AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0126460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0126460 MtrunA17_Chr1g0189461 94.340 318 9 1 1 309 1 318 0.0 609
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 110 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAACAAAGTGAAAGGATTT+AGG 0.142031 1_3:-55564316 None:intergenic
CATCGCCTTGCAGAGATCTT+TGG 0.216833 1_3:+55566498 Msa0126460:CDS
GAACAAAGTGAAAGGATTTA+GGG 0.253039 1_3:-55564315 None:intergenic
TTGCATCACACCAAATATTA+AGG 0.261528 1_3:+55566886 Msa0126460:CDS
AGAAGATCGCCATTTGATTC+TGG 0.262418 1_3:+55566664 Msa0126460:CDS
TTTATTCTGTGAGTGAATAT+TGG 0.266830 1_3:+55568631 Msa0126460:three_prime_UTR
AGTGAATATTGGATTTCATT+AGG 0.275421 1_3:+55568642 Msa0126460:three_prime_UTR
ATGCAGCCCCACTGAATAAA+AGG 0.278997 1_3:+55567925 Msa0126460:CDS
TGCTGTTTGAGTTCTTTCTT+AGG 0.292612 1_3:-55567878 None:intergenic
GTGAATATTGGATTTCATTA+GGG 0.294985 1_3:+55568643 Msa0126460:three_prime_UTR
TGCGAGTGTTTGCAAACTTT+GGG 0.308278 1_3:-55568545 None:intergenic
GAAAACATACCATAGCAAAT+TGG 0.312046 1_3:-55564363 None:intergenic
GTAAGATATTTAAAGCAAAA+TGG 0.322362 1_3:+55568157 Msa0126460:three_prime_UTR
TTCCTCCAGTGTTTGTTGAA+TGG 0.343099 1_3:-55567586 None:intergenic
GAGAATGTTTGCTCATGCTT+TGG 0.347131 1_3:+55568058 Msa0126460:CDS
ATCGCCTTGCAGAGATCTTT+GGG 0.347333 1_3:+55566499 Msa0126460:CDS
GGATCTTGGTAGGTGCTTCC+CGG 0.350392 1_3:+55568198 Msa0126460:three_prime_UTR
AGAATGTTTGCTCATGCTTT+GGG 0.358558 1_3:+55568059 Msa0126460:CDS
TTCAGATGGGATCTTGGAAT+TGG 0.359182 1_3:+55566443 Msa0126460:CDS
TCCTTGATTGTGATTGAAAC+CGG 0.360335 1_3:-55568217 None:intergenic
TAGTTCTTCCCTGGTTGTGC+TGG 0.363899 1_3:+55568309 Msa0126460:three_prime_UTR
AAAACATACCATAGCAAATT+GGG 0.409413 1_3:-55564362 None:intergenic
GTGCGAGTGTTTGCAAACTT+TGG 0.418688 1_3:-55568546 None:intergenic
CTATAGTTCAGATGGGATCT+TGG 0.423071 1_3:+55566437 Msa0126460:intron
GCTGTTTGAGTTCTTTCTTA+GGG 0.425140 1_3:-55567877 None:intergenic
GAGCAAAGAGTGCATGAAAA+AGG 0.441234 1_3:+55568016 Msa0126460:CDS
AGCTTCATTCAAACACCAAC+AGG 0.448214 1_3:-55568395 None:intergenic
CCCGGTTTCAATCACAATCA+AGG 0.448293 1_3:+55568216 Msa0126460:three_prime_UTR
TCTGTTCCTAGAAGTAGAAA+TGG 0.448319 1_3:+55568104 Msa0126460:CDS
CTATTGCTCCCAATGGATCT+TGG 0.449545 1_3:+55568184 Msa0126460:three_prime_UTR
CAAATTGCTTAGTTCTTCCC+TGG 0.449987 1_3:+55568300 Msa0126460:three_prime_UTR
TACATAACACAATCCTTGAT+AGG 0.453396 1_3:-55568700 None:intergenic
TCGTCTCAAGCTGGAAAAGA+AGG 0.459610 1_3:+55567984 Msa0126460:CDS
CCACTTGTGTACCAACCACT+TGG 0.469327 1_3:+55568570 Msa0126460:three_prime_UTR
CTAGTGCATGCGCAATCATT+CGG 0.478542 1_3:-55567716 None:intergenic
AGTGATGGTACGAATAATAG+AGG 0.478924 1_3:+55567777 Msa0126460:CDS
TTCGTCTTCTTAATTATCGG+TGG 0.480745 1_3:+55568487 Msa0126460:three_prime_UTR
AGACGGTTGTAAGAGTTCAT+TGG 0.480958 1_3:-55566468 None:intergenic
AGGAGAAAAGAAGCCTCTCC+AGG 0.483856 1_3:+55566906 Msa0126460:CDS
GCTACCACAGGCACGCTTCG+TGG 0.486798 1_3:-55567690 None:intergenic
TCGTCTTCTTAATTATCGGT+GGG 0.490782 1_3:+55568488 Msa0126460:three_prime_UTR
CGAATGATTGCGCATGCACT+AGG 0.492075 1_3:+55567717 Msa0126460:CDS
TTCTTGAGGCCGAGGATACA+AGG 0.498719 1_3:+55564995 Msa0126460:CDS
AGGATATCACTGACAAGGAT+TGG 0.506350 1_3:-55566834 None:intergenic
ATACTAAGAATTAAAACAAA+AGG 0.510523 1_3:+55568132 Msa0126460:exon
TAACAAGCAGCCAAGTCAAA+AGG 0.510546 1_3:+55568339 Msa0126460:three_prime_UTR
GACATCTCTCCAGAATCAAA+TGG 0.512389 1_3:-55566673 None:intergenic
CCATCACTAACCAACTCATT+CGG 0.513655 1_3:-55567762 None:intergenic
AAGCACCTACCAAGATCCAT+TGG 0.514474 1_3:-55568193 None:intergenic
AGTTAACTTTCTTGAGGCCG+AGG 0.514999 1_3:+55564987 Msa0126460:CDS
ACACAATCCTTGATAGGATA+GGG 0.518459 1_3:-55568694 None:intergenic
TAGAGGTTACCTTGTATCCT+CGG 0.519106 1_3:-55565004 None:intergenic
ATCATTCGGCGGGCTACCAC+AGG 0.519409 1_3:-55567702 None:intergenic
ATCCTTGTCAGTGATATCCT+AGG 0.519862 1_3:+55566837 Msa0126460:CDS
TCATGCTTTGGGAGTACACT+CGG 0.520160 1_3:+55568070 Msa0126460:CDS
CGTCTTCTTAATTATCGGTG+GGG 0.520480 1_3:+55568489 Msa0126460:three_prime_UTR
TCGAGTCATGTTTGACCTGT+TGG 0.525265 1_3:+55568380 Msa0126460:three_prime_UTR
ATGACTTCCCTATCCTATCA+AGG 0.528977 1_3:+55568687 Msa0126460:three_prime_UTR
TTATTGAACTATAGTTCAGA+TGG 0.533975 1_3:+55566429 Msa0126460:intron
TCGCCACCATCGTCTCAAGC+TGG 0.539991 1_3:+55567975 Msa0126460:CDS
CAAGCATCTCGTTCTTACAA+TGG 0.546578 1_3:+55564954 Msa0126460:CDS
GAGGTTCATCATACGTCCCT+AGG 0.547702 1_3:-55566854 None:intergenic
TGCTCCCAATGGATCTTGGT+AGG 0.547758 1_3:+55568188 Msa0126460:three_prime_UTR
GAAGAATTGAACAAAGTGAA+AGG 0.548221 1_3:-55564323 None:intergenic
TGGTAATCTATTGCTCCCAA+TGG 0.551091 1_3:+55568177 Msa0126460:three_prime_UTR
TGTACCAACCACTTGGGCGG+TGG 0.555227 1_3:+55568577 Msa0126460:three_prime_UTR
AACACAATCCTTGATAGGAT+AGG 0.556847 1_3:-55568695 None:intergenic
AACATCCATTCAACAAACAC+TGG 0.558715 1_3:+55567581 Msa0126460:CDS
AGCACCTACCAAGATCCATT+GGG 0.558952 1_3:-55568192 None:intergenic
ACTCTTAGTTAACTTTCTTG+AGG 0.559317 1_3:+55564981 Msa0126460:CDS
TGCATGCGCAATCATTCGGC+GGG 0.559529 1_3:-55567712 None:intergenic
TGAATATTGGATTTCATTAG+GGG 0.560784 1_3:+55568644 Msa0126460:three_prime_UTR
TAAGTTACTCCAGCACAACC+AGG 0.564130 1_3:-55568318 None:intergenic
ATATCACTGACAAGGATTGG+AGG 0.564340 1_3:-55566831 None:intergenic
CCTTGATTGTGATTGAAACC+GGG 0.567372 1_3:-55568216 None:intergenic
CATGCTTTGGGAGTACACTC+GGG 0.568868 1_3:+55568071 Msa0126460:CDS
CCGAATGAGTTGGTTAGTGA+TGG 0.568900 1_3:+55567762 Msa0126460:CDS
CTTATTTGCTTGCTCGTGAG+CGG 0.570847 1_3:+55567619 Msa0126460:CDS
GGAGTACACTCGGGAAAGGA+TGG 0.570901 1_3:+55568080 Msa0126460:CDS
GAGTATGACCCAATTTGCTA+TGG 0.574694 1_3:+55564354 Msa0126460:CDS
AGGTTTGCTCATGAATCTGT+TGG 0.575942 1_3:+55566635 Msa0126460:intron
CACTTGTGTACCAACCACTT+GGG 0.577801 1_3:+55568571 Msa0126460:three_prime_UTR
TATTGAACTATAGTTCAGAT+GGG 0.578722 1_3:+55566430 Msa0126460:intron
TCCTTGTCAGTGATATCCTA+GGG 0.581860 1_3:+55566838 Msa0126460:CDS
CGTCTCAAGCTGGAAAAGAA+GGG 0.582412 1_3:+55567985 Msa0126460:CDS
GTGCATGCGCAATCATTCGG+CGG 0.589634 1_3:-55567713 None:intergenic
TTTGGGAGTACACTCGGGAA+AGG 0.593499 1_3:+55568076 Msa0126460:CDS
GCCCCACTGAATAAAAGGAA+TGG 0.598208 1_3:+55567930 Msa0126460:CDS
AACAGCAGAACAAGAAACAC+TGG 0.601247 1_3:+55567894 Msa0126460:CDS
CAAGGCGATGTAAGAGAAGA+CGG 0.602895 1_3:-55566485 None:intergenic
GTAAGAACGAGATGCTTGCA+AGG 0.604235 1_3:-55564949 None:intergenic
TACAGCAACCACCGCCCAAG+TGG 0.606809 1_3:-55568585 None:intergenic
GCAACCACCGCCCAAGTGGT+TGG 0.608128 1_3:-55568581 None:intergenic
TTTCCAGCTTGAGACGATGG+TGG 0.609421 1_3:-55567978 None:intergenic
TTGTGTACCAACCACTTGGG+CGG 0.614077 1_3:+55568574 Msa0126460:three_prime_UTR
GCTCATGAATCTGTTGGTGA+AGG 0.622594 1_3:+55566641 Msa0126460:CDS
GCGAGTGTTTGCAAACTTTG+GGG 0.629363 1_3:-55568544 None:intergenic
TGTGATGCAAACAAAGATTG+AGG 0.632933 1_3:-55566873 None:intergenic
ATCCATTCAACAAACACTGG+AGG 0.639755 1_3:+55567584 Msa0126460:CDS
CCAAGTGGTTGGTACACAAG+TGG 0.645027 1_3:-55568570 None:intergenic
AACACTGGAGGAAAGAAAAG+CGG 0.645117 1_3:+55567596 Msa0126460:CDS
AAAACCACGAAGCGTGCCTG+TGG 0.652850 1_3:+55567686 Msa0126460:CDS
AAGTTACTCCAGCACAACCA+GGG 0.657159 1_3:-55568317 None:intergenic
TGGTGTTTGAATGAAGCTGA+GGG 0.668632 1_3:+55568400 Msa0126460:three_prime_UTR
GTGATGGTACGAATAATAGA+GGG 0.672584 1_3:+55567778 Msa0126460:CDS
TTGGTGTTTGAATGAAGCTG+AGG 0.673359 1_3:+55568399 Msa0126460:three_prime_UTR
TCCCTAGGATATCACTGACA+AGG 0.677029 1_3:-55566839 None:intergenic
GTAGTGTGTCATACCTGGAG+AGG 0.681902 1_3:-55566919 None:intergenic
GAATATTGGATTTCATTAGG+GGG 0.690334 1_3:+55568645 Msa0126460:three_prime_UTR
AATACCCAAAGATCTCTGCA+AGG 0.698026 1_3:-55566503 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATCTTTTAGATTTAAA+AGG + chr1_3:55565697-55565716 Msa0126460:intron 10.0%
!!! AATTTTAAAACCTTAAAATA+CGG + chr1_3:55566139-55566158 Msa0126460:intron 10.0%
!! GACAATAAAAAATAATAATT+TGG - chr1_3:55567290-55567309 None:intergenic 10.0%
!!! ATTATTATTTTTTATTGTCT+AGG + chr1_3:55567291-55567310 Msa0126460:intron 10.0%
!!! TTTTTTTTTTTTTGAAGGAA+GGG - chr1_3:55564292-55564311 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTGAAGGA+AGG - chr1_3:55564293-55564312 None:intergenic 15.0%
!!! GGTTTTTTTTTTTTTTTTGA+AGG - chr1_3:55564297-55564316 None:intergenic 15.0%
!! TACTAATGTATATATATTTC+AGG + chr1_3:55564891-55564910 Msa0126460:intron 15.0%
!!! CTTAAAAATGACATTTTTAT+TGG + chr1_3:55565478-55565497 Msa0126460:intron 15.0%
!!! ATTAAACTACTTTCTTTTAT+GGG - chr1_3:55565817-55565836 None:intergenic 15.0%
!! TATAATATTGCAATCTAATA+TGG + chr1_3:55565855-55565874 Msa0126460:intron 15.0%
!! TATAACACTGAAATTTAATA+TGG + chr1_3:55565994-55566013 Msa0126460:intron 15.0%
!! TCATATCAAATATCAAATAA+AGG - chr1_3:55566607-55566626 None:intergenic 15.0%
!! AACGTAATAAAATAAAGAAA+GGG - chr1_3:55566741-55566760 None:intergenic 15.0%
!! AAACGTAATAAAATAAAGAA+AGG - chr1_3:55566742-55566761 None:intergenic 15.0%
!! ATATATATTTAAACTATTGG+TGG + chr1_3:55567385-55567404 Msa0126460:intron 15.0%
!! ATACTAAGAATTAAAACAAA+AGG + chr1_3:55568132-55568151 Msa0126460:exon 15.0%
!! TTACAGTAAATAATGCAATT+GGG - chr1_3:55564474-55564493 None:intergenic 20.0%
!! TTTACAGTAAATAATGCAAT+TGG - chr1_3:55564475-55564494 None:intergenic 20.0%
!!! CTTTATTTCATGTTAATTGA+GGG + chr1_3:55564543-55564562 Msa0126460:intron 20.0%
!! ATCAGTTCAAATAACTTAAA+AGG - chr1_3:55564639-55564658 None:intergenic 20.0%
!! TTAAGTTATTTGAACTGATA+TGG + chr1_3:55564640-55564659 Msa0126460:intron 20.0%
!!! AATGAAAATTCAGAATTTTG+CGG - chr1_3:55564802-55564821 None:intergenic 20.0%
!!! TTTGTTGTTGAAAGAATTAA+AGG + chr1_3:55565123-55565142 Msa0126460:intron 20.0%
!! TACTAAAGATTCATATTGAT+CGG - chr1_3:55565225-55565244 None:intergenic 20.0%
!! GACAAAAAAAATTAGGTAAA+CGG - chr1_3:55565339-55565358 None:intergenic 20.0%
!! CAAAGTTGACAAAAAAAATT+AGG - chr1_3:55565346-55565365 None:intergenic 20.0%
!!! TTGAAACTTGAATTATTTTG+AGG + chr1_3:55565405-55565424 Msa0126460:intron 20.0%
!! AGTAATACAGCAAAATTATA+TGG - chr1_3:55565449-55565468 None:intergenic 20.0%
!! TTTATTGGAAATGTATCTTA+CGG + chr1_3:55565493-55565512 Msa0126460:intron 20.0%
!! AAACAGAGTGAAAAAAATAT+CGG - chr1_3:55565654-55565673 None:intergenic 20.0%
!!! CATTAAACTACTTTCTTTTA+TGG - chr1_3:55565818-55565837 None:intergenic 20.0%
!! AATCTTGTAAGTAAACAAAA+TGG + chr1_3:55566057-55566076 Msa0126460:intron 20.0%
!! ATATATTAAATTGCCACAAA+TGG - chr1_3:55566273-55566292 None:intergenic 20.0%
!!! AATAGTTGTTTAATTTTCCT+TGG + chr1_3:55566306-55566325 Msa0126460:intron 20.0%
!! TTGTATTCAAAATTCATAGA+TGG - chr1_3:55566334-55566353 None:intergenic 20.0%
!! ATATTAAGAAACACTTTGTA+TGG - chr1_3:55566403-55566422 None:intergenic 20.0%
!! TATTTGATATTTGATATGAC+TGG + chr1_3:55566608-55566627 Msa0126460:intron 20.0%
!!! GTTTTTCCAATAGTATTTTA+GGG + chr1_3:55566758-55566777 Msa0126460:intron 20.0%
!! TACAAACTAATGTTTATATG+CGG + chr1_3:55566800-55566819 Msa0126460:intron 20.0%
!!! TACTATTTTATTTGAAGAGT+TGG + chr1_3:55567062-55567081 Msa0126460:intron 20.0%
!! AAAAAAAATATGCTTCTACA+AGG - chr1_3:55567196-55567215 None:intergenic 20.0%
!! ACTTCATTAAAAAAGAAAAG+CGG - chr1_3:55567497-55567516 None:intergenic 20.0%
!!! GTAAGATATTTAAAGCAAAA+TGG + chr1_3:55568157-55568176 Msa0126460:three_prime_UTR 20.0%
!!! TTTTTCGTCTTCTTAATTAT+CGG + chr1_3:55568484-55568503 Msa0126460:three_prime_UTR 20.0%
! AAAACATACCATAGCAAATT+GGG - chr1_3:55564365-55564384 None:intergenic 25.0%
! TGATGCTGAAACTTAAATTA+GGG - chr1_3:55564514-55564533 None:intergenic 25.0%
! TTGATGCTGAAACTTAAATT+AGG - chr1_3:55564515-55564534 None:intergenic 25.0%
! CCTCAATTAACATGAAATAA+AGG - chr1_3:55564545-55564564 None:intergenic 25.0%
!! CCTTTATTTCATGTTAATTG+AGG + chr1_3:55564542-55564561 Msa0126460:intron 25.0%
!! GCAAAATTCTGAATTTTCAT+TGG + chr1_3:55564801-55564820 Msa0126460:intron 25.0%
!!! TGTATATATATTTCAGGTTG+AGG + chr1_3:55564897-55564916 Msa0126460:intron 25.0%
!! CTATGTGTTATTGAAGTTAA+AGG + chr1_3:55565088-55565107 Msa0126460:intron 25.0%
! TTTCAAGATACTGATAATCA+TGG - chr1_3:55565163-55565182 None:intergenic 25.0%
! ACTAAAGATTCATATTGATC+GGG - chr1_3:55565224-55565243 None:intergenic 25.0%
! TTAGTATCTATCTATCTGTT+TGG + chr1_3:55565239-55565258 Msa0126460:intron 25.0%
! AATGAATAGAGATTCATCAT+AGG - chr1_3:55565286-55565305 None:intergenic 25.0%
!!! CTTGAATTATTTTGAGGTTT+AGG + chr1_3:55565411-55565430 Msa0126460:intron 25.0%
! GATTCACGCTTAAAAAAAAA+TGG + chr1_3:55565531-55565550 Msa0126460:intron 25.0%
! AATTGTCTCTAACTTTGTTA+TGG + chr1_3:55565601-55565620 Msa0126460:intron 25.0%
! ATAAATTGTCTCAAGTGTAA+AGG + chr1_3:55566185-55566204 Msa0126460:intron 25.0%
! TTATTGAACTATAGTTCAGA+TGG + chr1_3:55566429-55566448 Msa0126460:intron 25.0%
! TATTGAACTATAGTTCAGAT+GGG + chr1_3:55566430-55566449 Msa0126460:intron 25.0%
!! AGTTTTTACATAGATGTATC+TGG - chr1_3:55566698-55566717 None:intergenic 25.0%
! AATAAAATAAAGAAAGGGAC+CGG - chr1_3:55566736-55566755 None:intergenic 25.0%
!! CGTTTTTCCAATAGTATTTT+AGG + chr1_3:55566757-55566776 Msa0126460:intron 25.0%
! ACAAACTAATGTTTATATGC+GGG + chr1_3:55566801-55566820 Msa0126460:intron 25.0%
!! CTTCTTTTCTCCTTAATATT+TGG - chr1_3:55566899-55566918 None:intergenic 25.0%
! AACATAACATTTAACACATG+TGG + chr1_3:55567021-55567040 Msa0126460:intron 25.0%
! GCTATACAAGTTAAATTTCT+TGG + chr1_3:55567127-55567146 Msa0126460:intron 25.0%
! ATATGATACAAACATGAGTT+TGG + chr1_3:55567322-55567341 Msa0126460:intron 25.0%
!!! GCTTTTCTTTTTTAATGAAG+TGG + chr1_3:55567496-55567515 Msa0126460:intron 25.0%
! TTTATTCTGTGAGTGAATAT+TGG + chr1_3:55568631-55568650 Msa0126460:three_prime_UTR 25.0%
! AGTGAATATTGGATTTCATT+AGG + chr1_3:55568642-55568661 Msa0126460:three_prime_UTR 25.0%
! GTGAATATTGGATTTCATTA+GGG + chr1_3:55568643-55568662 Msa0126460:three_prime_UTR 25.0%
! TGAATATTGGATTTCATTAG+GGG + chr1_3:55568644-55568663 Msa0126460:three_prime_UTR 25.0%
!! TTTTTGAAGGAAGGGATTTA+GGG - chr1_3:55564284-55564303 None:intergenic 30.0%
!!! TTTTTTGAAGGAAGGGATTT+AGG - chr1_3:55564285-55564304 None:intergenic 30.0%
GAACAAAGTGAAAGGATTTA+GGG - chr1_3:55564318-55564337 None:intergenic 30.0%
TGAACAAAGTGAAAGGATTT+AGG - chr1_3:55564319-55564338 None:intergenic 30.0%
GAAGAATTGAACAAAGTGAA+AGG - chr1_3:55564326-55564345 None:intergenic 30.0%
GAAAACATACCATAGCAAAT+TGG - chr1_3:55564366-55564385 None:intergenic 30.0%
GTGAGAACAAATTGATAGAA+CGG - chr1_3:55564400-55564419 None:intergenic 30.0%
! TTTAAGTTTCAGCATCAAGT+TGG + chr1_3:55564517-55564536 Msa0126460:intron 30.0%
TTAATTTATAACACCGACCT+CGG - chr1_3:55564723-55564742 None:intergenic 30.0%
TCAGTGTAAAGATAGTTTAC+TGG + chr1_3:55564827-55564846 Msa0126460:intron 30.0%
CAGTGTAAAGATAGTTTACT+GGG + chr1_3:55564828-55564847 Msa0126460:intron 30.0%
ACTCTTAGTTAACTTTCTTG+AGG + chr1_3:55564981-55565000 Msa0126460:CDS 30.0%
GCTTGAATTAATAATCAAGC+CGG - chr1_3:55565063-55565082 None:intergenic 30.0%
ACTTCAATAACACATAGTGA+TGG - chr1_3:55565085-55565104 None:intergenic 30.0%
! ATGTGAGTCATATCTTGTTT+CGG + chr1_3:55565186-55565205 Msa0126460:intron 30.0%
! TCATCATAGGAATTTAAGAC+TGG - chr1_3:55565273-55565292 None:intergenic 30.0%
AATGACAAATGAAAAGTGGT+TGG - chr1_3:55565374-55565393 None:intergenic 30.0%
!! ACCACTTTTCATTTGTCATT+TGG + chr1_3:55565374-55565393 Msa0126460:intron 30.0%
ACCAAATGACAAATGAAAAG+TGG - chr1_3:55565378-55565397 None:intergenic 30.0%
CTTACGGTTCATAATAAGAT+TGG + chr1_3:55565509-55565528 Msa0126460:intron 30.0%
!! CAACATTAATAGTTTGCTCA+TGG - chr1_3:55565580-55565599 None:intergenic 30.0%
AGAGTGAAAAAAATATCGGA+AGG - chr1_3:55565650-55565669 None:intergenic 30.0%
TTAAAAGGACATTGAAGAGA+TGG + chr1_3:55565712-55565731 Msa0126460:intron 30.0%
AATCTTGCAAGTAAGCAAAA+AGG + chr1_3:55565919-55565938 Msa0126460:intron 30.0%
AAAATTCATAGATGGTACCA+AGG - chr1_3:55566326-55566345 None:intergenic 30.0%
TTGATATTTGATATGACTGG+TGG + chr1_3:55566611-55566630 Msa0126460:intron 30.0%
ATAAAATAAAGAAAGGGACC+GGG - chr1_3:55566735-55566754 None:intergenic 30.0%
AGTAGTCCCTAAAATACTAT+TGG - chr1_3:55566767-55566786 None:intergenic 30.0%
TTGCATCACACCAAATATTA+AGG + chr1_3:55566886-55566905 Msa0126460:CDS 30.0%
CTACTAATTCTTCTCTCTTT+CGG + chr1_3:55566938-55566957 Msa0126460:intron 30.0%
CATGTGGTGAATTAGATTTA+TGG + chr1_3:55567037-55567056 Msa0126460:intron 30.0%
AAGAAAAGCGGTTTATACAA+GGG - chr1_3:55567485-55567504 None:intergenic 30.0%
AAAGAAAAGCGGTTTATACA+AGG - chr1_3:55567486-55567505 None:intergenic 30.0%
!!! GCGGATTTTTTCTATGAATT+TGG + chr1_3:55567638-55567657 Msa0126460:CDS 30.0%
GAATAGTGAAAAATCTGATC+TGG + chr1_3:55567830-55567849 Msa0126460:CDS 30.0%
! TTTTCTCCATTTCTACTTCT+AGG - chr1_3:55568113-55568132 None:intergenic 30.0%
AAAAAAACAGAGAAGGTAAC+TGG - chr1_3:55568469-55568488 None:intergenic 30.0%
GAATATTGGATTTCATTAGG+GGG + chr1_3:55568645-55568664 Msa0126460:three_prime_UTR 30.0%
TACATAACACAATCCTTGAT+AGG - chr1_3:55568703-55568722 None:intergenic 30.0%
CAGAAACAGAGAAGCAAAAT+TGG - chr1_3:55564428-55564447 None:intergenic 35.0%
GTTAAACTCTCAGTACCATA+TGG - chr1_3:55564701-55564720 None:intergenic 35.0%
! AGAATTTTGCGGCTACAAAT+TGG - chr1_3:55564791-55564810 None:intergenic 35.0%
GTAAGAACTAGATACTTGCA+AGG - chr1_3:55564874-55564893 None:intergenic 35.0%
!! TATATTTCAGGTTGAGGAGT+TGG + chr1_3:55564903-55564922 Msa0126460:intron 35.0%
AGTGGTGTTTATTGTTTAGC+CGG + chr1_3:55565041-55565060 Msa0126460:intron 35.0%
TAAACGGCTACAAAAAGTTC+AGG - chr1_3:55565323-55565342 None:intergenic 35.0%
ATGGTTATCAATTCGCGAAT+CGG - chr1_3:55565561-55565580 None:intergenic 35.0%
! TACTTTCTTTTATGGGCCAT+AGG - chr1_3:55565810-55565829 None:intergenic 35.0%
! ATGTGAAGAGCCGTATTTTA+AGG - chr1_3:55566152-55566171 None:intergenic 35.0%
AATTGTCTCAAGTGTAAAGG+AGG + chr1_3:55566188-55566207 Msa0126460:intron 35.0%
!! AATTTTGTAGCTGCCATTTG+TGG + chr1_3:55566257-55566276 Msa0126460:intron 35.0%
TTGAATACAAACACCAGACA+CGG + chr1_3:55566344-55566363 Msa0126460:intron 35.0%
CTCATCTCAAAGATTCTTTC+TGG + chr1_3:55566554-55566573 Msa0126460:intron 35.0%
!! GTATTTTAGGGACTACTGTA+AGG + chr1_3:55566770-55566789 Msa0126460:intron 35.0%
TGTGATGCAAACAAAGATTG+AGG - chr1_3:55566876-55566895 None:intergenic 35.0%
AATTAGTAGTGTGTCATACC+TGG - chr1_3:55566927-55566946 None:intergenic 35.0%
GTATTGCGTGTAATGCATTA+CGG - chr1_3:55566967-55566986 None:intergenic 35.0%
!!! GCAATACTGATTCTGTCTTT+TGG + chr1_3:55566980-55566999 Msa0126460:intron 35.0%
TGATACAAACATGAGTTTGG+TGG + chr1_3:55567325-55567344 Msa0126460:intron 35.0%
!! TGGATACTTGCACTTTTTAG+TGG + chr1_3:55567516-55567535 Msa0126460:intron 35.0%
!! GGATACTTGCACTTTTTAGT+GGG + chr1_3:55567517-55567536 Msa0126460:intron 35.0%
! GAAAAGTGCAACATCTATCA+AGG - chr1_3:55567543-55567562 None:intergenic 35.0%
AACATCCATTCAACAAACAC+TGG + chr1_3:55567581-55567600 Msa0126460:CDS 35.0%
! CTTCGTGGTTTTTGTTCATT+AGG - chr1_3:55567678-55567697 None:intergenic 35.0%
AGTGATGGTACGAATAATAG+AGG + chr1_3:55567777-55567796 Msa0126460:CDS 35.0%
GTGATGGTACGAATAATAGA+GGG + chr1_3:55567778-55567797 Msa0126460:CDS 35.0%
! GCTGTTTGAGTTCTTTCTTA+GGG - chr1_3:55567880-55567899 None:intergenic 35.0%
! TGCTGTTTGAGTTCTTTCTT+AGG - chr1_3:55567881-55567900 None:intergenic 35.0%
! ACCATTCCTTTTATTCAGTG+GGG - chr1_3:55567934-55567953 None:intergenic 35.0%
! GACCATTCCTTTTATTCAGT+GGG - chr1_3:55567935-55567954 None:intergenic 35.0%
! TGACCATTCCTTTTATTCAG+TGG - chr1_3:55567936-55567955 None:intergenic 35.0%
AGAATGTTTGCTCATGCTTT+GGG + chr1_3:55568059-55568078 Msa0126460:CDS 35.0%
TCTGTTCCTAGAAGTAGAAA+TGG + chr1_3:55568104-55568123 Msa0126460:CDS 35.0%
TCCTTGATTGTGATTGAAAC+CGG - chr1_3:55568220-55568239 None:intergenic 35.0%
!! ATTCACGTTACCTTTTGACT+TGG - chr1_3:55568352-55568371 None:intergenic 35.0%
GAAGACGAAAAAAACAGAGA+AGG - chr1_3:55568476-55568495 None:intergenic 35.0%
TTCGTCTTCTTAATTATCGG+TGG + chr1_3:55568487-55568506 Msa0126460:three_prime_UTR 35.0%
TCGTCTTCTTAATTATCGGT+GGG + chr1_3:55568488-55568507 Msa0126460:three_prime_UTR 35.0%
ACACAATCCTTGATAGGATA+GGG - chr1_3:55568697-55568716 None:intergenic 35.0%
AACACAATCCTTGATAGGAT+AGG - chr1_3:55568698-55568717 None:intergenic 35.0%
!! GAGTATGACCCAATTTGCTA+TGG + chr1_3:55564354-55564373 Msa0126460:CDS 40.0%
! TTTGAACTGATATGGCTCTG+TGG + chr1_3:55564648-55564667 Msa0126460:intron 40.0%
! GAATGACTTGTCATGCCATA+TGG + chr1_3:55564683-55564702 Msa0126460:intron 40.0%
GCAATATCACGAGTTCTCAT+TGG - chr1_3:55564759-55564778 None:intergenic 40.0%
CAAGCATCTCGTTCTTACAA+TGG + chr1_3:55564954-55564973 Msa0126460:CDS 40.0%
TAGAGGTTACCTTGTATCCT+CGG - chr1_3:55565007-55565026 None:intergenic 40.0%
ACAAGGTAACCTCTATGAGA+TGG + chr1_3:55565012-55565031 Msa0126460:intron 40.0%
CAAGGTAACCTCTATGAGAT+GGG + chr1_3:55565013-55565032 Msa0126460:intron 40.0%
ACTCAAAACCCATCTCATAG+AGG - chr1_3:55565024-55565043 None:intergenic 40.0%
!!! TCTATGAGATGGGTTTTGAG+TGG + chr1_3:55565023-55565042 Msa0126460:intron 40.0%
GGCTACAAAAAGTTCAGGTA+GGG - chr1_3:55565318-55565337 None:intergenic 40.0%
GGACAAATTTGAGCTCTCAA+TGG + chr1_3:55565622-55565641 Msa0126460:intron 40.0%
!! AGAGTGGCTCTAAGTTTGTT+TGG + chr1_3:55566219-55566238 Msa0126460:intron 40.0%
CTATAGTTCAGATGGGATCT+TGG + chr1_3:55566437-55566456 Msa0126460:intron 40.0%
TTCAGATGGGATCTTGGAAT+TGG + chr1_3:55566443-55566462 Msa0126460:CDS 40.0%
AGACGGTTGTAAGAGTTCAT+TGG - chr1_3:55566471-55566490 None:intergenic 40.0%
AATACCCAAAGATCTCTGCA+AGG - chr1_3:55566506-55566525 None:intergenic 40.0%
TATTTGATATGACTGGTGGC+AGG + chr1_3:55566615-55566634 Msa0126460:intron 40.0%
! AGGTTTGCTCATGAATCTGT+TGG + chr1_3:55566635-55566654 Msa0126460:intron 40.0%
AGAAGATCGCCATTTGATTC+TGG + chr1_3:55566664-55566683 Msa0126460:CDS 40.0%
GACATCTCTCCAGAATCAAA+TGG - chr1_3:55566676-55566695 None:intergenic 40.0%
!! AACTACCCTTTTAACTCTCC+CGG + chr1_3:55566714-55566733 Msa0126460:intron 40.0%
ATATCACTGACAAGGATTGG+AGG - chr1_3:55566834-55566853 None:intergenic 40.0%
AGGATATCACTGACAAGGAT+TGG - chr1_3:55566837-55566856 None:intergenic 40.0%
ATCCTTGTCAGTGATATCCT+AGG + chr1_3:55566837-55566856 Msa0126460:CDS 40.0%
TCCTTGTCAGTGATATCCTA+GGG + chr1_3:55566838-55566857 Msa0126460:CDS 40.0%
AAGAGTTGGAACAGTACTGT+TGG + chr1_3:55567076-55567095 Msa0126460:intron 40.0%
ATCCATTCAACAAACACTGG+AGG + chr1_3:55567584-55567603 Msa0126460:CDS 40.0%
! TTCCTCCAGTGTTTGTTGAA+TGG - chr1_3:55567589-55567608 None:intergenic 40.0%
AACACTGGAGGAAAGAAAAG+CGG + chr1_3:55567596-55567615 Msa0126460:CDS 40.0%
CGCAAAAAATCCGAATGAGT+TGG + chr1_3:55567752-55567771 Msa0126460:CDS 40.0%
CCATCACTAACCAACTCATT+CGG - chr1_3:55567765-55567784 None:intergenic 40.0%
AACAGCAGAACAAGAAACAC+TGG + chr1_3:55567894-55567913 Msa0126460:CDS 40.0%
! GAGCAAAGAGTGCATGAAAA+AGG + chr1_3:55568016-55568035 Msa0126460:CDS 40.0%
!! TGCATGAAAAAGGAGCACTT+AGG + chr1_3:55568026-55568045 Msa0126460:CDS 40.0%
GAGAATGTTTGCTCATGCTT+TGG + chr1_3:55568058-55568077 Msa0126460:CDS 40.0%
TGGTAATCTATTGCTCCCAA+TGG + chr1_3:55568177-55568196 Msa0126460:three_prime_UTR 40.0%
CCTTGATTGTGATTGAAACC+GGG - chr1_3:55568219-55568238 None:intergenic 40.0%
! CAAATTGCTTAGTTCTTCCC+TGG + chr1_3:55568300-55568319 Msa0126460:three_prime_UTR 40.0%
TAACAAGCAGCCAAGTCAAA+AGG + chr1_3:55568339-55568358 Msa0126460:three_prime_UTR 40.0%
AGCTTCATTCAAACACCAAC+AGG - chr1_3:55568398-55568417 None:intergenic 40.0%
! TTGGTGTTTGAATGAAGCTG+AGG + chr1_3:55568399-55568418 Msa0126460:three_prime_UTR 40.0%
TGGTGTTTGAATGAAGCTGA+GGG + chr1_3:55568400-55568419 Msa0126460:three_prime_UTR 40.0%
CGTCTTCTTAATTATCGGTG+GGG + chr1_3:55568489-55568508 Msa0126460:three_prime_UTR 40.0%
! TGGGGTACTAAGTTCGATTT+GGG - chr1_3:55568529-55568548 None:intergenic 40.0%
! TTGGGGTACTAAGTTCGATT+TGG - chr1_3:55568530-55568549 None:intergenic 40.0%
TGCGAGTGTTTGCAAACTTT+GGG - chr1_3:55568548-55568567 None:intergenic 40.0%
ATTGGATTTCATTAGGGGGA+AGG + chr1_3:55568649-55568668 Msa0126460:three_prime_UTR 40.0%
ATGACTTCCCTATCCTATCA+AGG + chr1_3:55568687-55568706 Msa0126460:three_prime_UTR 40.0%
! TGGTACTGAGAGTTTAACCG+AGG + chr1_3:55564703-55564722 Msa0126460:intron 45.0%
ACTGAGAGTTTAACCGAGGT+CGG + chr1_3:55564707-55564726 Msa0126460:intron 45.0%
CACGAGTTCTCATTGGATGT+CGG - chr1_3:55564752-55564771 None:intergenic 45.0%
TGCGGCTACAAATTGGACTT+GGG - chr1_3:55564784-55564803 None:intergenic 45.0%
TTGCGGCTACAAATTGGACT+TGG - chr1_3:55564785-55564804 None:intergenic 45.0%
!!! GGAGTTGGCTTTTCTTGTGA+AGG + chr1_3:55564918-55564937 Msa0126460:intron 45.0%
GTAAGAACGAGATGCTTGCA+AGG - chr1_3:55564952-55564971 None:intergenic 45.0%
AGTTAACTTTCTTGAGGCCG+AGG + chr1_3:55564987-55565006 Msa0126460:CDS 45.0%
CGGCTACAAAAAGTTCAGGT+AGG - chr1_3:55565319-55565338 None:intergenic 45.0%
!! AAAGGAGGAGCTTTTGAGAG+TGG + chr1_3:55566203-55566222 Msa0126460:intron 45.0%
TAGGAGTCTCAATGCTTCGT+CGG + chr1_3:55566374-55566393 Msa0126460:intron 45.0%
CAAGGCGATGTAAGAGAAGA+CGG - chr1_3:55566488-55566507 None:intergenic 45.0%
ATCGCCTTGCAGAGATCTTT+GGG + chr1_3:55566499-55566518 Msa0126460:CDS 45.0%
! GCTCATGAATCTGTTGGTGA+AGG + chr1_3:55566641-55566660 Msa0126460:CDS 45.0%
TCCCTAGGATATCACTGACA+AGG - chr1_3:55566842-55566861 None:intergenic 45.0%
CTTATTTGCTTGCTCGTGAG+CGG + chr1_3:55567619-55567638 Msa0126460:CDS 45.0%
CTAGTGCATGCGCAATCATT+CGG - chr1_3:55567719-55567738 None:intergenic 45.0%
!! CCGAATGAGTTGGTTAGTGA+TGG + chr1_3:55567762-55567781 Msa0126460:CDS 45.0%
ATGCAGCCCCACTGAATAAA+AGG + chr1_3:55567925-55567944 Msa0126460:CDS 45.0%
GCCCCACTGAATAAAAGGAA+TGG + chr1_3:55567930-55567949 Msa0126460:CDS 45.0%
! TCTTTTCCAGCTTGAGACGA+TGG - chr1_3:55567984-55568003 None:intergenic 45.0%
TCGTCTCAAGCTGGAAAAGA+AGG + chr1_3:55567984-55568003 Msa0126460:CDS 45.0%
CGTCTCAAGCTGGAAAAGAA+GGG + chr1_3:55567985-55568004 Msa0126460:CDS 45.0%
!! TCATGCTTTGGGAGTACACT+CGG + chr1_3:55568070-55568089 Msa0126460:CDS 45.0%
CTATTGCTCCCAATGGATCT+TGG + chr1_3:55568184-55568203 Msa0126460:three_prime_UTR 45.0%
AGCACCTACCAAGATCCATT+GGG - chr1_3:55568195-55568214 None:intergenic 45.0%
AAGCACCTACCAAGATCCAT+TGG - chr1_3:55568196-55568215 None:intergenic 45.0%
CCCGGTTTCAATCACAATCA+AGG + chr1_3:55568216-55568235 Msa0126460:three_prime_UTR 45.0%
AAGTTACTCCAGCACAACCA+GGG - chr1_3:55568320-55568339 None:intergenic 45.0%
TAAGTTACTCCAGCACAACC+AGG - chr1_3:55568321-55568340 None:intergenic 45.0%
TCGAGTCATGTTTGACCTGT+TGG + chr1_3:55568380-55568399 Msa0126460:three_prime_UTR 45.0%
! GGGGTACTAAGTTCGATTTG+GGG - chr1_3:55568528-55568547 None:intergenic 45.0%
GCGAGTGTTTGCAAACTTTG+GGG - chr1_3:55568547-55568566 None:intergenic 45.0%
GTGCGAGTGTTTGCAAACTT+TGG - chr1_3:55568549-55568568 None:intergenic 45.0%
CACTTGTGTACCAACCACTT+GGG + chr1_3:55568571-55568590 Msa0126460:three_prime_UTR 45.0%
GATTTCATTAGGGGGAAGGT+AGG + chr1_3:55568653-55568672 Msa0126460:three_prime_UTR 45.0%
!! AATATATATATTTAAACTAT+TGG + chr1_3:55567382-55567401 Msa0126460:intron 5.0%
!!! ATATTTAATTTTTCATTTTA+TGG - chr1_3:55567433-55567452 None:intergenic 5.0%
TTCTTGAGGCCGAGGATACA+AGG + chr1_3:55564995-55565014 Msa0126460:CDS 50.0%
GTGTGCTGTATGCGTACCTA+TGG + chr1_3:55565791-55565810 Msa0126460:intron 50.0%
CACCAGACACGGATAAACCT+AGG + chr1_3:55566355-55566374 Msa0126460:intron 50.0%
CTCCTAGGTTTATCCGTGTC+TGG - chr1_3:55566360-55566379 None:intergenic 50.0%
!! GACGAAGCATTGAGACTCCT+AGG - chr1_3:55566375-55566394 None:intergenic 50.0%
AGGAGTCTCAATGCTTCGTC+GGG + chr1_3:55566375-55566394 Msa0126460:intron 50.0%
CATCGCCTTGCAGAGATCTT+TGG + chr1_3:55566498-55566517 Msa0126460:CDS 50.0%
AGGGACCGGGAGAGTTAAAA+GGG - chr1_3:55566722-55566741 None:intergenic 50.0%
AAGGGACCGGGAGAGTTAAA+AGG - chr1_3:55566723-55566742 None:intergenic 50.0%
GAGGTTCATCATACGTCCCT+AGG - chr1_3:55566857-55566876 None:intergenic 50.0%
AGGAGAAAAGAAGCCTCTCC+AGG + chr1_3:55566906-55566925 Msa0126460:CDS 50.0%
GTAGTGTGTCATACCTGGAG+AGG - chr1_3:55566922-55566941 None:intergenic 50.0%
CGAATGATTGCGCATGCACT+AGG + chr1_3:55567717-55567736 Msa0126460:CDS 50.0%
! GGTGGCGAACTTTTGTCAAC+TGG - chr1_3:55567963-55567982 None:intergenic 50.0%
TTTCCAGCTTGAGACGATGG+TGG - chr1_3:55567981-55568000 None:intergenic 50.0%
!! CATGCTTTGGGAGTACACTC+GGG + chr1_3:55568071-55568090 Msa0126460:CDS 50.0%
! TTTGGGAGTACACTCGGGAA+AGG + chr1_3:55568076-55568095 Msa0126460:CDS 50.0%
TGCTCCCAATGGATCTTGGT+AGG + chr1_3:55568188-55568207 Msa0126460:three_prime_UTR 50.0%
TAGTTCTTCCCTGGTTGTGC+TGG + chr1_3:55568309-55568328 Msa0126460:three_prime_UTR 50.0%
! CCAAGTGGTTGGTACACAAG+TGG - chr1_3:55568573-55568592 None:intergenic 50.0%
CCACTTGTGTACCAACCACT+TGG + chr1_3:55568570-55568589 Msa0126460:three_prime_UTR 50.0%
TTGTGTACCAACCACTTGGG+CGG + chr1_3:55568574-55568593 Msa0126460:three_prime_UTR 50.0%
AAAACCACGAAGCGTGCCTG+TGG + chr1_3:55567686-55567705 Msa0126460:CDS 55.0%
TGCATGCGCAATCATTCGGC+GGG - chr1_3:55567715-55567734 None:intergenic 55.0%
GTGCATGCGCAATCATTCGG+CGG - chr1_3:55567716-55567735 None:intergenic 55.0%
GGAGTACACTCGGGAAAGGA+TGG + chr1_3:55568080-55568099 Msa0126460:CDS 55.0%
GGATCTTGGTAGGTGCTTCC+CGG + chr1_3:55568198-55568217 Msa0126460:three_prime_UTR 55.0%
!! ATCATTCGGCGGGCTACCAC+AGG - chr1_3:55567705-55567724 None:intergenic 60.0%
TCGCCACCATCGTCTCAAGC+TGG + chr1_3:55567975-55567994 Msa0126460:CDS 60.0%
TGTACCAACCACTTGGGCGG+TGG + chr1_3:55568577-55568596 Msa0126460:three_prime_UTR 60.0%
TACAGCAACCACCGCCCAAG+TGG - chr1_3:55568588-55568607 None:intergenic 60.0%
GCTACCACAGGCACGCTTCG+TGG - chr1_3:55567693-55567712 None:intergenic 65.0%
GCAACCACCGCCCAAGTGGT+TGG - chr1_3:55568584-55568603 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 55564208 55568759 55564208 ID=Msa0126460;Name=Msa0126460
chr1_3 mRNA 55564208 55568759 55564208 ID=Msa0126460-mRNA-1;Parent=Msa0126460;Name=Msa0126460-mRNA-1;_AED=0.16;_eAED=0.16;_QI=144|0.83|0.85|1|0.83|0.71|7|594|309
chr1_3 exon 55564208 55564375 55564208 ID=Msa0126460-mRNA-1:exon:17297;Parent=Msa0126460-mRNA-1
chr1_3 exon 55564940 55565016 55564940 ID=Msa0126460-mRNA-1:exon:17298;Parent=Msa0126460-mRNA-1
chr1_3 exon 55566443 55566520 55566443 ID=Msa0126460-mRNA-1:exon:17299;Parent=Msa0126460-mRNA-1
chr1_3 exon 55566637 55566708 55566637 ID=Msa0126460-mRNA-1:exon:17300;Parent=Msa0126460-mRNA-1
chr1_3 exon 55566830 55566927 55566830 ID=Msa0126460-mRNA-1:exon:17301;Parent=Msa0126460-mRNA-1
chr1_3 exon 55567565 55568510 55567565 ID=Msa0126460-mRNA-1:exon:17302;Parent=Msa0126460-mRNA-1
chr1_3 exon 55568531 55568759 55568531 ID=Msa0126460-mRNA-1:exon:17303;Parent=Msa0126460-mRNA-1
chr1_3 five_prime_UTR 55564208 55564351 55564208 ID=Msa0126460-mRNA-1:five_prime_utr;Parent=Msa0126460-mRNA-1
chr1_3 CDS 55564352 55564375 55564352 ID=Msa0126460-mRNA-1:cds;Parent=Msa0126460-mRNA-1
chr1_3 CDS 55564940 55565016 55564940 ID=Msa0126460-mRNA-1:cds;Parent=Msa0126460-mRNA-1
chr1_3 CDS 55566443 55566520 55566443 ID=Msa0126460-mRNA-1:cds;Parent=Msa0126460-mRNA-1
chr1_3 CDS 55566637 55566708 55566637 ID=Msa0126460-mRNA-1:cds;Parent=Msa0126460-mRNA-1
chr1_3 CDS 55566830 55566927 55566830 ID=Msa0126460-mRNA-1:cds;Parent=Msa0126460-mRNA-1
chr1_3 CDS 55567565 55568145 55567565 ID=Msa0126460-mRNA-1:cds;Parent=Msa0126460-mRNA-1
chr1_3 three_prime_UTR 55568146 55568510 55568146 ID=Msa0126460-mRNA-1:three_prime_utr;Parent=Msa0126460-mRNA-1
chr1_3 three_prime_UTR 55568531 55568759 55568531 ID=Msa0126460-mRNA-1:three_prime_utr;Parent=Msa0126460-mRNA-1
Gene Sequence

>Msa0126460

ATGAGTATGACCCAATTTGCTATGGACAATCTTCCTTGCAAGCATCTCGTTCTTACAATGGAAGAACTCTTAGTTAACTTTCTTGAGGCCGAGGATACAAGTTCAGATGGGATCTTGGAATTGGAGCCAATGAACTCTTACAACCGTCTTCTCTTACATCGCCTTGCAGAGATCTTTGGGTTTGCTCATGAATCTGTTGGTGAAGGAGAAGATCGCCATTTGATTCTGGAGAGATGTCCAGATACATCTATACCTCCAATCCTTGTCAGTGATATCCTAGGGACGTATGATGAACCTCAATCTTTGTTTGCATCACACCAAATATTAAGGAGAAAAGAAGCCTCTCCAGTTTCACAGACAAATACAACATCCATTCAACAAACACTGGAGGAAAGAAAAGCGGCTTATTTGCTTGCTCGTGAGCGGATTTTTTCTATGAATTTGGAAGATGCAAAAGAGCCTAATGAACAAAAACCACGAAGCGTGCCTGTGGTAGCCCGCCGAATGATTGCGCATGCACTAGGTCAAAGAATCAACGCAAAAAATCCGAATGAGTTGGTTAGTGATGGTACGAATAATAGAGGGTTCTTAGATGAATTAAATGCTCAAGATAAGAATAGTGAAAAATCTGATCTGGCAAAAGATTTTGAAGAGTCTCTATCCCTAAGAAAGAACTCAAACAGCAGAACAAGAAACACTGGTAGTTCTAATGCAGCCCCACTGAATAAAAGGAATGGTCAAACACCAGTTGACAAAAGTTCGCCACCATCGTCTCAAGCTGGAAAAGAAGGGCAAAGTGTGAGCAAAGAGTGCATGAAAAAGGAGCACTTAGGAGCTGCGAAGAGAATGTTTGCTCATGCTTTGGGAGTACACTCGGGAAAGGATGGTTCTGTTCCTAGAAGTAGAAATGGAGAAAATACTAAGAATTAA

Protein sequence

>Msa0126460

MSMTQFAMDNLPCKHLVLTMEELLVNFLEAEDTSSDGILELEPMNSYNRLLLHRLAEIFGFAHESVGEGEDRHLILERCPDTSIPPILVSDILGTYDEPQSLFASHQILRRKEASPVSQTNTTSIQQTLEERKAAYLLARERIFSMNLEDAKEPNEQKPRSVPVVARRMIAHALGQRINAKNPNELVSDGTNNRGFLDELNAQDKNSEKSDLAKDFEESLSLRKNSNSRTRNTGSSNAAPLNKRNGQTPVDKSSPPSSQAGKEGQSVSKECMKKEHLGAAKRMFAHALGVHSGKDGSVPRSRNGENTKN*