AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0078450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078450 MtrunA17_Chr1g0197551 99.145 117 1 0 1 117 1 117 8.01e-79 252
Msa0078450 MtrunA17_Chr4g0035611 95.726 117 5 0 1 117 1 117 9.99e-77 246
Msa0078450 MtrunA17_Chr2g0331981 39.640 111 67 0 4 114 10 120 2.20e-23 94.4
Msa0078450 MtrunA17_Chr2g0331981 24.684 158 73 2 5 116 95 252 1.22e-12 63.5
Msa0078450 MtrunA17_Chr4g0004241 39.640 111 67 0 4 114 10 120 2.20e-23 94.4
Msa0078450 MtrunA17_Chr4g0004241 25.316 158 72 2 5 116 95 252 6.77e-13 64.3
Msa0078450 MtrunA17_Chr2g0331961 35.652 115 74 0 4 118 12 126 7.77e-22 88.2
Msa0078450 MtrunA17_Chr2g0331961 32.479 117 76 2 5 118 140 256 3.05e-13 64.7
Msa0078450 MtrunA17_Chr2g0281451 29.204 113 80 0 2 114 51 163 8.74e-13 63.9
Msa0078450 MtrunA17_Chr6g0448921 26.364 110 81 0 9 118 59 168 6.52e-12 61.2
Msa0078450 MtrunA17_Chr4g0067151 29.204 113 80 0 2 114 71 183 1.05e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078450 AT2G21390.1 95.726 117 5 0 1 117 1 117 5.91e-77 247
Msa0078450 AT1G62020.1 95.726 117 5 0 1 117 1 117 4.24e-76 244
Msa0078450 AT1G79990.2 41.441 111 65 0 4 114 10 120 2.95e-25 100
Msa0078450 AT1G79990.2 25.316 158 72 2 5 116 95 252 5.02e-13 65.1
Msa0078450 AT1G79990.1 41.441 111 65 0 4 114 10 120 3.01e-25 100
Msa0078450 AT1G79990.1 25.316 158 72 2 5 116 95 252 4.97e-13 65.1
Msa0078450 AT3G15980.3 40.541 111 66 0 4 114 10 120 1.97e-24 97.4
Msa0078450 AT3G15980.3 25.316 158 72 3 5 116 95 252 3.72e-12 62.4
Msa0078450 AT3G15980.6 40.541 111 66 0 4 114 10 120 1.97e-24 97.4
Msa0078450 AT3G15980.6 25.316 158 72 3 5 116 95 252 3.72e-12 62.4
Msa0078450 AT3G15980.2 40.541 111 66 0 4 114 10 120 1.97e-24 97.4
Msa0078450 AT3G15980.2 25.316 158 72 3 5 116 95 252 3.72e-12 62.4
Msa0078450 AT3G15980.4 40.541 111 66 0 4 114 10 120 1.97e-24 97.4
Msa0078450 AT3G15980.4 25.316 158 72 3 5 116 95 252 3.72e-12 62.4
Msa0078450 AT3G15980.1 40.541 111 66 0 4 114 10 120 2.21e-24 97.4
Msa0078450 AT3G15980.1 25.316 158 72 3 5 116 95 252 4.26e-12 62.4
Msa0078450 AT3G15980.7 40.541 111 66 0 4 114 10 120 2.44e-24 97.4
Msa0078450 AT3G15980.7 25.316 158 72 3 5 116 95 252 4.56e-12 62.4
Msa0078450 AT3G15980.5 40.541 111 66 0 4 114 10 120 2.59e-24 97.4
Msa0078450 AT3G15980.5 25.316 158 72 3 5 116 95 252 4.57e-12 62.4
Msa0078450 AT1G52360.4 38.739 111 68 0 4 114 10 120 7.41e-23 93.2
Msa0078450 AT1G52360.4 25.316 158 72 2 5 116 95 252 1.59e-12 63.5
Msa0078450 AT1G52360.1 38.739 111 68 0 4 114 10 120 7.41e-23 93.2
Msa0078450 AT1G52360.1 25.316 158 72 2 5 116 95 252 1.59e-12 63.5
Msa0078450 AT1G52360.2 38.739 111 68 0 4 114 54 164 7.44e-23 93.2
Msa0078450 AT1G52360.2 25.316 158 72 2 5 116 139 296 1.58e-12 63.5
Msa0078450 AT1G52360.3 38.739 111 68 0 4 114 10 120 8.32e-23 92.8
Msa0078450 AT1G52360.3 25.316 158 72 2 5 116 95 252 1.79e-12 63.5
Msa0078450 AT1G11160.3 31.068 103 71 0 12 114 19 121 1.81e-13 66.2
Msa0078450 AT1G11160.3 25.893 112 80 1 6 114 94 205 1.14e-11 61.2
Msa0078450 AT1G11160.4 31.068 103 71 0 12 114 61 163 1.81e-13 66.2
Msa0078450 AT1G11160.4 25.893 112 80 1 6 114 136 247 1.14e-11 61.2
Msa0078450 AT1G11160.2 31.068 103 71 0 12 114 61 163 1.81e-13 66.2
Msa0078450 AT1G11160.2 25.893 112 80 1 6 114 136 247 1.14e-11 61.2
Msa0078450 AT1G11160.1 31.068 103 71 0 12 114 61 163 1.82e-13 66.2
Msa0078450 AT1G11160.1 25.893 112 80 1 6 114 136 247 1.14e-11 61.2
Msa0078450 AT1G61210.3 30.189 106 74 0 9 114 58 163 7.00e-13 64.7
Msa0078450 AT1G61210.3 23.009 113 87 0 2 114 135 247 1.35e-11 60.8
Msa0078450 AT1G61210.2 30.189 106 74 0 9 114 58 163 7.04e-13 64.7
Msa0078450 AT1G61210.2 23.009 113 87 0 2 114 135 247 1.36e-11 60.8
Msa0078450 AT1G61210.1 30.189 106 74 0 9 114 58 163 7.04e-13 64.7
Msa0078450 AT1G61210.1 23.009 113 87 0 2 114 135 247 1.36e-11 60.8
Msa0078450 AT5G16750.1 29.310 116 80 1 3 116 54 169 8.61e-12 61.6
Msa0078450 AT3G49660.1 27.132 129 91 1 4 129 66 194 1.11e-11 60.8
Msa0078450 AT5G08390.1 27.358 106 77 0 9 114 59 164 5.94e-11 58.9

Find 337 sgRNAs with CRISPR-Local

Find 425 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTACTTGGATCAAATTTA+TGG 0.155577 1_2:-55971036 Msa0078450:three_prime_UTR
GTCATGATCGCGGGGTTAAT+TGG 0.169053 1_2:-55974933 Msa0078450:three_prime_UTR
TGGAGATGTTACTGCAATTT+TGG 0.171011 1_2:-55972371 Msa0078450:three_prime_UTR
GAAGTGATTGGCCCCTTCTT+AGG 0.183792 1_2:-55972519 Msa0078450:three_prime_UTR
GTTTCACAATGCCTTGTATA+TGG 0.194998 1_2:-55972731 Msa0078450:three_prime_UTR
TGGATCAAATTTATGGTTAT+AGG 0.211652 1_2:-55971029 Msa0078450:three_prime_UTR
TGCCTTCCCAATGGAGATAA+TGG 0.218548 1_2:-55973273 Msa0078450:three_prime_UTR
GAAACCTTTGTGATATAAAT+TGG 0.228196 1_2:+55973228 None:intergenic
AATGGTGATGTGTGTGATTT+GGG 0.243520 1_2:+55975664 None:intergenic
GTTCGTCGAATTTGTCAATT+AGG 0.253137 1_2:+55975502 None:intergenic
AGGTGATGATTACAAGATTA+AGG 0.256980 1_2:-55975330 Msa0078450:CDS
ACGATTTCTGCGTCCATATA+TGG 0.263429 1_2:+55972200 None:intergenic
GCGAGGATCCATGGACGTTT+AGG 0.269888 1_2:+55975573 None:intergenic
GAAAATATTAACTGAACAAT+AGG 0.272153 1_2:+55971208 None:intergenic
CAGTGGCGTCATTCAGCTTT+GGG 0.272430 1_2:-55975541 Msa0078450:CDS
GATGTGTGTGATTTGGGATT+AGG 0.273420 1_2:+55975670 None:intergenic
GCAAGCTCCTGCTGTCTTAC+TGG 0.279120 1_2:+55971716 None:intergenic
CTTCTTGCTGGCTATTATAA+TGG 0.281783 1_2:+55973398 None:intergenic
GCCGAGAGCATGATAGGTTT+TGG 0.285469 1_2:-55974070 Msa0078450:three_prime_UTR
TCAAGAACGTGTCAAGGTTT+TGG 0.288011 1_2:-55972701 Msa0078450:three_prime_UTR
GTGATTTGGGATTAGGGTTA+TGG 0.291595 1_2:+55975677 None:intergenic
TTACTGGCATGCCAGTAGTT+GGG 0.292790 1_2:+55972224 None:intergenic
GCCGCTAACAGATTCATTTC+AGG 0.293456 1_2:+55974032 None:intergenic
ACTGTTCGCGTTTGGGATAT+TGG 0.294582 1_2:-55975066 Msa0078450:three_prime_UTR
ATGTGTGTGATTTGGGATTA+GGG 0.296495 1_2:+55975671 None:intergenic
GTTGTAGGTGCCGATGCTTC+TGG 0.296819 1_2:-55971332 Msa0078450:three_prime_UTR
TGGATCAGACTGTTCGCGTT+TGG 0.296859 1_2:-55975074 Msa0078450:three_prime_UTR
GGTACGCTGATTGAGCTATA+TGG 0.304810 1_2:-55971288 Msa0078450:three_prime_UTR
AGACACAACAAGATCATCTT+TGG 0.307346 1_2:+55975104 None:intergenic
AATAAATCAATTTCGTATCT+TGG 0.309544 1_2:-55971092 Msa0078450:three_prime_UTR
AGGTGTTTGTTTACTTTGTT+AGG 0.314444 1_2:-55975287 Msa0078450:CDS
GGATCAGACTGTTCGCGTTT+GGG 0.316696 1_2:-55975073 Msa0078450:three_prime_UTR
CTGTCTTTGTTGCTCGTAAT+CGG 0.317323 1_2:-55973680 Msa0078450:three_prime_UTR
TCCTTTCAAGTTGTCTCAGC+TGG 0.326439 1_2:-55971948 Msa0078450:three_prime_UTR
ATGATAGGCAAGTTAAGATT+TGG 0.329967 1_2:-55974867 Msa0078450:three_prime_UTR
TATACAAGGCATTGTGAAAC+TGG 0.330764 1_2:+55972734 None:intergenic
TGCGTCCATATATGGCTTAC+TGG 0.332468 1_2:+55972208 None:intergenic
GGGCTATAGGAAAGAGTCTT+TGG 0.333892 1_2:+55973828 None:intergenic
CTTCAGCAAAGGATTGTTCT+TGG 0.336392 1_2:-55973498 Msa0078450:three_prime_UTR
TTCTGAGAACCCTCCTCTTC+GGG 0.340726 1_2:+55975771 None:intergenic
CATAGTCAAAGAGTATGTTT+TGG 0.344903 1_2:-55971780 Msa0078450:three_prime_UTR
ACGAGGCTCCTGATGGCGAC+TGG 0.345022 1_2:-55972429 Msa0078450:three_prime_UTR
CGAAAGCTTCTCCAAGTTGC+CGG 0.346062 1_2:+55972798 None:intergenic
GCATGCCAGTAAGCCATATA+TGG 0.351671 1_2:-55972213 Msa0078450:three_prime_UTR
CGAGGATCCATGGACGTTTA+GGG 0.351997 1_2:+55975574 None:intergenic
CATTCCGCCGAGAGCATGAT+AGG 0.353857 1_2:-55974076 Msa0078450:three_prime_UTR
TTCAATTTGGCTATAGAAAG+TGG 0.354206 1_2:-55972982 Msa0078450:three_prime_UTR
GAACAGGCAACTTACTTTGT+AGG 0.355867 1_2:-55973548 Msa0078450:three_prime_UTR
ACAGTGGCGTCATTCAGCTT+TGG 0.366042 1_2:-55975542 Msa0078450:CDS
TTGGTGCACAAGCTTCTTGC+TGG 0.366664 1_2:+55973386 None:intergenic
TGTTGTCTGGTCTAATGATA+TGG 0.368499 1_2:-55973448 Msa0078450:three_prime_UTR
CCAGACAACATATTTGATAA+AGG 0.369309 1_2:+55973461 None:intergenic
TAATGGTGATGTGTGTGATT+TGG 0.369666 1_2:+55975663 None:intergenic
AACACGACGGTCCCGTTCGC+GGG 0.371966 1_2:-55975482 Msa0078450:CDS
GTCTGTGATATTTCAGTTGT+AGG 0.376224 1_2:-55971347 Msa0078450:three_prime_UTR
AAGATAAAAGTATTCGCATA+TGG 0.378822 1_2:-55974127 Msa0078450:three_prime_UTR
CGCAGATAACAAATGGGTTT+CGG 0.381412 1_2:+55971468 None:intergenic
GCCTTCCCAATGGAGATAAT+GGG 0.381490 1_2:-55973272 Msa0078450:three_prime_UTR
GCGGCAGAGCATGCAGCGGC+TGG 0.383704 1_2:-55972172 Msa0078450:three_prime_UTR
ATGTTTCTTGATCTTCATAC+TGG 0.384370 1_2:-55972079 Msa0078450:three_prime_UTR
CACAAAACGTGAAGTACAAT+AGG 0.384976 1_2:+55971397 None:intergenic
AAGAGCCTCGGTGAATTTCC+CGG 0.386232 1_2:+55971889 None:intergenic
TATAATCCCATTATCTCCAT+TGG 0.388538 1_2:+55973266 None:intergenic
CTTGCCTTGCTGTCTTCGCT+TGG 0.389584 1_2:+55971546 None:intergenic
TTGTCTCGGCTGCGGATGAT+AGG 0.389615 1_2:-55974882 Msa0078450:three_prime_UTR
CTTCTGAGAACCCTCCTCTT+CGG 0.394926 1_2:+55975770 None:intergenic
CACAAAATGCAGGGCAACCT+CGG 0.397441 1_2:+55973023 None:intergenic
ATCAAGAAACATGGATTTCA+AGG 0.399089 1_2:+55972090 None:intergenic
CAGACAACATATTTGATAAA+GGG 0.399219 1_2:+55973462 None:intergenic
TTTCACTCACTGCAACCTTC+AGG 0.401536 1_2:-55971687 Msa0078450:three_prime_UTR
AAAGAACCCGGTCGTCGAAA+TGG 0.403118 1_2:+55973867 None:intergenic
GATGATCAAACATTCGAATC+TGG 0.405949 1_2:-55975200 Msa0078450:CDS
TGACACAATGATATCCTGTT+TGG 0.407112 1_2:+55974157 None:intergenic
ACCCTTCACTCTGTTACTCT+TGG 0.408012 1_2:+55975608 None:intergenic
TCTCAACCTCTCTTCGTCTC+TGG 0.408030 1_2:-55975444 Msa0078450:CDS
TACTGGCATGCCAGTAGTTG+GGG 0.409452 1_2:+55972225 None:intergenic
AAGTGATTGGCCCCTTCTTA+GGG 0.409918 1_2:-55972518 Msa0078450:three_prime_UTR
TGCTGTTGTTAAGTATGTTT+TGG 0.413230 1_2:-55974959 Msa0078450:three_prime_UTR
ACATATCATACTTGTTCAAT+CGG 0.414015 1_2:-55970965 Msa0078450:three_prime_UTR
TCATGATCGCGGGGTTAATT+GGG 0.415738 1_2:-55974932 Msa0078450:three_prime_UTR
CTTACTGGCATGCCAGTAGT+TGG 0.417299 1_2:+55972223 None:intergenic
CCTTTATCAAATATGTTGTC+TGG 0.418226 1_2:-55973461 Msa0078450:three_prime_UTR
ACATCTTCGAGAGAGGTTAA+TGG 0.419971 1_2:+55975646 None:intergenic
GTTATGCAAGGCATGTTTGA+TGG 0.420278 1_2:-55972496 Msa0078450:three_prime_UTR
AACATTGCCGCTTATTGTCT+CGG 0.420311 1_2:-55974896 Msa0078450:three_prime_UTR
CAGTACAAAGCTGCCCCTCC+TGG 0.420741 1_2:+55971369 None:intergenic
TCCTCACCCCAGTCGCCATC+AGG 0.421144 1_2:+55972421 None:intergenic
TATAGCTCAATCAGCGTACC+TGG 0.423241 1_2:+55971291 None:intergenic
CGAGGCTCCTGATGGCGACT+GGG 0.425349 1_2:-55972428 Msa0078450:three_prime_UTR
TCAACTGCAAGTGATATGAT+TGG 0.427482 1_2:+55972022 None:intergenic
GCTATATTCTATGCAGGAAC+AGG 0.428974 1_2:-55973564 Msa0078450:three_prime_UTR
TCCTTCTGTCCTCGATAGAT+TGG 0.429271 1_2:+55971431 None:intergenic
ATGATTACAAGATTAAGGTT+TGG 0.430375 1_2:-55975325 Msa0078450:CDS
TTTCACAATGCCTTGTATAT+GGG 0.435854 1_2:-55972730 Msa0078450:three_prime_UTR
GTTAAGATTTGGAGGATGAA+TGG 0.438263 1_2:-55974856 Msa0078450:intron
CAATTGATGAGAAAGATTAC+TGG 0.439169 1_2:-55972927 Msa0078450:three_prime_UTR
TTCGTCGAATTTGTCAATTA+GGG 0.440246 1_2:+55975503 None:intergenic
TGATATAAATTGGAACATCC+AGG 0.442273 1_2:+55973238 None:intergenic
ACAAAACGTGAAGTACAATA+GGG 0.443749 1_2:+55971398 None:intergenic
TCCTGATGGCGACTGGGGTG+AGG 0.444082 1_2:-55972422 Msa0078450:three_prime_UTR
AATATAGCATCAGTGGCAAT+TGG 0.445468 1_2:+55973579 None:intergenic
TGAAAATGAACCCCGCGAAC+GGG 0.445544 1_2:+55975471 None:intergenic
ACAAAATGCAGGGCAACCTC+GGG 0.446155 1_2:+55973024 None:intergenic
TTTCATCTTTCACAAAATGC+AGG 0.449007 1_2:+55973013 None:intergenic
GTTGCACCGCAGATAACAAA+TGG 0.449064 1_2:+55971461 None:intergenic
GACAACTTGAAAGGAAGTGC+TGG 0.449380 1_2:+55971956 None:intergenic
TATGTTGCTGCGTCAGTGCA+TGG 0.450149 1_2:-55972652 Msa0078450:three_prime_UTR
ACTGCTCTGTTCACCTTCCC+AGG 0.452982 1_2:-55971309 Msa0078450:three_prime_UTR
TGTGTGCCAACAGAAGCTTT+TGG 0.454710 1_2:+55972265 None:intergenic
TGCAATGGTAACCTGCTTCA+AGG 0.458581 1_2:-55971636 Msa0078450:three_prime_UTR
TCATACAATTCCTTTGATTG+TGG 0.459919 1_2:-55971846 Msa0078450:three_prime_UTR
TCTTGTTGTGTCTGCGTCGT+TGG 0.460881 1_2:-55975094 Msa0078450:three_prime_UTR
ATTCATAGAAACACAAGAAC+CGG 0.461437 1_2:+55973919 None:intergenic
CACTTGCAGTTGAAAGAGGT+TGG 0.462470 1_2:-55972012 Msa0078450:three_prime_UTR
ACTTTGTAGGTCAGAGGATA+GGG 0.463323 1_2:-55973535 Msa0078450:three_prime_UTR
GAACACGACGGTCCCGTTCG+CGG 0.464333 1_2:-55975483 Msa0078450:CDS
TGCATATCAAAGGACGGTTA+TGG 0.464988 1_2:-55973747 Msa0078450:three_prime_UTR
AAACGGCTTGCAGCTGAACT+AGG 0.466008 1_2:-55972613 Msa0078450:three_prime_UTR
CATGATGAAATTGAACGGTT+CGG 0.466638 1_2:+55975249 None:intergenic
GTGAAAATGAACCCCGCGAA+CGG 0.468162 1_2:+55975470 None:intergenic
AAAATATTAACTGAACAATA+GGG 0.468415 1_2:+55971209 None:intergenic
TACAATTCCTTTGATTGTGG+TGG 0.472282 1_2:-55971843 Msa0078450:three_prime_UTR
GAGATGGAGGATTTAGAGTT+GGG 0.475727 1_2:-55972304 Msa0078450:three_prime_UTR
TGCGGATGATATATTGAGGT+TGG 0.475997 1_2:-55975016 Msa0078450:three_prime_UTR
CATATCATACTTGTTCAATC+GGG 0.476870 1_2:-55970964 Msa0078450:three_prime_UTR
GAAGACAGCAAGGCAAGTGC+TGG 0.478624 1_2:-55971540 Msa0078450:three_prime_UTR
CGGGTTTGACAATACAGGTC+GGG 0.479027 1_2:-55972473 Msa0078450:three_prime_UTR
GGTTATAAGTTCTTTACTGC+CGG 0.479656 1_2:-55971908 Msa0078450:three_prime_UTR
AAGGTTCTTTGCCTTGAAGC+AGG 0.480451 1_2:+55971625 None:intergenic
AAGGCAAGTGCTGGCAGCCG+CGG 0.480513 1_2:-55971531 Msa0078450:three_prime_UTR
AGATGAAAATGCACGCAGAT+AGG 0.484156 1_2:+55972048 None:intergenic
ACTTTCCCCTCAGGCAAAGA+TGG 0.485100 1_2:+55972580 None:intergenic
AGACCCGCCTTTGTGGTTAG+TGG 0.486012 1_2:-55973966 Msa0078450:three_prime_UTR
TACTTTGTAGGTCAGAGGAT+AGG 0.487575 1_2:-55973536 Msa0078450:three_prime_UTR
AGATACAAAGGCATGGGAAG+TGG 0.489697 1_2:-55974228 Msa0078450:three_prime_UTR
ACCATGTTATGAACATGATA+AGG 0.490320 1_2:-55973101 Msa0078450:three_prime_UTR
CAAACATTCGAATCTGGAAC+TGG 0.490618 1_2:-55975194 Msa0078450:CDS
GACACAACAAGATCATCTTT+GGG 0.491048 1_2:+55975105 None:intergenic
TGAAGAAGGTGGATGGGAGA+TGG 0.491083 1_2:-55972320 Msa0078450:three_prime_UTR
ATATCACTTGCAGTTGAAAG+AGG 0.491792 1_2:-55972016 Msa0078450:three_prime_UTR
CTTTGATTGTGGTGGAGTCA+AGG 0.492390 1_2:-55971835 Msa0078450:three_prime_UTR
ATAATCCCATTATCTCCATT+GGG 0.492424 1_2:+55973267 None:intergenic
GTACGCTGATTGAGCTATAT+GGG 0.496485 1_2:-55971287 Msa0078450:three_prime_UTR
AGAAAGTGAAAGGTTGTACT+TGG 0.497166 1_2:-55971049 Msa0078450:three_prime_UTR
CAGCTTTGGGATTACCGTAT+GGG 0.497527 1_2:-55975528 Msa0078450:CDS
GCCGCTTATTGTCTCGGCTG+CGG 0.499909 1_2:-55974890 Msa0078450:three_prime_UTR
GACCCGCCTTTGTGGTTAGT+GGG 0.500496 1_2:-55973965 Msa0078450:three_prime_UTR
GGGATATTGGATCGTTGAAA+AGG 0.500627 1_2:-55975053 Msa0078450:three_prime_UTR
GGTGGAGTCAAGGAGGGAAG+TGG 0.502088 1_2:-55971825 Msa0078450:three_prime_UTR
TGCAAGGCATGTTTGATGGC+GGG 0.502682 1_2:-55972492 Msa0078450:three_prime_UTR
ATAGTTGATGTAGATGCAAA+TGG 0.503715 1_2:-55972391 Msa0078450:three_prime_UTR
GGAGATGGAGGATTTAGAGT+TGG 0.503964 1_2:-55972305 Msa0078450:three_prime_UTR
TTCATACACAAGAAAGTGAA+AGG 0.504851 1_2:-55971059 Msa0078450:three_prime_UTR
CCCCTTCTTAGGGTTATGCA+AGG 0.506969 1_2:-55972508 Msa0078450:three_prime_UTR
TTATCTTGTAACCGGCAACT+TGG 0.508467 1_2:-55972809 Msa0078450:three_prime_UTR
TGCCTTGCATAACCCTAAGA+AGG 0.509195 1_2:+55972506 None:intergenic
GCGGATGATATATTGAGGTT+GGG 0.512746 1_2:-55975015 Msa0078450:three_prime_UTR
TCCTGAAATGAATCTGTTAG+CGG 0.513139 1_2:-55974033 Msa0078450:three_prime_UTR
GATGGCGGGTTTGACAATAC+AGG 0.513821 1_2:-55972478 Msa0078450:three_prime_UTR
GAGAGAAAGACCCGCCTTTG+TGG 0.515217 1_2:-55973973 Msa0078450:three_prime_UTR
AAAGATTACTGGTATCGCTT+AGG 0.515250 1_2:-55972916 Msa0078450:three_prime_UTR
TCAGCTTTGGGATTACCGTA+TGG 0.515680 1_2:-55975529 Msa0078450:CDS
AATTTCTTATCCCGAGTTGT+CGG 0.517731 1_2:+55972119 None:intergenic
GCTGAAGAGGAGAGAAACTA+AGG 0.517886 1_2:-55971744 Msa0078450:three_prime_UTR
GCTGAAGAAAATGATGAAGA+AGG 0.521202 1_2:-55972334 Msa0078450:three_prime_UTR
AAAATGATGAAGAAGGTGGA+TGG 0.523173 1_2:-55972327 Msa0078450:three_prime_UTR
TTCATCTTTCACAAAATGCA+GGG 0.524550 1_2:+55973014 None:intergenic
GCTCTTCGCCAAGGTAATGC+TGG 0.527554 1_2:-55972886 Msa0078450:three_prime_UTR
CTTGACTCCACCACAATCAA+AGG 0.528110 1_2:+55971836 None:intergenic
AACAAATGTCTTAAGAGCCT+CGG 0.529714 1_2:+55971877 None:intergenic
GATTGCTTATCTTCAACAGA+AGG 0.530053 1_2:-55973052 Msa0078450:three_prime_UTR
CTTTATTCTACACAAAAGAC+CGG 0.531110 1_2:-55973938 Msa0078450:three_prime_UTR
ATAGGCAAGTTAAGATTTGG+AGG 0.531307 1_2:-55974864 Msa0078450:three_prime_UTR
CCACCGCTGCTAACTTCGCT+AGG 0.531422 1_2:-55971601 Msa0078450:three_prime_UTR
TCCAAAACCTATCATGCTCT+CGG 0.531875 1_2:+55974069 None:intergenic
TGTGATGTTCCATGCCAAAC+AGG 0.531879 1_2:-55974171 Msa0078450:three_prime_UTR
CTCAATCAGCGTACCTGGGA+AGG 0.533314 1_2:+55971296 None:intergenic
AAAATTTGAGAAAATGCTCC+TGG 0.534264 1_2:+55971263 None:intergenic
CGAAACCCATTTGTTATCTG+CGG 0.534959 1_2:-55971467 Msa0078450:three_prime_UTR
TCAAAGGACGGTTATGGTAG+GGG 0.536824 1_2:-55973741 Msa0078450:three_prime_UTR
AGATAAAAGTATTCGCATAT+GGG 0.537328 1_2:-55974126 Msa0078450:three_prime_UTR
GAGACAATAAGCGGCAATGT+TGG 0.537342 1_2:+55974898 None:intergenic
ATCAAAGGACGGTTATGGTA+GGG 0.538337 1_2:-55973742 Msa0078450:three_prime_UTR
AGTACAAAGCTGCCCCTCCT+GGG 0.538762 1_2:+55971370 None:intergenic
CGAAGTTAGCAGCGGTGGCA+AGG 0.539636 1_2:+55971606 None:intergenic
TGAGTTGTATTGCATATCAA+AGG 0.541382 1_2:-55973757 Msa0078450:three_prime_UTR
TAGCATCAGTGGCAATTGGA+AGG 0.542959 1_2:+55973583 None:intergenic
CAAAGCTGCCCCTCCTGGGT+TGG 0.543493 1_2:+55971374 None:intergenic
ATGTTGCTGCGTCAGTGCAT+GGG 0.543511 1_2:-55972651 Msa0078450:three_prime_UTR
AGAAGGTGGATGGGAGATGG+AGG 0.543788 1_2:-55972317 Msa0078450:three_prime_UTR
ATTGCTTATCTTCAACAGAA+GGG 0.544583 1_2:-55973051 Msa0078450:three_prime_UTR
AAATGATGAAGAAGGTGGAT+GGG 0.546354 1_2:-55972326 Msa0078450:three_prime_UTR
GTTATAAGTTCTTTACTGCC+GGG 0.546773 1_2:-55971907 Msa0078450:three_prime_UTR
TGGAGACTAGCGAGGATCCA+TGG 0.547411 1_2:+55975564 None:intergenic
ATCAGTCATATTTCTTTCCG+CGG 0.547998 1_2:+55971514 None:intergenic
GCCTTGCATAACCCTAAGAA+GGG 0.550175 1_2:+55972507 None:intergenic
ACAACTTGAAAGGAAGTGCT+GGG 0.552532 1_2:+55971957 None:intergenic
ACCAAGAGTAACAGAGTGAA+GGG 0.552759 1_2:-55975609 Msa0078450:CDS
GTTTGCAGATCGAGCTGAAG+AGG 0.553337 1_2:-55971757 Msa0078450:three_prime_UTR
CCTAGCGAAGTTAGCAGCGG+TGG 0.553480 1_2:+55971601 None:intergenic
TTTGGAACTATAAGCTGCAT+AGG 0.555072 1_2:-55975307 Msa0078450:CDS
CCTCCTTCACCCGTCATGTG+TGG 0.555219 1_2:-55972541 Msa0078450:three_prime_UTR
AGTACTTCCATTTCGACGAC+CGG 0.557006 1_2:-55973874 Msa0078450:three_prime_UTR
CTTTCCCCTCAGGCAAAGAT+GGG 0.557041 1_2:+55972581 None:intergenic
CAATCACTTCCACACATGAC+GGG 0.557361 1_2:+55972532 None:intergenic
TATCAAAGGACGGTTATGGT+AGG 0.559025 1_2:-55973743 Msa0078450:three_prime_UTR
CCGTCATGTGTGGAAGTGAT+TGG 0.559558 1_2:-55972531 Msa0078450:three_prime_UTR
ATGCAAGGCATGTTTGATGG+CGG 0.560297 1_2:-55972493 Msa0078450:three_prime_UTR
CTCCTGCGGATGATATATTG+AGG 0.561016 1_2:-55975020 Msa0078450:three_prime_UTR
AATTTCATCATGAGAGTCCG+TGG 0.563112 1_2:-55975238 Msa0078450:CDS
GGACAATCCAGTAAGACAGC+AGG 0.563982 1_2:-55971723 Msa0078450:three_prime_UTR
GATATAAATTGGAACATCCA+GGG 0.564042 1_2:+55973239 None:intergenic
ATAAAATATTGCCTTCCCAA+TGG 0.564963 1_2:-55973282 Msa0078450:three_prime_UTR
CGTATATGCTCCCGAAGAGG+AGG 0.565597 1_2:-55975781 Msa0078450:five_prime_UTR
ACTGATGCTATATTCTATGC+AGG 0.565696 1_2:-55973570 Msa0078450:three_prime_UTR
CTACTATACCAGCATTACCT+TGG 0.566389 1_2:+55972878 None:intergenic
CAACTTACTTTGTAGGTCAG+AGG 0.567050 1_2:-55973541 Msa0078450:three_prime_UTR
TCCTTATCATGTTCATAACA+TGG 0.567331 1_2:+55973100 None:intergenic
TCCCCACTAACCACAAAGGC+GGG 0.568277 1_2:+55973963 None:intergenic
AGGTTGCTGAACCGACAACT+CGG 0.568883 1_2:-55972130 Msa0078450:three_prime_UTR
ACCTTCAGGCACCTCACTTG+AGG 0.568888 1_2:-55971673 Msa0078450:three_prime_UTR
TGCTGATGAAGAAGAGGACG+AGG 0.569133 1_2:-55972446 Msa0078450:three_prime_UTR
GAGGCTCCTGATGGCGACTG+GGG 0.569513 1_2:-55972427 Msa0078450:three_prime_UTR
GAGGGAAGTGGATGATGTGA+AGG 0.570752 1_2:-55971813 Msa0078450:three_prime_UTR
CAATGATATCCTGTTTGGCA+TGG 0.572370 1_2:+55974162 None:intergenic
TTGTGTTTGATCTTCAGCAA+AGG 0.572764 1_2:-55973509 Msa0078450:three_prime_UTR
AGAGAGAAGAAAGAAAGAGA+AGG 0.573036 1_2:+55975713 None:intergenic
GACACCCCAAAAGCTTCTGT+TGG 0.574415 1_2:-55972271 Msa0078450:three_prime_UTR
GTTTCCACCCTAAACGTCCA+TGG 0.575277 1_2:-55975581 Msa0078450:CDS
CCAATCACTTCCACACATGA+CGG 0.575426 1_2:+55972531 None:intergenic
GAAATGAATCTGTTAGCGGC+TGG 0.577661 1_2:-55974029 Msa0078450:three_prime_UTR
TCAATTTGGCTATAGAAAGT+GGG 0.577770 1_2:-55972981 Msa0078450:three_prime_UTR
ACCCGCCTTTGTGGTTAGTG+GGG 0.579742 1_2:-55973964 Msa0078450:three_prime_UTR
CTTCCACACATGACGGGTGA+AGG 0.580092 1_2:+55972538 None:intergenic
TGGGATGCAACAAAGCGGAC+TGG 0.580446 1_2:-55974107 Msa0078450:three_prime_UTR
TCAAGAAACATGGATTTCAA+GGG 0.581495 1_2:+55972091 None:intergenic
AGAGACGGTACTTTCCCCTC+AGG 0.581696 1_2:+55972571 None:intergenic
AGACAACATATTTGATAAAG+GGG 0.581710 1_2:+55973463 None:intergenic
CAACCTCTCTTCGTCTCTGG+AGG 0.581935 1_2:-55975441 Msa0078450:intron
TGCATAGAATATAGCATCAG+TGG 0.582342 1_2:+55973572 None:intergenic
CGAAGAGGAGGGTTCTCAGA+AGG 0.582807 1_2:-55975769 Msa0078450:five_prime_UTR
TGGGAAGTGGACACTTTGAG+AGG 0.584231 1_2:-55974215 Msa0078450:three_prime_UTR
TCCCATTATCTCCATTGGGA+AGG 0.585900 1_2:+55973271 None:intergenic
ACTGGCATGCCAGTAGTTGG+GGG 0.586875 1_2:+55972226 None:intergenic
AACCAAGAGTAACAGAGTGA+AGG 0.586987 1_2:-55975610 Msa0078450:CDS
TTGCACCGCAGATAACAAAT+GGG 0.587536 1_2:+55971462 None:intergenic
AACCTCAATATATCATCCGC+AGG 0.587632 1_2:+55975018 None:intergenic
GCCAATCTATCGAGGACAGA+AGG 0.587719 1_2:-55971432 Msa0078450:three_prime_UTR
TTGTGTTCAGATGTAGATGG+TGG 0.589665 1_2:-55973786 Msa0078450:three_prime_UTR
TTCGTCAACATCTTCGAGAG+AGG 0.593363 1_2:+55975639 None:intergenic
TTGAACATCACCCATATACA+AGG 0.595049 1_2:+55972720 None:intergenic
TGCTGCGTCAGTGCATGGGT+TGG 0.595285 1_2:-55972647 Msa0078450:three_prime_UTR
AGCATCAGTGGCAATTGGAA+GGG 0.595677 1_2:+55973584 None:intergenic
GATTGTGGTGGAGTCAAGGA+GGG 0.595914 1_2:-55971831 Msa0078450:three_prime_UTR
GGGAATTGCTGATGAAGAAG+AGG 0.596153 1_2:-55972452 Msa0078450:three_prime_UTR
GAAGAGGACGAGGCTCCTGA+TGG 0.596443 1_2:-55972436 Msa0078450:three_prime_UTR
GGTTGGATGATGTTGCAAAA+CGG 0.596455 1_2:-55972630 Msa0078450:three_prime_UTR
TTGCATCAATAGTTATTACT+CGG 0.598697 1_2:+55973166 None:intergenic
TCCTCGATAGATTGGCACAT+AGG 0.599166 1_2:+55971439 None:intergenic
ACCTCAAGTGAGGTGCCTGA+AGG 0.600260 1_2:+55971672 None:intergenic
GGGTTTGACAATACAGGTCG+GGG 0.601660 1_2:-55972472 Msa0078450:three_prime_UTR
ACAGAGCAGTCCAGAAGCAT+CGG 0.601868 1_2:+55971322 None:intergenic
GTACTTCCATTTCGACGACC+GGG 0.604140 1_2:-55973873 Msa0078450:three_prime_UTR
GAAGAAAATGATGAAGAAGG+TGG 0.604276 1_2:-55972331 Msa0078450:three_prime_UTR
CTGGTATCGCTTAGGAGTCG+AGG 0.605029 1_2:-55972908 Msa0078450:three_prime_UTR
TCATCTAGCACTAGTGTGAG+AGG 0.607052 1_2:-55971983 Msa0078450:three_prime_UTR
TGATTGAGCTATATGGGACC+AGG 0.607063 1_2:-55971281 Msa0078450:three_prime_UTR
TGATGTTCAAGAACGTGTCA+AGG 0.607601 1_2:-55972707 Msa0078450:three_prime_UTR
TCCAGCTGAGACAACTTGAA+AGG 0.608870 1_2:+55971947 None:intergenic
TGATTCAAGCTTAAAGAACC+CGG 0.609536 1_2:+55973855 None:intergenic
ATATCATACTTGTTCAATCG+GGG 0.609969 1_2:-55970963 Msa0078450:three_prime_UTR
AACTTGAAAGGAAGTGCTGG+GGG 0.610877 1_2:+55971959 None:intergenic
CCACACATGACGGGTGAAGG+AGG 0.611441 1_2:+55972541 None:intergenic
TGTTCCAATTTATATCACAA+AGG 0.611658 1_2:-55973232 Msa0078450:three_prime_UTR
TGTCAATTAGGGTTCCCATA+CGG 0.613837 1_2:+55975514 None:intergenic
TTAGCGGCTGGTCACGACAG+TGG 0.614700 1_2:-55974017 Msa0078450:three_prime_UTR
ACACGACGGTCCCGTTCGCG+GGG 0.619176 1_2:-55975481 Msa0078450:CDS
AAAACCAAGCGAAGACAGCA+AGG 0.620843 1_2:-55971550 Msa0078450:three_prime_UTR
AATGTCCCATCTTTGCCTGA+GGG 0.622366 1_2:-55972586 Msa0078450:three_prime_UTR
GGTTGCTGAACCGACAACTC+GGG 0.624392 1_2:-55972129 Msa0078450:three_prime_UTR
GGAGTCGAGGCTCTTCGCCA+AGG 0.624645 1_2:-55972895 Msa0078450:three_prime_UTR
TCACTCGCACTCACAATCCA+CGG 0.625117 1_2:+55975221 None:intergenic
TTGTATTGCATATCAAAGGA+CGG 0.625649 1_2:-55973753 Msa0078450:three_prime_UTR
TTACCTCCAGAGACGAAGAG+AGG 0.626518 1_2:+55975438 None:intergenic
TATCATACTTGTTCAATCGG+GGG 0.626804 1_2:-55970962 Msa0078450:three_prime_UTR
AAGGAAGAGTGCTTCTCCTG+CGG 0.627529 1_2:-55975034 Msa0078450:three_prime_UTR
GACGCAGCAACATAAGCAAG+AGG 0.628143 1_2:+55972661 None:intergenic
ACCTATGTGCCAATCTATCG+AGG 0.628248 1_2:-55971440 Msa0078450:three_prime_UTR
TAAGGAACTCACAGCTCTGT+GGG 0.628814 1_2:-55973083 Msa0078450:three_prime_UTR
TAATGTCCCATCTTTGCCTG+AGG 0.632430 1_2:-55972587 Msa0078450:three_prime_UTR
ATCCCCACTAACCACAAAGG+CGG 0.632859 1_2:+55973962 None:intergenic
TCCGCAGCCGAGACAATAAG+CGG 0.633352 1_2:+55974889 None:intergenic
TGAAGTGAAGAATGACGTGA+TGG 0.638524 1_2:-55972758 Msa0078450:three_prime_UTR
CAAGAAACATGGATTTCAAG+GGG 0.639367 1_2:+55972092 None:intergenic
GGATCCATGGACGTTTAGGG+TGG 0.639666 1_2:+55975577 None:intergenic
ACTTGCGGCAGAGCATGCAG+CGG 0.640282 1_2:-55972176 Msa0078450:three_prime_UTR
GTTAGCATTGCAGAATGCAA+TGG 0.641158 1_2:-55971651 Msa0078450:three_prime_UTR
TAGTAGAGTATGCATATCAG+AGG 0.641236 1_2:-55972861 Msa0078450:three_prime_UTR
GACAAATTCGACGAACACGA+CGG 0.642809 1_2:-55975495 Msa0078450:CDS
ATGTCCCATCTTTGCCTGAG+GGG 0.644752 1_2:-55972585 Msa0078450:three_prime_UTR
AGAAGCATGAAATAGTCAAG+TGG 0.646084 1_2:-55971172 Msa0078450:three_prime_UTR
GCGGGTTTGACAATACAGGT+CGG 0.647948 1_2:-55972474 Msa0078450:three_prime_UTR
ATAGCTCAATCAGCGTACCT+GGG 0.652697 1_2:+55971292 None:intergenic
ATAAGGAACTCACAGCTCTG+TGG 0.653230 1_2:-55973084 Msa0078450:three_prime_UTR
AGTATGAAGATCAAGAAACA+TGG 0.653973 1_2:+55972081 None:intergenic
CAACTTGAAAGGAAGTGCTG+GGG 0.654027 1_2:+55971958 None:intergenic
GAAGGAGGCATCAAGAGAGA+CGG 0.654809 1_2:+55972556 None:intergenic
GACGCAGAAATCGTCACTTG+CGG 0.655813 1_2:-55972191 Msa0078450:three_prime_UTR
GACAACATATTTGATAAAGG+GGG 0.656207 1_2:+55973464 None:intergenic
CCGCTGCTAACTTCGCTAGG+AGG 0.658235 1_2:-55971598 Msa0078450:three_prime_UTR
TTGTCTCGTGGAGAGTGCAT+TGG 0.662611 1_2:+55973367 None:intergenic
GTATATGCTCCCGAAGAGGA+GGG 0.664212 1_2:-55975780 Msa0078450:five_prime_UTR
TGATTGTGGTGGAGTCAAGG+AGG 0.665438 1_2:-55971832 Msa0078450:three_prime_UTR
CTGGCATGCCAGTAGTTGGG+GGG 0.665903 1_2:+55972227 None:intergenic
GGGAAGTGGACACTTTGAGA+GGG 0.666705 1_2:-55974214 Msa0078450:three_prime_UTR
ACTCTCATGATGAAATTGAA+CGG 0.668399 1_2:+55975244 None:intergenic
TGCAATGCTAACCTCAAGTG+AGG 0.671838 1_2:+55971662 None:intergenic
CAAAACGTGAAGTACAATAG+GGG 0.674001 1_2:+55971399 None:intergenic
GAAATTTCGATACTGCAATG+AGG 0.674358 1_2:-55972150 Msa0078450:three_prime_UTR
AGAATCCCCACTAACCACAA+AGG 0.683806 1_2:+55973959 None:intergenic
AATCGTATATGCTCCCGAAG+AGG 0.685514 1_2:-55975784 Msa0078450:five_prime_UTR
TTTGGAAGGTCATGATCGCG+GGG 0.685932 1_2:-55974941 Msa0078450:three_prime_UTR
CCTTGCATAACCCTAAGAAG+GGG 0.686889 1_2:+55972508 None:intergenic
AAAACCTATCATGCTCTCGG+CGG 0.687913 1_2:+55974072 None:intergenic
CAAAATGCAGGGCAACCTCG+GGG 0.693557 1_2:+55973025 None:intergenic
TCAACAGAAGGGCTTCCCCG+AGG 0.701332 1_2:-55973040 Msa0078450:three_prime_UTR
GAAGTGAAGAATGACGTGAT+GGG 0.708340 1_2:-55972757 Msa0078450:three_prime_UTR
GAAATCATAGTTCAACTGTG+TGG 0.714143 1_2:+55971490 None:intergenic
ACTTGAAAGGAAGTGCTGGG+GGG 0.719330 1_2:+55971960 None:intergenic
AAAGCTGAATGACGCCACTG+TGG 0.723712 1_2:+55975544 None:intergenic
AAGAAACATGGATTTCAAGG+GGG 0.727590 1_2:+55972093 None:intergenic
CCTCCTAGCGAAGTTAGCAG+CGG 0.730256 1_2:+55971598 None:intergenic
TACTGCCGGGAAATTCACCG+AGG 0.733859 1_2:-55971894 Msa0078450:three_prime_UTR
CGCCACTGTGGAGACTAGCG+AGG 0.740673 1_2:+55975556 None:intergenic
GCATATGGGATGCAACAAAG+CGG 0.744824 1_2:-55974112 Msa0078450:three_prime_UTR
AGTGGAGCTTGGGATGACAA+TGG 0.753486 1_2:-55973333 Msa0078450:three_prime_UTR
ATCCTCGCTAGTCTCCACAG+TGG 0.818902 1_2:-55975558 Msa0078450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTCTTTAAATTTTTTATA+AGG + chr1_2:55973080-55973099 None:intergenic 10.0%
!!! TTGTATATTTTTTATTTGAT+CGG - chr1_2:55975797-55975816 Msa0078450:five_prime_UTR 10.0%
!!! TTTGATTAATTGAAATTTTC+AGG - chr1_2:55971352-55971371 Msa0078450:three_prime_UTR 15.0%
!!! TTTTTATATTATGTTAACAG+TGG - chr1_2:55971974-55971993 Msa0078450:three_prime_UTR 15.0%
!! TAAATCAAAAAACATAAAGT+CGG + chr1_2:55972192-55972211 None:intergenic 15.0%
!! CTTATAATACATATATTTGT+CGG - chr1_2:55972299-55972318 Msa0078450:three_prime_UTR 15.0%
!! TTATAATACATATATTTGTC+GGG - chr1_2:55972300-55972319 Msa0078450:three_prime_UTR 15.0%
!! AAAATATTAACTGAACAATA+GGG + chr1_2:55975496-55975515 None:intergenic 15.0%
!!! ATTTCTTGTTTGTAATGATA+TGG - chr1_2:55971939-55971958 Msa0078450:three_prime_UTR 20.0%
!! CTTGTATTACATATATTTGT+CGG - chr1_2:55972002-55972021 Msa0078450:three_prime_UTR 20.0%
!! TTGTATTACATATATTTGTC+GGG - chr1_2:55972003-55972022 Msa0078450:three_prime_UTR 20.0%
!!! TATTGCATTTTCAAATAGTA+TGG - chr1_2:55972223-55972242 Msa0078450:three_prime_UTR 20.0%
!! TGTTAACATAATATAACAAC+CGG + chr1_2:55972257-55972276 None:intergenic 20.0%
!! ATATAGTGAAAACATTAACT+TGG - chr1_2:55972392-55972411 Msa0078450:three_prime_UTR 20.0%
!!! CTATTTATTTTCAGATACAA+AGG - chr1_2:55972462-55972481 Msa0078450:three_prime_UTR 20.0%
!! TTGTGAAAGATGAAAAAATT+CGG - chr1_2:55973697-55973716 Msa0078450:three_prime_UTR 20.0%
!!! ATTTTCTCAAATTTTGTTTC+AGG - chr1_2:55975447-55975466 Msa0078450:CDS 20.0%
!! GAAAATATTAACTGAACAAT+AGG + chr1_2:55975497-55975516 None:intergenic 20.0%
!!! TTGTTCAGTTAATATTTTCA+TGG - chr1_2:55975498-55975517 Msa0078450:CDS 20.0%
!!! TGTTCAGTTAATATTTTCAT+GGG - chr1_2:55975499-55975518 Msa0078450:CDS 20.0%
!! AATAAATCAATTTCGTATCT+TGG - chr1_2:55975610-55975629 Msa0078450:CDS 20.0%
! ATGATTACAAGATTAAGGTT+TGG - chr1_2:55971377-55971396 Msa0078450:three_prime_UTR 25.0%
! TGTATTACATATATTTGTCG+GGG - chr1_2:55972004-55972023 Msa0078450:three_prime_UTR 25.0%
! TGAAAATGCAAGTTTAGATT+TGG - chr1_2:55972066-55972085 Msa0078450:three_prime_UTR 25.0%
!!! AAGATAAAAGTATTCGCATA+TGG - chr1_2:55972575-55972594 Msa0078450:three_prime_UTR 25.0%
!!! AGATAAAAGTATTCGCATAT+GGG - chr1_2:55972576-55972595 Msa0078450:three_prime_UTR 25.0%
! AGACAACATATTTGATAAAG+GGG + chr1_2:55973242-55973261 None:intergenic 25.0%
! CAGACAACATATTTGATAAA+GGG + chr1_2:55973243-55973262 None:intergenic 25.0%
! TGTTCCAATTTATATCACAA+AGG - chr1_2:55973470-55973489 Msa0078450:three_prime_UTR 25.0%
! GAAACCTTTGTGATATAAAT+TGG + chr1_2:55973477-55973496 None:intergenic 25.0%
!!! AGCAAACATAATTTTTTGCT+TGG - chr1_2:55973497-55973516 Msa0078450:three_prime_UTR 25.0%
!!! ACATAATTTTTTGCTTGGAT+CGG - chr1_2:55973502-55973521 Msa0078450:three_prime_UTR 25.0%
! TTGCATCAATAGTTATTACT+CGG + chr1_2:55973539-55973558 None:intergenic 25.0%
!!! GTCATATTTTTTCTTGAAGA+GGG + chr1_2:55973583-55973602 None:intergenic 25.0%
! TGAAAAAATTCGGTTCAATT+TGG - chr1_2:55973707-55973726 Msa0078450:three_prime_UTR 25.0%
!! TCTTTTCTTTATCTTGTAAC+CGG - chr1_2:55973885-55973904 Msa0078450:three_prime_UTR 25.0%
!!! ATAGTCAAAGAGTATGTTTT+GGG - chr1_2:55974923-55974942 Msa0078450:three_prime_UTR 25.0%
! TTGTACTTGGATCAAATTTA+TGG - chr1_2:55975666-55975685 Msa0078450:five_prime_UTR 25.0%
! TGGATCAAATTTATGGTTAT+AGG - chr1_2:55975673-55975692 Msa0078450:five_prime_UTR 25.0%
! ACATATCATACTTGTTCAAT+CGG - chr1_2:55975737-55975756 Msa0078450:five_prime_UTR 25.0%
TTCGTCGAATTTGTCAATTA+GGG + chr1_2:55971202-55971221 None:intergenic 30.0%
AGGTGATGATTACAAGATTA+AGG - chr1_2:55971372-55971391 Msa0078450:three_prime_UTR 30.0%
AGGTGTTTGTTTACTTTGTT+AGG - chr1_2:55971415-55971434 Msa0078450:three_prime_UTR 30.0%
ACTCTCATGATGAAATTGAA+CGG + chr1_2:55971461-55971480 None:intergenic 30.0%
! CAGATGAATACTGATCTTTT+TGG - chr1_2:55971711-55971730 Msa0078450:three_prime_UTR 30.0%
! ATGAATACTGATCTTTTTGG+TGG - chr1_2:55971714-55971733 Msa0078450:three_prime_UTR 30.0%
! TGCTGTTGTTAAGTATGTTT+TGG - chr1_2:55971743-55971762 Msa0078450:three_prime_UTR 30.0%
!! GTTGTTAAGTATGTTTTGGA+AGG - chr1_2:55971747-55971766 Msa0078450:three_prime_UTR 30.0%
ATGATAGGCAAGTTAAGATT+TGG - chr1_2:55971835-55971854 Msa0078450:three_prime_UTR 30.0%
TAATGATATGGATGTGATTC+TGG - chr1_2:55971951-55971970 Msa0078450:three_prime_UTR 30.0%
! TTTTGTGACAAGTTATGTTG+TGG - chr1_2:55972036-55972055 Msa0078450:three_prime_UTR 30.0%
AAATGCAAGTTTAGATTTGG+AGG - chr1_2:55972069-55972088 Msa0078450:three_prime_UTR 30.0%
! TTTTTCTTCTAAACGCACTT+GGG + chr1_2:55972119-55972138 None:intergenic 30.0%
!!! TTTTTTCTTCTAAACGCACT+TGG + chr1_2:55972120-55972139 None:intergenic 30.0%
TTCCCAAGTTATCAACTAAT+AGG - chr1_2:55972144-55972163 Msa0078450:three_prime_UTR 30.0%
!! GTCCTATTAGTTGATAACTT+GGG + chr1_2:55972149-55972168 None:intergenic 30.0%
!! TGTCCTATTAGTTGATAACT+TGG + chr1_2:55972150-55972169 None:intergenic 30.0%
AGTTATCAACTAATAGGACA+AGG - chr1_2:55972150-55972169 Msa0078450:three_prime_UTR 30.0%
ACATAATATAACAACCGGAA+TGG + chr1_2:55972252-55972271 None:intergenic 30.0%
ATGCAATAAATGTTGTGTTG+TGG - chr1_2:55972368-55972387 Msa0078450:three_prime_UTR 30.0%
!!! ACTTGGTTTTGTAGTATTTG+AGG - chr1_2:55972409-55972428 Msa0078450:three_prime_UTR 30.0%
! TATTTTCAGATACAAAGGCA+TGG - chr1_2:55972467-55972486 Msa0078450:three_prime_UTR 30.0%
!! ATTTTCAGATACAAAGGCAT+GGG - chr1_2:55972468-55972487 Msa0078450:three_prime_UTR 30.0%
!!! TGGCATGATTGTTTTTAAGT+TGG - chr1_2:55972705-55972724 Msa0078450:three_prime_UTR 30.0%
CTTTATTCTACACAAAAGAC+CGG - chr1_2:55972764-55972783 Msa0078450:three_prime_UTR 30.0%
ATTCATAGAAACACAAGAAC+CGG + chr1_2:55972786-55972805 None:intergenic 30.0%
! AAAGAAATGCATTTTCAGCT+GGG + chr1_2:55972897-55972916 None:intergenic 30.0%
! AAAAGAAATGCATTTTCAGC+TGG + chr1_2:55972898-55972917 None:intergenic 30.0%
TGAGTTGTATTGCATATCAA+AGG - chr1_2:55972945-55972964 Msa0078450:three_prime_UTR 30.0%
TTGTATTGCATATCAAAGGA+CGG - chr1_2:55972949-55972968 Msa0078450:three_prime_UTR 30.0%
AAGATGCAAAAAAAGGTCAT+GGG - chr1_2:55972992-55973011 Msa0078450:three_prime_UTR 30.0%
GACAACATATTTGATAAAGG+GGG + chr1_2:55973241-55973260 None:intergenic 30.0%
CCAGACAACATATTTGATAA+AGG + chr1_2:55973244-55973263 None:intergenic 30.0%
CCTTTATCAAATATGTTGTC+TGG - chr1_2:55973241-55973260 Msa0078450:three_prime_UTR 30.0%
ATAAAATATTGCCTTCCCAA+TGG - chr1_2:55973420-55973439 Msa0078450:three_prime_UTR 30.0%
ATAATCCCATTATCTCCATT+GGG + chr1_2:55973438-55973457 None:intergenic 30.0%
TATAATCCCATTATCTCCAT+TGG + chr1_2:55973439-55973458 None:intergenic 30.0%
TAATGGGATTATAAAAACCC+TGG - chr1_2:55973446-55973465 Msa0078450:three_prime_UTR 30.0%
GATATAAATTGGAACATCCA+GGG + chr1_2:55973466-55973485 None:intergenic 30.0%
TGATATAAATTGGAACATCC+AGG + chr1_2:55973467-55973486 None:intergenic 30.0%
!!! CATAATTTTTTGCTTGGATC+GGG - chr1_2:55973503-55973522 Msa0078450:three_prime_UTR 30.0%
!!! GGTCATATTTTTTCTTGAAG+AGG + chr1_2:55973584-55973603 None:intergenic 30.0%
ACCATGTTATGAACATGATA+AGG - chr1_2:55973601-55973620 Msa0078450:three_prime_UTR 30.0%
TCCTTATCATGTTCATAACA+TGG + chr1_2:55973605-55973624 None:intergenic 30.0%
ATTGCTTATCTTCAACAGAA+GGG - chr1_2:55973651-55973670 Msa0078450:three_prime_UTR 30.0%
TTCATCTTTCACAAAATGCA+GGG + chr1_2:55973691-55973710 None:intergenic 30.0%
TTTCATCTTTCACAAAATGC+AGG + chr1_2:55973692-55973711 None:intergenic 30.0%
TTCAATTTGGCTATAGAAAG+TGG - chr1_2:55973720-55973739 Msa0078450:three_prime_UTR 30.0%
TCAATTTGGCTATAGAAAGT+GGG - chr1_2:55973721-55973740 Msa0078450:three_prime_UTR 30.0%
CAATTGATGAGAAAGATTAC+TGG - chr1_2:55973775-55973794 Msa0078450:three_prime_UTR 30.0%
! AGAGGACAAAAAATTTTGAG+AGG - chr1_2:55973859-55973878 Msa0078450:three_prime_UTR 30.0%
TTTCACAATGCCTTGTATAT+GGG - chr1_2:55973972-55973991 Msa0078450:three_prime_UTR 30.0%
! ATAGTTGATGTAGATGCAAA+TGG - chr1_2:55974311-55974330 Msa0078450:intron 30.0%
TCAAGAAACATGGATTTCAA+GGG + chr1_2:55974614-55974633 None:intergenic 30.0%
ATCAAGAAACATGGATTTCA+AGG + chr1_2:55974615-55974634 None:intergenic 30.0%
AGTATGAAGATCAAGAAACA+TGG + chr1_2:55974624-55974643 None:intergenic 30.0%
ATGTTTCTTGATCTTCATAC+TGG - chr1_2:55974623-55974642 Msa0078450:intron 30.0%
TCATACAATTCCTTTGATTG+TGG - chr1_2:55974856-55974875 Msa0078450:intron 30.0%
!! CATAGTCAAAGAGTATGTTT+TGG - chr1_2:55974922-55974941 Msa0078450:three_prime_UTR 30.0%
ACAAAACGTGAAGTACAATA+GGG + chr1_2:55975307-55975326 None:intergenic 30.0%
AAAATTTGAGAAAATGCTCC+TGG + chr1_2:55975442-55975461 None:intergenic 30.0%
! TTAATATTTTCATGGGACTG+TGG - chr1_2:55975506-55975525 Msa0078450:CDS 30.0%
TTCATACACAAGAAAGTGAA+AGG - chr1_2:55975643-55975662 Msa0078450:exon 30.0%
CATATCATACTTGTTCAATC+GGG - chr1_2:55975738-55975757 Msa0078450:five_prime_UTR 30.0%
ATATCATACTTGTTCAATCG+GGG - chr1_2:55975739-55975758 Msa0078450:five_prime_UTR 30.0%
AGAGAGAAGAAAGAAAGAGA+AGG + chr1_2:55970992-55971011 None:intergenic 35.0%
! ATGTGTGTGATTTGGGATTA+GGG + chr1_2:55971034-55971053 None:intergenic 35.0%
! AATGGTGATGTGTGTGATTT+GGG + chr1_2:55971041-55971060 None:intergenic 35.0%
! TAATGGTGATGTGTGTGATT+TGG + chr1_2:55971042-55971061 None:intergenic 35.0%
GTTCGTCGAATTTGTCAATT+AGG + chr1_2:55971203-55971222 None:intergenic 35.0%
! TTTGGAACTATAAGCTGCAT+AGG - chr1_2:55971395-55971414 Msa0078450:three_prime_UTR 35.0%
CATGATGAAATTGAACGGTT+CGG + chr1_2:55971456-55971475 None:intergenic 35.0%
GATGATCAAACATTCGAATC+TGG - chr1_2:55971502-55971521 Msa0078450:three_prime_UTR 35.0%
!!! ACTTGCATTTCTGTTTTGAC+TGG - chr1_2:55971540-55971559 Msa0078450:three_prime_UTR 35.0%
GACACAACAAGATCATCTTT+GGG + chr1_2:55971600-55971619 None:intergenic 35.0%
AGACACAACAAGATCATCTT+TGG + chr1_2:55971601-55971620 None:intergenic 35.0%
ATAGGCAAGTTAAGATTTGG+AGG - chr1_2:55971838-55971857 Msa0078450:three_prime_UTR 35.0%
GTTAAGATTTGGAGGATGAA+TGG - chr1_2:55971846-55971865 Msa0078450:three_prime_UTR 35.0%
GTTTAGATTTGGAGGATGAA+TGG - chr1_2:55972077-55972096 Msa0078450:three_prime_UTR 35.0%
AAATAGTATGGATGCCATTC+CGG - chr1_2:55972235-55972254 Msa0078450:three_prime_UTR 35.0%
TGACACAATGATATCCTGTT+TGG + chr1_2:55972548-55972567 None:intergenic 35.0%
TCCTGAAATGAATCTGTTAG+CGG - chr1_2:55972669-55972688 Msa0078450:three_prime_UTR 35.0%
TGATTCAAGCTTAAAGAACC+CGG + chr1_2:55972850-55972869 None:intergenic 35.0%
! CTTTTGTGTTCAGATGTAGA+TGG - chr1_2:55972913-55972932 Msa0078450:three_prime_UTR 35.0%
CAAGATGCAAAAAAAGGTCA+TGG - chr1_2:55972991-55973010 Msa0078450:three_prime_UTR 35.0%
AGATGCAAAAAAAGGTCATG+GGG - chr1_2:55972993-55973012 Msa0078450:three_prime_UTR 35.0%
AATATAGCATCAGTGGCAAT+TGG + chr1_2:55973126-55973145 None:intergenic 35.0%
TGCATAGAATATAGCATCAG+TGG + chr1_2:55973133-55973152 None:intergenic 35.0%
ACTGATGCTATATTCTATGC+AGG - chr1_2:55973132-55973151 Msa0078450:three_prime_UTR 35.0%
TTGTGTTTGATCTTCAGCAA+AGG - chr1_2:55973193-55973212 Msa0078450:three_prime_UTR 35.0%
TGTTGTCTGGTCTAATGATA+TGG - chr1_2:55973254-55973273 Msa0078450:three_prime_UTR 35.0%
! CTTCTTGCTGGCTATTATAA+TGG + chr1_2:55973307-55973326 None:intergenic 35.0%
GATTGCTTATCTTCAACAGA+AGG - chr1_2:55973650-55973669 Msa0078450:three_prime_UTR 35.0%
AAAGATTACTGGTATCGCTT+AGG - chr1_2:55973786-55973805 Msa0078450:three_prime_UTR 35.0%
TAGTAGAGTATGCATATCAG+AGG - chr1_2:55973841-55973860 Msa0078450:three_prime_UTR 35.0%
!! TATACAAGGCATTGTGAAAC+TGG + chr1_2:55973971-55973990 None:intergenic 35.0%
GTTTCACAATGCCTTGTATA+TGG - chr1_2:55973971-55973990 Msa0078450:three_prime_UTR 35.0%
TTGAACATCACCCATATACA+AGG + chr1_2:55973985-55974004 None:intergenic 35.0%
! TGGAGATGTTACTGCAATTT+TGG - chr1_2:55974331-55974350 Msa0078450:intron 35.0%
!! GTTACTGCAATTTTGGAAGA+TGG - chr1_2:55974338-55974357 Msa0078450:intron 35.0%
GCTGAAGAAAATGATGAAGA+AGG - chr1_2:55974368-55974387 Msa0078450:intron 35.0%
GAAGAAAATGATGAAGAAGG+TGG - chr1_2:55974371-55974390 Msa0078450:intron 35.0%
AAAATGATGAAGAAGGTGGA+TGG - chr1_2:55974375-55974394 Msa0078450:intron 35.0%
AAATGATGAAGAAGGTGGAT+GGG - chr1_2:55974376-55974395 Msa0078450:intron 35.0%
GAAATTTCGATACTGCAATG+AGG - chr1_2:55974552-55974571 Msa0078450:intron 35.0%
AATTTCTTATCCCGAGTTGT+CGG + chr1_2:55974586-55974605 None:intergenic 35.0%
AAGAAACATGGATTTCAAGG+GGG + chr1_2:55974612-55974631 None:intergenic 35.0%
CAAGAAACATGGATTTCAAG+GGG + chr1_2:55974613-55974632 None:intergenic 35.0%
TCAACTGCAAGTGATATGAT+TGG + chr1_2:55974683-55974702 None:intergenic 35.0%
ATATCACTTGCAGTTGAAAG+AGG - chr1_2:55974686-55974705 Msa0078450:intron 35.0%
GGTTATAAGTTCTTTACTGC+CGG - chr1_2:55974794-55974813 Msa0078450:intron 35.0%
GTTATAAGTTCTTTACTGCC+GGG - chr1_2:55974795-55974814 Msa0078450:intron 35.0%
AACAAATGTCTTAAGAGCCT+CGG + chr1_2:55974828-55974847 None:intergenic 35.0%
TACAATTCCTTTGATTGTGG+TGG - chr1_2:55974859-55974878 Msa0078450:three_prime_UTR 35.0%
ATCAGTCATATTTCTTTCCG+CGG + chr1_2:55975191-55975210 None:intergenic 35.0%
GAAATCATAGTTCAACTGTG+TGG + chr1_2:55975215-55975234 None:intergenic 35.0%
CAAAACGTGAAGTACAATAG+GGG + chr1_2:55975306-55975325 None:intergenic 35.0%
CACAAAACGTGAAGTACAAT+AGG + chr1_2:55975308-55975327 None:intergenic 35.0%
GTCTGTGATATTTCAGTTGT+AGG - chr1_2:55975355-55975374 Msa0078450:intron 35.0%
! AGAAGCATGAAATAGTCAAG+TGG - chr1_2:55975530-55975549 Msa0078450:CDS 35.0%
AGAAAGTGAAAGGTTGTACT+TGG - chr1_2:55975653-55975672 Msa0078450:five_prime_UTR 35.0%
TATCATACTTGTTCAATCGG+GGG - chr1_2:55975740-55975759 Msa0078450:five_prime_UTR 35.0%
! GTGATTTGGGATTAGGGTTA+TGG + chr1_2:55971028-55971047 None:intergenic 40.0%
! GATGTGTGTGATTTGGGATT+AGG + chr1_2:55971035-55971054 None:intergenic 40.0%
ACATCTTCGAGAGAGGTTAA+TGG + chr1_2:55971059-55971078 None:intergenic 40.0%
AACCAAGAGTAACAGAGTGA+AGG - chr1_2:55971092-55971111 Msa0078450:three_prime_UTR 40.0%
ACCAAGAGTAACAGAGTGAA+GGG - chr1_2:55971093-55971112 Msa0078450:three_prime_UTR 40.0%
TGTCAATTAGGGTTCCCATA+CGG + chr1_2:55971191-55971210 None:intergenic 40.0%
AATTTCATCATGAGAGTCCG+TGG - chr1_2:55971464-55971483 Msa0078450:three_prime_UTR 40.0%
! CAAACATTCGAATCTGGAAC+TGG - chr1_2:55971508-55971527 Msa0078450:three_prime_UTR 40.0%
GGGATATTGGATCGTTGAAA+AGG - chr1_2:55971649-55971668 Msa0078450:three_prime_UTR 40.0%
AACCTCAATATATCATCCGC+AGG + chr1_2:55971687-55971706 None:intergenic 40.0%
TGCGGATGATATATTGAGGT+TGG - chr1_2:55971686-55971705 Msa0078450:three_prime_UTR 40.0%
GCGGATGATATATTGAGGTT+GGG - chr1_2:55971687-55971706 Msa0078450:three_prime_UTR 40.0%
! AACATTGCCGCTTATTGTCT+CGG - chr1_2:55971806-55971825 Msa0078450:three_prime_UTR 40.0%
ACATGTGTTTGAGTGTGTGT+AGG - chr1_2:55972274-55972293 Msa0078450:three_prime_UTR 40.0%
CAATGATATCCTGTTTGGCA+TGG + chr1_2:55972543-55972562 None:intergenic 40.0%
TCCAAAACCTATCATGCTCT+CGG + chr1_2:55972636-55972655 None:intergenic 40.0%
TTGTGTTCAGATGTAGATGG+TGG - chr1_2:55972916-55972935 Msa0078450:three_prime_UTR 40.0%
TGCATATCAAAGGACGGTTA+TGG - chr1_2:55972955-55972974 Msa0078450:three_prime_UTR 40.0%
TATCAAAGGACGGTTATGGT+AGG - chr1_2:55972959-55972978 Msa0078450:three_prime_UTR 40.0%
ATCAAAGGACGGTTATGGTA+GGG - chr1_2:55972960-55972979 Msa0078450:three_prime_UTR 40.0%
GACGTGCAAGATGCAAAAAA+AGG - chr1_2:55972985-55973004 Msa0078450:three_prime_UTR 40.0%
GATGCAAAAAAAGGTCATGG+GGG - chr1_2:55972994-55973013 Msa0078450:three_prime_UTR 40.0%
CTGTCTTTGTTGCTCGTAAT+CGG - chr1_2:55973022-55973041 Msa0078450:three_prime_UTR 40.0%
GCTATATTCTATGCAGGAAC+AGG - chr1_2:55973138-55973157 Msa0078450:three_prime_UTR 40.0%
GAACAGGCAACTTACTTTGT+AGG - chr1_2:55973154-55973173 Msa0078450:three_prime_UTR 40.0%
CAACTTACTTTGTAGGTCAG+AGG - chr1_2:55973161-55973180 Msa0078450:three_prime_UTR 40.0%
TACTTTGTAGGTCAGAGGAT+AGG - chr1_2:55973166-55973185 Msa0078450:three_prime_UTR 40.0%
ACTTTGTAGGTCAGAGGATA+GGG - chr1_2:55973167-55973186 Msa0078450:three_prime_UTR 40.0%
CTTCAGCAAAGGATTGTTCT+TGG - chr1_2:55973204-55973223 Msa0078450:three_prime_UTR 40.0%
CATATTTGATAAAGGGGGTC+TGG + chr1_2:55973236-55973255 None:intergenic 40.0%
!! TTTTTACACGGATTGTCTCG+TGG + chr1_2:55973350-55973369 None:intergenic 40.0%
GAGACAATCCGTGTAAAAAG+TGG - chr1_2:55973351-55973370 Msa0078450:three_prime_UTR 40.0%
!!! ATTTTTTGCTTGGATCGGGA+TGG - chr1_2:55973507-55973526 Msa0078450:three_prime_UTR 40.0%
CTACTATACCAGCATTACCT+TGG + chr1_2:55973827-55973846 None:intergenic 40.0%
TTATCTTGTAACCGGCAACT+TGG - chr1_2:55973893-55973912 Msa0078450:three_prime_UTR 40.0%
TGAAGTGAAGAATGACGTGA+TGG - chr1_2:55973944-55973963 Msa0078450:three_prime_UTR 40.0%
GAAGTGAAGAATGACGTGAT+GGG - chr1_2:55973945-55973964 Msa0078450:three_prime_UTR 40.0%
TGATGTTCAAGAACGTGTCA+AGG - chr1_2:55973995-55974014 Msa0078450:three_prime_UTR 40.0%
! TCAAGAACGTGTCAAGGTTT+TGG - chr1_2:55974001-55974020 Msa0078450:three_prime_UTR 40.0%
!!! GTCAAGGTTTTGGAGAATGT+CGG - chr1_2:55974011-55974030 Msa0078450:three_prime_UTR 40.0%
GGTTGGATGATGTTGCAAAA+CGG - chr1_2:55974072-55974091 Msa0078450:three_prime_UTR 40.0%
GTTATGCAAGGCATGTTTGA+TGG - chr1_2:55974206-55974225 Msa0078450:three_prime_UTR 40.0%
! GAGATGGAGGATTTAGAGTT+GGG - chr1_2:55974398-55974417 Msa0078450:intron 40.0%
ACGATTTCTGCGTCCATATA+TGG + chr1_2:55974505-55974524 None:intergenic 40.0%
AGATGAAAATGCACGCAGAT+AGG + chr1_2:55974657-55974676 None:intergenic 40.0%
!! ACAACTTGAAAGGAAGTGCT+GGG + chr1_2:55974748-55974767 None:intergenic 40.0%
CTGGATGAAAAACTTAGAGC+TGG - chr1_2:55974773-55974792 Msa0078450:intron 40.0%
GTTAGCATTGCAGAATGCAA+TGG - chr1_2:55975051-55975070 Msa0078450:three_prime_UTR 40.0%
!! TTCGCTTGGTTTTCAATGGT+GGG + chr1_2:55975145-55975164 None:intergenic 40.0%
!! TGTCTTCGCTTGGTTTTCAA+TGG + chr1_2:55975149-55975168 None:intergenic 40.0%
! CGCAGATAACAAATGGGTTT+CGG + chr1_2:55975237-55975256 None:intergenic 40.0%
!! CGAAACCCATTTGTTATCTG+CGG - chr1_2:55975235-55975254 Msa0078450:CDS 40.0%
TTGCACCGCAGATAACAAAT+GGG + chr1_2:55975243-55975262 None:intergenic 40.0%
! GTACGCTGATTGAGCTATAT+GGG - chr1_2:55975415-55975434 Msa0078450:intron 40.0%
AATCGTATATGCTCCCGAAG+AGG - chr1_2:55970918-55970937 Msa0078450:three_prime_UTR 45.0%
TTCGTCAACATCTTCGAGAG+AGG + chr1_2:55971066-55971085 None:intergenic 45.0%
ACCCTTCACTCTGTTACTCT+TGG + chr1_2:55971097-55971116 None:intergenic 45.0%
!! TCAGCTTTGGGATTACCGTA+TGG - chr1_2:55971173-55971192 Msa0078450:three_prime_UTR 45.0%
!! CAGCTTTGGGATTACCGTAT+GGG - chr1_2:55971174-55971193 Msa0078450:three_prime_UTR 45.0%
GACAAATTCGACGAACACGA+CGG - chr1_2:55971207-55971226 Msa0078450:three_prime_UTR 45.0%
! ACTGTTCGCGTTTGGGATAT+TGG - chr1_2:55971636-55971655 Msa0078450:three_prime_UTR 45.0%
CTCCTGCGGATGATATATTG+AGG - chr1_2:55971682-55971701 Msa0078450:three_prime_UTR 45.0%
!!! GTTTTGGAAGGTCATGATCG+CGG - chr1_2:55971759-55971778 Msa0078450:three_prime_UTR 45.0%
!! TTTTGGAAGGTCATGATCGC+GGG - chr1_2:55971760-55971779 Msa0078450:three_prime_UTR 45.0%
TCATGATCGCGGGGTTAATT+GGG - chr1_2:55971770-55971789 Msa0078450:three_prime_UTR 45.0%
GAGACAATAAGCGGCAATGT+TGG + chr1_2:55971807-55971826 None:intergenic 45.0%
! AGATACAAAGGCATGGGAAG+TGG - chr1_2:55972474-55972493 Msa0078450:three_prime_UTR 45.0%
TGTGATGTTCCATGCCAAAC+AGG - chr1_2:55972531-55972550 Msa0078450:three_prime_UTR 45.0%
GCATATGGGATGCAACAAAG+CGG - chr1_2:55972590-55972609 Msa0078450:three_prime_UTR 45.0%
AAAACCTATCATGCTCTCGG+CGG + chr1_2:55972633-55972652 None:intergenic 45.0%
GCCGCTAACAGATTCATTTC+AGG + chr1_2:55972673-55972692 None:intergenic 45.0%
GAAATGAATCTGTTAGCGGC+TGG - chr1_2:55972673-55972692 Msa0078450:three_prime_UTR 45.0%
AGAATCCCCACTAACCACAA+AGG + chr1_2:55972746-55972765 None:intergenic 45.0%
AGTACTTCCATTTCGACGAC+CGG - chr1_2:55972828-55972847 Msa0078450:three_prime_UTR 45.0%
GGGCTATAGGAAAGAGTCTT+TGG + chr1_2:55972877-55972896 None:intergenic 45.0%
! TGCATTTTCAGCTGGGCTAT+AGG + chr1_2:55972890-55972909 None:intergenic 45.0%
TCAAAGGACGGTTATGGTAG+GGG - chr1_2:55972961-55972980 Msa0078450:three_prime_UTR 45.0%
AGCATCAGTGGCAATTGGAA+GGG + chr1_2:55973121-55973140 None:intergenic 45.0%
TAGCATCAGTGGCAATTGGA+AGG + chr1_2:55973122-55973141 None:intergenic 45.0%
TCCGTGTAAAAAGTGGAGCT+TGG - chr1_2:55973358-55973377 Msa0078450:three_prime_UTR 45.0%
!!! CCCAAGCTCCACTTTTTACA+CGG + chr1_2:55973362-55973381 None:intergenic 45.0%
CCGTGTAAAAAGTGGAGCTT+GGG - chr1_2:55973359-55973378 Msa0078450:three_prime_UTR 45.0%
TGCCTTCCCAATGGAGATAA+TGG - chr1_2:55973429-55973448 Msa0078450:three_prime_UTR 45.0%
GCCTTCCCAATGGAGATAAT+GGG - chr1_2:55973430-55973449 Msa0078450:three_prime_UTR 45.0%
TCCCATTATCTCCATTGGGA+AGG + chr1_2:55973434-55973453 None:intergenic 45.0%
ATAAGGAACTCACAGCTCTG+TGG - chr1_2:55973618-55973637 Msa0078450:three_prime_UTR 45.0%
TAAGGAACTCACAGCTCTGT+GGG - chr1_2:55973619-55973638 Msa0078450:three_prime_UTR 45.0%
TAATGTCCCATCTTTGCCTG+AGG - chr1_2:55974115-55974134 Msa0078450:three_prime_UTR 45.0%
AATGTCCCATCTTTGCCTGA+GGG - chr1_2:55974116-55974135 Msa0078450:three_prime_UTR 45.0%
CAATCACTTCCACACATGAC+GGG + chr1_2:55974173-55974192 None:intergenic 45.0%
CCAATCACTTCCACACATGA+CGG + chr1_2:55974174-55974193 None:intergenic 45.0%
! AAGTGATTGGCCCCTTCTTA+GGG - chr1_2:55974184-55974203 Msa0078450:three_prime_UTR 45.0%
CCTTGCATAACCCTAAGAAG+GGG + chr1_2:55974197-55974216 None:intergenic 45.0%
GCCTTGCATAACCCTAAGAA+GGG + chr1_2:55974198-55974217 None:intergenic 45.0%
TGCCTTGCATAACCCTAAGA+AGG + chr1_2:55974199-55974218 None:intergenic 45.0%
ATGCAAGGCATGTTTGATGG+CGG - chr1_2:55974209-55974228 Msa0078450:three_prime_UTR 45.0%
GGGAATTGCTGATGAAGAAG+AGG - chr1_2:55974250-55974269 Msa0078450:intron 45.0%
! GGAGATGGAGGATTTAGAGT+TGG - chr1_2:55974397-55974416 Msa0078450:intron 45.0%
! TGTGCCAACAGAAGCTTTTG+GGG + chr1_2:55974438-55974457 None:intergenic 45.0%
! GTGTGCCAACAGAAGCTTTT+GGG + chr1_2:55974439-55974458 None:intergenic 45.0%
! TGTGTGCCAACAGAAGCTTT+TGG + chr1_2:55974440-55974459 None:intergenic 45.0%
! GTTTTTATCCCCCCAACTAC+TGG - chr1_2:55974467-55974486 Msa0078450:intron 45.0%
TTACTGGCATGCCAGTAGTT+GGG + chr1_2:55974481-55974500 None:intergenic 45.0%
GCATGCCAGTAAGCCATATA+TGG - chr1_2:55974489-55974508 Msa0078450:intron 45.0%
TGCGTCCATATATGGCTTAC+TGG + chr1_2:55974497-55974516 None:intergenic 45.0%
CACTTGCAGTTGAAAGAGGT+TGG - chr1_2:55974690-55974709 Msa0078450:intron 45.0%
TCATCTAGCACTAGTGTGAG+AGG - chr1_2:55974719-55974738 Msa0078450:intron 45.0%
!! AACTTGAAAGGAAGTGCTGG+GGG + chr1_2:55974746-55974765 None:intergenic 45.0%
!! CAACTTGAAAGGAAGTGCTG+GGG + chr1_2:55974747-55974766 None:intergenic 45.0%
! GACAACTTGAAAGGAAGTGC+TGG + chr1_2:55974749-55974768 None:intergenic 45.0%
!! TCCTTTCAAGTTGTCTCAGC+TGG - chr1_2:55974754-55974773 Msa0078450:intron 45.0%
TCCAGCTGAGACAACTTGAA+AGG + chr1_2:55974758-55974777 None:intergenic 45.0%
CTTGACTCCACCACAATCAA+AGG + chr1_2:55974869-55974888 None:intergenic 45.0%
! CTTTGATTGTGGTGGAGTCA+AGG - chr1_2:55974867-55974886 Msa0078450:three_prime_UTR 45.0%
GCTGAAGAGGAGAGAAACTA+AGG - chr1_2:55974958-55974977 Msa0078450:three_prime_UTR 45.0%
TTTCACTCACTGCAACCTTC+AGG - chr1_2:55975015-55975034 Msa0078450:three_prime_UTR 45.0%
TGCAATGCTAACCTCAAGTG+AGG + chr1_2:55975043-55975062 None:intergenic 45.0%
TGCAATGGTAACCTGCTTCA+AGG - chr1_2:55975066-55975085 Msa0078450:three_prime_UTR 45.0%
AAGGTTCTTTGCCTTGAAGC+AGG + chr1_2:55975080-55975099 None:intergenic 45.0%
!! CTTCGCTTGGTTTTCAATGG+TGG + chr1_2:55975146-55975165 None:intergenic 45.0%
AAAACCAAGCGAAGACAGCA+AGG - chr1_2:55975152-55975171 Msa0078450:exon 45.0%
GTTGCACCGCAGATAACAAA+TGG + chr1_2:55975244-55975263 None:intergenic 45.0%
ACCTATGTGCCAATCTATCG+AGG - chr1_2:55975262-55975281 Msa0078450:CDS 45.0%
TCCTCGATAGATTGGCACAT+AGG + chr1_2:55975266-55975285 None:intergenic 45.0%
TCCTTCTGTCCTCGATAGAT+TGG + chr1_2:55975274-55975293 None:intergenic 45.0%
ATAGCTCAATCAGCGTACCT+GGG + chr1_2:55975413-55975432 None:intergenic 45.0%
TATAGCTCAATCAGCGTACC+TGG + chr1_2:55975414-55975433 None:intergenic 45.0%
! GGTACGCTGATTGAGCTATA+TGG - chr1_2:55975414-55975433 Msa0078450:intron 45.0%
TGATTGAGCTATATGGGACC+AGG - chr1_2:55975421-55975440 Msa0078450:intron 45.0%
GTATATGCTCCCGAAGAGGA+GGG - chr1_2:55970922-55970941 Msa0078450:three_prime_UTR 50.0%
! TTCTGAGAACCCTCCTCTTC+GGG + chr1_2:55970934-55970953 None:intergenic 50.0%
! CTTCTGAGAACCCTCCTCTT+CGG + chr1_2:55970935-55970954 None:intergenic 50.0%
GTTTCCACCCTAAACGTCCA+TGG - chr1_2:55971121-55971140 Msa0078450:three_prime_UTR 50.0%
CGAGGATCCATGGACGTTTA+GGG + chr1_2:55971131-55971150 None:intergenic 50.0%
AAAGCTGAATGACGCCACTG+TGG + chr1_2:55971161-55971180 None:intergenic 50.0%
ACAGTGGCGTCATTCAGCTT+TGG - chr1_2:55971160-55971179 Msa0078450:three_prime_UTR 50.0%
CAGTGGCGTCATTCAGCTTT+GGG - chr1_2:55971161-55971180 Msa0078450:three_prime_UTR 50.0%
TGAAAATGAACCCCGCGAAC+GGG + chr1_2:55971234-55971253 None:intergenic 50.0%
GTGAAAATGAACCCCGCGAA+CGG + chr1_2:55971235-55971254 None:intergenic 50.0%
TCTCAACCTCTCTTCGTCTC+TGG - chr1_2:55971258-55971277 Msa0078450:three_prime_UTR 50.0%
TTACCTCCAGAGACGAAGAG+AGG + chr1_2:55971267-55971286 None:intergenic 50.0%
TCACTCGCACTCACAATCCA+CGG + chr1_2:55971484-55971503 None:intergenic 50.0%
! TCTTGTTGTGTCTGCGTCGT+TGG - chr1_2:55971608-55971627 Msa0078450:three_prime_UTR 50.0%
TGGATCAGACTGTTCGCGTT+TGG - chr1_2:55971628-55971647 Msa0078450:three_prime_UTR 50.0%
GGATCAGACTGTTCGCGTTT+GGG - chr1_2:55971629-55971648 Msa0078450:three_prime_UTR 50.0%
!! AAGGAAGAGTGCTTCTCCTG+CGG - chr1_2:55971668-55971687 Msa0078450:three_prime_UTR 50.0%
TTTGGAAGGTCATGATCGCG+GGG - chr1_2:55971761-55971780 Msa0078450:three_prime_UTR 50.0%
GTCATGATCGCGGGGTTAAT+TGG - chr1_2:55971769-55971788 Msa0078450:three_prime_UTR 50.0%
TGGGAAGTGGACACTTTGAG+AGG - chr1_2:55972487-55972506 Msa0078450:three_prime_UTR 50.0%
! GGGAAGTGGACACTTTGAGA+GGG - chr1_2:55972488-55972507 Msa0078450:three_prime_UTR 50.0%
!! GCCGAGAGCATGATAGGTTT+TGG - chr1_2:55972632-55972651 Msa0078450:three_prime_UTR 50.0%
ATCCCCACTAACCACAAAGG+CGG + chr1_2:55972743-55972762 None:intergenic 50.0%
GTACTTCCATTTCGACGACC+GGG - chr1_2:55972829-55972848 Msa0078450:three_prime_UTR 50.0%
AAAGAACCCGGTCGTCGAAA+TGG + chr1_2:55972838-55972857 None:intergenic 50.0%
TTGGTGCACAAGCTTCTTGC+TGG + chr1_2:55973319-55973338 None:intergenic 50.0%
! TTGTCTCGTGGAGAGTGCAT+TGG + chr1_2:55973338-55973357 None:intergenic 50.0%
AGTGGAGCTTGGGATGACAA+TGG - chr1_2:55973369-55973388 Msa0078450:three_prime_UTR 50.0%
ACAAAATGCAGGGCAACCTC+GGG + chr1_2:55973681-55973700 None:intergenic 50.0%
CACAAAATGCAGGGCAACCT+CGG + chr1_2:55973682-55973701 None:intergenic 50.0%
CGAAAGCTTCTCCAAGTTGC+CGG + chr1_2:55973907-55973926 None:intergenic 50.0%
GACGCAGCAACATAAGCAAG+AGG + chr1_2:55974044-55974063 None:intergenic 50.0%
TATGTTGCTGCGTCAGTGCA+TGG - chr1_2:55974050-55974069 Msa0078450:three_prime_UTR 50.0%
ATGTTGCTGCGTCAGTGCAT+GGG - chr1_2:55974051-55974070 Msa0078450:three_prime_UTR 50.0%
AAACGGCTTGCAGCTGAACT+AGG - chr1_2:55974089-55974108 Msa0078450:three_prime_UTR 50.0%
ATGTCCCATCTTTGCCTGAG+GGG - chr1_2:55974117-55974136 Msa0078450:three_prime_UTR 50.0%
CTTTCCCCTCAGGCAAAGAT+GGG + chr1_2:55974124-55974143 None:intergenic 50.0%
ACTTTCCCCTCAGGCAAAGA+TGG + chr1_2:55974125-55974144 None:intergenic 50.0%
!! GAAGGAGGCATCAAGAGAGA+CGG + chr1_2:55974149-55974168 None:intergenic 50.0%
CCGTCATGTGTGGAAGTGAT+TGG - chr1_2:55974171-55974190 Msa0078450:three_prime_UTR 50.0%
! GAAGTGATTGGCCCCTTCTT+AGG - chr1_2:55974183-55974202 Msa0078450:three_prime_UTR 50.0%
CCCCTTCTTAGGGTTATGCA+AGG - chr1_2:55974194-55974213 Msa0078450:three_prime_UTR 50.0%
! TGCAAGGCATGTTTGATGGC+GGG - chr1_2:55974210-55974229 Msa0078450:three_prime_UTR 50.0%
!! GATGGCGGGTTTGACAATAC+AGG - chr1_2:55974224-55974243 Msa0078450:three_prime_UTR 50.0%
GCGGGTTTGACAATACAGGT+CGG - chr1_2:55974228-55974247 Msa0078450:three_prime_UTR 50.0%
CGGGTTTGACAATACAGGTC+GGG - chr1_2:55974229-55974248 Msa0078450:three_prime_UTR 50.0%
GGGTTTGACAATACAGGTCG+GGG - chr1_2:55974230-55974249 Msa0078450:intron 50.0%
TGCTGATGAAGAAGAGGACG+AGG - chr1_2:55974256-55974275 Msa0078450:intron 50.0%
TGAAGAAGGTGGATGGGAGA+TGG - chr1_2:55974382-55974401 Msa0078450:intron 50.0%
!!! AGCTTTTGGGGTGTCAGCTT+CGG + chr1_2:55974426-55974445 None:intergenic 50.0%
GACACCCCAAAAGCTTCTGT+TGG - chr1_2:55974431-55974450 Msa0078450:intron 50.0%
TACTGGCATGCCAGTAGTTG+GGG + chr1_2:55974480-55974499 None:intergenic 50.0%
CTTACTGGCATGCCAGTAGT+TGG + chr1_2:55974482-55974501 None:intergenic 50.0%
GACGCAGAAATCGTCACTTG+CGG - chr1_2:55974511-55974530 Msa0078450:intron 50.0%
AGGTTGCTGAACCGACAACT+CGG - chr1_2:55974572-55974591 Msa0078450:intron 50.0%
!! ACTTGAAAGGAAGTGCTGGG+GGG + chr1_2:55974745-55974764 None:intergenic 50.0%
AAGAGCCTCGGTGAATTTCC+CGG + chr1_2:55974816-55974835 None:intergenic 50.0%
! TGATTGTGGTGGAGTCAAGG+AGG - chr1_2:55974870-55974889 Msa0078450:three_prime_UTR 50.0%
! GATTGTGGTGGAGTCAAGGA+GGG - chr1_2:55974871-55974890 Msa0078450:three_prime_UTR 50.0%
GAGGGAAGTGGATGATGTGA+AGG - chr1_2:55974889-55974908 Msa0078450:three_prime_UTR 50.0%
GTTTGCAGATCGAGCTGAAG+AGG - chr1_2:55974945-55974964 Msa0078450:three_prime_UTR 50.0%
GGACAATCCAGTAAGACAGC+AGG - chr1_2:55974979-55974998 Msa0078450:three_prime_UTR 50.0%
GCCAATCTATCGAGGACAGA+AGG - chr1_2:55975270-55975289 Msa0078450:CDS 50.0%
! TTCACGTTTTGTGCCAACCC+AGG - chr1_2:55975315-55975334 Msa0078450:CDS 50.0%
! ACAGAGCAGTCCAGAAGCAT+CGG + chr1_2:55975383-55975402 None:intergenic 50.0%
CGTATATGCTCCCGAAGAGG+AGG - chr1_2:55970921-55970940 Msa0078450:three_prime_UTR 55.0%
CGAAGAGGAGGGTTCTCAGA+AGG - chr1_2:55970933-55970952 Msa0078450:three_prime_UTR 55.0%
GGATCCATGGACGTTTAGGG+TGG + chr1_2:55971128-55971147 None:intergenic 55.0%
GCGAGGATCCATGGACGTTT+AGG + chr1_2:55971132-55971151 None:intergenic 55.0%
TGGAGACTAGCGAGGATCCA+TGG + chr1_2:55971141-55971160 None:intergenic 55.0%
! ATCCTCGCTAGTCTCCACAG+TGG - chr1_2:55971144-55971163 Msa0078450:three_prime_UTR 55.0%
CAACCTCTCTTCGTCTCTGG+AGG - chr1_2:55971261-55971280 Msa0078450:three_prime_UTR 55.0%
TCCGCAGCCGAGACAATAAG+CGG + chr1_2:55971816-55971835 None:intergenic 55.0%
TTGTCTCGGCTGCGGATGAT+AGG - chr1_2:55971820-55971839 Msa0078450:three_prime_UTR 55.0%
TGGGATGCAACAAAGCGGAC+TGG - chr1_2:55972595-55972614 Msa0078450:three_prime_UTR 55.0%
! CATTCCGCCGAGAGCATGAT+AGG - chr1_2:55972626-55972645 Msa0078450:three_prime_UTR 55.0%
GAGAGAAAGACCCGCCTTTG+TGG - chr1_2:55972729-55972748 Msa0078450:three_prime_UTR 55.0%
AGACCCGCCTTTGTGGTTAG+TGG - chr1_2:55972736-55972755 Msa0078450:three_prime_UTR 55.0%
GACCCGCCTTTGTGGTTAGT+GGG - chr1_2:55972737-55972756 Msa0078450:three_prime_UTR 55.0%
ACCCGCCTTTGTGGTTAGTG+GGG - chr1_2:55972738-55972757 Msa0078450:three_prime_UTR 55.0%
TCCCCACTAACCACAAAGGC+GGG + chr1_2:55972742-55972761 None:intergenic 55.0%
CAAAATGCAGGGCAACCTCG+GGG + chr1_2:55973680-55973699 None:intergenic 55.0%
CTGGTATCGCTTAGGAGTCG+AGG - chr1_2:55973794-55973813 Msa0078450:three_prime_UTR 55.0%
GCTCTTCGCCAAGGTAATGC+TGG - chr1_2:55973816-55973835 Msa0078450:three_prime_UTR 55.0%
AGAGACGGTACTTTCCCCTC+AGG + chr1_2:55974134-55974153 None:intergenic 55.0%
!! CTTCCACACATGACGGGTGA+AGG + chr1_2:55974167-55974186 None:intergenic 55.0%
AGAAGGTGGATGGGAGATGG+AGG - chr1_2:55974385-55974404 Msa0078450:intron 55.0%
!!! CTTTTGGGGTGTCAGCTTCG+GGG + chr1_2:55974424-55974443 None:intergenic 55.0%
!!! GCTTTTGGGGTGTCAGCTTC+GGG + chr1_2:55974425-55974444 None:intergenic 55.0%
ACTGGCATGCCAGTAGTTGG+GGG + chr1_2:55974479-55974498 None:intergenic 55.0%
GGTTGCTGAACCGACAACTC+GGG - chr1_2:55974573-55974592 Msa0078450:intron 55.0%
TACTGCCGGGAAATTCACCG+AGG - chr1_2:55974808-55974827 Msa0078450:intron 55.0%
GCAAGCTCCTGCTGTCTTAC+TGG + chr1_2:55974989-55975008 None:intergenic 55.0%
ACCTTCAGGCACCTCACTTG+AGG - chr1_2:55975029-55975048 Msa0078450:three_prime_UTR 55.0%
! ACCTCAAGTGAGGTGCCTGA+AGG + chr1_2:55975033-55975052 None:intergenic 55.0%
CCTCCTAGCGAAGTTAGCAG+CGG + chr1_2:55975107-55975126 None:intergenic 55.0%
! CTTGCCTTGCTGTCTTCGCT+TGG + chr1_2:55975159-55975178 None:intergenic 55.0%
GAAGACAGCAAGGCAAGTGC+TGG - chr1_2:55975162-55975181 Msa0078450:exon 55.0%
! ACGTTTTGTGCCAACCCAGG+AGG - chr1_2:55975318-55975337 Msa0078450:CDS 55.0%
! CGTTTTGTGCCAACCCAGGA+GGG - chr1_2:55975319-55975338 Msa0078450:CDS 55.0%
! GTTTTGTGCCAACCCAGGAG+GGG - chr1_2:55975320-55975339 Msa0078450:CDS 55.0%
AGTACAAAGCTGCCCCTCCT+GGG + chr1_2:55975335-55975354 None:intergenic 55.0%
!! GTTGTAGGTGCCGATGCTTC+TGG - chr1_2:55975370-55975389 Msa0078450:intron 55.0%
ACTGCTCTGTTCACCTTCCC+AGG - chr1_2:55975393-55975412 Msa0078450:intron 55.0%
CTCAATCAGCGTACCTGGGA+AGG + chr1_2:55975409-55975428 None:intergenic 55.0%
AATCGGGGGCTTCAGTGACT+TGG - chr1_2:55975754-55975773 Msa0078450:five_prime_UTR 55.0%
GCCGCTTATTGTCTCGGCTG+CGG - chr1_2:55971812-55971831 Msa0078450:three_prime_UTR 60.0%
! TTAGCGGCTGGTCACGACAG+TGG - chr1_2:55972685-55972704 Msa0078450:three_prime_UTR 60.0%
TCAACAGAAGGGCTTCCCCG+AGG - chr1_2:55973662-55973681 Msa0078450:three_prime_UTR 60.0%
TGCTGCGTCAGTGCATGGGT+TGG - chr1_2:55974055-55974074 Msa0078450:three_prime_UTR 60.0%
!! CCACACATGACGGGTGAAGG+AGG + chr1_2:55974164-55974183 None:intergenic 60.0%
CCTCCTTCACCCGTCATGTG+TGG - chr1_2:55974161-55974180 Msa0078450:three_prime_UTR 60.0%
GAAGAGGACGAGGCTCCTGA+TGG - chr1_2:55974266-55974285 Msa0078450:intron 60.0%
CTGGCATGCCAGTAGTTGGG+GGG + chr1_2:55974478-55974497 None:intergenic 60.0%
ACTTGCGGCAGAGCATGCAG+CGG - chr1_2:55974526-55974545 Msa0078450:intron 60.0%
GGTGGAGTCAAGGAGGGAAG+TGG - chr1_2:55974877-55974896 Msa0078450:three_prime_UTR 60.0%
CGAAGTTAGCAGCGGTGGCA+AGG + chr1_2:55975099-55975118 None:intergenic 60.0%
CCTAGCGAAGTTAGCAGCGG+TGG + chr1_2:55975104-55975123 None:intergenic 60.0%
CCACCGCTGCTAACTTCGCT+AGG - chr1_2:55975101-55975120 Msa0078450:three_prime_UTR 60.0%
CCGCTGCTAACTTCGCTAGG+AGG - chr1_2:55975104-55975123 Msa0078450:three_prime_UTR 60.0%
CAGTACAAAGCTGCCCCTCC+TGG + chr1_2:55975336-55975355 None:intergenic 60.0%
CGCCACTGTGGAGACTAGCG+AGG + chr1_2:55971149-55971168 None:intergenic 65.0%
GAACACGACGGTCCCGTTCG+CGG - chr1_2:55971219-55971238 Msa0078450:three_prime_UTR 65.0%
AACACGACGGTCCCGTTCGC+GGG - chr1_2:55971220-55971239 Msa0078450:three_prime_UTR 65.0%
GGAGTCGAGGCTCTTCGCCA+AGG - chr1_2:55973807-55973826 Msa0078450:three_prime_UTR 65.0%
! ACGAGGCTCCTGATGGCGAC+TGG - chr1_2:55974273-55974292 Msa0078450:intron 65.0%
! CGAGGCTCCTGATGGCGACT+GGG - chr1_2:55974274-55974293 Msa0078450:intron 65.0%
! GAGGCTCCTGATGGCGACTG+GGG - chr1_2:55974275-55974294 Msa0078450:intron 65.0%
! TCCTGATGGCGACTGGGGTG+AGG - chr1_2:55974280-55974299 Msa0078450:intron 65.0%
TCCTCACCCCAGTCGCCATC+AGG + chr1_2:55974284-55974303 None:intergenic 65.0%
!! AAGGCAAGTGCTGGCAGCCG+CGG - chr1_2:55975171-55975190 Msa0078450:CDS 65.0%
CAAAGCTGCCCCTCCTGGGT+TGG + chr1_2:55975331-55975350 None:intergenic 65.0%
ACACGACGGTCCCGTTCGCG+GGG - chr1_2:55971221-55971240 Msa0078450:three_prime_UTR 70.0%
GCGGCAGAGCATGCAGCGGC+TGG - chr1_2:55974530-55974549 Msa0078450:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 55970897 55975827 55970897 ID=Msa0078450;Name=Msa0078450
chr1_2 mRNA 55970897 55975827 55970897 ID=Msa0078450-mRNA-1;Parent=Msa0078450;Name=Msa0078450-mRNA-1;_AED=0.01;_eAED=0.01;_QI=178|1|1|1|1|0.66|3|3661|130
chr1_2 exon 55970897 55974248 55970897 ID=Msa0078450-mRNA-1:exon:17454;Parent=Msa0078450-mRNA-1
chr1_2 exon 55974857 55975350 55974857 ID=Msa0078450-mRNA-1:exon:17453;Parent=Msa0078450-mRNA-1
chr1_2 exon 55975442 55975827 55975442 ID=Msa0078450-mRNA-1:exon:17452;Parent=Msa0078450-mRNA-1
chr1_2 five_prime_UTR 55975650 55975827 55975650 ID=Msa0078450-mRNA-1:five_prime_utr;Parent=Msa0078450-mRNA-1
chr1_2 CDS 55975442 55975649 55975442 ID=Msa0078450-mRNA-1:cds;Parent=Msa0078450-mRNA-1
chr1_2 CDS 55975166 55975350 55975166 ID=Msa0078450-mRNA-1:cds;Parent=Msa0078450-mRNA-1
chr1_2 three_prime_UTR 55974857 55975165 55974857 ID=Msa0078450-mRNA-1:three_prime_utr;Parent=Msa0078450-mRNA-1
chr1_2 three_prime_UTR 55970897 55974248 55970897 ID=Msa0078450-mRNA-1:three_prime_utr;Parent=Msa0078450-mRNA-1
Gene Sequence

>Msa0078450

ATGTTGACGAAATTCGAAACCAAGAGTAACAGAGTGAAGGGTCTCAGTTTCCACCCTAAACGTCCATGGATCCTCGCTAGTCTCCACAGTGGCGTCATTCAGCTTTGGGATTACCGTATGGGAACCCTAATTGACAAATTCGACGAACACGACGGTCCCGTTCGCGGGGTTCATTTTCACAATTCTCAACCTCTCTTCGTCTCTGGAGGTGATGATTACAAGATTAAGGTTTGGAACTATAAGCTGCATAGGTGTTTGTTTACTTTGTTAGGTCATTTAGATTATATCCGAACCGTTCAATTTCATCATGAGAGTCCGTGGATTGTGAGTGCGAGTGATGATCAAACATTCGAATCTGGAACTGGCAGTCACGTACTTGCATTTCTGTTTTGA
Protein sequence

>Msa0078450

MLTKFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDKFDEHDGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHESPWIVSASDDQTFESGTGSHVLAFLF*