60217000 | None:intergenic | 45.0% | |
| !! | ATACCTCTGAAGCAATCGCA+TGG | + | chr1_1:60217068-60217087 | None:intergenic | 45.0% |
| ! | CTGCATTGATCCATTCACCA+TGG | + | chr1_1:60217223-60217242 | None:intergenic | 45.0% |
| GTCAAACCTGATTTAGGTCC+GGG | - | chr1_1:60217242-60217261 | Msa0033050:intron | 45.0% | |
| GAAATTCCCGGACCTAAATC+AGG | + | chr1_1:60217251-60217270 | None:intergenic | 45.0% | |
| !! | GATACGCGTTCTGAAATTCC+CGG | + | chr1_1:60217263-60217282 | None:intergenic | 45.0% |
| GTTGTTACTGTGTGTGTGTG+TGG | - | chr1_1:60218027-60218046 | Msa0033050:CDS | 45.0% | |
| TTGCAGGTAAGCATACCACT+AGG | - | chr1_1:60218105-60218124 | Msa0033050:intron | 45.0% | |
| TGCAGGTAAGCATACCACTA+GGG | - | chr1_1:60218106-60218125 | Msa0033050:intron | 45.0% | |
| GAATTCATCTGCACCATTCC+TGG | + | chr1_1:60218169-60218188 | None:intergenic | 45.0% | |
| !! | TTATCTTGCTCGGTGCACTG+GGG | + | chr1_1:60211732-60211751 | None:intergenic | 50.0% |
| TCCGTTTGCCCAATTTGCCT+TGG | - | chr1_1:60211826-60211845 | Msa0033050:three_prime_UTR | 50.0% | |
| ! | AAGAAGGTGGAGGAGTATGG+TGG | + | chr1_1:60211945-60211964 | None:intergenic | 50.0% |
| CAGAAGAAGGTGGAGGAGTA+TGG | + | chr1_1:60211948-60211967 | None:intergenic | 50.0% | |
| CCACGCAACCTACTCAACAA+AGG | + | chr1_1:60212418-60212437 | None:intergenic | 50.0% | |
| CCTTTGTTGAGTAGGTTGCG+TGG | - | chr1_1:60212415-60212434 | Msa0033050:intron | 50.0% | |
| GTGAAATTGCAGCACGGTTG+AGG | - | chr1_1:60212984-60213003 | Msa0033050:intron | 50.0% | |
| TGTAGTCAAGGTCGAATGCC+GGG | + | chr1_1:60213043-60213062 | None:intergenic | 50.0% | |
| GTGTAGTCAAGGTCGAATGC+CGG | + | chr1_1:60213044-60213063 | None:intergenic | 50.0% | |
| AAAAGGCCTAGCTGCTTCAG+AGG | + | chr1_1:60213715-60213734 | None:intergenic | 50.0% | |
| ! | TGAAGCAGCTAGGCCTTTTC+TGG | - | chr1_1:60213716-60213735 | Msa0033050:intron | 50.0% |
| ! | GAAGCAGCTAGGCCTTTTCT+GGG | - | chr1_1:60213717-60213736 | Msa0033050:intron | 50.0% |
| TCGGTTCTTGCTCCCAGAAA+AGG | + | chr1_1:60213732-60213751 | None:intergenic | 50.0% | |
| GATTAGGATGGAGCTCACCA+GGG | - | chr1_1:60213829-60213848 | Msa0033050:intron | 50.0% | |
| ATTAGGATGGAGCTCACCAG+GGG | - | chr1_1:60213830-60213849 | Msa0033050:intron | 50.0% | |
| !! | GTGACTGTGTCACTGACTTC+TGG | - | chr1_1:60214584-60214603 | Msa0033050:intron | 50.0% |
| GGCACTGCTGTTATCATCTG+TGG | - | chr1_1:60214738-60214757 | Msa0033050:intron | 50.0% | |
| CTGCTGTTATCATCTGTGGG+TGG | - | chr1_1:60214742-60214761 | Msa0033050:intron | 50.0% | |
| ACAGCCTCAGACTCAGACTA+TGG | - | chr1_1:60214793-60214812 | Msa0033050:intron | 50.0% | |
| TGCTCCATAGTCTGAGTCTG+AGG | + | chr1_1:60214800-60214819 | None:intergenic | 50.0% | |
| TCAGGGGAAGAAGAAGTTGG+TGG | + | chr1_1:60214844-60214863 | None:intergenic | 50.0% | |
| TGATGAGTCCTTGCCCAATC+AGG | + | chr1_1:60215086-60215105 | None:intergenic | 50.0% | |
| TGATTGGGCAAGGACTCATC+AGG | - | chr1_1:60215085-60215104 | Msa0033050:CDS | 50.0% | |
| CTCAGGACAGCCAAAACTGT+TGG | + | chr1_1:60215128-60215147 | None:intergenic | 50.0% | |
| GTACCTGGAGGATCTTCTAG+TGG | - | chr1_1:60215870-60215889 | Msa0033050:intron | 50.0% | |
| ! | TGCAGTTGGTGCAAAGCTTG+TGG | - | chr1_1:60215902-60215921 | Msa0033050:intron | 50.0% |
| GGTCTAATGTGTGTGATGCG+TGG | + | chr1_1:60216648-60216667 | None:intergenic | 50.0% | |
| GTACGTGAAGGCCAAAGTTC+CGG | - | chr1_1:60216967-60216986 | Msa0033050:intron | 50.0% | |
| TACGTGAAGGCCAAAGTTCC+GGG | - | chr1_1:60216968-60216987 | Msa0033050:intron | 50.0% | |
| ! | CTAGAAAGTGCAGCCAGTGA+TGG | + | chr1_1:60217043-60217062 | None:intergenic | 50.0% |
| AGATGCCCTACGCACAACTA+AGG | - | chr1_1:60217283-60217302 | Msa0033050:intron | 50.0% | |
| TGTAGTTTAGGTGGAGGACC+TGG | + | chr1_1:60217925-60217944 | None:intergenic | 50.0% | |
| TCTCCCTGCATCAGTTTCTC+TGG | - | chr1_1:60218140-60218159 | Msa0033050:intron | 50.0% | |
| CCACCAGAGAAACTGATGCA+GGG | + | chr1_1:60218146-60218165 | None:intergenic | 50.0% | |
| !! | AAACGAGTTGGGCTGGCCAT+TGG | + | chr1_1:60212902-60212921 | None:intergenic | 55.0% |
| AAGGTCGAATGCCGGGTCAT+AGG | + | chr1_1:60213036-60213055 | None:intergenic | 55.0% | |
| !! | TGTCTGCCTCTGAAGCAGCT+AGG | - | chr1_1:60213706-60213725 | Msa0033050:intron | 55.0% |
| CGATTAGGATGGAGCTCACC+AGG | - | chr1_1:60213828-60213847 | Msa0033050:intron | 55.0% | |
| !!! | GTTTTGGCTGTCCTGAGTGC+AGG | - | chr1_1:60215131-60215150 | Msa0033050:intron | 55.0% |
| !! | AGTGCAGGTGCCACTTGTGT+TGG | - | chr1_1:60215146-60215165 | Msa0033050:intron | 55.0% |
| GGTACTCGGTCTTCTGCACA+AGG | + | chr1_1:60215855-60215874 | None:intergenic | 55.0% | |
| TGTGCAGAAGACCGAGTACC+TGG | - | chr1_1:60215855-60215874 | Msa0033050:intron | 55.0% | |
| GAGCCACTAGAAGATCCTCC+AGG | + | chr1_1:60215876-60215895 | None:intergenic | 55.0% | |
| ! | AGTGGCTCTGCTGTTGCAGT+TGG | - | chr1_1:60215888-60215907 | Msa0033050:intron | 55.0% |
| TGGCCTTCACGTACTCACCA+AGG | + | chr1_1:60216961-60216980 | None:intergenic | 55.0% | |
| GTGCCATGCGATTGCTTCAG+AGG | - | chr1_1:60217062-60217081 | Msa0033050:intron | 55.0% | |
| CTCATGATCCCCACAGTTCC+AGG | - | chr1_1:60217904-60217923 | Msa0033050:intron | 55.0% | |
| CCCTGCATCAGTTTCTCTGG+TGG | - | chr1_1:60218143-60218162 | Msa0033050:intron | 55.0% | |
| GCCACCAGAGAAACTGATGC+AGG | + | chr1_1:60218147-60218166 | None:intergenic | 55.0% | |
| CATCAGTTTCTCTGGTGGCC+AGG | - | chr1_1:60218148-60218167 | Msa0033050:intron | 55.0% | |
| GTTTCTCTGGTGGCCAGGAA+TGG | - | chr1_1:60218153-60218172 | Msa0033050:intron | 55.0% | |
| GCAGCACGGTTGAGGAGTCA+TGG | - | chr1_1:60212992-60213011 | Msa0033050:intron | 60.0% | |
| CACAAGTGGCACCTGCACTC+AGG | + | chr1_1:60215145-60215164 | None:intergenic | 60.0% | |
| GCAGAAGACCGAGTACCTGG+AGG | - | chr1_1:60215858-60215877 | Msa0033050:intron | 60.0% | |
| GTGGAGGACCTGGAACTGTG+GGG | + | chr1_1:60217915-60217934 | None:intergenic | 60.0% | |
| GGTGGAGGACCTGGAACTGT+GGG | + | chr1_1:60217916-60217935 | None:intergenic | 60.0% | |
| AGGTGGAGGACCTGGAACTG+TGG | + | chr1_1:60217917-60217936 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 60211666 | 60218504 | 60211666 | ID=Msa0033050;Name=Msa0033050 |
| chr1_1 | mRNA | 60211666 | 60218504 | 60211666 | ID=Msa0033050-mRNA-1;Parent=Msa0033050;Name=Msa0033050-mRNA-1;_AED=0.19;_eAED=0.19;_QI=124|0.86|0.81|1|1|1|16|271|731 |
| chr1_1 | exon | 60211666 | 60212059 | 60211666 | ID=Msa0033050-mRNA-1:exon:18884;Parent=Msa0033050-mRNA-1 |
| chr1_1 | exon | 60212144 | 60212278 | 60212144 | ID=Msa0033050-mRNA-1:exon:18883;Parent=Msa0033050-mRNA-1 |
| chr1_1 | exon | 60212800 | 60212968 | 60212800 | ID=Msa0033050-mRNA-1:exon:18882;Parent=Msa0033050-mRNA-1 |
| chr1_1 | exon | 60213087 | 60213234 | 60213087 | ID=Msa0033050-mRNA-1:exon:18881;Parent=Msa0033050-mRNA-1 |
| chr1_1 | exon | 60213402 | 60213584 | 60213402 | ID=Msa0033050-mRNA-1:exon:18880;Parent=Msa0033050-mRNA-1 |
| chr1_1 | exon | 60213970 | 60214095 | 60213970 | ID=Msa0033050-mRNA-1:exon:18879;Parent=Msa0033050-mRNA-1 |
| chr1_1 | exon | 60214234 | 60214358 | 60214234 | ID=Msa0033050-mRNA-1:exon:18878;Parent=Msa0033050-mRNA-1 |
| chr1_1 | exon | 60214972 | 60215124 | 60214972 | ID=Msa0033050-mRNA-1:exon:18877;Parent=Msa0033050-mRNA-1 |
| chr1_1 | exon | 60215268 | 60215388 | 60215268 | ID=Msa0033050-mRNA-1:exon:18876;Parent=Msa0033050-mRNA-1 |
| chr1_1 | exon | 60215464 | 60215606 | 60215464 | ID=Msa0033050-mRNA-1:exon:18875;Parent=Msa0033050-mRNA-1 |
| chr1_1 | exon | 60216260 | 60216517 | 60216260 | ID=Msa0033050-mRNA-1:exon:18874;Parent=Msa0033050-mRNA-1 |
| chr1_1 | exon | 60216621 | 60216682 | 60216621 | ID=Msa0033050-mRNA-1:exon:18873;Parent=Msa0033050-mRNA-1 |
| chr1_1 | exon | 60217629 | 60217741 | 60217629 | ID=Msa0033050-mRNA-1:exon:18872;Parent=Msa0033050-mRNA-1 |
| chr1_1 | exon | 60217862 | 60217917 | 60217862 | ID=Msa0033050-mRNA-1:exon:18871;Parent=Msa0033050-mRNA-1 |
| chr1_1 | exon | 60218014 | 60218096 | 60218014 | ID=Msa0033050-mRNA-1:exon:18870;Parent=Msa0033050-mRNA-1 |
| chr1_1 | exon | 60218183 | 60218504 | 60218183 | ID=Msa0033050-mRNA-1:exon:18869;Parent=Msa0033050-mRNA-1 |
| chr1_1 | five_prime_UTR | 60218381 | 60218504 | 60218381 | ID=Msa0033050-mRNA-1:five_prime_utr;Parent=Msa0033050-mRNA-1 |
| chr1_1 | CDS | 60218183 | 60218380 | 60218183 | ID=Msa0033050-mRNA-1:cds;Parent=Msa0033050-mRNA-1 |
| chr1_1 | CDS | 60218014 | 60218096 | 60218014 | ID=Msa0033050-mRNA-1:cds;Parent=Msa0033050-mRNA-1 |
| chr1_1 | CDS | 60217862 | 60217917 | 60217862 | ID=Msa0033050-mRNA-1:cds;Parent=Msa0033050-mRNA-1 |
| chr1_1 | CDS | 60217629 | 60217741 | 60217629 | ID=Msa0033050-mRNA-1:cds;Parent=Msa0033050-mRNA-1 |
| chr1_1 | CDS | 60216621 | 60216682 | 60216621 | ID=Msa0033050-mRNA-1:cds;Parent=Msa0033050-mRNA-1 |
| chr1_1 | CDS | 60216260 | 60216517 | 60216260 | ID=Msa0033050-mRNA-1:cds;Parent=Msa0033050-mRNA-1 |
| chr1_1 | CDS | 60215464 | 60215606 | 60215464 | ID=Msa0033050-mRNA-1:cds;Parent=Msa0033050-mRNA-1 |
| chr1_1 | CDS | 60215268 | 60215388 | 60215268 | ID=Msa0033050-mRNA-1:cds;Parent=Msa0033050-mRNA-1 |
| chr1_1 | CDS | 60214972 | 60215124 | 60214972 | ID=Msa0033050-mRNA-1:cds;Parent=Msa0033050-mRNA-1 |
| chr1_1 | CDS | 60214234 | 60214358 | 60214234 | ID=Msa0033050-mRNA-1:cds;Parent=Msa0033050-mRNA-1 |
| chr1_1 | CDS | 60213970 | 60214095 | 60213970 | ID=Msa0033050-mRNA-1:cds;Parent=Msa0033050-mRNA-1 |
| chr1_1 | CDS | 60213402 | 60213584 | 60213402 | ID=Msa0033050-mRNA-1:cds;Parent=Msa0033050-mRNA-1 |
| chr1_1 | CDS | 60213087 | 60213234 | 60213087 | ID=Msa0033050-mRNA-1:cds;Parent=Msa0033050-mRNA-1 |
| chr1_1 | CDS | 60212800 | 60212968 | 60212800 | ID=Msa0033050-mRNA-1:cds;Parent=Msa0033050-mRNA-1 |
| chr1_1 | CDS | 60212144 | 60212278 | 60212144 | ID=Msa0033050-mRNA-1:cds;Parent=Msa0033050-mRNA-1 |
| chr1_1 | CDS | 60211937 | 60212059 | 60211937 | ID=Msa0033050-mRNA-1:cds;Parent=Msa0033050-mRNA-1 |
| chr1_1 | three_prime_UTR | 60211666 | 60211936 | 60211666 | ID=Msa0033050-mRNA-1:three_prime_utr;Parent=Msa0033050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
