AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0077730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077730 MtrunA17_Chr1g0187601 98.237 624 11 0 1 624 1 624 0.0 1284
Msa0077730 MtrunA17_Chr1g0167381 81.891 624 112 1 1 623 1 624 0.0 1090
Msa0077730 MtrunA17_Chr1g0183721 68.640 625 165 3 1 624 1 595 0.0 923
Msa0077730 MtrunA17_Chr3g0112341 46.654 523 253 9 79 588 136 645 3.49e-165 487
Msa0077730 MtrunA17_Chr5g0435751 45.669 508 237 7 89 589 123 598 5.22e-161 475
Msa0077730 MtrunA17_Chr1g0159741 45.155 516 253 11 91 593 141 639 1.45e-158 470
Msa0077730 MtrunA17_Chr1g0171781 41.100 618 331 9 8 614 8 603 3.21e-155 459
Msa0077730 MtrunA17_Chr7g0246701 43.704 540 271 12 92 614 102 625 2.09e-149 446
Msa0077730 MtrunA17_Chr8g0361791 40.157 635 331 15 5 624 10 610 2.76e-149 444
Msa0077730 MtrunA17_Chr8g0388881 42.910 543 275 13 89 614 96 620 8.00e-149 444
Msa0077730 MtrunA17_Chr5g0437501 44.821 502 252 9 100 588 101 590 2.26e-148 442
Msa0077730 MtrunA17_Chr5g0416991 39.938 641 336 17 1 624 1 609 7.14e-148 441
Msa0077730 MtrunA17_Chr4g0055031 39.399 632 339 15 2 617 3 606 9.92e-148 441
Msa0077730 MtrunA17_Chr8g0350391 42.802 514 267 9 91 588 105 607 1.45e-145 436
Msa0077730 MtrunA17_Chr3g0130381 41.497 588 301 14 41 614 218 776 4.96e-145 439
Msa0077730 MtrunA17_Chr1g0203741 42.647 544 276 14 90 614 91 617 8.04e-145 434
Msa0077730 MtrunA17_Chr6g0472571 41.697 554 279 12 91 623 105 635 3.54e-144 432
Msa0077730 MtrunA17_Chr3g0125511 43.289 529 269 12 99 614 232 742 5.07e-144 436
Msa0077730 MtrunA17_Chr7g0246681 41.852 540 289 9 82 614 66 587 6.50e-144 430
Msa0077730 MtrunA17_Chr8g0369481 38.523 623 325 11 11 617 11 591 2.13e-143 429
Msa0077730 MtrunA17_Chr8g0384431 43.849 504 256 11 100 589 298 788 3.70e-142 432
Msa0077730 MtrunA17_Chr3g0092501 39.002 641 335 17 2 623 3 606 3.76e-141 424
Msa0077730 MtrunA17_Chr8g0350351 41.132 530 283 10 94 614 91 600 5.12e-141 423
Msa0077730 MtrunA17_Chr3g0113981 43.750 496 259 8 100 590 175 655 3.79e-139 421
Msa0077730 MtrunA17_Chr7g0214551 42.992 528 268 13 91 598 43 557 5.91e-139 417
Msa0077730 MtrunA17_Chr5g0409411 37.760 625 332 12 10 619 13 595 1.63e-138 416
Msa0077730 MtrunA17_Chr8g0372471 42.938 531 277 12 71 590 358 873 2.47e-138 425
Msa0077730 MtrunA17_Chr5g0426281 34.873 628 354 12 9 614 76 670 2.69e-121 374
Msa0077730 MtrunA17_Chr3g0115931 36.182 550 314 11 89 614 152 688 5.93e-117 363
Msa0077730 MtrunA17_Chr1g0155141 35.472 530 303 11 93 614 201 699 2.33e-103 328
Msa0077730 MtrunA17_Chr5g0404771 50.391 256 111 5 99 353 328 568 9.90e-80 263
Msa0077730 MtrunA17_Chr4g0043121 32.082 293 189 4 89 375 84 372 9.24e-56 195
Msa0077730 MtrunA17_Chr5g0404761 40.996 261 133 9 341 587 1 254 2.07e-55 189
Msa0077730 MtrunA17_Chr4g0043131 46.199 171 74 3 445 597 2 172 1.05e-41 149
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077730 AT1G04430.1 78.288 631 122 5 1 624 1 623 0.0 1041
Msa0077730 AT1G04430.3 78.288 631 122 5 1 624 1 623 0.0 1041
Msa0077730 AT1G04430.2 78.288 631 122 5 1 624 1 623 0.0 1041
Msa0077730 AT3G23300.2 77.564 624 124 6 3 624 2 611 0.0 1004
Msa0077730 AT3G23300.1 77.564 624 124 6 3 624 2 611 0.0 1004
Msa0077730 AT4G14360.1 78.617 622 118 6 3 624 2 608 0.0 979
Msa0077730 AT4G14360.2 78.617 622 118 6 3 624 2 608 0.0 979
Msa0077730 AT5G14430.1 63.167 581 202 4 42 614 28 604 0.0 766
Msa0077730 AT5G14430.2 62.651 581 205 4 42 614 28 604 0.0 760
Msa0077730 AT2G39750.1 45.369 529 268 8 68 588 154 669 5.71e-167 493
Msa0077730 AT1G77260.1 44.241 547 279 10 60 595 108 639 4.54e-165 487
Msa0077730 AT5G06050.1 45.098 510 255 8 89 588 147 641 3.62e-164 486
Msa0077730 AT3G10200.1 45.403 533 277 8 86 614 66 588 3.11e-161 475
Msa0077730 AT5G04060.1 45.038 524 275 7 93 614 85 597 4.04e-160 472
Msa0077730 AT3G10200.2 47.292 480 241 6 86 561 66 537 8.72e-153 453
Msa0077730 AT2G45750.1 43.670 545 272 11 90 614 86 615 6.40e-152 452
Msa0077730 AT4G10440.1 43.879 531 266 13 76 588 77 593 1.90e-150 449
Msa0077730 AT1G33170.1 43.654 520 265 10 85 588 104 611 2.35e-150 449
Msa0077730 AT5G64030.1 44.821 531 261 11 100 617 308 819 5.27e-148 449
Msa0077730 AT2G34300.2 44.402 527 262 11 100 614 250 757 8.96e-148 446
Msa0077730 AT2G34300.3 44.402 527 262 11 100 614 250 757 8.96e-148 446
Msa0077730 AT2G34300.1 44.402 527 262 11 100 614 250 757 8.96e-148 446
Msa0077730 AT3G51070.1 44.234 529 263 11 99 614 380 889 1.86e-146 447
Msa0077730 AT1G26850.2 39.937 636 330 16 4 619 10 613 9.90e-146 436
Msa0077730 AT1G26850.1 39.937 636 330 16 4 619 10 613 9.90e-146 436
Msa0077730 AT1G29470.1 43.898 549 276 13 79 614 228 757 1.35e-145 441
Msa0077730 AT1G29470.2 43.898 549 276 13 79 614 228 757 1.35e-145 441
Msa0077730 AT4G19120.1 39.071 581 327 8 55 623 34 599 1.56e-145 435
Msa0077730 AT4G19120.2 39.071 581 327 8 55 623 34 599 1.56e-145 435
Msa0077730 AT4G00740.1 38.907 604 327 13 20 614 23 593 1.58e-141 424
Msa0077730 AT4G00740.2 38.907 604 327 13 20 614 23 593 1.58e-141 424
Msa0077730 AT4G00750.1 37.915 633 346 16 3 614 16 622 6.04e-141 424
Msa0077730 AT2G40280.1 44.242 495 252 11 100 588 90 566 2.10e-138 416
Msa0077730 AT3G56080.1 43.434 495 259 10 100 588 114 593 3.09e-136 411
Msa0077730 AT2G43200.2 42.804 535 270 15 91 608 91 606 1.32e-135 410
Msa0077730 AT2G43200.1 42.804 535 270 15 91 608 91 606 1.32e-135 410
Msa0077730 AT1G31850.1 35.601 632 359 12 1 617 1 599 1.36e-135 409
Msa0077730 AT1G31850.2 35.601 632 359 12 1 617 1 599 1.36e-135 409
Msa0077730 AT1G31850.4 35.601 632 359 12 1 617 1 599 1.36e-135 409
Msa0077730 AT1G31850.3 35.601 632 359 12 1 617 1 599 1.36e-135 409
Msa0077730 AT3G51070.2 47.216 449 213 9 99 534 380 817 1.59e-135 416
Msa0077730 AT4G18030.1 40.883 521 266 10 88 588 82 580 3.82e-133 404
Msa0077730 AT3G56080.2 44.789 451 229 9 100 544 114 550 2.43e-127 386
Msa0077730 AT4G19120.3 39.706 476 265 6 55 518 34 499 6.01e-119 363
Msa0077730 AT1G78240.1 35.165 546 318 10 89 611 144 676 7.55e-117 363
Msa0077730 AT1G78240.2 35.165 546 318 10 89 611 144 676 7.55e-117 363
Msa0077730 AT1G26850.3 38.867 512 266 13 4 496 10 493 1.15e-109 339
Msa0077730 AT1G13860.4 34.229 558 298 12 89 613 79 600 1.36e-109 342
Msa0077730 AT1G13860.3 34.229 558 298 12 89 613 79 600 1.36e-109 342
Msa0077730 AT1G13860.1 34.229 558 298 12 89 613 79 600 1.36e-109 342
Msa0077730 AT1G13860.5 34.229 558 298 12 89 613 79 600 1.36e-109 342
Msa0077730 AT1G19430.1 37.453 534 294 13 90 614 220 722 1.37e-105 335
Msa0077730 AT1G19430.3 37.453 534 294 13 90 614 220 722 1.37e-105 335
Msa0077730 AT2G03480.2 35.821 536 280 12 89 597 84 582 1.38e-104 329
Msa0077730 AT2G03480.1 34.791 549 301 13 89 611 84 601 6.51e-99 315
Msa0077730 AT1G13860.2 35.914 465 247 10 179 613 1 444 1.09e-95 301
Msa0077730 AT1G19430.2 34.250 400 230 11 90 480 220 595 3.36e-61 214
Msa0077730 AT2G03480.3 33.333 285 175 4 89 364 84 362 3.83e-55 194

Find 183 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAATTCTGATTTGAATTAT+TGG 0.158327 1_2:+54745426 Msa0077730:five_prime_UTR
GAAACTCGGGTCATCATATT+TGG 0.159182 1_2:+54745721 Msa0077730:CDS
CCTCCTAGATTAGCTGATTT+TGG 0.165968 1_2:+54748832 Msa0077730:CDS
TCAAGTTATTATTAAGAAAT+AGG 0.196879 1_2:+54750052 Msa0077730:three_prime_UTR
CTATCAACTGCGGATGAAAT+TGG 0.231856 1_2:+54746320 Msa0077730:CDS
TTGTGCTATTCTGTTTAGTA+TGG 0.243218 1_2:+54750264 Msa0077730:three_prime_UTR
ATGAATCTTCATCAAGTTTC+GGG 0.251904 1_2:+54745774 Msa0077730:CDS
CGATACAATAAGGAATATTA+TGG 0.266438 1_2:+54749082 Msa0077730:CDS
TGCGACGTTCAGTTGGGTTT+TGG 0.276747 1_2:+54745452 Msa0077730:five_prime_UTR
AACCGACAGTGTGAAATTTA+AGG 0.283990 1_2:-54744365 None:intergenic
AGATCCAAATTCCGATTAAA+AGG 0.289018 1_2:-54745513 None:intergenic
CTCTTAAAGACAAGGAAGTA+TGG 0.294068 1_2:+54749138 Msa0077730:CDS
TTCCTCTTTCGAGGGCAAAT+TGG 0.300813 1_2:-54747958 None:intergenic
TAGAATATGGCAAATCATTA+AGG 0.302605 1_2:+54745699 Msa0077730:CDS
TTATTGTACAGACGAAATAT+TGG 0.305003 1_2:-54750236 None:intergenic
AGACTTACAGGGAAACTCTT+TGG 0.313437 1_2:-54745824 None:intergenic
TCATCCTGAGCATATGCTTC+TGG 0.327211 1_2:-54748151 None:intergenic
ATCTTGTGGTACAGGAACTA+TGG 0.329209 1_2:+54749009 Msa0077730:intron
GGTTCATCTGCTCTAGAATA+TGG 0.329914 1_2:+54745686 Msa0077730:CDS
ATGAAGAGAATCTAAGGATA+TGG 0.338817 1_2:+54748170 Msa0077730:CDS
GGCTAACTAGTGGAAGCTTC+AGG 0.341074 1_2:+54749849 Msa0077730:CDS
GGCTGTGGTGTTGCAAGTTT+CGG 0.342008 1_2:+54747866 Msa0077730:CDS
GATGAATCTTCATCAAGTTT+CGG 0.344747 1_2:+54745773 Msa0077730:CDS
TTCGGGTTCTGACTCTGTTC+AGG 0.348361 1_2:+54749787 Msa0077730:CDS
AGCAGTTGCAACCGCAGATT+CGG 0.348674 1_2:+54749769 Msa0077730:CDS
AAAGCTAACATGGGTTCATT+TGG 0.352385 1_2:+54749110 Msa0077730:CDS
AAATCAAATCCGATACAATA+AGG 0.353127 1_2:+54749072 Msa0077730:CDS
GTGTATGGTGGATCCATCTT+TGG 0.355339 1_2:+54745650 Msa0077730:CDS
AAAAGAACCAAACTGTTATC+TGG 0.362259 1_2:+54748242 Msa0077730:CDS
TATATAACTTTAAGTGTGTT+TGG 0.364555 1_2:-54749188 None:intergenic
TGCCCTCGAAAGAGGAATTC+CGG 0.372896 1_2:+54747964 Msa0077730:CDS
ATTGGTTTATTGTATGTGTA+TGG 0.380007 1_2:+54745635 Msa0077730:CDS
CTCAGGATGAAGAGAATCTA+AGG 0.380827 1_2:+54748164 Msa0077730:CDS
TATTGTACAGACGAAATATT+GGG 0.383227 1_2:-54750235 None:intergenic
GGAGGACTGGTCAATCTTGC+AGG 0.386413 1_2:-54748811 None:intergenic
TCATGTTTGTTCTATTCATT+CGG 0.391833 1_2:-54749876 None:intergenic
CAGATTTGGCTCTGAATGTC+TGG 0.392842 1_2:+54745479 Msa0077730:five_prime_UTR
GGTTTAGCTTAGAATCCAAT+TGG 0.393722 1_2:-54744522 None:intergenic
GTTCTCGTTGTCGAATTGAT+TGG 0.395510 1_2:+54748053 Msa0077730:CDS
CCGGCATATCTTGGTGTGTT+GGG 0.409827 1_2:+54747983 Msa0077730:CDS
ATCTCAATCAATAGATCCTC+TGG 0.411086 1_2:-54749650 None:intergenic
GGTGAAAAGATAGCGTTTCC+TGG 0.413514 1_2:+54746936 Msa0077730:CDS
CAGAACTGGATGGTTGAAAA+AGG 0.415347 1_2:+54746915 Msa0077730:CDS
GAGAGAGAGTTGATAAATAC+TGG 0.416336 1_2:+54749033 Msa0077730:CDS
ATCACGGAAGATTACAAAAC+CGG 0.418144 1_2:-54749693 None:intergenic
CATAATATTCCTTATTGTAT+CGG 0.419784 1_2:-54749081 None:intergenic
GCAGTTGCAACCGCAGATTC+GGG 0.422319 1_2:+54749770 Msa0077730:CDS
TTCAAATGAAATGTTTGAAA+AGG 0.423412 1_2:+54748858 Msa0077730:CDS
TTCTTCACGAAATCAATCAT+TGG 0.425949 1_2:-54749722 None:intergenic
AGCTTTACCTTGTATCCTGC+TGG 0.439990 1_2:-54746417 None:intergenic
TTGCTTACTGCTTCACCACT+TGG 0.443831 1_2:-54749965 None:intergenic
TAGCCAAAATCAGCTAATCT+AGG 0.446639 1_2:-54748835 None:intergenic
ACCTTGTATCCTGCTGGAGG+TGG 0.447322 1_2:-54746411 None:intergenic
ATCAAGTTTCGGGCAGGTTG+AGG 0.449725 1_2:+54745784 Msa0077730:CDS
TACTACTTCTTGAACTAGAC+CGG 0.450201 1_2:+54748092 Msa0077730:CDS
TGATAAGTACATTGCATCAA+TGG 0.450486 1_2:+54746986 Msa0077730:CDS
AGAGGAATTCCGGCATATCT+TGG 0.451720 1_2:+54747974 Msa0077730:CDS
TTGAACTAGACCGGGTTCTC+AGG 0.456403 1_2:+54748101 Msa0077730:CDS
TTGGTGTTGCGACGTTCAGT+TGG 0.457036 1_2:+54745445 Msa0077730:five_prime_UTR
TCAAAAGATCTGCTTGGGTA+TGG 0.460861 1_2:-54748019 None:intergenic
ATATATGACAGAGGCCTCAT+AGG 0.461279 1_2:+54749206 Msa0077730:CDS
ATATGATCTGCTGCTGCAAA+GGG 0.463715 1_2:+54749929 Msa0077730:three_prime_UTR
AAGATAGCGTTTCCTGGAGG+TGG 0.467053 1_2:+54746942 Msa0077730:CDS
AAACTCGGGTCATCATATTT+GGG 0.469992 1_2:+54745722 Msa0077730:CDS
CATAGAGGAGGGCGAGTACC+AGG 0.471766 1_2:-54748304 None:intergenic
CAATTGTAGCGCCTTTCTGC+AGG 0.474236 1_2:-54746381 None:intergenic
AACCTCCTGGCCTGAGAACC+CGG 0.474438 1_2:-54748111 None:intergenic
GAGTACTCACGTTCACTGTA+AGG 0.479937 1_2:-54748385 None:intergenic
CAAGTTCAAAAGATCTGCTT+GGG 0.481909 1_2:-54748024 None:intergenic
CATCAGGATCTGCGTCAGAC+TGG 0.485907 1_2:-54748327 None:intergenic
AACAATAATCTAAACAATGA+AGG 0.490397 1_2:+54747818 Msa0077730:CDS
AGTACTTAACTGCTTTGCAC+TGG 0.490999 1_2:+54749744 Msa0077730:CDS
GGTTTATTGTATGTGTATGG+TGG 0.491063 1_2:+54745638 Msa0077730:CDS
GCGATTCCACTTGGAGAAAG+TGG 0.491205 1_2:-54744016 None:intergenic
ATCCAATTTGCCCTCGAAAG+AGG 0.492639 1_2:+54747956 Msa0077730:CDS
CTGGTCAATCTTGCAGGCCA+TGG 0.493398 1_2:-54748805 None:intergenic
GGTTTGTGATGATCGACATT+CGG 0.499002 1_2:+54746266 Msa0077730:intron
ATTGATTGGCTTCAGAGAGA+TGG 0.500213 1_2:+54748067 Msa0077730:CDS
CACCTTAAATTTCACACTGT+CGG 0.500946 1_2:+54744363 Msa0077730:five_prime_UTR
TTTCGGGCAGGTTGAGGAGG+AGG 0.501923 1_2:+54745790 Msa0077730:CDS
ATGCCGGAATTCCTCTTTCG+AGG 0.502230 1_2:-54747967 None:intergenic
TGATATCATTACAATGTCCT+TGG 0.502493 1_2:+54747907 Msa0077730:CDS
GGCAAATCATTAAGGAAACT+CGG 0.503496 1_2:+54745707 Msa0077730:CDS
TGGTGTTGCGACGTTCAGTT+GGG 0.506408 1_2:+54745446 Msa0077730:five_prime_UTR
TCATCCGCAGTTGATAGATA+AGG 0.506793 1_2:-54746314 None:intergenic
TTTACCACCGCGATTCCACT+TGG 0.514346 1_2:-54744025 None:intergenic
TCATAGGCGCCACTCATGAC+TGG 0.514718 1_2:+54749222 Msa0077730:CDS
TATATGATCTGCTGCTGCAA+AGG 0.514925 1_2:+54749928 Msa0077730:three_prime_UTR
TGCTTCCATCTGTGTTGCGA+CGG 0.516462 1_2:+54745607 Msa0077730:CDS
ATGCACATCATTTGGTGCCA+AGG 0.517710 1_2:-54747924 None:intergenic
ATCTTTGGTTCTCAAAGTAG+TGG 0.519421 1_2:+54745665 Msa0077730:CDS
AGCTAATCTAGGAGGAGGAC+TGG 0.521950 1_2:-54748824 None:intergenic
AGTCATGAGTGGCGCCTATG+AGG 0.523143 1_2:-54749220 None:intergenic
TGAAAATGAGTCCCACCTCC+AGG 0.523764 1_2:-54746954 None:intergenic
GCTAACTAGTGGAAGCTTCA+GGG 0.524448 1_2:+54749850 Msa0077730:CDS
TCCGGCATATCTTGGTGTGT+TGG 0.527386 1_2:+54747982 Msa0077730:CDS
TGCTTGATTCCACCTCCAGC+AGG 0.528228 1_2:+54746402 Msa0077730:CDS
CGATTCCACTTGGAGAAAGT+GGG 0.528474 1_2:-54744015 None:intergenic
TCAGATGACAACAAAGCTAA+AGG 0.530234 1_2:+54748769 Msa0077730:intron
TCCACCTCCAGCAGGATACA+AGG 0.532112 1_2:+54746410 Msa0077730:CDS
ATCTTCATCAAGTTTCGGGC+AGG 0.532250 1_2:+54745778 Msa0077730:CDS
CAATCATTGGCTGTTTATCA+CGG 0.533993 1_2:-54749709 None:intergenic
TATTGCAGGTCCCTGTTAAG+TGG 0.534088 1_2:+54746823 Msa0077730:intron
GTTTAGCTTAGAATCCAATT+GGG 0.535911 1_2:-54744521 None:intergenic
AAGAAATTGTGGCTAACTAG+TGG 0.541752 1_2:+54749839 Msa0077730:CDS
CTAGACCGGGTTCTCAGGCC+AGG 0.542143 1_2:+54748106 Msa0077730:CDS
GCAAGTTCAAAAGATCTGCT+TGG 0.542505 1_2:-54748025 None:intergenic
GACAACAAAGCTAAAGGTAG+TGG 0.545840 1_2:+54748775 Msa0077730:CDS
TATGGATATGAAAGCTAACA+TGG 0.546843 1_2:+54749100 Msa0077730:CDS
CTTACGACTTGCTCCATGCA+TGG 0.547144 1_2:+54749591 Msa0077730:CDS
AGAGGATCTATTGATTGAGA+TGG 0.548428 1_2:+54749652 Msa0077730:CDS
ACTACTTTGAGAACCAAAGA+TGG 0.550404 1_2:-54745663 None:intergenic
TGCCGGAATTCCTCTTTCGA+GGG 0.551478 1_2:-54747966 None:intergenic
TCTTAAAGACAAGGAAGTAT+GGG 0.552534 1_2:+54749139 Msa0077730:CDS
GTCTCCAGAAGCATATGCTC+AGG 0.552689 1_2:+54748147 Msa0077730:CDS
AAGGTAGTGGCTTAGCTCCA+TGG 0.554029 1_2:+54748788 Msa0077730:CDS
CATGTGCAAGGTGAGTATGC+GGG 0.554830 1_2:-54746881 None:intergenic
GTACTTAACTGCTTTGCACT+GGG 0.555902 1_2:+54749745 Msa0077730:CDS
CCCAACACACCAAGATATGC+CGG 0.557514 1_2:-54747983 None:intergenic
TGCTTACTGCTTCACCACTT+GGG 0.563853 1_2:-54749964 None:intergenic
AGTGTGTTTGGTCCATCTTG+AGG 0.566835 1_2:-54749176 None:intergenic
GACATTGTCCTCCTGCAGAA+AGG 0.568006 1_2:+54746370 Msa0077730:CDS
CTTACATAATACCCAAATGC+AGG 0.569944 1_2:-54750110 None:intergenic
TTATAGCAATCATTTGTCAA+AGG 0.570240 1_2:-54748271 None:intergenic
CGGGTCATCATATTTGGGTG+CGG 0.570443 1_2:+54745727 Msa0077730:CDS
TTATCATACAGAAGAAATTG+TGG 0.573042 1_2:+54749828 Msa0077730:CDS
GCAAATCATTAAGGAAACTC+GGG 0.578611 1_2:+54745708 Msa0077730:CDS
GAAAGAAATGAGTGATCTTG+TGG 0.587132 1_2:+54748192 Msa0077730:CDS
TGTGGTGTTGCAAGTTTCGG+AGG 0.588854 1_2:+54747869 Msa0077730:CDS
GAAATTGGACTTGTCTGTGA+TGG 0.590350 1_2:+54746335 Msa0077730:CDS
TTGCGGACAGTGCTTGATGT+TGG 0.592875 1_2:+54747845 Msa0077730:CDS
ACTACTTCTTGAACTAGACC+GGG 0.593228 1_2:+54748093 Msa0077730:CDS
TTTACCTTGTATCCTGCTGG+AGG 0.594171 1_2:-54746414 None:intergenic
ATGAATGTTGTACCTCAAGA+TGG 0.595874 1_2:+54749164 Msa0077730:CDS
TAATGATATCAGATGCAAGA+AGG 0.596202 1_2:-54747895 None:intergenic
CAGACAAGACAGTCCATGCA+TGG 0.597709 1_2:-54749604 None:intergenic
AAAGAAATGAGTGATCTTGT+GGG 0.597795 1_2:+54748193 Msa0077730:CDS
AAGTTTCGGGCAGGTTGAGG+AGG 0.598476 1_2:+54745787 Msa0077730:CDS
GCGTCAGACTGGCATAGAGG+AGG 0.600761 1_2:-54748316 None:intergenic
TCATGTGCAAGGTGAGTATG+CGG 0.601983 1_2:-54746882 None:intergenic
ATCTTGTGGGGCGTATGTGT+TGG 0.603803 1_2:+54748206 Msa0077730:CDS
TCTGCGTCAGACTGGCATAG+AGG 0.604282 1_2:-54748319 None:intergenic
TTGTAGCGCCTTTCTGCAGG+AGG 0.605032 1_2:-54746378 None:intergenic
AAGCATTCTCAACATACCCT+CGG 0.607953 1_2:+54749567 Msa0077730:CDS
AAATCAGCTAATCTAGGAGG+AGG 0.608894 1_2:-54748829 None:intergenic
ACAGTGCTTGATGTTGGCTG+TGG 0.609589 1_2:+54747851 Msa0077730:CDS
TGGAGCTGCTCTTAAAGACA+AGG 0.611707 1_2:+54749130 Msa0077730:CDS
CGTCAGACTGGCATAGAGGA+GGG 0.612841 1_2:-54748315 None:intergenic
GAGTATGCGAAATAACCTCC+TGG 0.612850 1_2:-54748124 None:intergenic
GTGGTGTTGCAAGTTTCGGA+GGG 0.613327 1_2:+54747870 Msa0077730:CDS
AGATAGCGTTTCCTGGAGGT+GGG 0.614943 1_2:+54746943 Msa0077730:CDS
GACCGCGTGCTTAGACCTAC+CGG 0.616375 1_2:+54749674 Msa0077730:CDS
TGGAGCAAGTCGTAAGTCCG+AGG 0.616704 1_2:-54749584 None:intergenic
AGTCAGTGTATTGTATTGTG+AGG 0.617658 1_2:+54745396 Msa0077730:five_prime_UTR
ATAAGGTGTCTATCTAAGCA+AGG 0.619479 1_2:-54746297 None:intergenic
TTTCAGCTAATAAATGTCGA+GGG 0.621039 1_2:+54745550 Msa0077730:exon
ATAACTAAAATACAAACACT+TGG 0.622410 1_2:+54744421 Msa0077730:five_prime_UTR
CTAGTTCAATAATCAAGACA+TGG 0.624276 1_2:+54750133 Msa0077730:three_prime_UTR
GTTTCAGCTAATAAATGTCG+AGG 0.624315 1_2:+54745549 Msa0077730:exon
GCAAACCCACTTTCTCCAAG+TGG 0.629272 1_2:+54744010 Msa0077730:five_prime_UTR
GAAGAAAGATTGCAGTCCAG+AGG 0.639031 1_2:+54749634 Msa0077730:CDS
GGTGCGGATGATGACAATGA+TGG 0.639680 1_2:+54745743 Msa0077730:CDS
CCAAAATCAGCTAATCTAGG+AGG 0.640226 1_2:-54748832 None:intergenic
TTCAGCTAATAAATGTCGAG+GGG 0.645373 1_2:+54745551 Msa0077730:exon
AGAGTCAGAACCCGAATCTG+CGG 0.645931 1_2:-54749780 None:intergenic
ACTTTCTCCAAGTGGAATCG+CGG 0.650721 1_2:+54744018 Msa0077730:five_prime_UTR
GGAGCAAGTCGTAAGTCCGA+GGG 0.661958 1_2:-54749583 None:intergenic
TAAACAATGAAGGAAGATTG+CGG 0.666101 1_2:+54747828 Msa0077730:CDS
CGACAGTGTGAAATTTAAGG+TGG 0.666495 1_2:-54744362 None:intergenic
AAAATCTGACCAGAACTGGA+TGG 0.669903 1_2:+54746905 Msa0077730:CDS
CGGAAGATTACAAAACCGGT+AGG 0.669981 1_2:-54749689 None:intergenic
GATTCAATACCAGTCATGAG+TGG 0.672442 1_2:-54749231 None:intergenic
TTCTCCAAGTGGAATCGCGG+TGG 0.673024 1_2:+54744021 Msa0077730:five_prime_UTR
TGAAATGTTTGAAAAGGACA+CGG 0.677403 1_2:+54748864 Msa0077730:CDS
GACCGGGTTCTCAGGCCAGG+AGG 0.684761 1_2:+54748109 Msa0077730:CDS
ATGGATATGAAAGCTAACAT+GGG 0.699127 1_2:+54749101 Msa0077730:CDS
AACCGGTAGGTCTAAGCACG+CGG 0.699582 1_2:-54749676 None:intergenic
CTTAAAGTTATATATGACAG+AGG 0.704000 1_2:+54749197 Msa0077730:CDS
GACACCTTATCTATCAACTG+CGG 0.711012 1_2:+54746310 Msa0077730:CDS
GGATCAAAGTACTTCCCAAG+TGG 0.711298 1_2:+54749950 Msa0077730:three_prime_UTR
TCAGCTAATAAATGTCGAGG+GGG 0.718230 1_2:+54745552 Msa0077730:exon
AAGAAATGAGTGATCTTGTG+GGG 0.720429 1_2:+54748194 Msa0077730:CDS
GAAAAGATAGCGTTTCCTGG+AGG 0.737306 1_2:+54746939 Msa0077730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAAAATCATTAATAAG+AGG - chr1_2:54748911-54748930 None:intergenic 10.0%
!!! TTTTTTTTAGTTTGTTTTAG+TGG + chr1_2:54744625-54744644 Msa0077730:intron 15.0%
!!! TGATTATAACTTGTTATTAA+TGG + chr1_2:54744740-54744759 Msa0077730:intron 15.0%
!!! ATAAATCATGTTTCTTTTTA+TGG + chr1_2:54744952-54744971 Msa0077730:intron 15.0%
!!! TAAATCATGTTTCTTTTTAT+GGG + chr1_2:54744953-54744972 Msa0077730:intron 15.0%
!! AAAAAGTTTAAACTAAGATA+AGG - chr1_2:54745277-54745296 None:intergenic 15.0%
!!! ATAATTCTGATTTGAATTAT+TGG + chr1_2:54745426-54745445 Msa0077730:five_prime_UTR 15.0%
!! TGCTTAAAATTAAATGTAAA+TGG + chr1_2:54746032-54746051 Msa0077730:intron 15.0%
!! AAAAATGAAATAGTGATAAA+AGG - chr1_2:54747346-54747365 None:intergenic 15.0%
!!! TTTATCACTATTTCATTTTT+TGG + chr1_2:54747346-54747365 Msa0077730:intron 15.0%
!!! TAATTAAAGATTCTTTTTAG+AGG + chr1_2:54748676-54748695 Msa0077730:intron 15.0%
!! TAAAAAAAATGAAAATGCAA+TGG - chr1_2:54749907-54749926 None:intergenic 15.0%
!! TCAAGTTATTATTAAGAAAT+AGG + chr1_2:54750052-54750071 Msa0077730:three_prime_UTR 15.0%
!!! TTTTGAGTAAAAGTTTTTTG+TGG - chr1_2:54744167-54744186 None:intergenic 20.0%
!! ATAACTAAAATACAAACACT+TGG + chr1_2:54744421-54744440 Msa0077730:five_prime_UTR 20.0%
!!! TATTGTTTTGCATTGTTTTT+TGG + chr1_2:54744567-54744586 Msa0077730:intron 20.0%
!!! ATTGTTTTGCATTGTTTTTT+GGG + chr1_2:54744568-54744587 Msa0077730:intron 20.0%
!! TTTATTGTTAACATGATTCA+TGG + chr1_2:54744845-54744864 Msa0077730:intron 20.0%
!! ATAATTCAGGAAATCAAAAT+TGG - chr1_2:54744894-54744913 None:intergenic 20.0%
!!! AAATCATGTTTCTTTTTATG+GGG + chr1_2:54744954-54744973 Msa0077730:intron 20.0%
!!! AAGTTTTTAACCAAATACTT+TGG - chr1_2:54745103-54745122 None:intergenic 20.0%
!!! CTATTTTTGCTTTTGATATT+TGG + chr1_2:54745879-54745898 Msa0077730:intron 20.0%
!!! TATAATGTTTCTTCTTTTGA+AGG + chr1_2:54746245-54746264 Msa0077730:intron 20.0%
!! AAGATTAAAAATTGATCCAA+GGG - chr1_2:54746513-54746532 None:intergenic 20.0%
!! TAAGATTAAAAATTGATCCA+AGG - chr1_2:54746514-54746533 None:intergenic 20.0%
!! AAATAATACATATGTATCAG+AGG - chr1_2:54746777-54746796 None:intergenic 20.0%
!!! TATGTATTATTTTGAACTTC+TGG - chr1_2:54747172-54747191 None:intergenic 20.0%
!!! TTCTGTTTTTAGTACATTAA+CGG + chr1_2:54747192-54747211 Msa0077730:intron 20.0%
!! AATAGTGATAAAAGGAAAAA+GGG - chr1_2:54747338-54747357 None:intergenic 20.0%
!! AAATAGTGATAAAAGGAAAA+AGG - chr1_2:54747339-54747358 None:intergenic 20.0%
!!! TTTTATGTATTCTGTTTATC+TGG + chr1_2:54747716-54747735 Msa0077730:intron 20.0%
!! AACAATAATCTAAACAATGA+AGG + chr1_2:54747818-54747837 Msa0077730:CDS 20.0%
!!! TTTTTCTCTTTGTTATTTGT+TGG + chr1_2:54748409-54748428 Msa0077730:intron 20.0%
!!! ATCTTTTCATTTTTCCTTTT+AGG + chr1_2:54748508-54748527 Msa0077730:intron 20.0%
!! TATGTATTCTATGATTTCTA+TGG + chr1_2:54748547-54748566 Msa0077730:intron 20.0%
!!! GCTTGTTATTTATAACATAA+AGG - chr1_2:54748707-54748726 None:intergenic 20.0%
!! TTCAAATGAAATGTTTGAAA+AGG + chr1_2:54748858-54748877 Msa0077730:CDS 20.0%
!! CATAATATTCCTTATTGTAT+CGG - chr1_2:54749084-54749103 None:intergenic 20.0%
!! TATATAACTTTAAGTGTGTT+TGG - chr1_2:54749191-54749210 None:intergenic 20.0%
!!! AACTTCTAATTTTAGTAAAC+AGG - chr1_2:54749256-54749275 None:intergenic 20.0%
!! TATAAAATGTTGTCAAATAG+CGG - chr1_2:54749375-54749394 None:intergenic 20.0%
! AATTAGAGAAAAAGCTTACT+GGG - chr1_2:54744546-54744565 None:intergenic 25.0%
!!! ATTGTTTTTTGGGATTGTAA+TGG + chr1_2:54744578-54744597 Msa0077730:intron 25.0%
!!! ATCTGAAACATTTTACTATG+TGG + chr1_2:54744601-54744620 Msa0077730:intron 25.0%
! CCTTAGCAAAAATATAATTC+AGG - chr1_2:54744907-54744926 None:intergenic 25.0%
!!! CCTGAATTATATTTTTGCTA+AGG + chr1_2:54744904-54744923 Msa0077730:intron 25.0%
! TAAAAACCAAGTCAAAATGA+TGG - chr1_2:54744995-54745014 None:intergenic 25.0%
! TTGGATAAAGAAGTTTGAAT+TGG + chr1_2:54745230-54745249 Msa0077730:intron 25.0%
!!! TTTGAATTGGTCTCTTTTTT+TGG + chr1_2:54745243-54745262 Msa0077730:intron 25.0%
! GAAACAATAATCAGCAAATT+CGG - chr1_2:54745350-54745369 None:intergenic 25.0%
! TAATGATTAACCTGCAATTA+AGG - chr1_2:54745376-54745395 None:intergenic 25.0%
!! ATTGGTTTATTGTATGTGTA+TGG + chr1_2:54745635-54745654 Msa0077730:CDS 25.0%
! TAGAATATGGCAAATCATTA+AGG + chr1_2:54745699-54745718 Msa0077730:CDS 25.0%
! TATCAAAAGCAAAAATAGAG+TGG - chr1_2:54745877-54745896 None:intergenic 25.0%
!! ACTGATTTAGTTACTATATG+TGG - chr1_2:54746092-54746111 None:intergenic 25.0%
! ATTGTTTCCTGTATAATATG+TGG + chr1_2:54746149-54746168 Msa0077730:intron 25.0%
! AGATTAAAAATTGATCCAAG+GGG - chr1_2:54746512-54746531 None:intergenic 25.0%
! GAAATATGTAAACTAATCCT+AGG - chr1_2:54746555-54746574 None:intergenic 25.0%
! GTTCCTATTTATTCAAGATT+AGG + chr1_2:54746604-54746623 Msa0077730:intron 25.0%
! ACTCCTAATCTTGAATAAAT+AGG - chr1_2:54746610-54746629 None:intergenic 25.0%
! TTGTTAGAATAAGTAGAAGT+TGG + chr1_2:54746631-54746650 Msa0077730:intron 25.0%
!!! AGTTATGGGTTTTAGTTAAA+AGG - chr1_2:54746729-54746748 None:intergenic 25.0%
!! ATCACATTTGTTGAAGTTAT+GGG - chr1_2:54746743-54746762 None:intergenic 25.0%
!! AATCACATTTGTTGAAGTTA+TGG - chr1_2:54746744-54746763 None:intergenic 25.0%
!!! ACATTTTCATTTGAAGTAGA+AGG - chr1_2:54747119-54747138 None:intergenic 25.0%
!! AGTTTTCCATTTTCATTTGA+TGG + chr1_2:54747145-54747164 Msa0077730:intron 25.0%
! TATATTATGCTACTAAGGTA+TGG - chr1_2:54747498-54747517 None:intergenic 25.0%
! ATGTCTAGTAATTATGAATC+AGG - chr1_2:54747521-54747540 None:intergenic 25.0%
! TTATAGCAATCATTTGTCAA+AGG - chr1_2:54748274-54748293 None:intergenic 25.0%
!! TTTTGTATTCTATTGCTCAT+AGG + chr1_2:54748434-54748453 Msa0077730:intron 25.0%
! TTTGTATTCTATTGCTCATA+GGG + chr1_2:54748435-54748454 Msa0077730:intron 25.0%
! TAATAAATCTTTAGCCAGAA+TGG - chr1_2:54748574-54748593 None:intergenic 25.0%
! GCTAAAGATTTATTATCCTT+TGG + chr1_2:54748579-54748598 Msa0077730:intron 25.0%
! CATTTAATACTCAATTCTCA+GGG - chr1_2:54748646-54748665 None:intergenic 25.0%
! TTGCATACTGAAATTTATGT+TGG + chr1_2:54748740-54748759 Msa0077730:intron 25.0%
! AAATCAAATCCGATACAATA+AGG + chr1_2:54749072-54749091 Msa0077730:CDS 25.0%
! CGATACAATAAGGAATATTA+TGG + chr1_2:54749082-54749101 Msa0077730:CDS 25.0%
! CTTAAAGTTATATATGACAG+AGG + chr1_2:54749197-54749216 Msa0077730:CDS 25.0%
! TGATTTACACTTGACAATAT+TGG - chr1_2:54749297-54749316 None:intergenic 25.0%
! TTATCATACAGAAGAAATTG+TGG + chr1_2:54749828-54749847 Msa0077730:CDS 25.0%
! TCATGTTTGTTCTATTCATT+CGG - chr1_2:54749879-54749898 None:intergenic 25.0%
! CAAAAATGAGAATCAAAAGA+AGG - chr1_2:54750022-54750041 None:intergenic 25.0%
!!! TCTTTTGATTCTCATTTTTG+AGG + chr1_2:54750022-54750041 Msa0077730:three_prime_UTR 25.0%
! TATTGTACAGACGAAATATT+GGG - chr1_2:54750238-54750257 None:intergenic 25.0%
! TTATTGTACAGACGAAATAT+TGG - chr1_2:54750239-54750258 None:intergenic 25.0%
!!! TTACTTTTTTTTCCTCGAGA+CGG + chr1_2:54744062-54744081 Msa0077730:intron 30.0%
! GATTAAGGTAGCAACTTTTA+TGG - chr1_2:54744283-54744302 None:intergenic 30.0%
!! TTGTTTTTCTTTGACCCAAT+TGG + chr1_2:54744507-54744526 Msa0077730:five_prime_UTR 30.0%
! GTTTAGCTTAGAATCCAATT+GGG - chr1_2:54744524-54744543 None:intergenic 30.0%
GAATTAGAGAAAAAGCTTAC+TGG - chr1_2:54744547-54744566 None:intergenic 30.0%
! GTTCTTGTTGTGAATTATGA+TGG + chr1_2:54744647-54744666 Msa0077730:intron 30.0%
CATTCAATTCAATACATCAG+TGG - chr1_2:54744679-54744698 None:intergenic 30.0%
! AACAACACTAGCATTGAAAA+AGG - chr1_2:54744772-54744791 None:intergenic 30.0%
! GGTAGTTCTGTTTAATTGTA+TGG + chr1_2:54744810-54744829 Msa0077730:intron 30.0%
GAAATCAAAATTGGCAATTG+AGG - chr1_2:54744885-54744904 None:intergenic 30.0%
! TTTCTTTTTATGGGGTGATT+TGG + chr1_2:54744962-54744981 Msa0077730:intron 30.0%
! TTGTATTATTTTCCCTCCTA+TGG + chr1_2:54745067-54745086 Msa0077730:intron 30.0%
GAAATGAATGAAGAATCTTG+TGG + chr1_2:54745123-54745142 Msa0077730:intron 30.0%
AATGACTTTAGTTACACTCT+AGG + chr1_2:54745179-54745198 Msa0077730:intron 30.0%
CTTCTTTATCCAATGCAAAT+TGG - chr1_2:54745223-54745242 None:intergenic 30.0%
AACGTTTAATAAAGATCTGC+AGG + chr1_2:54745306-54745325 Msa0077730:intron 30.0%
! TCAAGCAAGATCCTTTTAAT+CGG + chr1_2:54745502-54745521 Msa0077730:five_prime_UTR 30.0%
! AGATCCTTTTAATCGGAATT+TGG + chr1_2:54745509-54745528 Msa0077730:five_prime_UTR 30.0%
AGATCCAAATTCCGATTAAA+AGG - chr1_2:54745516-54745535 None:intergenic 30.0%
TTTCAGCTAATAAATGTCGA+GGG + chr1_2:54745550-54745569 Msa0077730:exon 30.0%
GATGAATCTTCATCAAGTTT+CGG + chr1_2:54745773-54745792 Msa0077730:CDS 30.0%
ATGAATCTTCATCAAGTTTC+GGG + chr1_2:54745774-54745793 Msa0077730:CDS 30.0%
ATCTTACAAAGAGACTTACA+GGG - chr1_2:54745838-54745857 None:intergenic 30.0%
AATCTTACAAAGAGACTTAC+AGG - chr1_2:54745839-54745858 None:intergenic 30.0%
!!! GTAGAGTTTTGTTCAATTTC+AGG + chr1_2:54745945-54745964 Msa0077730:intron 30.0%
! TTCAGATGCAGCAATATTTT+TGG + chr1_2:54746196-54746215 Msa0077730:intron 30.0%
!!! TATGGGTTTTAGTTAAAAGG+AGG - chr1_2:54746726-54746745 None:intergenic 30.0%
TGATAAGTACATTGCATCAA+TGG + chr1_2:54746986-54747005 Msa0077730:CDS 30.0%
ATGTCTGAAAACATTCTCAA+GGG - chr1_2:54747047-54747066 None:intergenic 30.0%
! TTGAGAATGTTTTCAGACAT+GGG + chr1_2:54747047-54747066 Msa0077730:intron 30.0%
TGAAGTAGAAGGAATATGTA+CGG - chr1_2:54747108-54747127 None:intergenic 30.0%
! TACATGGTTTGAAGTGTATT+TGG + chr1_2:54747219-54747238 Msa0077730:intron 30.0%
TACAGTGGCGATAAAATATA+AGG - chr1_2:54747289-54747308 None:intergenic 30.0%
AAATGACATAGTTAGATGTG+AGG - chr1_2:54747387-54747406 None:intergenic 30.0%
TCAGGTATATTATGCTACTA+AGG - chr1_2:54747503-54747522 None:intergenic 30.0%
TATGAACAAGCAAAATGCAT+AGG - chr1_2:54747572-54747591 None:intergenic 30.0%
GAGTCATTATCATATCATGT+TGG + chr1_2:54747680-54747699 Msa0077730:intron 30.0%
TAAACAATGAAGGAAGATTG+CGG + chr1_2:54747828-54747847 Msa0077730:CDS 30.0%
TAATGATATCAGATGCAAGA+AGG - chr1_2:54747898-54747917 None:intergenic 30.0%
TGATATCATTACAATGTCCT+TGG + chr1_2:54747907-54747926 Msa0077730:CDS 30.0%
!! TGATTTTGATGCACATCATT+TGG - chr1_2:54747935-54747954 None:intergenic 30.0%
ATGAAGAGAATCTAAGGATA+TGG + chr1_2:54748170-54748189 Msa0077730:CDS 30.0%
AAAGAAATGAGTGATCTTGT+GGG + chr1_2:54748193-54748212 Msa0077730:CDS 30.0%
AAAAGAACCAAACTGTTATC+TGG + chr1_2:54748242-54748261 Msa0077730:CDS 30.0%
TGCTATAAAAAAAGAGAACC+TGG + chr1_2:54748286-54748305 Msa0077730:CDS 30.0%
!!! TGCAGTTTTTGGAGTAAATA+TGG + chr1_2:54748348-54748367 Msa0077730:CDS 30.0%
TTGTATTCTATTGCTCATAG+GGG + chr1_2:54748436-54748455 Msa0077730:intron 30.0%
CATTGACAGATAAACCTAAA+AGG - chr1_2:54748525-54748544 None:intergenic 30.0%
TTATTATCCTTTGGTTGCAA+TGG + chr1_2:54748588-54748607 Msa0077730:intron 30.0%
CCATTTAATACTCAATTCTC+AGG - chr1_2:54748647-54748666 None:intergenic 30.0%
CCTGAGAATTGAGTATTAAA+TGG + chr1_2:54748644-54748663 Msa0077730:intron 30.0%
TGAAATGTTTGAAAAGGACA+CGG + chr1_2:54748864-54748883 Msa0077730:CDS 30.0%
ATAAAATGTAAGCCAACAGT+TGG - chr1_2:54748991-54749010 None:intergenic 30.0%
! TTGGCTTACATTTTATCTTG+TGG + chr1_2:54748995-54749014 Msa0077730:intron 30.0%
! TACATTTTATCTTGTGGTAC+AGG + chr1_2:54749001-54749020 Msa0077730:intron 30.0%
TATGGATATGAAAGCTAACA+TGG + chr1_2:54749100-54749119 Msa0077730:CDS 30.0%
ATGGATATGAAAGCTAACAT+GGG + chr1_2:54749101-54749120 Msa0077730:CDS 30.0%
! TCTTAAAGACAAGGAAGTAT+GGG + chr1_2:54749139-54749158 Msa0077730:CDS 30.0%
TACACTTGACAATATTGGAA+TGG - chr1_2:54749292-54749311 None:intergenic 30.0%
TTCTTCACGAAATCAATCAT+TGG - chr1_2:54749725-54749744 None:intergenic 30.0%
CTAGTTCAATAATCAAGACA+TGG + chr1_2:54750133-54750152 Msa0077730:three_prime_UTR 30.0%
! TTGTGCTATTCTGTTTAGTA+TGG + chr1_2:54750264-54750283 Msa0077730:three_prime_UTR 30.0%
AAAGTTGCTACCTTAATCAC+AGG + chr1_2:54744285-54744304 Msa0077730:intron 35.0%
AGCAAATTGACCTGTGATTA+AGG - chr1_2:54744298-54744317 None:intergenic 35.0%
! AACTGTTGCTACACACTTTT+AGG + chr1_2:54744327-54744346 Msa0077730:five_prime_UTR 35.0%
CACCTTAAATTTCACACTGT+CGG + chr1_2:54744363-54744382 Msa0077730:five_prime_UTR 35.0%
AACCGACAGTGTGAAATTTA+AGG - chr1_2:54744368-54744387 None:intergenic 35.0%
! GGTTTAGCTTAGAATCCAAT+TGG - chr1_2:54744525-54744544 None:intergenic 35.0%
! GTTTTCCATTATGCTAGATC+TGG + chr1_2:54744789-54744808 Msa0077730:intron 35.0%
AACTACCAGATCTAGCATAA+TGG - chr1_2:54744797-54744816 None:intergenic 35.0%
!! TTTTATGGGGTGATTTGGAT+TGG + chr1_2:54744967-54744986 Msa0077730:intron 35.0%
!!! TTGGATCCATCATTTTGACT+TGG + chr1_2:54744986-54745005 Msa0077730:intron 35.0%
GTTAGATCACCAATTTGCAT+TGG + chr1_2:54745211-54745230 Msa0077730:intron 35.0%
TTGTTTCCTTCCTTAATTGC+AGG + chr1_2:54745363-54745382 Msa0077730:intron 35.0%
GATTAACCTGCAATTAAGGA+AGG - chr1_2:54745372-54745391 None:intergenic 35.0%
AGTCAGTGTATTGTATTGTG+AGG + chr1_2:54745396-54745415 Msa0077730:five_prime_UTR 35.0%
GTTTCAGCTAATAAATGTCG+AGG + chr1_2:54745549-54745568 Msa0077730:exon 35.0%
TTCAGCTAATAAATGTCGAG+GGG + chr1_2:54745551-54745570 Msa0077730:exon 35.0%
GGTTTATTGTATGTGTATGG+TGG + chr1_2:54745638-54745657 Msa0077730:CDS 35.0%
! ACTACTTTGAGAACCAAAGA+TGG - chr1_2:54745666-54745685 None:intergenic 35.0%
!! ATCTTTGGTTCTCAAAGTAG+TGG + chr1_2:54745665-54745684 Msa0077730:CDS 35.0%
GGCAAATCATTAAGGAAACT+CGG + chr1_2:54745707-54745726 Msa0077730:CDS 35.0%
GCAAATCATTAAGGAAACTC+GGG + chr1_2:54745708-54745727 Msa0077730:CDS 35.0%
AAACTCGGGTCATCATATTT+GGG + chr1_2:54745722-54745741 Msa0077730:CDS 35.0%
! TCTTTGTAAGATTAGCCACA+AGG + chr1_2:54745846-54745865 Msa0077730:intron 35.0%
AAAACTCTACACAAGAGACT+TGG - chr1_2:54745935-54745954 None:intergenic 35.0%
AACTATTGTACACATGAGCT+TGG - chr1_2:54745974-54745993 None:intergenic 35.0%
ATTGTGGCCACATATTATAC+AGG - chr1_2:54746159-54746178 None:intergenic 35.0%
GATGTGCATAAACTTGATTG+TGG - chr1_2:54746175-54746194 None:intergenic 35.0%
! ATAAGGTGTCTATCTAAGCA+AGG - chr1_2:54746300-54746319 None:intergenic 35.0%
CTTCTAACAACATCAACTCT+TGG - chr1_2:54746446-54746465 None:intergenic 35.0%
AATTTCTAAGCTTATCCCCT+TGG + chr1_2:54746494-54746513 Msa0077730:intron 35.0%
ATGAAAAATCTGACCAGAAC+TGG + chr1_2:54746901-54746920 Msa0077730:CDS 35.0%
CATGTCTGAAAACATTCTCA+AGG - chr1_2:54747048-54747067 None:intergenic 35.0%
! CTTGAGAATGTTTTCAGACA+TGG + chr1_2:54747046-54747065 Msa0077730:intron 35.0%
TCTGGACCATCAAATGAAAA+TGG - chr1_2:54747154-54747173 None:intergenic 35.0%
GTACATTAACGGAACATACA+TGG + chr1_2:54747203-54747222 Msa0077730:intron 35.0%
TAGGAGAGAAACAAATACAG+TGG - chr1_2:54747304-54747323 None:intergenic 35.0%
AAAAAGGGAGGAGAAAGAAT+AGG - chr1_2:54747323-54747342 None:intergenic 35.0%
AGTGATAAAAGGAAAAAGGG+AGG - chr1_2:54747335-54747354 None:intergenic 35.0%
TAGAAGCTTAAGCTACAAGA+TGG - chr1_2:54747464-54747483 None:intergenic 35.0%
! TTTTGCTTGTTCATACTACG+AGG + chr1_2:54747577-54747596 Msa0077730:intron 35.0%
TTTGCTTGTTCATACTACGA+GGG + chr1_2:54747578-54747597 Msa0077730:intron 35.0%
!! GAAATGCTTGAGGTATTGAA+TGG - chr1_2:54747615-54747634 None:intergenic 35.0%
ACAACATTTCGAAATGCTTG+AGG - chr1_2:54747625-54747644 None:intergenic 35.0%
TGTCCTCGAAGATTTAGATA+TGG + chr1_2:54747642-54747661 Msa0077730:intron 35.0%
TGACCATATCTAAATCTTCG+AGG - chr1_2:54747648-54747667 None:intergenic 35.0%
TGTTCGAAAAGTTAAGCATC+TGG - chr1_2:54747802-54747821 None:intergenic 35.0%
CAAGTTCAAAAGATCTGCTT+GGG - chr1_2:54748027-54748046 None:intergenic 35.0%
TACTACTTCTTGAACTAGAC+CGG + chr1_2:54748092-54748111 Msa0077730:CDS 35.0%
GAAAGAAATGAGTGATCTTG+TGG + chr1_2:54748192-54748211 Msa0077730:CDS 35.0%
AAGAAATGAGTGATCTTGTG+GGG + chr1_2:54748194-54748213 Msa0077730:CDS 35.0%
! GTTTTTGCCAGATAACAGTT+TGG - chr1_2:54748252-54748271 None:intergenic 35.0%
TTTACTCCAAAAACTGCATC+AGG - chr1_2:54748346-54748365 None:intergenic 35.0%
TGTATTCTATTGCTCATAGG+GGG + chr1_2:54748437-54748456 Msa0077730:intron 35.0%
ATGATTTCTATGGTCCATTC+TGG + chr1_2:54748557-54748576 Msa0077730:intron 35.0%
AAACAATCCATTGCAACCAA+AGG - chr1_2:54748598-54748617 None:intergenic 35.0%
! GGATTGTTTGATTTCCATGA+AGG + chr1_2:54748609-54748628 Msa0077730:intron 35.0%
TCAGATGACAACAAAGCTAA+AGG + chr1_2:54748769-54748788 Msa0077730:intron 35.0%
TAGCCAAAATCAGCTAATCT+AGG - chr1_2:54748838-54748857 None:intergenic 35.0%
CATTTAGCTAAACCAACTGT+TGG + chr1_2:54748976-54748995 Msa0077730:intron 35.0%
!! GAGAGAGAGTTGATAAATAC+TGG + chr1_2:54749033-54749052 Msa0077730:CDS 35.0%
AAAGCTAACATGGGTTCATT+TGG + chr1_2:54749110-54749129 Msa0077730:CDS 35.0%
CTCTTAAAGACAAGGAAGTA+TGG + chr1_2:54749138-54749157 Msa0077730:CDS 35.0%
ATGAATGTTGTACCTCAAGA+TGG + chr1_2:54749164-54749183 Msa0077730:CDS 35.0%
! TTTCTGCTGTCAGTTTTTGT+TGG + chr1_2:54749469-54749488 Msa0077730:intron 35.0%
ATCTCAATCAATAGATCCTC+TGG - chr1_2:54749653-54749672 None:intergenic 35.0%
! AGAGGATCTATTGATTGAGA+TGG + chr1_2:54749652-54749671 Msa0077730:CDS 35.0%
ATCACGGAAGATTACAAAAC+CGG - chr1_2:54749696-54749715 None:intergenic 35.0%
! CAATCATTGGCTGTTTATCA+CGG - chr1_2:54749712-54749731 None:intergenic 35.0%
AAGAAATTGTGGCTAACTAG+TGG + chr1_2:54749839-54749858 Msa0077730:CDS 35.0%
! AATAGGCATCACGCTTTTAT+AGG + chr1_2:54750069-54750088 Msa0077730:three_prime_UTR 35.0%
! AAAATTTTGCTGCCTGCATT+TGG + chr1_2:54750098-54750117 Msa0077730:three_prime_UTR 35.0%
! AAATTTTGCTGCCTGCATTT+GGG + chr1_2:54750099-54750118 Msa0077730:three_prime_UTR 35.0%
CTTACATAATACCCAAATGC+AGG - chr1_2:54750113-54750132 None:intergenic 35.0%
!! GTTGCTACACACTTTTAGGT+TGG + chr1_2:54744331-54744350 Msa0077730:five_prime_UTR 40.0%
CGACAGTGTGAAATTTAAGG+TGG - chr1_2:54744365-54744384 None:intergenic 40.0%
! AGTGTCTGGTCCAAAGTATT+TGG + chr1_2:54745090-54745109 Msa0077730:intron 40.0%
!!! TGGGTTTTGGATTGCAGATT+TGG + chr1_2:54745465-54745484 Msa0077730:five_prime_UTR 40.0%
TCAGCTAATAAATGTCGAGG+GGG + chr1_2:54745552-54745571 Msa0077730:exon 40.0%
! TGTGTTGCGACGGTTTTTAT+TGG + chr1_2:54745617-54745636 Msa0077730:CDS 40.0%
!! GGTTCATCTGCTCTAGAATA+TGG + chr1_2:54745686-54745705 Msa0077730:CDS 40.0%
GAAACTCGGGTCATCATATT+TGG + chr1_2:54745721-54745740 Msa0077730:CDS 40.0%
AGACTTACAGGGAAACTCTT+TGG - chr1_2:54745827-54745846 None:intergenic 40.0%
AATAGAGTGGATGTTCCTTG+TGG - chr1_2:54745864-54745883 None:intergenic 40.0%
GGTTTGTGATGATCGACATT+CGG + chr1_2:54746266-54746285 Msa0077730:intron 40.0%
GACACCTTATCTATCAACTG+CGG + chr1_2:54746310-54746329 Msa0077730:CDS 40.0%
!! TCATCCGCAGTTGATAGATA+AGG - chr1_2:54746317-54746336 None:intergenic 40.0%
CTATCAACTGCGGATGAAAT+TGG + chr1_2:54746320-54746339 Msa0077730:CDS 40.0%
GAAATTGGACTTGTCTGTGA+TGG + chr1_2:54746335-54746354 Msa0077730:CDS 40.0%
AGCATCTCAGATTATCTCCT+AGG + chr1_2:54746535-54746554 Msa0077730:intron 40.0%
ATTAGGACATGGCAAATGCT+CGG - chr1_2:54746804-54746823 None:intergenic 40.0%
TTGCCATGTCCTAATATTGC+AGG + chr1_2:54746809-54746828 Msa0077730:intron 40.0%
TAACAGGGACCTGCAATATT+AGG - chr1_2:54746821-54746840 None:intergenic 40.0%
!! TGCTTTTTGGCCACTTAACA+GGG - chr1_2:54746836-54746855 None:intergenic 40.0%
! GGTCAGATTTTTCATGTGCA+AGG - chr1_2:54746896-54746915 None:intergenic 40.0%
AAAATCTGACCAGAACTGGA+TGG + chr1_2:54746905-54746924 Msa0077730:CDS 40.0%
!!! CTTTTTCAACCATCCAGTTC+TGG - chr1_2:54746917-54746936 None:intergenic 40.0%
CAGAACTGGATGGTTGAAAA+AGG + chr1_2:54746915-54746934 Msa0077730:CDS 40.0%
! GGTGGGACTCATTTTCATTA+TGG + chr1_2:54746960-54746979 Msa0077730:CDS 40.0%
CATATCATGTTGGACAATGC+TGG + chr1_2:54747690-54747709 Msa0077730:intron 40.0%
! CTGGATTTGCTTGCATTTCA+TGG + chr1_2:54747735-54747754 Msa0077730:intron 40.0%
TGGCAATGCAAAGTTGAAAC+TGG - chr1_2:54747782-54747801 None:intergenic 40.0%
TCAAAAGATCTGCTTGGGTA+TGG - chr1_2:54748022-54748041 None:intergenic 40.0%
GCAAGTTCAAAAGATCTGCT+TGG - chr1_2:54748028-54748047 None:intergenic 40.0%
GTTCTCGTTGTCGAATTGAT+TGG + chr1_2:54748053-54748072 Msa0077730:CDS 40.0%
!! ATTGATTGGCTTCAGAGAGA+TGG + chr1_2:54748067-54748086 Msa0077730:CDS 40.0%
ACTACTTCTTGAACTAGACC+GGG + chr1_2:54748093-54748112 Msa0077730:CDS 40.0%
CTCAGGATGAAGAGAATCTA+AGG + chr1_2:54748164-54748183 Msa0077730:CDS 40.0%
GTATTCTATTGCTCATAGGG+GGG + chr1_2:54748438-54748457 Msa0077730:intron 40.0%
GACAACAAAGCTAAAGGTAG+TGG + chr1_2:54748775-54748794 Msa0077730:CDS 40.0%
AAATCAGCTAATCTAGGAGG+AGG - chr1_2:54748832-54748851 None:intergenic 40.0%
CCAAAATCAGCTAATCTAGG+AGG - chr1_2:54748835-54748854 None:intergenic 40.0%
!! CCTCCTAGATTAGCTGATTT+TGG + chr1_2:54748832-54748851 Msa0077730:CDS 40.0%
ATCTTGTGGTACAGGAACTA+TGG + chr1_2:54749009-54749028 Msa0077730:intron 40.0%
ATATATGACAGAGGCCTCAT+AGG + chr1_2:54749206-54749225 Msa0077730:CDS 40.0%
GATTCAATACCAGTCATGAG+TGG - chr1_2:54749234-54749253 None:intergenic 40.0%
AACTGACAGCAGAAAATGCA+CGG - chr1_2:54749464-54749483 None:intergenic 40.0%
CGAGATGTATCGTGATAGTT+AGG - chr1_2:54749537-54749556 None:intergenic 40.0%
TATCACGATACATCTCGAAC+AGG + chr1_2:54749540-54749559 Msa0077730:intron 40.0%
AAGCATTCTCAACATACCCT+CGG + chr1_2:54749567-54749586 Msa0077730:CDS 40.0%
AGTACTTAACTGCTTTGCAC+TGG + chr1_2:54749744-54749763 Msa0077730:CDS 40.0%
GTACTTAACTGCTTTGCACT+GGG + chr1_2:54749745-54749764 Msa0077730:CDS 40.0%
TATATGATCTGCTGCTGCAA+AGG + chr1_2:54749928-54749947 Msa0077730:three_prime_UTR 40.0%
ATATGATCTGCTGCTGCAAA+GGG + chr1_2:54749929-54749948 Msa0077730:three_prime_UTR 40.0%
CGATTCCACTTGGAGAAAGT+GGG - chr1_2:54744018-54744037 None:intergenic 45.0%
ACTTTCTCCAAGTGGAATCG+CGG + chr1_2:54744018-54744037 Msa0077730:five_prime_UTR 45.0%
!! CAGATTTGGCTCTGAATGTC+TGG + chr1_2:54745479-54745498 Msa0077730:five_prime_UTR 45.0%
AAAAACCGTCGCAACACAGA+TGG - chr1_2:54745615-54745634 None:intergenic 45.0%
!! GTGTATGGTGGATCCATCTT+TGG + chr1_2:54745650-54745669 Msa0077730:CDS 45.0%
ATCTTCATCAAGTTTCGGGC+AGG + chr1_2:54745778-54745797 Msa0077730:CDS 45.0%
TTTACCTTGTATCCTGCTGG+AGG - chr1_2:54746417-54746436 None:intergenic 45.0%
AGCTTTACCTTGTATCCTGC+TGG - chr1_2:54746420-54746439 None:intergenic 45.0%
GGACCTGCAATATTAGGACA+TGG - chr1_2:54746815-54746834 None:intergenic 45.0%
TATTGCAGGTCCCTGTTAAG+TGG + chr1_2:54746823-54746842 Msa0077730:intron 45.0%
!!! CTGCTTTTTGGCCACTTAAC+AGG - chr1_2:54746837-54746856 None:intergenic 45.0%
!! CACACCTCATCTCTGCTTTT+TGG - chr1_2:54746849-54746868 None:intergenic 45.0%
CAAAAAGCAGAGATGAGGTG+TGG + chr1_2:54746847-54746866 Msa0077730:CDS 45.0%
TCATGTGCAAGGTGAGTATG+CGG - chr1_2:54746885-54746904 None:intergenic 45.0%
GGTGAAAAGATAGCGTTTCC+TGG + chr1_2:54746936-54746955 Msa0077730:CDS 45.0%
GAAAAGATAGCGTTTCCTGG+AGG + chr1_2:54746939-54746958 Msa0077730:CDS 45.0%
GGCAAATGTAAGTCTGCATC+TGG + chr1_2:54747007-54747026 Msa0077730:intron 45.0%
!! AAGTCTGCATCTGGCTTTAC+TGG + chr1_2:54747016-54747035 Msa0077730:intron 45.0%
TTTCAGACATGGGAGTTCTG+TGG + chr1_2:54747057-54747076 Msa0077730:intron 45.0%
TTCAGACATGGGAGTTCTGT+GGG + chr1_2:54747058-54747077 Msa0077730:intron 45.0%
!! ATGCACATCATTTGGTGCCA+AGG - chr1_2:54747927-54747946 None:intergenic 45.0%
ATCCAATTTGCCCTCGAAAG+AGG + chr1_2:54747956-54747975 Msa0077730:CDS 45.0%
TTCCTCTTTCGAGGGCAAAT+TGG - chr1_2:54747961-54747980 None:intergenic 45.0%
AGAGGAATTCCGGCATATCT+TGG + chr1_2:54747974-54747993 Msa0077730:CDS 45.0%
GAGTATGCGAAATAACCTCC+TGG - chr1_2:54748127-54748146 None:intergenic 45.0%
TCATCCTGAGCATATGCTTC+TGG - chr1_2:54748154-54748173 None:intergenic 45.0%
! GCAGATCCTGATGCAGTTTT+TGG + chr1_2:54748337-54748356 Msa0077730:CDS 45.0%
GAGTACTCACGTTCACTGTA+AGG - chr1_2:54748388-54748407 None:intergenic 45.0%
GGGTCATTCTGTTTCCTTCA+TGG - chr1_2:54748626-54748645 None:intergenic 45.0%
TGGAGCTGCTCTTAAAGACA+AGG + chr1_2:54749130-54749149 Msa0077730:CDS 45.0%
AGTGTGTTTGGTCCATCTTG+AGG - chr1_2:54749179-54749198 None:intergenic 45.0%
TTGTCAAATAGCGGTTGCAG+TGG - chr1_2:54749366-54749385 None:intergenic 45.0%
GAAGAAAGATTGCAGTCCAG+AGG + chr1_2:54749634-54749653 Msa0077730:CDS 45.0%
CGGAAGATTACAAAACCGGT+AGG - chr1_2:54749692-54749711 None:intergenic 45.0%
GCTAACTAGTGGAAGCTTCA+GGG + chr1_2:54749850-54749869 Msa0077730:CDS 45.0%
! GGATCAAAGTACTTCCCAAG+TGG + chr1_2:54749950-54749969 Msa0077730:three_prime_UTR 45.0%
TGCTTACTGCTTCACCACTT+GGG - chr1_2:54749967-54749986 None:intergenic 45.0%
TTGCTTACTGCTTCACCACT+TGG - chr1_2:54749968-54749987 None:intergenic 45.0%
GCAAACCCACTTTCTCCAAG+TGG + chr1_2:54744010-54744029 Msa0077730:five_prime_UTR 50.0%
GCGATTCCACTTGGAGAAAG+TGG - chr1_2:54744019-54744038 None:intergenic 50.0%
TTTACCACCGCGATTCCACT+TGG - chr1_2:54744028-54744047 None:intergenic 50.0%
GAACTCATCAGAGTCAGAGC+AGG + chr1_2:54744084-54744103 Msa0077730:intron 50.0%
! TTTCCCTCCTATGGAGTGTC+TGG + chr1_2:54745076-54745095 Msa0077730:intron 50.0%
CTTTGGACCAGACACTCCAT+AGG - chr1_2:54745086-54745105 None:intergenic 50.0%
!! TTGGTGTTGCGACGTTCAGT+TGG + chr1_2:54745445-54745464 Msa0077730:five_prime_UTR 50.0%
!! TGGTGTTGCGACGTTCAGTT+GGG + chr1_2:54745446-54745465 Msa0077730:five_prime_UTR 50.0%
! TGCGACGTTCAGTTGGGTTT+TGG + chr1_2:54745452-54745471 Msa0077730:five_prime_UTR 50.0%
TGCTTCCATCTGTGTTGCGA+CGG + chr1_2:54745607-54745626 Msa0077730:CDS 50.0%
CGGGTCATCATATTTGGGTG+CGG + chr1_2:54745727-54745746 Msa0077730:CDS 50.0%
GGTGCGGATGATGACAATGA+TGG + chr1_2:54745743-54745762 Msa0077730:CDS 50.0%
ATCAAGTTTCGGGCAGGTTG+AGG + chr1_2:54745784-54745803 Msa0077730:CDS 50.0%
GACATTGTCCTCCTGCAGAA+AGG + chr1_2:54746370-54746389 Msa0077730:CDS 50.0%
CAATTGTAGCGCCTTTCTGC+AGG - chr1_2:54746384-54746403 None:intergenic 50.0%
GTGGCCAAAAAGCAGAGATG+AGG + chr1_2:54746842-54746861 Msa0077730:CDS 50.0%
CATGTGCAAGGTGAGTATGC+GGG - chr1_2:54746884-54746903 None:intergenic 50.0%
AAGATAGCGTTTCCTGGAGG+TGG + chr1_2:54746942-54746961 Msa0077730:CDS 50.0%
AGATAGCGTTTCCTGGAGGT+GGG + chr1_2:54746943-54746962 Msa0077730:CDS 50.0%
TGAAAATGAGTCCCACCTCC+AGG - chr1_2:54746957-54746976 None:intergenic 50.0%
TTGCGGACAGTGCTTGATGT+TGG + chr1_2:54747845-54747864 Msa0077730:CDS 50.0%
! ACAGTGCTTGATGTTGGCTG+TGG + chr1_2:54747851-54747870 Msa0077730:CDS 50.0%
!! GGCTGTGGTGTTGCAAGTTT+CGG + chr1_2:54747866-54747885 Msa0077730:CDS 50.0%
!! TGTGGTGTTGCAAGTTTCGG+AGG + chr1_2:54747869-54747888 Msa0077730:CDS 50.0%
!! GTGGTGTTGCAAGTTTCGGA+GGG + chr1_2:54747870-54747889 Msa0077730:CDS 50.0%
TGCCCTCGAAAGAGGAATTC+CGG + chr1_2:54747964-54747983 Msa0077730:CDS 50.0%
TGCCGGAATTCCTCTTTCGA+GGG - chr1_2:54747969-54747988 None:intergenic 50.0%
ATGCCGGAATTCCTCTTTCG+AGG - chr1_2:54747970-54747989 None:intergenic 50.0%
! TCCGGCATATCTTGGTGTGT+TGG + chr1_2:54747982-54748001 Msa0077730:CDS 50.0%
CCCAACACACCAAGATATGC+CGG - chr1_2:54747986-54748005 None:intergenic 50.0%
! CCGGCATATCTTGGTGTGTT+GGG + chr1_2:54747983-54748002 Msa0077730:CDS 50.0%
TTGAACTAGACCGGGTTCTC+AGG + chr1_2:54748101-54748120 Msa0077730:CDS 50.0%
! GTCTCCAGAAGCATATGCTC+AGG + chr1_2:54748147-54748166 Msa0077730:CDS 50.0%
ATCTTGTGGGGCGTATGTGT+TGG + chr1_2:54748206-54748225 Msa0077730:CDS 50.0%
! AAGGTAGTGGCTTAGCTCCA+TGG + chr1_2:54748788-54748807 Msa0077730:CDS 50.0%
AGCTAATCTAGGAGGAGGAC+TGG - chr1_2:54748827-54748846 None:intergenic 50.0%
! CTTACGACTTGCTCCATGCA+TGG + chr1_2:54749591-54749610 Msa0077730:CDS 50.0%
CAGACAAGACAGTCCATGCA+TGG - chr1_2:54749607-54749626 None:intergenic 50.0%
AGCAGTTGCAACCGCAGATT+CGG + chr1_2:54749769-54749788 Msa0077730:CDS 50.0%
AGAGTCAGAACCCGAATCTG+CGG - chr1_2:54749783-54749802 None:intergenic 50.0%
! TTCGGGTTCTGACTCTGTTC+AGG + chr1_2:54749787-54749806 Msa0077730:CDS 50.0%
GGCTAACTAGTGGAAGCTTC+AGG + chr1_2:54749849-54749868 Msa0077730:CDS 50.0%
TTCTCCAAGTGGAATCGCGG+TGG + chr1_2:54744021-54744040 Msa0077730:five_prime_UTR 55.0%
CTCTGATGAGTTCCGTCTCG+AGG - chr1_2:54744077-54744096 None:intergenic 55.0%
GGACCAGACACTCCATAGGA+GGG - chr1_2:54745082-54745101 None:intergenic 55.0%
TGGACCAGACACTCCATAGG+AGG - chr1_2:54745083-54745102 None:intergenic 55.0%
ATGTCGAGGGGGAGATCTGA+TGG + chr1_2:54745563-54745582 Msa0077730:CDS 55.0%
TGTCGAGGGGGAGATCTGAT+GGG + chr1_2:54745564-54745583 Msa0077730:CDS 55.0%
! AAGTTTCGGGCAGGTTGAGG+AGG + chr1_2:54745787-54745806 Msa0077730:CDS 55.0%
TTGTAGCGCCTTTCTGCAGG+AGG - chr1_2:54746381-54746400 None:intergenic 55.0%
TGCTTGATTCCACCTCCAGC+AGG + chr1_2:54746402-54746421 Msa0077730:CDS 55.0%
TCCACCTCCAGCAGGATACA+AGG + chr1_2:54746410-54746429 Msa0077730:CDS 55.0%
ACCTTGTATCCTGCTGGAGG+TGG - chr1_2:54746414-54746433 None:intergenic 55.0%
CGTCAGACTGGCATAGAGGA+GGG - chr1_2:54748318-54748337 None:intergenic 55.0%
TCTGCGTCAGACTGGCATAG+AGG - chr1_2:54748322-54748341 None:intergenic 55.0%
CATCAGGATCTGCGTCAGAC+TGG - chr1_2:54748330-54748349 None:intergenic 55.0%
CTGGTCAATCTTGCAGGCCA+TGG - chr1_2:54748808-54748827 None:intergenic 55.0%
!! GGAGGACTGGTCAATCTTGC+AGG - chr1_2:54748814-54748833 None:intergenic 55.0%
AGTCATGAGTGGCGCCTATG+AGG - chr1_2:54749223-54749242 None:intergenic 55.0%
TCATAGGCGCCACTCATGAC+TGG + chr1_2:54749222-54749241 Msa0077730:CDS 55.0%
GGAGCAAGTCGTAAGTCCGA+GGG - chr1_2:54749586-54749605 None:intergenic 55.0%
TGGAGCAAGTCGTAAGTCCG+AGG - chr1_2:54749587-54749606 None:intergenic 55.0%
AACCGGTAGGTCTAAGCACG+CGG - chr1_2:54749679-54749698 None:intergenic 55.0%
GCAGTTGCAACCGCAGATTC+GGG + chr1_2:54749770-54749789 Msa0077730:CDS 55.0%
! TTTCGGGCAGGTTGAGGAGG+AGG + chr1_2:54745790-54745809 Msa0077730:CDS 60.0%
AACCTCCTGGCCTGAGAACC+CGG - chr1_2:54748114-54748133 None:intergenic 60.0%
CATAGAGGAGGGCGAGTACC+AGG - chr1_2:54748307-54748326 None:intergenic 60.0%
GCGTCAGACTGGCATAGAGG+AGG - chr1_2:54748319-54748338 None:intergenic 60.0%
GACCGCGTGCTTAGACCTAC+CGG + chr1_2:54749674-54749693 Msa0077730:CDS 60.0%
CTAGACCGGGTTCTCAGGCC+AGG + chr1_2:54748106-54748125 Msa0077730:CDS 65.0%
GACCGGGTTCTCAGGCCAGG+AGG + chr1_2:54748109-54748128 Msa0077730:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 54744009 54750311 54744009 ID=Msa0077730;Name=Msa0077730
chr1_2 mRNA 54744009 54750311 54744009 ID=Msa0077730-mRNA-1;Parent=Msa0077730;Name=Msa0077730-mRNA-1;_AED=0.10;_eAED=0.10;_QI=521|1|1|1|0.66|0.6|10|428|624
chr1_2 exon 54744009 54744042 54744009 ID=Msa0077730-mRNA-1:exon:16978;Parent=Msa0077730-mRNA-1
chr1_2 exon 54744159 54744227 54744159 ID=Msa0077730-mRNA-1:exon:16979;Parent=Msa0077730-mRNA-1
chr1_2 exon 54744307 54744546 54744307 ID=Msa0077730-mRNA-1:exon:16980;Parent=Msa0077730-mRNA-1
chr1_2 exon 54745385 54745838 54745385 ID=Msa0077730-mRNA-1:exon:16981;Parent=Msa0077730-mRNA-1
chr1_2 exon 54746267 54746431 54746267 ID=Msa0077730-mRNA-1:exon:16982;Parent=Msa0077730-mRNA-1
chr1_2 exon 54746831 54747013 54746831 ID=Msa0077730-mRNA-1:exon:16983;Parent=Msa0077730-mRNA-1
chr1_2 exon 54747803 54748397 54747803 ID=Msa0077730-mRNA-1:exon:16984;Parent=Msa0077730-mRNA-1
chr1_2 exon 54748773 54748885 54748773 ID=Msa0077730-mRNA-1:exon:16985;Parent=Msa0077730-mRNA-1
chr1_2 exon 54749023 54749243 54749023 ID=Msa0077730-mRNA-1:exon:16986;Parent=Msa0077730-mRNA-1
chr1_2 exon 54749562 54750311 54749562 ID=Msa0077730-mRNA-1:exon:16987;Parent=Msa0077730-mRNA-1
chr1_2 five_prime_UTR 54744009 54744042 54744009 ID=Msa0077730-mRNA-1:five_prime_utr;Parent=Msa0077730-mRNA-1
chr1_2 five_prime_UTR 54744159 54744227 54744159 ID=Msa0077730-mRNA-1:five_prime_utr;Parent=Msa0077730-mRNA-1
chr1_2 five_prime_UTR 54744307 54744546 54744307 ID=Msa0077730-mRNA-1:five_prime_utr;Parent=Msa0077730-mRNA-1
chr1_2 five_prime_UTR 54745385 54745562 54745385 ID=Msa0077730-mRNA-1:five_prime_utr;Parent=Msa0077730-mRNA-1
chr1_2 CDS 54745563 54745838 54745563 ID=Msa0077730-mRNA-1:cds;Parent=Msa0077730-mRNA-1
chr1_2 CDS 54746267 54746431 54746267 ID=Msa0077730-mRNA-1:cds;Parent=Msa0077730-mRNA-1
chr1_2 CDS 54746831 54747013 54746831 ID=Msa0077730-mRNA-1:cds;Parent=Msa0077730-mRNA-1
chr1_2 CDS 54747803 54748397 54747803 ID=Msa0077730-mRNA-1:cds;Parent=Msa0077730-mRNA-1
chr1_2 CDS 54748773 54748885 54748773 ID=Msa0077730-mRNA-1:cds;Parent=Msa0077730-mRNA-1
chr1_2 CDS 54749023 54749243 54749023 ID=Msa0077730-mRNA-1:cds;Parent=Msa0077730-mRNA-1
chr1_2 CDS 54749562 54749883 54749562 ID=Msa0077730-mRNA-1:cds;Parent=Msa0077730-mRNA-1
chr1_2 three_prime_UTR 54749884 54750311 54749884 ID=Msa0077730-mRNA-1:three_prime_utr;Parent=Msa0077730-mRNA-1
Gene Sequence

>Msa0077730

ATGTCGAGGGGGAGATCTGATGGGTCACAAAAGAAGCGCATAGTTGCTTCCATCTGTGTTGCGACGGTTTTTATTGGTTTATTGTATGTGTATGGTGGATCCATCTTTGGTTCTCAAAGTAGTGGTTCATCTGCTCTAGAATATGGCAAATCATTAAGGAAACTCGGGTCATCATATTTGGGTGCGGATGATGACAATGATGGCAAGCAAGATGAATCTTCATCAAGTTTCGGGCAGGTTGAGGAGGAGGACAATATTGTTCCAAAGAGTTTCCCTGTTTGTGATGATCGACATTCGGAGTTGATTCCTTGCTTAGATAGACACCTTATCTATCAACTGCGGATGAAATTGGACTTGTCTGTGATGGAACACTATGAGAGACATTGTCCTCCTGCAGAAAGGCGCTACAATTGCTTGATTCCACCTCCAGCAGGATACAAGGTCCCTGTTAAGTGGCCAAAAAGCAGAGATGAGGTGTGGAAAGCAAATATCCCGCATACTCACCTTGCACATGAAAAATCTGACCAGAACTGGATGGTTGAAAAAGGTGAAAAGATAGCGTTTCCTGGAGGTGGGACTCATTTTCATTATGGAGCTGATAAGTACATTGCATCAATGGCAAATATGCTTAACTTTTCGAACAATAATCTAAACAATGAAGGAAGATTGCGGACAGTGCTTGATGTTGGCTGTGGTGTTGCAAGTTTCGGAGGGTACCTTCTTGCATCTGATATCATTACAATGTCCTTGGCACCAAATGATGTGCATCAAAATCAAATCCAATTTGCCCTCGAAAGAGGAATTCCGGCATATCTTGGTGTGTTGGGAACTAAGAGACTTCCATACCCAAGCAGATCTTTTGAACTTGCTCATTGTTCTCGTTGTCGAATTGATTGGCTTCAGAGAGATGGAATACTACTTCTTGAACTAGACCGGGTTCTCAGGCCAGGAGGTTATTTCGCATACTCGTCTCCAGAAGCATATGCTCAGGATGAAGAGAATCTAAGGATATGGAAAGAAATGAGTGATCTTGTGGGGCGTATGTGTTGGAGAATAGCTTCAAAAAAGAACCAAACTGTTATCTGGCAAAAACCTTTGACAAATGATTGCTATAAAAAAAGAGAACCTGGTACTCGCCCTCCTCTATGCCAGTCTGACGCAGATCCTGATGCAGTTTTTGGAGTAAATATGGAAGTTTGCATAACACCTTACAGTGAACATGACAACAAAGCTAAAGGTAGTGGCTTAGCTCCATGGCCTGCAAGATTGACCAGTCCTCCTCCTAGATTAGCTGATTTTGGCTATTCAAATGAAATGTTTGAAAAGGACACGGAACTATGGCGAGAGAGAGTTGATAAATACTGGAGTCTCATGAGTAAAAAAATCAAATCCGATACAATAAGGAATATTATGGATATGAAAGCTAACATGGGTTCATTTGGAGCTGCTCTTAAAGACAAGGAAGTATGGGTGATGAATGTTGTACCTCAAGATGGACCAAACACACTTAAAGTTATATATGACAGAGGCCTCATAGGCGCCACTCATGACTGGTGTGAAGCATTCTCAACATACCCTCGGACTTACGACTTGCTCCATGCATGGACTGTCTTGTCTGACGTAGCGAAGAAAGATTGCAGTCCAGAGGATCTATTGATTGAGATGGACCGCGTGCTTAGACCTACCGGTTTTGTAATCTTCCGTGATAAACAGCCAATGATTGATTTCGTGAAGAAGTACTTAACTGCTTTGCACTGGGAAGCAGTTGCAACCGCAGATTCGGGTTCTGACTCTGTTCAGGACAGTGATGAAGTTGTTTTTATCATACAGAAGAAATTGTGGCTAACTAGTGGAAGCTTCAGGGATACCGAATGA
Protein sequence

>Msa0077730

MSRGRSDGSQKKRIVASICVATVFIGLLYVYGGSIFGSQSSGSSALEYGKSLRKLGSSYLGADDDNDGKQDESSSSFGQVEEEDNIVPKSFPVCDDRHSELIPCLDRHLIYQLRMKLDLSVMEHYERHCPPAERRYNCLIPPPAGYKVPVKWPKSRDEVWKANIPHTHLAHEKSDQNWMVEKGEKIAFPGGGTHFHYGADKYIASMANMLNFSNNNLNNEGRLRTVLDVGCGVASFGGYLLASDIITMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDEENLRIWKEMSDLVGRMCWRIASKKNQTVIWQKPLTNDCYKKREPGTRPPLCQSDADPDAVFGVNMEVCITPYSEHDNKAKGSGLAPWPARLTSPPPRLADFGYSNEMFEKDTELWRERVDKYWSLMSKKIKSDTIRNIMDMKANMGSFGAALKDKEVWVMNVVPQDGPNTLKVIYDRGLIGATHDWCEAFSTYPRTYDLLHAWTVLSDVAKKDCSPEDLLIEMDRVLRPTGFVIFRDKQPMIDFVKKYLTALHWEAVATADSGSDSVQDSDEVVFIIQKKLWLTSGSFRDTE*