AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0078740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078740 MtrunA17_Chr1g0189461 94.025 318 10 1 1 309 1 318 0.0 607
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 112 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCGCCTTGCAGAGATATT+TGG 0.105761 1_2:+56443335 Msa0078740:CDS
TGAACAAAGTGAAAGGATTT+AGG 0.142031 1_2:-56441154 None:intergenic
GAACAAAGTGAAAGGATTTA+GGG 0.253039 1_2:-56441153 None:intergenic
TTGCATCACACCAAATATTA+AGG 0.261528 1_2:+56443723 Msa0078740:CDS
AGAAGATCGCCATTTGATTC+TGG 0.262418 1_2:+56443501 Msa0078740:CDS
TTTATTCTGTGAGTGAATAT+TGG 0.266830 1_2:+56445468 Msa0078740:three_prime_UTR
AGTGAATATTGGATTTCATT+AGG 0.275421 1_2:+56445479 Msa0078740:three_prime_UTR
ATGCAGCCCCACTGAATAAA+AGG 0.278997 1_2:+56444762 Msa0078740:CDS
TGCTGTTTGAGTTCTTTCTT+AGG 0.292612 1_2:-56444715 None:intergenic
GTGAATATTGGATTTCATTA+GGG 0.294985 1_2:+56445480 Msa0078740:three_prime_UTR
TGCGAGTGTTTGCAAACTTT+GGG 0.308278 1_2:-56445382 None:intergenic
GAAAACATACCATAGCAAAT+TGG 0.312046 1_2:-56441201 None:intergenic
GTAAGATATTTAAAGCAAAA+TGG 0.322362 1_2:+56444994 Msa0078740:three_prime_UTR
TTCCTCCAGTGTTTGTTGAA+TGG 0.343099 1_2:-56444423 None:intergenic
GAGAATGTTTGCTCATGCTT+TGG 0.347131 1_2:+56444895 Msa0078740:CDS
GGATCTTGGTAGGTGCTTCC+CGG 0.350392 1_2:+56445035 Msa0078740:three_prime_UTR
ATCGCCTTGCAGAGATATTT+GGG 0.354727 1_2:+56443336 Msa0078740:CDS
AGAATGTTTGCTCATGCTTT+GGG 0.358558 1_2:+56444896 Msa0078740:CDS
TTCAGATGGGATCTTGGAAT+TGG 0.359182 1_2:+56443280 Msa0078740:CDS
TCCTTGATTGTGATTGAAAC+CGG 0.360335 1_2:-56445054 None:intergenic
TAGTTCTTCCCTGGTTGTGC+TGG 0.363899 1_2:+56445146 Msa0078740:three_prime_UTR
AAAACATACCATAGCAAATT+GGG 0.409413 1_2:-56441200 None:intergenic
GTGCGAGTGTTTGCAAACTT+TGG 0.418688 1_2:-56445383 None:intergenic
CTATAGTTCAGATGGGATCT+TGG 0.423071 1_2:+56443274 Msa0078740:intron
GCTGTTTGAGTTCTTTCTTA+GGG 0.425140 1_2:-56444714 None:intergenic
GAGCAAAGAGTGCATGAAAA+AGG 0.441234 1_2:+56444853 Msa0078740:CDS
TTCTTCTTCTTAATTATCGG+TGG 0.442647 1_2:+56445324 Msa0078740:three_prime_UTR
CCCGGTTTCAATCACAATCA+AGG 0.448293 1_2:+56445053 Msa0078740:three_prime_UTR
TCTGTTCCTAGAAGTAGAAA+TGG 0.448319 1_2:+56444941 Msa0078740:CDS
CTATTGCTCCCAATGGATCT+TGG 0.449545 1_2:+56445021 Msa0078740:three_prime_UTR
CAAATTGCTTAGTTCTTCCC+TGG 0.449987 1_2:+56445137 Msa0078740:three_prime_UTR
GGCTTCATTCAAACACCAAC+AGG 0.452578 1_2:-56445232 None:intergenic
TACATAACACAATCCTTGAT+AGG 0.453396 1_2:-56445537 None:intergenic
CTGAACACAACTTGTTCCCT+CGG 0.458427 1_2:-56445253 None:intergenic
CCACTTGTGTACCAACCACT+TGG 0.469327 1_2:+56445407 Msa0078740:three_prime_UTR
CTAGTGCATGCGCAATCATT+CGG 0.478542 1_2:-56444553 None:intergenic
AGTGATGGTACGAATAATAG+AGG 0.478924 1_2:+56444614 Msa0078740:CDS
TCTTCTTCTTAATTATCGGT+GGG 0.479533 1_2:+56445325 Msa0078740:three_prime_UTR
AGACGGTTGTAAGAGTTCAT+TGG 0.480958 1_2:-56443305 None:intergenic
AGGAGAAAAGAAGCCTCTCC+AGG 0.483856 1_2:+56443743 Msa0078740:CDS
GCTACCACAGGCACGCTTCG+TGG 0.486798 1_2:-56444527 None:intergenic
CGAATGATTGCGCATGCACT+AGG 0.492075 1_2:+56444554 Msa0078740:CDS
TTCTTGAGGCCGAGGATACA+AGG 0.498719 1_2:+56441833 Msa0078740:CDS
AGGATATCACTGACAAGGAT+TGG 0.506350 1_2:-56443671 None:intergenic
ATACTAAGAATTAAAACAAA+AGG 0.510523 1_2:+56444969 Msa0078740:exon
TAACAAGCAGCCAAGTCAAA+AGG 0.510546 1_2:+56445176 Msa0078740:three_prime_UTR
GACATCTCTCCAGAATCAAA+TGG 0.512389 1_2:-56443510 None:intergenic
CCATCACTAACCAACTCATT+CGG 0.513655 1_2:-56444599 None:intergenic
AAGCACCTACCAAGATCCAT+TGG 0.514474 1_2:-56445030 None:intergenic
AGTTAACTTTCTTGAGGCCG+AGG 0.514999 1_2:+56441825 Msa0078740:CDS
ACACAATCCTTGATAGGATA+GGG 0.518459 1_2:-56445531 None:intergenic
TAGAGGTTACCTTGTATCCT+CGG 0.519106 1_2:-56441842 None:intergenic
ATCATTCGGCGGGCTACCAC+AGG 0.519409 1_2:-56444539 None:intergenic
ATCCTTGTCAGTGATATCCT+AGG 0.519862 1_2:+56443674 Msa0078740:CDS
TCATGCTTTGGGAGTACACT+CGG 0.520160 1_2:+56444907 Msa0078740:CDS
TCGAGTCATGTTTGACCTGT+TGG 0.525265 1_2:+56445217 Msa0078740:three_prime_UTR
ATGACTTCCCTATCCTATCA+AGG 0.528977 1_2:+56445524 Msa0078740:three_prime_UTR
TTATTGAACTATAGTTCAGA+TGG 0.533975 1_2:+56443266 Msa0078740:intron
TCGCCACCATCGTCTCAAGC+TGG 0.539991 1_2:+56444812 Msa0078740:CDS
CAAGCATCTCGTTCTTACAA+TGG 0.546578 1_2:+56441792 Msa0078740:CDS
GAGGTTCATCATACGTCCCT+AGG 0.547702 1_2:-56443691 None:intergenic
TGCTCCCAATGGATCTTGGT+AGG 0.547758 1_2:+56445025 Msa0078740:three_prime_UTR
GAAGAATTGAACAAAGTGAA+AGG 0.548221 1_2:-56441161 None:intergenic
TGGTAATCTATTGCTCCCAA+TGG 0.551091 1_2:+56445014 Msa0078740:three_prime_UTR
TCGTTTCCAGCTTGAGACGA+TGG 0.551237 1_2:-56444818 None:intergenic
CTTCTTCTTAATTATCGGTG+GGG 0.553758 1_2:+56445326 Msa0078740:three_prime_UTR
TGTACCAACCACTTGGGCGG+TGG 0.555227 1_2:+56445414 Msa0078740:three_prime_UTR
AACACAATCCTTGATAGGAT+AGG 0.556847 1_2:-56445532 None:intergenic
AACATCCATTCAACAAACAC+TGG 0.558715 1_2:+56444418 Msa0078740:CDS
AGCACCTACCAAGATCCATT+GGG 0.558952 1_2:-56445029 None:intergenic
ACTCTTAGTTAACTTTCTTG+AGG 0.559317 1_2:+56441819 Msa0078740:CDS
TGCATGCGCAATCATTCGGC+GGG 0.559529 1_2:-56444549 None:intergenic
TGAATATTGGATTTCATTAG+GGG 0.560784 1_2:+56445481 Msa0078740:three_prime_UTR
TAAGTTACTCCAGCACAACC+AGG 0.564130 1_2:-56445155 None:intergenic
ATATCACTGACAAGGATTGG+AGG 0.564340 1_2:-56443668 None:intergenic
CCTTGATTGTGATTGAAACC+GGG 0.567372 1_2:-56445053 None:intergenic
CATGCTTTGGGAGTACACTC+GGG 0.568868 1_2:+56444908 Msa0078740:CDS
CCGAATGAGTTGGTTAGTGA+TGG 0.568900 1_2:+56444599 Msa0078740:CDS
CTTATTTGCTTGCTCGTGAG+CGG 0.570847 1_2:+56444456 Msa0078740:CDS
GGAGTACACTCGGGAAAGGA+TGG 0.570901 1_2:+56444917 Msa0078740:CDS
GAGTATGACCCAATTTGCTA+TGG 0.574694 1_2:+56441192 Msa0078740:CDS
AGGTTTGCTCATGAATCTGT+TGG 0.575942 1_2:+56443472 Msa0078740:intron
CACTTGTGTACCAACCACTT+GGG 0.577801 1_2:+56445408 Msa0078740:three_prime_UTR
TATTGAACTATAGTTCAGAT+GGG 0.578722 1_2:+56443267 Msa0078740:intron
TCCTTGTCAGTGATATCCTA+GGG 0.581860 1_2:+56443675 Msa0078740:CDS
GTGCATGCGCAATCATTCGG+CGG 0.589634 1_2:-56444550 None:intergenic
TCGTCTCAAGCTGGAAACGA+AGG 0.592230 1_2:+56444821 Msa0078740:CDS
TTTGGGAGTACACTCGGGAA+AGG 0.593499 1_2:+56444913 Msa0078740:CDS
GCCCCACTGAATAAAAGGAA+TGG 0.598208 1_2:+56444767 Msa0078740:CDS
AACAGCAGAACAAGAAACAC+TGG 0.601247 1_2:+56444731 Msa0078740:CDS
CAAGGCGATGTAAGAGAAGA+CGG 0.602895 1_2:-56443322 None:intergenic
GTAAGAACGAGATGCTTGCA+AGG 0.604235 1_2:-56441787 None:intergenic
TACAGCAACCACCGCCCAAG+TGG 0.606809 1_2:-56445422 None:intergenic
CGTCTCAAGCTGGAAACGAA+GGG 0.607772 1_2:+56444822 Msa0078740:CDS
GCAACCACCGCCCAAGTGGT+TGG 0.608128 1_2:-56445418 None:intergenic
TTGTGTACCAACCACTTGGG+CGG 0.614077 1_2:+56445411 Msa0078740:three_prime_UTR
TTTCCAGCTTGAGACGATGG+TGG 0.622035 1_2:-56444815 None:intergenic
GCTCATGAATCTGTTGGTGA+AGG 0.622594 1_2:+56443478 Msa0078740:CDS
GCGAGTGTTTGCAAACTTTG+GGG 0.629363 1_2:-56445381 None:intergenic
TGTGATGCAAACAAAGATTG+AGG 0.632933 1_2:-56443710 None:intergenic
ATCCATTCAACAAACACTGG+AGG 0.639755 1_2:+56444421 Msa0078740:CDS
AATACCCAAATATCTCTGCA+AGG 0.644182 1_2:-56443340 None:intergenic
CCAAGTGGTTGGTACACAAG+TGG 0.645027 1_2:-56445407 None:intergenic
AACACTGGAGGAAAGAAAAG+CGG 0.645117 1_2:+56444433 Msa0078740:CDS
AAAACCACGAAGCGTGCCTG+TGG 0.652850 1_2:+56444523 Msa0078740:CDS
AAGTTACTCCAGCACAACCA+GGG 0.657159 1_2:-56445154 None:intergenic
TGGTGTTTGAATGAAGCCGA+GGG 0.665075 1_2:+56445237 Msa0078740:three_prime_UTR
GTGATGGTACGAATAATAGA+GGG 0.672584 1_2:+56444615 Msa0078740:CDS
TCCCTAGGATATCACTGACA+AGG 0.677029 1_2:-56443676 None:intergenic
GTAGTGTGTCATACCTGGAG+AGG 0.681902 1_2:-56443756 None:intergenic
GAATATTGGATTTCATTAGG+GGG 0.690334 1_2:+56445482 Msa0078740:three_prime_UTR
TTGGTGTTTGAATGAAGCCG+AGG 0.708036 1_2:+56445236 Msa0078740:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATCTTTTAGATTTAAA+AGG + chr1_2:56442534-56442553 Msa0078740:intron 10.0%
!!! AATTTTAAAACCTTAAAATA+CGG + chr1_2:56442976-56442995 Msa0078740:intron 10.0%
!! AATGTAATAAAATAAAGAAA+GGG - chr1_2:56443578-56443597 None:intergenic 10.0%
!! AAATGTAATAAAATAAAGAA+AGG - chr1_2:56443579-56443598 None:intergenic 10.0%
!! GACAATAAAAAATAATAATT+TGG - chr1_2:56444127-56444146 None:intergenic 10.0%
!!! ATTATTATTTTTTATTGTCT+AGG + chr1_2:56444128-56444147 Msa0078740:intron 10.0%
!!! TTTTTTTTTTTTTGAAGGAA+GGG - chr1_2:56441130-56441149 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTGAAGGA+AGG - chr1_2:56441131-56441150 None:intergenic 15.0%
!!! GGTTTTTTTTTTTTTTTTGA+AGG - chr1_2:56441135-56441154 None:intergenic 15.0%
!! TACTAATGTATATATATTTC+AGG + chr1_2:56441729-56441748 Msa0078740:intron 15.0%
!!! CTTAAAAATGACATTTTTAT+TGG + chr1_2:56442316-56442335 Msa0078740:intron 15.0%
!!! ATTAAACTACTTTCTTTTAT+GGG - chr1_2:56442654-56442673 None:intergenic 15.0%
!! TATAATATTGCAATCTAATA+TGG + chr1_2:56442692-56442711 Msa0078740:intron 15.0%
!! TATAACACTGAAATTTAATA+TGG + chr1_2:56442831-56442850 Msa0078740:intron 15.0%
!! TCATATCAAATATCAAATAA+AGG - chr1_2:56443444-56443463 None:intergenic 15.0%
!!! ATTTTTCCAATAGTATTTTA+GGG + chr1_2:56443595-56443614 Msa0078740:intron 15.0%
!! ATATATATTTAAACTATTGG+TGG + chr1_2:56444222-56444241 Msa0078740:intron 15.0%
!! ATACTAAGAATTAAAACAAA+AGG + chr1_2:56444969-56444988 Msa0078740:exon 15.0%
!!! TTTTTCTTCTTCTTAATTAT+CGG + chr1_2:56445321-56445340 Msa0078740:three_prime_UTR 15.0%
!! TTACAGTAAATAATGCAATT+GGG - chr1_2:56441312-56441331 None:intergenic 20.0%
!! TTTACAGTAAATAATGCAAT+TGG - chr1_2:56441313-56441332 None:intergenic 20.0%
!!! CTTTATTTCATGTTAATTGA+GGG + chr1_2:56441381-56441400 Msa0078740:intron 20.0%
!! ATCAGTTCAAATAACTTAAA+AGG - chr1_2:56441477-56441496 None:intergenic 20.0%
!! TTAAGTTATTTGAACTGATA+TGG + chr1_2:56441478-56441497 Msa0078740:intron 20.0%
!!! AATGAAAATTCAGAATTTTG+CGG - chr1_2:56441640-56441659 None:intergenic 20.0%
!!! TTTGTTGTTGAAAGAATTAA+AGG + chr1_2:56441961-56441980 Msa0078740:intron 20.0%
!! GACAAAAAAAATTAGGTAAA+CGG - chr1_2:56442177-56442196 None:intergenic 20.0%
!! CAAAGTTGACAAAAAAAATT+AGG - chr1_2:56442184-56442203 None:intergenic 20.0%
!!! TTGAAACTTGAATTATTTTG+AGG + chr1_2:56442243-56442262 Msa0078740:intron 20.0%
!! AGTAATACAGCAAAATTATA+TGG - chr1_2:56442287-56442306 None:intergenic 20.0%
!! TTTATTGGAAATGTATCTTA+CGG + chr1_2:56442331-56442350 Msa0078740:intron 20.0%
!! AAACAGAGTGAAAAAAATAT+CGG - chr1_2:56442491-56442510 None:intergenic 20.0%
!!! CATTAAACTACTTTCTTTTA+TGG - chr1_2:56442655-56442674 None:intergenic 20.0%
!! AATCTTGTAAGTAAACAAAA+TGG + chr1_2:56442894-56442913 Msa0078740:intron 20.0%
!! ATATATTAAATTGCCACAAA+TGG - chr1_2:56443110-56443129 None:intergenic 20.0%
!!! AATAGTTGTTTAATTTTCCT+TGG + chr1_2:56443143-56443162 Msa0078740:intron 20.0%
!! TTGTATTCAAAATTCATAGA+TGG - chr1_2:56443171-56443190 None:intergenic 20.0%
!! ATATTAAGAAACACTTTGTA+TGG - chr1_2:56443240-56443259 None:intergenic 20.0%
!! TATTTGATATTTGATATGAC+TGG + chr1_2:56443445-56443464 Msa0078740:intron 20.0%
!!! CATTTTTCCAATAGTATTTT+AGG + chr1_2:56443594-56443613 Msa0078740:intron 20.0%
!! TACAAACTAATGTTTATATG+CGG + chr1_2:56443637-56443656 Msa0078740:intron 20.0%
!!! TACTATTTTATTTGAAGAGT+TGG + chr1_2:56443899-56443918 Msa0078740:intron 20.0%
!! AAAAAAAATATGCTTCTACA+AGG - chr1_2:56444033-56444052 None:intergenic 20.0%
!! ACTTCATTTAAAAAGAAAAG+CGG - chr1_2:56444334-56444353 None:intergenic 20.0%
!!! GTAAGATATTTAAAGCAAAA+TGG + chr1_2:56444994-56445013 Msa0078740:three_prime_UTR 20.0%
! AAAACATACCATAGCAAATT+GGG - chr1_2:56441203-56441222 None:intergenic 25.0%
! TGATGCTGAAACTTAAATTA+GGG - chr1_2:56441352-56441371 None:intergenic 25.0%
! TTGATGCTGAAACTTAAATT+AGG - chr1_2:56441353-56441372 None:intergenic 25.0%
! CCTCAATTAACATGAAATAA+AGG - chr1_2:56441383-56441402 None:intergenic 25.0%
!! CCTTTATTTCATGTTAATTG+AGG + chr1_2:56441380-56441399 Msa0078740:intron 25.0%
!! GCAAAATTCTGAATTTTCAT+TGG + chr1_2:56441639-56441658 Msa0078740:intron 25.0%
!!! TGTATATATATTTCAGGTTG+AGG + chr1_2:56441735-56441754 Msa0078740:intron 25.0%
!! CTATGTGTTATTGAAGTTAA+AGG + chr1_2:56441926-56441945 Msa0078740:intron 25.0%
! TTTCAAGATACTGATAATCA+TGG - chr1_2:56442001-56442020 None:intergenic 25.0%
! TGCTAAAGATTCATATTGAT+CGG - chr1_2:56442063-56442082 None:intergenic 25.0%
! AATGAATAGAGATTCATCAT+AGG - chr1_2:56442124-56442143 None:intergenic 25.0%
!!! CTTGAATTATTTTGAGGTTT+AGG + chr1_2:56442249-56442268 Msa0078740:intron 25.0%
! AATTGTCTCTAACTTTGTTA+TGG + chr1_2:56442438-56442457 Msa0078740:intron 25.0%
! ATAAATTGTCTCAAGTGTAA+AGG + chr1_2:56443022-56443041 Msa0078740:intron 25.0%
! TTATTGAACTATAGTTCAGA+TGG + chr1_2:56443266-56443285 Msa0078740:intron 25.0%
! TATTGAACTATAGTTCAGAT+GGG + chr1_2:56443267-56443286 Msa0078740:intron 25.0%
!! AGTTTTTACATAGATGTATC+TGG - chr1_2:56443535-56443554 None:intergenic 25.0%
! ACAAACTAATGTTTATATGC+GGG + chr1_2:56443638-56443657 Msa0078740:intron 25.0%
!! CTTCTTTTCTCCTTAATATT+TGG - chr1_2:56443736-56443755 None:intergenic 25.0%
! AACATAACATTTAACACATG+TGG + chr1_2:56443858-56443877 Msa0078740:intron 25.0%
! GCTATACAAGTTAAATTTCT+TGG + chr1_2:56443964-56443983 Msa0078740:intron 25.0%
! ATATGATACAAACATGAGTT+TGG + chr1_2:56444159-56444178 Msa0078740:intron 25.0%
!! GCTTTTCTTTTTAAATGAAG+TGG + chr1_2:56444333-56444352 Msa0078740:intron 25.0%
! TTTATTCTGTGAGTGAATAT+TGG + chr1_2:56445468-56445487 Msa0078740:three_prime_UTR 25.0%
! AGTGAATATTGGATTTCATT+AGG + chr1_2:56445479-56445498 Msa0078740:three_prime_UTR 25.0%
! GTGAATATTGGATTTCATTA+GGG + chr1_2:56445480-56445499 Msa0078740:three_prime_UTR 25.0%
! TGAATATTGGATTTCATTAG+GGG + chr1_2:56445481-56445500 Msa0078740:three_prime_UTR 25.0%
!! TTTTTGAAGGAAGGGATTTA+GGG - chr1_2:56441122-56441141 None:intergenic 30.0%
!!! TTTTTTGAAGGAAGGGATTT+AGG - chr1_2:56441123-56441142 None:intergenic 30.0%
GAACAAAGTGAAAGGATTTA+GGG - chr1_2:56441156-56441175 None:intergenic 30.0%
TGAACAAAGTGAAAGGATTT+AGG - chr1_2:56441157-56441176 None:intergenic 30.0%
GAAGAATTGAACAAAGTGAA+AGG - chr1_2:56441164-56441183 None:intergenic 30.0%
GAAAACATACCATAGCAAAT+TGG - chr1_2:56441204-56441223 None:intergenic 30.0%
GTGAGAACAAATTGATAGAA+AGG - chr1_2:56441238-56441257 None:intergenic 30.0%
! TTTAAGTTTCAGCATCAAGT+TGG + chr1_2:56441355-56441374 Msa0078740:intron 30.0%
TTAATTTATAACACCGACCT+CGG - chr1_2:56441561-56441580 None:intergenic 30.0%
TCAGTGTAAAGATAGTTTAC+TGG + chr1_2:56441665-56441684 Msa0078740:intron 30.0%
CAGTGTAAAGATAGTTTACT+GGG + chr1_2:56441666-56441685 Msa0078740:intron 30.0%
ACTCTTAGTTAACTTTCTTG+AGG + chr1_2:56441819-56441838 Msa0078740:CDS 30.0%
GCTTGAATTAATAATCAAGC+CGG - chr1_2:56441901-56441920 None:intergenic 30.0%
ACTTCAATAACACATAGTGA+TGG - chr1_2:56441923-56441942 None:intergenic 30.0%
! ATGTGAGTCATATCTTGTTT+CGG + chr1_2:56442024-56442043 Msa0078740:intron 30.0%
GCTAAAGATTCATATTGATC+GGG - chr1_2:56442062-56442081 None:intergenic 30.0%
TTAGCATCTATCTATCTGTT+TGG + chr1_2:56442077-56442096 Msa0078740:intron 30.0%
! TCATCATAGGAATTTAAGAC+TGG - chr1_2:56442111-56442130 None:intergenic 30.0%
AATGACAAATGAAAAGTGGT+TGG - chr1_2:56442212-56442231 None:intergenic 30.0%
!! ACCACTTTTCATTTGTCATT+TGG + chr1_2:56442212-56442231 Msa0078740:intron 30.0%
ACCAAATGACAAATGAAAAG+TGG - chr1_2:56442216-56442235 None:intergenic 30.0%
CTTACGGTTCATAATAAGAT+TGG + chr1_2:56442347-56442366 Msa0078740:intron 30.0%
GGATTCACGCTTAAAAAAAA+TGG + chr1_2:56442368-56442387 Msa0078740:intron 30.0%
!! CAACATTAATAGTTTGCTCA+TGG - chr1_2:56442417-56442436 None:intergenic 30.0%
AGAGTGAAAAAAATATCGGA+AGG - chr1_2:56442487-56442506 None:intergenic 30.0%
TTAAAAGGACATTGAAGAGA+TGG + chr1_2:56442549-56442568 Msa0078740:intron 30.0%
AATCTTGCAAGTAAGCAAAA+AGG + chr1_2:56442756-56442775 Msa0078740:intron 30.0%
AAAATTCATAGATGGTACCA+AGG - chr1_2:56443163-56443182 None:intergenic 30.0%
TTGATATTTGATATGACTGG+TGG + chr1_2:56443448-56443467 Msa0078740:intron 30.0%
ATAAAATAAAGAAAGGGACC+AGG - chr1_2:56443572-56443591 None:intergenic 30.0%
AGTAGTCCCTAAAATACTAT+TGG - chr1_2:56443604-56443623 None:intergenic 30.0%
TTGCATCACACCAAATATTA+AGG + chr1_2:56443723-56443742 Msa0078740:CDS 30.0%
CTACTAATTCTTCTCTCTTT+CGG + chr1_2:56443775-56443794 Msa0078740:intron 30.0%
CATGTGGTGAATTAGATTTA+TGG + chr1_2:56443874-56443893 Msa0078740:intron 30.0%
AAGAAAAGCGGTTTATACAA+GGG - chr1_2:56444322-56444341 None:intergenic 30.0%
AAAGAAAAGCGGTTTATACA+AGG - chr1_2:56444323-56444342 None:intergenic 30.0%
!!! GCGGATTTTTTCTATGAATT+TGG + chr1_2:56444475-56444494 Msa0078740:CDS 30.0%
GAATAGTGAAAAATCTGATC+TGG + chr1_2:56444667-56444686 Msa0078740:CDS 30.0%
! TTTTCTCCATTTCTACTTCT+AGG - chr1_2:56444950-56444969 None:intergenic 30.0%
AAAAAAACAGAGAAGGTAAC+TGG - chr1_2:56445306-56445325 None:intergenic 30.0%
GAAGAAGAAAAAAACAGAGA+AGG - chr1_2:56445313-56445332 None:intergenic 30.0%
TTCTTCTTCTTAATTATCGG+TGG + chr1_2:56445324-56445343 Msa0078740:three_prime_UTR 30.0%
TCTTCTTCTTAATTATCGGT+GGG + chr1_2:56445325-56445344 Msa0078740:three_prime_UTR 30.0%
GAATATTGGATTTCATTAGG+GGG + chr1_2:56445482-56445501 Msa0078740:three_prime_UTR 30.0%
TACATAACACAATCCTTGAT+AGG - chr1_2:56445540-56445559 None:intergenic 30.0%
CAGAAACAGAGAAGCAAAAT+TGG - chr1_2:56441266-56441285 None:intergenic 35.0%
!! TGTGGAGCATCTTTTTAGAA+TGG + chr1_2:56441504-56441523 Msa0078740:intron 35.0%
GTTAAACTCTCAGTACCATA+TGG - chr1_2:56441539-56441558 None:intergenic 35.0%
! AGAATTTTGCGGCTACAAAT+TGG - chr1_2:56441629-56441648 None:intergenic 35.0%
GTAAGAACTAGATACTTGCA+AGG - chr1_2:56441712-56441731 None:intergenic 35.0%
!! TATATTTCAGGTTGAGGAGT+TGG + chr1_2:56441741-56441760 Msa0078740:intron 35.0%
AGTGGTGTTTATTGTTTAGC+CGG + chr1_2:56441879-56441898 Msa0078740:intron 35.0%
TAAACGGCTACAAAAAGTTC+AGG - chr1_2:56442161-56442180 None:intergenic 35.0%
ATGGTTATCAATTCGCGAAT+CGG - chr1_2:56442398-56442417 None:intergenic 35.0%
! TACTTTCTTTTATGGGCCAT+AGG - chr1_2:56442647-56442666 None:intergenic 35.0%
! ATGTGAAGAGCCGTATTTTA+AGG - chr1_2:56442989-56443008 None:intergenic 35.0%
AATTGTCTCAAGTGTAAAGG+AGG + chr1_2:56443025-56443044 Msa0078740:intron 35.0%
!! AATTTTGTAGCTGCCATTTG+TGG + chr1_2:56443094-56443113 Msa0078740:intron 35.0%
TTGAATACAAACACCAGACA+CGG + chr1_2:56443181-56443200 Msa0078740:intron 35.0%
AATACCCAAATATCTCTGCA+AGG - chr1_2:56443343-56443362 None:intergenic 35.0%
CTCATCTCAAAGATTCTTTC+TGG + chr1_2:56443391-56443410 Msa0078740:intron 35.0%
!! GTATTTTAGGGACTACTGTA+AGG + chr1_2:56443607-56443626 Msa0078740:intron 35.0%
TGTGATGCAAACAAAGATTG+AGG - chr1_2:56443713-56443732 None:intergenic 35.0%
AATTAGTAGTGTGTCATACC+TGG - chr1_2:56443764-56443783 None:intergenic 35.0%
GTATTGCGTGTAATGCATTA+CGG - chr1_2:56443804-56443823 None:intergenic 35.0%
!!! GCAATACTGATTCTGTCTTT+TGG + chr1_2:56443817-56443836 Msa0078740:intron 35.0%
TGATACAAACATGAGTTTGG+TGG + chr1_2:56444162-56444181 Msa0078740:intron 35.0%
!! TGGATACTTGCACTTTTTAG+TGG + chr1_2:56444353-56444372 Msa0078740:intron 35.0%
!! GGATACTTGCACTTTTTAGT+GGG + chr1_2:56444354-56444373 Msa0078740:intron 35.0%
! GAAAAGTGCAACATCTATCA+AGG - chr1_2:56444380-56444399 None:intergenic 35.0%
AACATCCATTCAACAAACAC+TGG + chr1_2:56444418-56444437 Msa0078740:CDS 35.0%
! CTTCGTGGTTTTTGTTCATT+AGG - chr1_2:56444515-56444534 None:intergenic 35.0%
AGTGATGGTACGAATAATAG+AGG + chr1_2:56444614-56444633 Msa0078740:CDS 35.0%
GTGATGGTACGAATAATAGA+GGG + chr1_2:56444615-56444634 Msa0078740:CDS 35.0%
! GCTGTTTGAGTTCTTTCTTA+GGG - chr1_2:56444717-56444736 None:intergenic 35.0%
! TGCTGTTTGAGTTCTTTCTT+AGG - chr1_2:56444718-56444737 None:intergenic 35.0%
! ACCATTCCTTTTATTCAGTG+GGG - chr1_2:56444771-56444790 None:intergenic 35.0%
! GACCATTCCTTTTATTCAGT+GGG - chr1_2:56444772-56444791 None:intergenic 35.0%
! TGACCATTCCTTTTATTCAG+TGG - chr1_2:56444773-56444792 None:intergenic 35.0%
AGAATGTTTGCTCATGCTTT+GGG + chr1_2:56444896-56444915 Msa0078740:CDS 35.0%
TCTGTTCCTAGAAGTAGAAA+TGG + chr1_2:56444941-56444960 Msa0078740:CDS 35.0%
TCCTTGATTGTGATTGAAAC+CGG - chr1_2:56445057-56445076 None:intergenic 35.0%
!! ATTCACGTTACCTTTTGACT+TGG - chr1_2:56445189-56445208 None:intergenic 35.0%
CTTCTTCTTAATTATCGGTG+GGG + chr1_2:56445326-56445345 Msa0078740:three_prime_UTR 35.0%
ACACAATCCTTGATAGGATA+GGG - chr1_2:56445534-56445553 None:intergenic 35.0%
AACACAATCCTTGATAGGAT+AGG - chr1_2:56445535-56445554 None:intergenic 35.0%
!! GAGTATGACCCAATTTGCTA+TGG + chr1_2:56441192-56441211 Msa0078740:CDS 40.0%
! TTTGAACTGATATGGCTCTG+TGG + chr1_2:56441486-56441505 Msa0078740:intron 40.0%
GCAATATCACGAGTTCTCAT+TGG - chr1_2:56441597-56441616 None:intergenic 40.0%
CAAGCATCTCGTTCTTACAA+TGG + chr1_2:56441792-56441811 Msa0078740:CDS 40.0%
TAGAGGTTACCTTGTATCCT+CGG - chr1_2:56441845-56441864 None:intergenic 40.0%
ACAAGGTAACCTCTATGAGA+TGG + chr1_2:56441850-56441869 Msa0078740:intron 40.0%
CAAGGTAACCTCTATGAGAT+GGG + chr1_2:56441851-56441870 Msa0078740:intron 40.0%
ACTCAAAACCCATCTCATAG+AGG - chr1_2:56441862-56441881 None:intergenic 40.0%
!!! TCTATGAGATGGGTTTTGAG+TGG + chr1_2:56441861-56441880 Msa0078740:intron 40.0%
GGACAAATTTGAGCTCTCAA+TGG + chr1_2:56442459-56442478 Msa0078740:intron 40.0%
!! AGAGTGGCTCTAAGTTTGTT+TGG + chr1_2:56443056-56443075 Msa0078740:intron 40.0%
CTATAGTTCAGATGGGATCT+TGG + chr1_2:56443274-56443293 Msa0078740:intron 40.0%
TTCAGATGGGATCTTGGAAT+TGG + chr1_2:56443280-56443299 Msa0078740:CDS 40.0%
AGACGGTTGTAAGAGTTCAT+TGG - chr1_2:56443308-56443327 None:intergenic 40.0%
ATCGCCTTGCAGAGATATTT+GGG + chr1_2:56443336-56443355 Msa0078740:CDS 40.0%
TATTTGATATGACTGGTGGC+AGG + chr1_2:56443452-56443471 Msa0078740:intron 40.0%
! AGGTTTGCTCATGAATCTGT+TGG + chr1_2:56443472-56443491 Msa0078740:intron 40.0%
AGAAGATCGCCATTTGATTC+TGG + chr1_2:56443501-56443520 Msa0078740:CDS 40.0%
GACATCTCTCCAGAATCAAA+TGG - chr1_2:56443513-56443532 None:intergenic 40.0%
!! AACTACCCTTTTAACTCTCC+TGG + chr1_2:56443551-56443570 Msa0078740:intron 40.0%
ATATCACTGACAAGGATTGG+AGG - chr1_2:56443671-56443690 None:intergenic 40.0%
AGGATATCACTGACAAGGAT+TGG - chr1_2:56443674-56443693 None:intergenic 40.0%
ATCCTTGTCAGTGATATCCT+AGG + chr1_2:56443674-56443693 Msa0078740:CDS 40.0%
TCCTTGTCAGTGATATCCTA+GGG + chr1_2:56443675-56443694 Msa0078740:CDS 40.0%
AAGAGTTGGAACAGTACTGT+TGG + chr1_2:56443913-56443932 Msa0078740:intron 40.0%
ATCCATTCAACAAACACTGG+AGG + chr1_2:56444421-56444440 Msa0078740:CDS 40.0%
! TTCCTCCAGTGTTTGTTGAA+TGG - chr1_2:56444426-56444445 None:intergenic 40.0%
AACACTGGAGGAAAGAAAAG+CGG + chr1_2:56444433-56444452 Msa0078740:CDS 40.0%
CGCAAAAAATCCGAATGAGT+TGG + chr1_2:56444589-56444608 Msa0078740:CDS 40.0%
CCATCACTAACCAACTCATT+CGG - chr1_2:56444602-56444621 None:intergenic 40.0%
AACAGCAGAACAAGAAACAC+TGG + chr1_2:56444731-56444750 Msa0078740:CDS 40.0%
! GAGCAAAGAGTGCATGAAAA+AGG + chr1_2:56444853-56444872 Msa0078740:CDS 40.0%
!! TGCATGAAAAAGGAGCACTT+AGG + chr1_2:56444863-56444882 Msa0078740:CDS 40.0%
GAGAATGTTTGCTCATGCTT+TGG + chr1_2:56444895-56444914 Msa0078740:CDS 40.0%
TGGTAATCTATTGCTCCCAA+TGG + chr1_2:56445014-56445033 Msa0078740:three_prime_UTR 40.0%
CCTTGATTGTGATTGAAACC+GGG - chr1_2:56445056-56445075 None:intergenic 40.0%
! CAAATTGCTTAGTTCTTCCC+TGG + chr1_2:56445137-56445156 Msa0078740:three_prime_UTR 40.0%
TAACAAGCAGCCAAGTCAAA+AGG + chr1_2:56445176-56445195 Msa0078740:three_prime_UTR 40.0%
! TGGGGTACTAAGTTCGATTT+GGG - chr1_2:56445366-56445385 None:intergenic 40.0%
! TTGGGGTACTAAGTTCGATT+TGG - chr1_2:56445367-56445386 None:intergenic 40.0%
TGCGAGTGTTTGCAAACTTT+GGG - chr1_2:56445385-56445404 None:intergenic 40.0%
ATTGGATTTCATTAGGGGGA+AGG + chr1_2:56445486-56445505 Msa0078740:three_prime_UTR 40.0%
ATGACTTCCCTATCCTATCA+AGG + chr1_2:56445524-56445543 Msa0078740:three_prime_UTR 40.0%
! GAATGGCTTGTCATGCCATA+TGG + chr1_2:56441521-56441540 Msa0078740:intron 45.0%
! TGGTACTGAGAGTTTAACCG+AGG + chr1_2:56441541-56441560 Msa0078740:intron 45.0%
ACTGAGAGTTTAACCGAGGT+CGG + chr1_2:56441545-56441564 Msa0078740:intron 45.0%
CACGAGTTCTCATTGGATGT+CGG - chr1_2:56441590-56441609 None:intergenic 45.0%
TGCGGCTACAAATTGGACTT+GGG - chr1_2:56441622-56441641 None:intergenic 45.0%
TTGCGGCTACAAATTGGACT+TGG - chr1_2:56441623-56441642 None:intergenic 45.0%
!!! GGAGTTGGCTTTTCTTGTGA+AGG + chr1_2:56441756-56441775 Msa0078740:intron 45.0%
GTAAGAACGAGATGCTTGCA+AGG - chr1_2:56441790-56441809 None:intergenic 45.0%
AGTTAACTTTCTTGAGGCCG+AGG + chr1_2:56441825-56441844 Msa0078740:CDS 45.0%
GGCTACAAAAAGTTCAGGTG+GGG - chr1_2:56442156-56442175 None:intergenic 45.0%
CGGCTACAAAAAGTTCAGGT+GGG - chr1_2:56442157-56442176 None:intergenic 45.0%
ACGGCTACAAAAAGTTCAGG+TGG - chr1_2:56442158-56442177 None:intergenic 45.0%
!! AAAGGAGGAGCTTTTGAGAG+TGG + chr1_2:56443040-56443059 Msa0078740:intron 45.0%
TAGGAGTCTCAATGCTTCGT+CGG + chr1_2:56443211-56443230 Msa0078740:intron 45.0%
CAAGGCGATGTAAGAGAAGA+CGG - chr1_2:56443325-56443344 None:intergenic 45.0%
CATCGCCTTGCAGAGATATT+TGG + chr1_2:56443335-56443354 Msa0078740:CDS 45.0%
! GCTCATGAATCTGTTGGTGA+AGG + chr1_2:56443478-56443497 Msa0078740:CDS 45.0%
AGGGACCAGGAGAGTTAAAA+GGG - chr1_2:56443559-56443578 None:intergenic 45.0%
AAGGGACCAGGAGAGTTAAA+AGG - chr1_2:56443560-56443579 None:intergenic 45.0%
TCCCTAGGATATCACTGACA+AGG - chr1_2:56443679-56443698 None:intergenic 45.0%
CTTATTTGCTTGCTCGTGAG+CGG + chr1_2:56444456-56444475 Msa0078740:CDS 45.0%
CTAGTGCATGCGCAATCATT+CGG - chr1_2:56444556-56444575 None:intergenic 45.0%
!! CCGAATGAGTTGGTTAGTGA+TGG + chr1_2:56444599-56444618 Msa0078740:CDS 45.0%
ATGCAGCCCCACTGAATAAA+AGG + chr1_2:56444762-56444781 Msa0078740:CDS 45.0%
GCCCCACTGAATAAAAGGAA+TGG + chr1_2:56444767-56444786 Msa0078740:CDS 45.0%
!! TCATGCTTTGGGAGTACACT+CGG + chr1_2:56444907-56444926 Msa0078740:CDS 45.0%
CTATTGCTCCCAATGGATCT+TGG + chr1_2:56445021-56445040 Msa0078740:three_prime_UTR 45.0%
AGCACCTACCAAGATCCATT+GGG - chr1_2:56445032-56445051 None:intergenic 45.0%
AAGCACCTACCAAGATCCAT+TGG - chr1_2:56445033-56445052 None:intergenic 45.0%
CCCGGTTTCAATCACAATCA+AGG + chr1_2:56445053-56445072 Msa0078740:three_prime_UTR 45.0%
AAGTTACTCCAGCACAACCA+GGG - chr1_2:56445157-56445176 None:intergenic 45.0%
TAAGTTACTCCAGCACAACC+AGG - chr1_2:56445158-56445177 None:intergenic 45.0%
TCGAGTCATGTTTGACCTGT+TGG + chr1_2:56445217-56445236 Msa0078740:three_prime_UTR 45.0%
GGCTTCATTCAAACACCAAC+AGG - chr1_2:56445235-56445254 None:intergenic 45.0%
! TTGGTGTTTGAATGAAGCCG+AGG + chr1_2:56445236-56445255 Msa0078740:three_prime_UTR 45.0%
TGGTGTTTGAATGAAGCCGA+GGG + chr1_2:56445237-56445256 Msa0078740:three_prime_UTR 45.0%
! CTGAACACAACTTGTTCCCT+CGG - chr1_2:56445256-56445275 None:intergenic 45.0%
! GGGGTACTAAGTTCGATTTG+GGG - chr1_2:56445365-56445384 None:intergenic 45.0%
GCGAGTGTTTGCAAACTTTG+GGG - chr1_2:56445384-56445403 None:intergenic 45.0%
GTGCGAGTGTTTGCAAACTT+TGG - chr1_2:56445386-56445405 None:intergenic 45.0%
CACTTGTGTACCAACCACTT+GGG + chr1_2:56445408-56445427 Msa0078740:three_prime_UTR 45.0%
GATTTCATTAGGGGGAAGGT+AGG + chr1_2:56445490-56445509 Msa0078740:three_prime_UTR 45.0%
!! AATATATATATTTAAACTAT+TGG + chr1_2:56444219-56444238 Msa0078740:intron 5.0%
!!! ATATTTAATTTTTCATTTTA+TGG - chr1_2:56444270-56444289 None:intergenic 5.0%
TTCTTGAGGCCGAGGATACA+AGG + chr1_2:56441833-56441852 Msa0078740:CDS 50.0%
GTGTGCTGTATGCGTACCTA+TGG + chr1_2:56442628-56442647 Msa0078740:intron 50.0%
CACCAGACACGGATAAACCT+AGG + chr1_2:56443192-56443211 Msa0078740:intron 50.0%
CTCCTAGGTTTATCCGTGTC+TGG - chr1_2:56443197-56443216 None:intergenic 50.0%
!! GACGAAGCATTGAGACTCCT+AGG - chr1_2:56443212-56443231 None:intergenic 50.0%
AGGAGTCTCAATGCTTCGTC+GGG + chr1_2:56443212-56443231 Msa0078740:intron 50.0%
GAGGTTCATCATACGTCCCT+AGG - chr1_2:56443694-56443713 None:intergenic 50.0%
AGGAGAAAAGAAGCCTCTCC+AGG + chr1_2:56443743-56443762 Msa0078740:CDS 50.0%
GTAGTGTGTCATACCTGGAG+AGG - chr1_2:56443759-56443778 None:intergenic 50.0%
CGAATGATTGCGCATGCACT+AGG + chr1_2:56444554-56444573 Msa0078740:CDS 50.0%
! GGTGGCGAACTTTTGTCAAC+TGG - chr1_2:56444800-56444819 None:intergenic 50.0%
TTTCCAGCTTGAGACGATGG+TGG - chr1_2:56444818-56444837 None:intergenic 50.0%
TCGTTTCCAGCTTGAGACGA+TGG - chr1_2:56444821-56444840 None:intergenic 50.0%
TCGTCTCAAGCTGGAAACGA+AGG + chr1_2:56444821-56444840 Msa0078740:CDS 50.0%
CGTCTCAAGCTGGAAACGAA+GGG + chr1_2:56444822-56444841 Msa0078740:CDS 50.0%
!! CATGCTTTGGGAGTACACTC+GGG + chr1_2:56444908-56444927 Msa0078740:CDS 50.0%
! TTTGGGAGTACACTCGGGAA+AGG + chr1_2:56444913-56444932 Msa0078740:CDS 50.0%
TGCTCCCAATGGATCTTGGT+AGG + chr1_2:56445025-56445044 Msa0078740:three_prime_UTR 50.0%
TAGTTCTTCCCTGGTTGTGC+TGG + chr1_2:56445146-56445165 Msa0078740:three_prime_UTR 50.0%
! CCAAGTGGTTGGTACACAAG+TGG - chr1_2:56445410-56445429 None:intergenic 50.0%
CCACTTGTGTACCAACCACT+TGG + chr1_2:56445407-56445426 Msa0078740:three_prime_UTR 50.0%
TTGTGTACCAACCACTTGGG+CGG + chr1_2:56445411-56445430 Msa0078740:three_prime_UTR 50.0%
AAAACCACGAAGCGTGCCTG+TGG + chr1_2:56444523-56444542 Msa0078740:CDS 55.0%
TGCATGCGCAATCATTCGGC+GGG - chr1_2:56444552-56444571 None:intergenic 55.0%
GTGCATGCGCAATCATTCGG+CGG - chr1_2:56444553-56444572 None:intergenic 55.0%
GGAGTACACTCGGGAAAGGA+TGG + chr1_2:56444917-56444936 Msa0078740:CDS 55.0%
GGATCTTGGTAGGTGCTTCC+CGG + chr1_2:56445035-56445054 Msa0078740:three_prime_UTR 55.0%
!! ATCATTCGGCGGGCTACCAC+AGG - chr1_2:56444542-56444561 None:intergenic 60.0%
TCGCCACCATCGTCTCAAGC+TGG + chr1_2:56444812-56444831 Msa0078740:CDS 60.0%
TGTACCAACCACTTGGGCGG+TGG + chr1_2:56445414-56445433 Msa0078740:three_prime_UTR 60.0%
TACAGCAACCACCGCCCAAG+TGG - chr1_2:56445425-56445444 None:intergenic 60.0%
GCTACCACAGGCACGCTTCG+TGG - chr1_2:56444530-56444549 None:intergenic 65.0%
GCAACCACCGCCCAAGTGGT+TGG - chr1_2:56445421-56445440 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 56441046 56445596 56441046 ID=Msa0078740;Name=Msa0078740
chr1_2 mRNA 56441046 56445596 56441046 ID=Msa0078740-mRNA-1;Parent=Msa0078740;Name=Msa0078740-mRNA-1;_AED=0.15;_eAED=0.15;_QI=144|0.83|0.85|1|0.83|0.71|7|594|309
chr1_2 exon 56441046 56441213 56441046 ID=Msa0078740-mRNA-1:exon:17695;Parent=Msa0078740-mRNA-1
chr1_2 exon 56441778 56441854 56441778 ID=Msa0078740-mRNA-1:exon:17696;Parent=Msa0078740-mRNA-1
chr1_2 exon 56443280 56443357 56443280 ID=Msa0078740-mRNA-1:exon:17697;Parent=Msa0078740-mRNA-1
chr1_2 exon 56443474 56443545 56443474 ID=Msa0078740-mRNA-1:exon:17698;Parent=Msa0078740-mRNA-1
chr1_2 exon 56443667 56443764 56443667 ID=Msa0078740-mRNA-1:exon:17699;Parent=Msa0078740-mRNA-1
chr1_2 exon 56444402 56445347 56444402 ID=Msa0078740-mRNA-1:exon:17700;Parent=Msa0078740-mRNA-1
chr1_2 exon 56445368 56445596 56445368 ID=Msa0078740-mRNA-1:exon:17701;Parent=Msa0078740-mRNA-1
chr1_2 five_prime_UTR 56441046 56441189 56441046 ID=Msa0078740-mRNA-1:five_prime_utr;Parent=Msa0078740-mRNA-1
chr1_2 CDS 56441190 56441213 56441190 ID=Msa0078740-mRNA-1:cds;Parent=Msa0078740-mRNA-1
chr1_2 CDS 56441778 56441854 56441778 ID=Msa0078740-mRNA-1:cds;Parent=Msa0078740-mRNA-1
chr1_2 CDS 56443280 56443357 56443280 ID=Msa0078740-mRNA-1:cds;Parent=Msa0078740-mRNA-1
chr1_2 CDS 56443474 56443545 56443474 ID=Msa0078740-mRNA-1:cds;Parent=Msa0078740-mRNA-1
chr1_2 CDS 56443667 56443764 56443667 ID=Msa0078740-mRNA-1:cds;Parent=Msa0078740-mRNA-1
chr1_2 CDS 56444402 56444982 56444402 ID=Msa0078740-mRNA-1:cds;Parent=Msa0078740-mRNA-1
chr1_2 three_prime_UTR 56444983 56445347 56444983 ID=Msa0078740-mRNA-1:three_prime_utr;Parent=Msa0078740-mRNA-1
chr1_2 three_prime_UTR 56445368 56445596 56445368 ID=Msa0078740-mRNA-1:three_prime_utr;Parent=Msa0078740-mRNA-1
Gene Sequence

>Msa0078740

ATGAGTATGACCCAATTTGCTATGGACAATCTTCCTTGCAAGCATCTCGTTCTTACAATGGAAGAACTCTTAGTTAACTTTCTTGAGGCCGAGGATACAAGTTCAGATGGGATCTTGGAATTGGAGCCAATGAACTCTTACAACCGTCTTCTCTTACATCGCCTTGCAGAGATATTTGGGTTTGCTCATGAATCTGTTGGTGAAGGAGAAGATCGCCATTTGATTCTGGAGAGATGTCCAGATACATCTATACCTCCAATCCTTGTCAGTGATATCCTAGGGACGTATGATGAACCTCAATCTTTGTTTGCATCACACCAAATATTAAGGAGAAAAGAAGCCTCTCCAGTTTCACAGACAAATACAACATCCATTCAACAAACACTGGAGGAAAGAAAAGCGGCTTATTTGCTTGCTCGTGAGCGGATTTTTTCTATGAATTTGGAAGATGCAAAAGAGCCTAATGAACAAAAACCACGAAGCGTGCCTGTGGTAGCCCGCCGAATGATTGCGCATGCACTAGGTCAAAGAATCAACGCAAAAAATCCGAATGAGTTGGTTAGTGATGGTACGAATAATAGAGGGTTCTTAGATGAATTAAATGCTCAAGATAAGAATAGTGAAAAATCTGATCTGGCAAAAGATTTTGAAGAGTCTCTATCCCTAAGAAAGAACTCAAACAGCAGAACAAGAAACACTGGTAGTTCTAATGCAGCCCCACTGAATAAAAGGAATGGTCAAACACCAGTTGACAAAAGTTCGCCACCATCGTCTCAAGCTGGAAACGAAGGGCAAAGTGTGAGCAAAGAGTGCATGAAAAAGGAGCACTTAGGAGCTGCGAAGAGAATGTTTGCTCATGCTTTGGGAGTACACTCGGGAAAGGATGGTTCTGTTCCTAGAAGTAGAAATGGAGAAAATACTAAGAATTAA
Protein sequence

>Msa0078740

MSMTQFAMDNLPCKHLVLTMEELLVNFLEAEDTSSDGILELEPMNSYNRLLLHRLAEIFGFAHESVGEGEDRHLILERCPDTSIPPILVSDILGTYDEPQSLFASHQILRRKEASPVSQTNTTSIQQTLEERKAAYLLARERIFSMNLEDAKEPNEQKPRSVPVVARRMIAHALGQRINAKNPNELVSDGTNNRGFLDELNAQDKNSEKSDLAKDFEESLSLRKNSNSRTRNTGSSNAAPLNKRNGQTPVDKSSPPSSQAGNEGQSVSKECMKKEHLGAAKRMFAHALGVHSGKDGSVPRSRNGENTKN*