Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078910 | XP_024637422.1 | 77.027 | 148 | 31 | 1 | 63 | 207 | 139 | 286 | 4.07e-71 | 228 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078910 | sp|Q9ZVQ6|P2B10_ARATH | 35.811 | 148 | 77 | 6 | 63 | 206 | 135 | 268 | 1.23e-18 | 84.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078910 | A0A396JQM2 | 77.027 | 148 | 31 | 1 | 63 | 207 | 170 | 317 | 4.88e-71 | 228 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0078910 | Msa0171450 | 0.913660 | 4.754855e-84 | -8.615850e-47 |
| Msa0078910 | Msa1200010 | 0.800269 | 1.559866e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078910 | MtrunA17_Chr1g0189701 | 77.027 | 148 | 31 | 1 | 63 | 207 | 170 | 317 | 9.40e-75 | 228 |
| Msa0078910 | MtrunA17_Chr1g0189711 | 56.494 | 154 | 47 | 6 | 63 | 207 | 133 | 275 | 1.47e-43 | 147 |
| Msa0078910 | MtrunA17_Chr1g0189611 | 56.291 | 151 | 44 | 6 | 63 | 207 | 131 | 265 | 1.71e-39 | 136 |
| Msa0078910 | MtrunA17_Chr1g0189821 | 56.376 | 149 | 48 | 6 | 63 | 207 | 131 | 266 | 2.45e-39 | 135 |
| Msa0078910 | MtrunA17_Chr1g0189721 | 53.642 | 151 | 51 | 6 | 63 | 207 | 128 | 265 | 2.78e-37 | 130 |
| Msa0078910 | MtrunA17_Chr1g0189751 | 52.318 | 151 | 53 | 5 | 63 | 207 | 128 | 265 | 5.62e-37 | 130 |
| Msa0078910 | MtrunA17_Chr1g0189541 | 51.678 | 149 | 52 | 6 | 63 | 207 | 52 | 184 | 4.22e-35 | 122 |
| Msa0078910 | MtrunA17_Chr1g0189621 | 52.318 | 151 | 53 | 6 | 63 | 207 | 127 | 264 | 1.49e-33 | 120 |
| Msa0078910 | MtrunA17_Chr1g0203281 | 49.057 | 159 | 53 | 6 | 63 | 207 | 128 | 272 | 2.32e-32 | 117 |
| Msa0078910 | MtrunA17_Chr1g0189671 | 45.570 | 158 | 60 | 6 | 63 | 207 | 128 | 272 | 3.76e-30 | 112 |
| Msa0078910 | MtrunA17_Chr7g0260801 | 47.020 | 151 | 59 | 7 | 63 | 207 | 139 | 274 | 3.21e-29 | 109 |
| Msa0078910 | MtrunA17_Chr3g0097191 | 48.000 | 150 | 59 | 6 | 63 | 207 | 132 | 267 | 7.35e-29 | 108 |
| Msa0078910 | MtrunA17_Chr1g0157451 | 47.403 | 154 | 66 | 8 | 63 | 207 | 136 | 283 | 2.11e-28 | 108 |
| Msa0078910 | MtrunA17_Chr3g0095261 | 50.781 | 128 | 48 | 5 | 85 | 207 | 166 | 283 | 5.22e-28 | 106 |
| Msa0078910 | MtrunA17_Chr1g0189641 | 45.695 | 151 | 71 | 5 | 63 | 207 | 128 | 273 | 7.67e-28 | 106 |
| Msa0078910 | MtrunA17_Chr1g0189651 | 48.276 | 145 | 57 | 6 | 63 | 207 | 53 | 179 | 4.59e-27 | 101 |
| Msa0078910 | MtrunA17_Chr1g0189661 | 45.455 | 154 | 69 | 8 | 63 | 207 | 131 | 278 | 7.91e-27 | 103 |
| Msa0078910 | MtrunA17_Chr3g0078331 | 39.080 | 174 | 65 | 4 | 63 | 207 | 154 | 315 | 2.67e-25 | 100 |
| Msa0078910 | MtrunA17_Chr1g0188311 | 40.385 | 156 | 58 | 5 | 51 | 184 | 11 | 153 | 4.32e-24 | 93.2 |
| Msa0078910 | MtrunA17_Chr1g0190071 | 42.331 | 163 | 63 | 7 | 63 | 207 | 132 | 281 | 2.78e-23 | 94.4 |
| Msa0078910 | MtrunA17_Chr3g0102081 | 47.321 | 112 | 44 | 3 | 63 | 171 | 24 | 123 | 4.38e-23 | 89.7 |
| Msa0078910 | MtrunA17_Chr2g0317291 | 44.295 | 149 | 62 | 6 | 63 | 204 | 78 | 212 | 1.52e-22 | 90.9 |
| Msa0078910 | MtrunA17_Chr7g0272091 | 40.000 | 160 | 72 | 6 | 63 | 207 | 133 | 283 | 1.66e-22 | 92.0 |
| Msa0078910 | MtrunA17_Chr1g0203331 | 46.043 | 139 | 46 | 5 | 63 | 184 | 113 | 239 | 2.02e-22 | 91.3 |
| Msa0078910 | MtrunA17_Chr1g0189781 | 40.397 | 151 | 71 | 5 | 63 | 207 | 136 | 273 | 1.51e-21 | 89.4 |
| Msa0078910 | MtrunA17_Chr3g0143881 | 43.089 | 123 | 53 | 3 | 85 | 207 | 2 | 107 | 1.23e-20 | 82.8 |
| Msa0078910 | MtrunA17_Chr1g0192371 | 36.538 | 156 | 79 | 5 | 63 | 207 | 135 | 281 | 5.20e-20 | 85.5 |
| Msa0078910 | MtrunA17_Chr1g0189631 | 41.346 | 104 | 52 | 2 | 85 | 179 | 2 | 105 | 2.49e-15 | 69.3 |
| Msa0078910 | MtrunA17_Chr1g0189591 | 31.579 | 171 | 86 | 6 | 63 | 207 | 141 | 306 | 1.31e-13 | 68.2 |
| Msa0078910 | MtrunA17_Chr1g0189761 | 52.727 | 55 | 26 | 0 | 153 | 207 | 40 | 94 | 5.55e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078910 | AT2G02360.1 | 35.811 | 148 | 77 | 6 | 63 | 206 | 135 | 268 | 1.25e-19 | 84.7 |
| Msa0078910 | AT2G02340.1 | 34.568 | 162 | 82 | 8 | 56 | 206 | 153 | 301 | 9.23e-13 | 66.2 |
| Msa0078910 | AT1G09155.1 | 30.435 | 161 | 92 | 5 | 63 | 207 | 124 | 280 | 1.43e-12 | 65.5 |
| Msa0078910 | AT1G56240.1 | 30.435 | 161 | 90 | 6 | 63 | 206 | 125 | 280 | 1.11e-11 | 62.8 |
| Msa0078910 | AT1G80110.1 | 35.374 | 147 | 79 | 7 | 63 | 206 | 122 | 255 | 2.53e-11 | 61.6 |
| Msa0078910 | AT2G02240.1 | 31.724 | 145 | 88 | 5 | 63 | 206 | 182 | 316 | 6.49e-11 | 60.8 |
Find 84 sgRNAs with CRISPR-Local
Find 362 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGATATTGTCACAAAATA+AGG | 0.148454 | 1_2:+56592840 | None:intergenic |
| TAAGCTGCATACTGAGTATT+TGG | 0.174774 | 1_2:+56592405 | None:intergenic |
| TTAAATGACTAGAATAAATT+TGG | 0.191069 | 1_2:+56591845 | None:intergenic |
| GGAGAAGACAGAGAGATTTC+TGG | 0.196118 | 1_2:-56596028 | Msa0078910:five_prime_UTR |
| TCATCTTGACTTCAGCTTCT+AGG | 0.217165 | 1_2:+56592154 | None:intergenic |
| CCAATTGTAATAATCATAAT+TGG | 0.256489 | 1_2:+56594977 | None:intergenic |
| CCTAGCATTTATAAAGAGTT+TGG | 0.268393 | 1_2:+56591937 | None:intergenic |
| GGCATAAAGCGTTAGATATA+AGG | 0.269907 | 1_2:+56594894 | None:intergenic |
| GAATTTGCTATTTAATGATT+TGG | 0.273005 | 1_2:-56591893 | Msa0078910:three_prime_UTR |
| TATTCTAGTCATTTAAATTC+TGG | 0.289160 | 1_2:-56591838 | Msa0078910:three_prime_UTR |
| ATAATAAAATGTTGAAAAGT+TGG | 0.334518 | 1_2:+56591971 | None:intergenic |
| TCACGAAGCTCAGCGACTTC+AGG | 0.347960 | 1_2:+56592489 | None:intergenic |
| CTGAGCTTCGTGATGTTGGC+TGG | 0.357761 | 1_2:-56592479 | Msa0078910:CDS |
| AACGCTTTATGCCAGATTCC+AGG | 0.368395 | 1_2:-56594884 | Msa0078910:intron |
| AAGCTGCATACTGAGTATTT+GGG | 0.374712 | 1_2:+56592406 | None:intergenic |
| CCAATTATGATTATTACAAT+TGG | 0.379497 | 1_2:-56594977 | Msa0078910:exon |
| CTTAAAGCTAACCTGGAATC+TGG | 0.384483 | 1_2:+56594873 | None:intergenic |
| CAACTGGAAATTTCTCTTTG+AGG | 0.385453 | 1_2:-56595991 | Msa0078910:intron |
| TGCAGCTTATCTTGTGTTCA+AGG | 0.402682 | 1_2:-56592391 | Msa0078910:CDS |
| GTTAGGGAGCAAAGAAGCTT+TGG | 0.403648 | 1_2:-56596049 | Msa0078910:five_prime_UTR |
| TTAAATTCTGGTCATGTGGC+AGG | 0.405685 | 1_2:-56591826 | Msa0078910:three_prime_UTR |
| TTGATATTGTCACAAAATAA+GGG | 0.410655 | 1_2:+56592841 | None:intergenic |
| TTCAAGGTGATTGATGTCAT+TGG | 0.424874 | 1_2:-56592375 | Msa0078910:CDS |
| GGACAAACTACTGCATCAAC+TGG | 0.427352 | 1_2:-56596007 | Msa0078910:five_prime_UTR |
| CTGATTGTGATTAGTACAAC+TGG | 0.431360 | 1_2:-56595000 | Msa0078910:intron |
| AGCTGGAGTGAGGACTTGTT+AGG | 0.435097 | 1_2:-56596066 | Msa0078910:five_prime_UTR |
| TACTTGAAGGAATAGAAGTT+AGG | 0.437558 | 1_2:-56592086 | Msa0078910:CDS |
| CACGAAGCTCAGCGACTTCA+GGG | 0.439334 | 1_2:+56592490 | None:intergenic |
| CGATGTTGGTTGTTATAAGC+TGG | 0.440247 | 1_2:-56596083 | Msa0078910:five_prime_UTR |
| TTCTCAGTTGGTGTGGGAAG+TGG | 0.440820 | 1_2:-56592330 | Msa0078910:CDS |
| ACTAAGAAACCACTGATTAG+TGG | 0.443419 | 1_2:-56596364 | Msa0078910:five_prime_UTR |
| AACACACGTCTCTTACTTGA+AGG | 0.444343 | 1_2:-56592099 | Msa0078910:CDS |
| ATGGGACAGTTCTTCAGTTC+AGG | 0.446867 | 1_2:-56592177 | Msa0078910:CDS |
| ATAAGGAAACAATACTTTAC+CGG | 0.452789 | 1_2:+56594911 | None:intergenic |
| AAATGGAGGATTTGTGAATG+AGG | 0.462488 | 1_2:+56596253 | None:intergenic |
| GTCGCTGAGCTTCGTGATGT+TGG | 0.464911 | 1_2:-56592483 | Msa0078910:CDS |
| GTTGCTTAATTGTCTTACTT+AGG | 0.466051 | 1_2:+56592063 | None:intergenic |
| GATTATTACAATTGGAAGCA+TGG | 0.471203 | 1_2:-56594969 | Msa0078910:CDS |
| AAGGATTTGTAACATTAAGA+TGG | 0.476696 | 1_2:+56592307 | None:intergenic |
| AATCTTCAAGCTTGGAATTG+TGG | 0.506810 | 1_2:-56596225 | Msa0078910:five_prime_UTR |
| GGAAGTAAAATAGACAAAAG+AGG | 0.509062 | 1_2:-56596343 | Msa0078910:five_prime_UTR |
| GACTGTGGGATTAAAATTTG+TGG | 0.513115 | 1_2:-56592453 | Msa0078910:CDS |
| TCTATACTGAAGATCGATGT+TGG | 0.520961 | 1_2:-56596097 | Msa0078910:five_prime_UTR |
| CACAAAATAAGGGTTGGAGT+TGG | 0.526971 | 1_2:+56592851 | None:intergenic |
| CCAAACTCTTTATAAATGCT+AGG | 0.536480 | 1_2:-56591937 | Msa0078910:three_prime_UTR |
| AACAGTCACTGAACTATGCA+AGG | 0.544734 | 1_2:-56592043 | Msa0078910:three_prime_UTR |
| CCAAGGTAATTGACTGGCCA+CGG | 0.545866 | 1_2:+56592907 | None:intergenic |
| TATTGTCACAAAATAAGGGT+TGG | 0.545876 | 1_2:+56592845 | None:intergenic |
| AGTTCTAGTGTGAGAAGTGA+TGG | 0.546524 | 1_2:-56592216 | Msa0078910:CDS |
| GCTGGAGTGAGGACTTGTTA+GGG | 0.547662 | 1_2:-56596065 | Msa0078910:five_prime_UTR |
| GTGGGATTAAAATTTGTGGT+AGG | 0.554847 | 1_2:-56592449 | Msa0078910:CDS |
| GAGGATTTGTGAATGAGGGT+TGG | 0.556056 | 1_2:+56596258 | None:intergenic |
| TGTGGAGTTCTCAGTTGGTG+TGG | 0.558094 | 1_2:-56592337 | Msa0078910:CDS |
| TCTGCCATCCAAGACGCAAA+AGG | 0.563451 | 1_2:+56592017 | None:intergenic |
| TAAATTCTGGTCATGTGGCA+GGG | 0.564411 | 1_2:-56591825 | Msa0078910:three_prime_UTR |
| TGGATTTACTAGCCGTCATG+TGG | 0.567046 | 1_2:-56592355 | Msa0078910:CDS |
| CGTCATGTGGAGTTCTCAGT+TGG | 0.570564 | 1_2:-56592342 | Msa0078910:CDS |
| TTCAAGCTTGGAATTGTGGT+AGG | 0.571434 | 1_2:-56596221 | Msa0078910:five_prime_UTR |
| TGTATCGAAATGTCGAAGGT+GGG | 0.578902 | 1_2:-56592257 | Msa0078910:CDS |
| ATGTTGGCTGGATTGACTGT+GGG | 0.579163 | 1_2:-56592467 | Msa0078910:CDS |
| CGCAAAACATGTAATAGCCA+AGG | 0.581608 | 1_2:+56592890 | None:intergenic |
| GTACCTAGCATTCATAGTCG+AGG | 0.584429 | 1_2:+56591867 | None:intergenic |
| GTGGAGTTCTCAGTTGGTGT+GGG | 0.586474 | 1_2:-56592336 | Msa0078910:CDS |
| TAATAGCCAAGGTAATTGAC+TGG | 0.587435 | 1_2:+56592901 | None:intergenic |
| TACCTAGCATTCATAGTCGA+GGG | 0.587805 | 1_2:+56591868 | None:intergenic |
| AATGGAGGATTTGTGAATGA+GGG | 0.589664 | 1_2:+56596254 | None:intergenic |
| GGAATTGTGGTAGGAAACAA+AGG | 0.592878 | 1_2:-56596212 | Msa0078910:intron |
| TCATTTAAATTCTGGTCATG+TGG | 0.596179 | 1_2:-56591830 | Msa0078910:three_prime_UTR |
| AGTATTTGGGGACAAGTCAA+AGG | 0.598507 | 1_2:+56592419 | None:intergenic |
| TTGTATCGAAATGTCGAAGG+TGG | 0.605346 | 1_2:-56592258 | Msa0078910:CDS |
| GTATCGAAATGTCGAAGGTG+GGG | 0.613038 | 1_2:-56592256 | Msa0078910:CDS |
| CCGTGGCCAGTCAATTACCT+TGG | 0.622249 | 1_2:-56592907 | Msa0078910:CDS |
| AACCCTCGACTATGAATGCT+AGG | 0.624160 | 1_2:-56591870 | Msa0078910:three_prime_UTR |
| AGCTGCATACTGAGTATTTG+GGG | 0.625221 | 1_2:+56592407 | None:intergenic |
| GATGTTGGCTGGATTGACTG+TGG | 0.643349 | 1_2:-56592468 | Msa0078910:CDS |
| ACAGTCACTGAACTATGCAA+GGG | 0.648853 | 1_2:-56592042 | Msa0078910:three_prime_UTR |
| CAACTGAGAACTCCACATGA+CGG | 0.656770 | 1_2:+56592343 | None:intergenic |
| TGGGTGGTTTGAGATTGACA+TGG | 0.669003 | 1_2:-56592196 | Msa0078910:CDS |
| CTAGTGTGAGAAGTGATGGG+TGG | 0.675216 | 1_2:-56592212 | Msa0078910:CDS |
| GGTTGTTATAAGCTGGAGTG+AGG | 0.675611 | 1_2:-56596076 | Msa0078910:five_prime_UTR |
| CAGTCACTGAACTATGCAAG+GGG | 0.676500 | 1_2:-56592041 | Msa0078910:three_prime_UTR |
| GTTCTAGTGTGAGAAGTGAT+GGG | 0.684808 | 1_2:-56592215 | Msa0078910:CDS |
| TGTTTGTATCGAAATGTCGA+AGG | 0.701181 | 1_2:-56592261 | Msa0078910:CDS |
| GGGTGGTTTGAGATTGACAT+GGG | 0.709161 | 1_2:-56592195 | Msa0078910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTTTTTTTATATAA+AGG | - | chr1_2:56593475-56593494 | Msa0078910:intron | 0.0% |
| !! | TATTATGCAAGAAAAAAAAA+AGG | - | chr1_2:56592290-56592309 | Msa0078910:CDS | 15.0% |
| !! | AACACTAAATTCTTATATTT+GGG | + | chr1_2:56592845-56592864 | None:intergenic | 15.0% |
| !! | AAACACTAAATTCTTATATT+TGG | + | chr1_2:56592846-56592865 | None:intergenic | 15.0% |
| !! | TGTTAACAATTTATAATTCA+AGG | + | chr1_2:56592911-56592930 | None:intergenic | 15.0% |
| !! | ATAAAAAAAAAATTAAGCAC+CGG | + | chr1_2:56593471-56593490 | None:intergenic | 15.0% |
| !!! | ATATTTGAAACTAAATTAAG+TGG | + | chr1_2:56594899-56594918 | None:intergenic | 15.0% |
| !!! | TTTAAAAAGTAAAAACGTTT+TGG | + | chr1_2:56594966-56594985 | None:intergenic | 15.0% |
| !! | ATAATAAAATGTTGAAAAGT+TGG | + | chr1_2:56596218-56596237 | None:intergenic | 15.0% |
| !! | TTAAATGACTAGAATAAATT+TGG | + | chr1_2:56596344-56596363 | None:intergenic | 15.0% |
| !! | CTTATTAAATTTGGGTAAAA+GGG | + | chr1_2:56592049-56592068 | None:intergenic | 20.0% |
| !! | GCAAAAAGCTTATTAAATTT+GGG | + | chr1_2:56592057-56592076 | None:intergenic | 20.0% |
| !! | TGCAAAAAGCTTATTAAATT+TGG | + | chr1_2:56592058-56592077 | None:intergenic | 20.0% |
| !!! | TTTTGACTATAGTTTAATCA+TGG | - | chr1_2:56592359-56592378 | Msa0078910:CDS | 20.0% |
| !! | TTTGACTATAGTTTAATCAT+GGG | - | chr1_2:56592360-56592379 | Msa0078910:CDS | 20.0% |
| !! | TAAACTTACTTAGTAGATTA+GGG | + | chr1_2:56592686-56592705 | None:intergenic | 20.0% |
| !! | ATAAACTTACTTAGTAGATT+AGG | + | chr1_2:56592687-56592706 | None:intergenic | 20.0% |
| !!! | GTTTTAAATACAATGTGATT+GGG | - | chr1_2:56592960-56592979 | Msa0078910:intron | 20.0% |
| !! | GACATGTAAATTAAATTCAA+TGG | - | chr1_2:56593053-56593072 | Msa0078910:intron | 20.0% |
| !! | CCAATTGTAATAATCATAAT+TGG | + | chr1_2:56593212-56593231 | None:intergenic | 20.0% |
| !! | CCAATTATGATTATTACAAT+TGG | - | chr1_2:56593209-56593228 | Msa0078910:intron | 20.0% |
| !!! | TAATTTTATCAAGACATGTT+GGG | + | chr1_2:56593399-56593418 | None:intergenic | 20.0% |
| !!! | TTAATTTTATCAAGACATGT+TGG | + | chr1_2:56593400-56593419 | None:intergenic | 20.0% |
| !!! | TTCCATTACAAATTTAGTTT+AGG | + | chr1_2:56593665-56593684 | None:intergenic | 20.0% |
| !!! | ATAAATTTAGCATTGACATA+AGG | + | chr1_2:56594682-56594701 | None:intergenic | 20.0% |
| !! | GCTAAATTTATAATAGCTTA+CGG | - | chr1_2:56594691-56594710 | Msa0078910:intron | 20.0% |
| !! | TTGATATTGTCACAAAATAA+GGG | + | chr1_2:56595348-56595367 | None:intergenic | 20.0% |
| !! | AAGATTATAATATAGGAACT+GGG | + | chr1_2:56595644-56595663 | None:intergenic | 20.0% |
| !! | AAAGATTATAATATAGGAAC+TGG | + | chr1_2:56595645-56595664 | None:intergenic | 20.0% |
| !! | AGTTGCAAAGATTATAATAT+AGG | + | chr1_2:56595651-56595670 | None:intergenic | 20.0% |
| !!! | TTTTTGGAAGTATGATAATA+AGG | + | chr1_2:56595901-56595920 | None:intergenic | 20.0% |
| !!! | GAATTTGCTATTTAATGATT+TGG | - | chr1_2:56596293-56596312 | Msa0078910:five_prime_UTR | 20.0% |
| !! | TATTCTAGTCATTTAAATTC+TGG | - | chr1_2:56596348-56596367 | Msa0078910:five_prime_UTR | 20.0% |
| ! | GCTTATTAAATTTGGGTAAA+AGG | + | chr1_2:56592050-56592069 | None:intergenic | 25.0% |
| !! | AATTAGAAGTACAAGAATGT+TGG | - | chr1_2:56592258-56592277 | Msa0078910:CDS | 25.0% |
| ! | TCCATACATAGATTTAGTAT+TGG | - | chr1_2:56592546-56592565 | Msa0078910:intron | 25.0% |
| ! | CCATACATAGATTTAGTATT+GGG | - | chr1_2:56592547-56592566 | Msa0078910:intron | 25.0% |
| ! | CATACATAGATTTAGTATTG+GGG | - | chr1_2:56592548-56592567 | Msa0078910:intron | 25.0% |
| ! | TCACAAGAGAAATTCATAAT+GGG | + | chr1_2:56592631-56592650 | None:intergenic | 25.0% |
| ! | TTCACAAGAGAAATTCATAA+TGG | + | chr1_2:56592632-56592651 | None:intergenic | 25.0% |
| ! | TTTGAGTAACTTTCCTTAAT+TGG | - | chr1_2:56592792-56592811 | Msa0078910:intron | 25.0% |
| ! | TTGAGTAACTTTCCTTAATT+GGG | - | chr1_2:56592793-56592812 | Msa0078910:intron | 25.0% |
| ! | TAAATTGTTAACAAGTTCAC+AGG | - | chr1_2:56592918-56592937 | Msa0078910:intron | 25.0% |
| ! | AAATTGTTAACAAGTTCACA+GGG | - | chr1_2:56592919-56592938 | Msa0078910:intron | 25.0% |
| !!! | AGGGTGTTTTAATAAATGTA+TGG | - | chr1_2:56592938-56592957 | Msa0078910:intron | 25.0% |
| !!! | GGTTTTAAATACAATGTGAT+TGG | - | chr1_2:56592959-56592978 | Msa0078910:intron | 25.0% |
| ! | GTAAATTAAATTCAATGGAC+TGG | - | chr1_2:56593058-56593077 | Msa0078910:intron | 25.0% |
| ! | ACCAGTTAATAAAAATTGTG+AGG | - | chr1_2:56593247-56593266 | Msa0078910:intron | 25.0% |
| ! | ATAAGGAAACAATACTTTAC+CGG | + | chr1_2:56593278-56593297 | None:intergenic | 25.0% |
| !! | TACAAATTTAGTTTAGGTGA+TGG | + | chr1_2:56593659-56593678 | None:intergenic | 25.0% |
| ! | CACCTAAACTAAATTTGTAA+TGG | - | chr1_2:56593660-56593679 | Msa0078910:intron | 25.0% |
| ! | GAAGACTTATAAGAATTGTT+AGG | + | chr1_2:56594004-56594023 | None:intergenic | 25.0% |
| ! | GAAGACTTATAAGAATTGTT+AGG | + | chr1_2:56594004-56594023 | None:intergenic | 25.0% |
| ! | TTGAAACTAAATTAAGTGGA+AGG | + | chr1_2:56594895-56594914 | None:intergenic | 25.0% |
| !! | AGAAATTTGAAATGCACAAT+TGG | - | chr1_2:56595069-56595088 | Msa0078910:intron | 25.0% |
| !! | AATGAAACCATGTTTTCTTT+AGG | - | chr1_2:56595179-56595198 | Msa0078910:intron | 25.0% |
| ! | GTAAAATCCTAAAGAAAACA+TGG | + | chr1_2:56595189-56595208 | None:intergenic | 25.0% |
| !!! | TTAGGATTTTACTTTTGTCA+TGG | - | chr1_2:56595197-56595216 | Msa0078910:intron | 25.0% |
| ! | CTTGATATTGTCACAAAATA+AGG | + | chr1_2:56595349-56595368 | None:intergenic | 25.0% |
| ! | TAAGTTAGATATGCTGTTAT+AGG | + | chr1_2:56595464-56595483 | None:intergenic | 25.0% |
| ! | GTGATTCATTAAATGACAAA+CGG | + | chr1_2:56595608-56595627 | None:intergenic | 25.0% |
| !!! | CAACTTTTTTGTACTACTTT+TGG | - | chr1_2:56595666-56595685 | Msa0078910:intron | 25.0% |
| !!! | TTTTTGTACTACTTTTGGAT+AGG | - | chr1_2:56595671-56595690 | Msa0078910:intron | 25.0% |
| ! | AAGGATTTGTAACATTAAGA+TGG | + | chr1_2:56595882-56595901 | None:intergenic | 25.0% |
| !!! | AGTCAAGATGAATGTTTTTA+TGG | - | chr1_2:56596044-56596063 | Msa0078910:five_prime_UTR | 25.0% |
| !!! | TGAATGTTTTTATGGAGATA+AGG | - | chr1_2:56596052-56596071 | Msa0078910:five_prime_UTR | 25.0% |
| !!! | GAATGTTTTTATGGAGATAA+GGG | - | chr1_2:56596053-56596072 | Msa0078910:five_prime_UTR | 25.0% |
| ! | ATTTTACTTCCACTAATCAG+TGG | + | chr1_2:56591834-56591853 | None:intergenic | 30.0% |
| GGAAGTAAAATAGACAAAAG+AGG | - | chr1_2:56591843-56591862 | Msa0078910:three_prime_UTR | 30.0% | |
| TTGAAGATTGACAAAAATGG+AGG | + | chr1_2:56591950-56591969 | None:intergenic | 30.0% | |
| AGCTTGAAGATTGACAAAAA+TGG | + | chr1_2:56591953-56591972 | None:intergenic | 30.0% | |
| ! | TTTTTGTCAATCTTCAAGCT+TGG | - | chr1_2:56591953-56591972 | Msa0078910:three_prime_UTR | 30.0% |
| TAAATTTGGGTAAAAGGGTT+TGG | + | chr1_2:56592044-56592063 | None:intergenic | 30.0% | |
| ! | ATTTAGAGTTGAACATGAGA+AGG | - | chr1_2:56592407-56592426 | Msa0078910:CDS | 30.0% |
| TGATAAGTTAACCTAATCCT+TGG | - | chr1_2:56592456-56592475 | Msa0078910:CDS | 30.0% | |
| ATGTATGGAATTGTCATACA+TGG | + | chr1_2:56592535-56592554 | None:intergenic | 30.0% | |
| CCCAATACTAAATCTATGTA+TGG | + | chr1_2:56592550-56592569 | None:intergenic | 30.0% | |
| GAGACAAATAAGAGAAATGT+AGG | - | chr1_2:56592603-56592622 | Msa0078910:intron | 30.0% | |
| TACCTCTTGTTAGTTGAATT+AGG | - | chr1_2:56592736-56592755 | Msa0078910:intron | 30.0% | |
| TTCCTAATTCAACTAACAAG+AGG | + | chr1_2:56592741-56592760 | None:intergenic | 30.0% | |
| TACTACAATCAACAACAATG+CGG | + | chr1_2:56593011-56593030 | None:intergenic | 30.0% | |
| !! | TAAATTCAATGGACTGGATA+TGG | - | chr1_2:56593064-56593083 | Msa0078910:intron | 30.0% |
| !! | AAATTCAATGGACTGGATAT+GGG | - | chr1_2:56593065-56593084 | Msa0078910:intron | 30.0% |
| GTAAACACACATATGAAACT+AGG | + | chr1_2:56593135-56593154 | None:intergenic | 30.0% | |
| TTGTACTAATCACAATCAGA+TGG | + | chr1_2:56593185-56593204 | None:intergenic | 30.0% | |
| GATTATTACAATTGGAAGCA+TGG | - | chr1_2:56593217-56593236 | Msa0078910:intron | 30.0% | |
| ! | GCCTCACAATTTTTATTAAC+TGG | + | chr1_2:56593251-56593270 | None:intergenic | 30.0% |
| TAGAAAACTTAAAGCTAACC+TGG | + | chr1_2:56593323-56593342 | None:intergenic | 30.0% | |
| TCAAGAAAACAATGAAAGAC+AGG | - | chr1_2:56593499-56593518 | Msa0078910:intron | 30.0% | |
| ! | TAGAAGTTTCTTTGCCTTTT+AGG | + | chr1_2:56593574-56593593 | None:intergenic | 30.0% |
| ! | AACAAGATGCATCTTCTTTT+CGG | + | chr1_2:56593968-56593987 | None:intergenic | 30.0% |
| TTGTAGTCTTCATCTTGATA+CGG | - | chr1_2:56595032-56595051 | Msa0078910:intron | 30.0% | |
| ATACTAGTAAGCTTCTACAT+AGG | + | chr1_2:56595125-56595144 | None:intergenic | 30.0% | |
| TATTGTCACAAAATAAGGGT+TGG | + | chr1_2:56595344-56595363 | None:intergenic | 30.0% | |
| CTTGAAATACTTCAGTTGTT+TGG | - | chr1_2:56595516-56595535 | Msa0078910:intron | 30.0% | |
| ! | GTTCGTTGACTAAAAATTTG+AGG | + | chr1_2:56595548-56595567 | None:intergenic | 30.0% |
| GTAGGATAAATTAACAGTAC+AGG | + | chr1_2:56595570-56595589 | None:intergenic | 30.0% | |
| ! | TCGATACAAACAGACATTTT+TGG | + | chr1_2:56595917-56595936 | None:intergenic | 30.0% |
| TACTTGAAGGAATAGAAGTT+AGG | - | chr1_2:56596100-56596119 | Msa0078910:five_prime_UTR | 30.0% | |
| GTTGCTTAATTGTCTTACTT+AGG | + | chr1_2:56596126-56596145 | None:intergenic | 30.0% | |
| CCTAGCATTTATAAAGAGTT+TGG | + | chr1_2:56596252-56596271 | None:intergenic | 30.0% | |
| CCAAACTCTTTATAAATGCT+AGG | - | chr1_2:56596249-56596268 | Msa0078910:five_prime_UTR | 30.0% | |
| TCATTTAAATTCTGGTCATG+TGG | - | chr1_2:56596356-56596375 | Msa0078910:five_prime_UTR | 30.0% | |
| AATGGAGGATTTGTGAATGA+GGG | + | chr1_2:56591935-56591954 | None:intergenic | 35.0% | |
| AAATGGAGGATTTGTGAATG+AGG | + | chr1_2:56591936-56591955 | None:intergenic | 35.0% | |
| AATCTTCAAGCTTGGAATTG+TGG | - | chr1_2:56591961-56591980 | Msa0078910:three_prime_UTR | 35.0% | |
| TGGTAGGAAACAAAGGTAAT+TGG | - | chr1_2:56591981-56592000 | Msa0078910:three_prime_UTR | 35.0% | |
| TCTATACTGAAGATCGATGT+TGG | - | chr1_2:56592089-56592108 | Msa0078910:CDS | 35.0% | |
| CAACTGGAAATTTCTCTTTG+AGG | - | chr1_2:56592195-56592214 | Msa0078910:CDS | 35.0% | |
| !! | TGGAAATTTCTCTTTGAGGT+GGG | - | chr1_2:56592199-56592218 | Msa0078910:CDS | 35.0% |
| !!! | CAAGTTGATGATGCTTTTGA+TGG | - | chr1_2:56592490-56592509 | Msa0078910:CDS | 35.0% |
| TTCCTTAATTGGGCTGAAAT+TGG | - | chr1_2:56592803-56592822 | Msa0078910:intron | 35.0% | |
| ACTACAATCAACAACAATGC+GGG | + | chr1_2:56593010-56593029 | None:intergenic | 35.0% | |
| CTGATTGTGATTAGTACAAC+TGG | - | chr1_2:56593186-56593205 | Msa0078910:intron | 35.0% | |
| TAAAAATTGTGAGGCAGATC+CGG | - | chr1_2:56593256-56593275 | Msa0078910:intron | 35.0% | |
| ! | GGCATAAAGCGTTAGATATA+AGG | + | chr1_2:56593295-56593314 | None:intergenic | 35.0% |
| ! | AAGACATGTTGGGTTGTAAT+AGG | + | chr1_2:56593389-56593408 | None:intergenic | 35.0% |
| AAAACAATGAAAGACAGGAG+AGG | - | chr1_2:56593504-56593523 | Msa0078910:intron | 35.0% | |
| AAACAATGAAAGACAGGAGA+GGG | - | chr1_2:56593505-56593524 | Msa0078910:intron | 35.0% | |
| GTGTGTTCTCTCTTTGTATA+GGG | + | chr1_2:56593531-56593550 | None:intergenic | 35.0% | |
| TGTGTGTTCTCTCTTTGTAT+AGG | + | chr1_2:56593532-56593551 | None:intergenic | 35.0% | |
| AGAAACCTAAACTGCTAAAC+AGG | - | chr1_2:56593625-56593644 | Msa0078910:intron | 35.0% | |
| CATTTCCTGTTTAGCAGTTT+AGG | + | chr1_2:56593633-56593652 | None:intergenic | 35.0% | |
| ! | AACAAGATGCGTCTTCTTTT+CGG | + | chr1_2:56594447-56594466 | None:intergenic | 35.0% |
| AAGACGCATCTTGTTGATAT+GGG | - | chr1_2:56594452-56594471 | Msa0078910:intron | 35.0% | |
| ! | ACTACTGGACAATTTCTAGA+CGG | - | chr1_2:56595009-56595028 | Msa0078910:intron | 35.0% |
| ! | TTTGAAATGCACAATTGGCT+AGG | - | chr1_2:56595074-56595093 | Msa0078910:intron | 35.0% |
| TTGAAATGCACAATTGGCTA+GGG | - | chr1_2:56595075-56595094 | Msa0078910:intron | 35.0% | |
| AACTTCATCCTTACACTATC+AGG | - | chr1_2:56595099-56595118 | Msa0078910:intron | 35.0% | |
| TAGAAGCTTACTAGTATGTG+TGG | - | chr1_2:56595128-56595147 | Msa0078910:intron | 35.0% | |
| ACTTCTGACACTAGATTTCT+GGG | + | chr1_2:56595226-56595245 | None:intergenic | 35.0% | |
| AACTTCTGACACTAGATTTC+TGG | + | chr1_2:56595227-56595246 | None:intergenic | 35.0% | |
| TAATAGCCAAGGTAATTGAC+TGG | + | chr1_2:56595288-56595307 | None:intergenic | 35.0% | |
| TCACTTTCTCATGATAAGTG+TGG | + | chr1_2:56595387-56595406 | None:intergenic | 35.0% | |
| ACACTTATCATGAGAAAGTG+AGG | - | chr1_2:56595386-56595405 | Msa0078910:intron | 35.0% | |
| TTTACCTTCTCCTCACTTAA+AGG | + | chr1_2:56595431-56595450 | None:intergenic | 35.0% | |
| GACAAACGGAGAATCTATAT+AGG | + | chr1_2:56595594-56595613 | None:intergenic | 35.0% | |
| GACTGTGGGATTAAAATTTG+TGG | - | chr1_2:56595733-56595752 | Msa0078910:intron | 35.0% | |
| GTGGGATTAAAATTTGTGGT+AGG | - | chr1_2:56595737-56595756 | Msa0078910:intron | 35.0% | |
| AAGCTGCATACTGAGTATTT+GGG | + | chr1_2:56595783-56595802 | None:intergenic | 35.0% | |
| TAAGCTGCATACTGAGTATT+TGG | + | chr1_2:56595784-56595803 | None:intergenic | 35.0% | |
| TTCAAGGTGATTGATGTCAT+TGG | - | chr1_2:56595811-56595830 | Msa0078910:intron | 35.0% | |
| TGTTTGTATCGAAATGTCGA+AGG | - | chr1_2:56595925-56595944 | Msa0078910:intron | 35.0% | |
| ! | GTTTTTATGGAGATAAGGGA+TGG | - | chr1_2:56596057-56596076 | Msa0078910:five_prime_UTR | 35.0% |
| TTCAAGCTTGGAATTGTGGT+AGG | - | chr1_2:56591965-56591984 | Msa0078910:three_prime_UTR | 40.0% | |
| GGAATTGTGGTAGGAAACAA+AGG | - | chr1_2:56591974-56591993 | Msa0078910:three_prime_UTR | 40.0% | |
| CGAAAATTGAGGGAAAAGAG+AGG | + | chr1_2:56592020-56592039 | None:intergenic | 40.0% | |
| AGGGTTTGGACGAAAATTGA+GGG | + | chr1_2:56592030-56592049 | None:intergenic | 40.0% | |
| AAGGGTTTGGACGAAAATTG+AGG | + | chr1_2:56592031-56592050 | None:intergenic | 40.0% | |
| ! | CGATGTTGGTTGTTATAAGC+TGG | - | chr1_2:56592103-56592122 | Msa0078910:CDS | 40.0% |
| ! | CTGGAAATTTCTCTTTGAGG+TGG | - | chr1_2:56592198-56592217 | Msa0078910:CDS | 40.0% |
| ATCATGACAAGTCGCTTACA+GGG | + | chr1_2:56592440-56592459 | None:intergenic | 40.0% | |
| TATCATGACAAGTCGCTTAC+AGG | + | chr1_2:56592441-56592460 | None:intergenic | 40.0% | |
| AACCTAATCCTTGGAGTTGA+AGG | - | chr1_2:56592465-56592484 | Msa0078910:CDS | 40.0% | |
| AACCTTCAACTCCAAGGATT+AGG | + | chr1_2:56592470-56592489 | None:intergenic | 40.0% | |
| AACTTGAACCTTCAACTCCA+AGG | + | chr1_2:56592476-56592495 | None:intergenic | 40.0% | |
| TGCCAATTTCAGCCCAATTA+AGG | + | chr1_2:56592808-56592827 | None:intergenic | 40.0% | |
| CTACAATCAACAACAATGCG+GGG | + | chr1_2:56593009-56593028 | None:intergenic | 40.0% | |
| CTTAAAGCTAACCTGGAATC+TGG | + | chr1_2:56593316-56593335 | None:intergenic | 40.0% | |
| AAGCCAGAACTACTCCTAAA+AGG | - | chr1_2:56593557-56593576 | Msa0078910:intron | 40.0% | |
| !! | TTGCCTTTTAGGAGTAGTTC+TGG | + | chr1_2:56593563-56593582 | None:intergenic | 40.0% |
| !! | TAACATCCCAGACTGCTTTT+AGG | - | chr1_2:56593790-56593809 | Msa0078910:intron | 40.0% |
| !! | TGTTGGTTTGTAGGGTTAGT+CGG | + | chr1_2:56593820-56593839 | None:intergenic | 40.0% |
| !! | AAGACTCGTGTTGGTTTGTA+GGG | + | chr1_2:56593828-56593847 | None:intergenic | 40.0% |
| !! | AAAGACTCGTGTTGGTTTGT+AGG | + | chr1_2:56593829-56593848 | None:intergenic | 40.0% |
| GCTTAACTGTGGAGTTCTTA+TGG | - | chr1_2:56593933-56593952 | Msa0078910:intron | 40.0% | |
| CGAATCACATCGAAATGAGA+GGG | + | chr1_2:56594066-56594085 | None:intergenic | 40.0% | |
| CCTCTCATTTCGATGTGATT+CGG | - | chr1_2:56594064-56594083 | Msa0078910:intron | 40.0% | |
| ! | AACCTTTTGTATCCAACTGG+CGG | - | chr1_2:56594143-56594162 | Msa0078910:intron | 40.0% |
| ! | CAGTCTGGGATGTTACAAAA+TGG | + | chr1_2:56594264-56594283 | None:intergenic | 40.0% |
| !! | TAACATCCCAGACTGCTTTT+AGG | - | chr1_2:56593790-56593809 | Msa0078910:intron | 40.0% |
| !! | AAAGACTCGTGTTGGTTTGT+GGG | + | chr1_2:56593829-56593848 | None:intergenic | 40.0% |
| !! | AAAAGACTCGTGTTGGTTTG+TGG | + | chr1_2:56593830-56593849 | None:intergenic | 40.0% |
| GCTTAACTGTGGAGTTCTTA+TGG | - | chr1_2:56593933-56593952 | Msa0078910:intron | 40.0% | |
| GAAGACGCATCTTGTTGATA+TGG | - | chr1_2:56594451-56594470 | Msa0078910:intron | 40.0% | |
| CGAATCACATCGAAATGAGA+GGG | + | chr1_2:56594066-56594085 | None:intergenic | 40.0% | |
| CCTCTCATTTCGATGTGATT+CGG | - | chr1_2:56594064-56594083 | Msa0078910:intron | 40.0% | |
| TTCCAAGTCCTTCATCATTC+AGG | - | chr1_2:56594797-56594816 | Msa0078910:intron | 40.0% | |
| CAACTTGAGTATAGTGAGCA+TGG | + | chr1_2:56594846-56594865 | None:intergenic | 40.0% | |
| GTGGAAGGAATGTCAGAAAA+TGG | + | chr1_2:56594880-56594899 | None:intergenic | 40.0% | |
| TGTGACGAGTAGAATACTAC+TGG | - | chr1_2:56594994-56595013 | Msa0078910:intron | 40.0% | |
| ! | TACATAGGCCTGATAGTGTA+AGG | + | chr1_2:56595110-56595129 | None:intergenic | 40.0% |
| CGCAAAACATGTAATAGCCA+AGG | + | chr1_2:56595299-56595318 | None:intergenic | 40.0% | |
| CACAAAATAAGGGTTGGAGT+TGG | + | chr1_2:56595338-56595357 | None:intergenic | 40.0% | |
| AAGTGAGGCATGTAGAAAAG+TGG | - | chr1_2:56595401-56595420 | Msa0078910:intron | 40.0% | |
| CGGAGAATCTATATAGGTGT+AGG | + | chr1_2:56595588-56595607 | None:intergenic | 40.0% | |
| AGTATTTGGGGACAAGTCAA+AGG | + | chr1_2:56595770-56595789 | None:intergenic | 40.0% | |
| AGCTGCATACTGAGTATTTG+GGG | + | chr1_2:56595782-56595801 | None:intergenic | 40.0% | |
| TGCAGCTTATCTTGTGTTCA+AGG | - | chr1_2:56595795-56595814 | Msa0078910:intron | 40.0% | |
| TTGTATCGAAATGTCGAAGG+TGG | - | chr1_2:56595928-56595947 | Msa0078910:intron | 40.0% | |
| TGTATCGAAATGTCGAAGGT+GGG | - | chr1_2:56595929-56595948 | Msa0078910:intron | 40.0% | |
| ! | AGTTCTAGTGTGAGAAGTGA+TGG | - | chr1_2:56595970-56595989 | Msa0078910:intron | 40.0% |
| GTTCTAGTGTGAGAAGTGAT+GGG | - | chr1_2:56595971-56595990 | Msa0078910:intron | 40.0% | |
| TCATCTTGACTTCAGCTTCT+AGG | + | chr1_2:56596035-56596054 | None:intergenic | 40.0% | |
| AACACACGTCTCTTACTTGA+AGG | - | chr1_2:56596087-56596106 | Msa0078910:five_prime_UTR | 40.0% | |
| AACAGTCACTGAACTATGCA+AGG | - | chr1_2:56596143-56596162 | Msa0078910:intron | 40.0% | |
| ACAGTCACTGAACTATGCAA+GGG | - | chr1_2:56596144-56596163 | Msa0078910:intron | 40.0% | |
| TACCTAGCATTCATAGTCGA+GGG | + | chr1_2:56596321-56596340 | None:intergenic | 40.0% | |
| TTAAATTCTGGTCATGTGGC+AGG | - | chr1_2:56596360-56596379 | Msa0078910:five_prime_UTR | 40.0% | |
| TAAATTCTGGTCATGTGGCA+GGG | - | chr1_2:56596361-56596380 | Msa0078910:five_prime_UTR | 40.0% | |
| GAGGATTTGTGAATGAGGGT+TGG | + | chr1_2:56591931-56591950 | None:intergenic | 45.0% | |
| GGTTGTTATAAGCTGGAGTG+AGG | - | chr1_2:56592110-56592129 | Msa0078910:CDS | 45.0% | |
| GTTAGGGAGCAAAGAAGCTT+TGG | - | chr1_2:56592137-56592156 | Msa0078910:CDS | 45.0% | |
| GGAGAAGACAGAGAGATTTC+TGG | - | chr1_2:56592158-56592177 | Msa0078910:CDS | 45.0% | |
| GGACAAACTACTGCATCAAC+TGG | - | chr1_2:56592179-56592198 | Msa0078910:CDS | 45.0% | |
| ! | TTTGAGGTGGGTTCTCTTCT+AGG | - | chr1_2:56592211-56592230 | Msa0078910:CDS | 45.0% |
| TCATGACAAGTCGCTTACAG+GGG | + | chr1_2:56592439-56592458 | None:intergenic | 45.0% | |
| AACGCTTTATGCCAGATTCC+AGG | - | chr1_2:56593302-56593321 | Msa0078910:intron | 45.0% | |
| !! | TTAAGCACCGGAACTCATCA+GGG | + | chr1_2:56593459-56593478 | None:intergenic | 45.0% |
| !! | ATTAAGCACCGGAACTCATC+AGG | + | chr1_2:56593460-56593479 | None:intergenic | 45.0% |
| ! | TGTTACAGTATGCTGACTGG+TGG | + | chr1_2:56593775-56593794 | None:intergenic | 45.0% |
| GGATGTTACAGTATGCTGAC+TGG | + | chr1_2:56593778-56593797 | None:intergenic | 45.0% | |
| GGCAATCCTAAAAGCAGTCT+GGG | + | chr1_2:56593799-56593818 | None:intergenic | 45.0% | |
| CATGCTGAAAAGACTCGTGT+TGG | + | chr1_2:56593837-56593856 | None:intergenic | 45.0% | |
| GCTTGGAGTAGTACTAGGAT+GGG | + | chr1_2:56593906-56593925 | None:intergenic | 45.0% | |
| GTATGGGACTACATGGTTGA+AGG | + | chr1_2:56594026-56594045 | None:intergenic | 45.0% | |
| CATGTAGTCCCATACCTACA+CGG | - | chr1_2:56594031-56594050 | Msa0078910:intron | 45.0% | |
| ACATCGAAATGAGAGGGATC+CGG | + | chr1_2:56594060-56594079 | None:intergenic | 45.0% | |
| CCGAATCACATCGAAATGAG+AGG | + | chr1_2:56594067-56594086 | None:intergenic | 45.0% | |
| TTCGGTTCCTCTTACTAACG+TGG | - | chr1_2:56594082-56594101 | Msa0078910:intron | 45.0% | |
| TCGGTTCCTCTTACTAACGT+GGG | - | chr1_2:56594083-56594102 | Msa0078910:intron | 45.0% | |
| TACAAAAGGTTCCCGCAAGT+TGG | + | chr1_2:56594134-56594153 | None:intergenic | 45.0% | |
| ! | GGGAACCTTTTGTATCCAAC+TGG | - | chr1_2:56594140-56594159 | Msa0078910:intron | 45.0% |
| ! | ACCTTTTGTATCCAACTGGC+GGG | - | chr1_2:56594144-56594163 | Msa0078910:intron | 45.0% |
| GGCAATCCTAAAAGCAGTCT+GGG | + | chr1_2:56593799-56593818 | None:intergenic | 45.0% | |
| !! | TGTTGGTTTGTGGGGTTAGT+CGG | + | chr1_2:56594299-56594318 | None:intergenic | 45.0% |
| !! | AAGACTCGTGTTGGTTTGTG+GGG | + | chr1_2:56594307-56594326 | None:intergenic | 45.0% |
| CATGCTGAAAAGACTCGTGT+TGG | + | chr1_2:56593837-56593856 | None:intergenic | 45.0% | |
| GCTTGGAGTAGTACTAGGAT+GGG | + | chr1_2:56593906-56593925 | None:intergenic | 45.0% | |
| GTATGGGACTACATGGTTGA+AGG | + | chr1_2:56594026-56594045 | None:intergenic | 45.0% | |
| CATGTAGTCCCATACCTACA+CGG | - | chr1_2:56594031-56594050 | Msa0078910:intron | 45.0% | |
| ACATCGAAATGAGAGGGATC+CGG | + | chr1_2:56594060-56594079 | None:intergenic | 45.0% | |
| CCGAATCACATCGAAATGAG+AGG | + | chr1_2:56594067-56594086 | None:intergenic | 45.0% | |
| TTCGGTTCCTCTTACTAACG+TGG | - | chr1_2:56594082-56594101 | Msa0078910:intron | 45.0% | |
| TCGGTTCCTCTTACTAACGT+GGG | - | chr1_2:56594083-56594102 | Msa0078910:intron | 45.0% | |
| AACCTTTCGTATCCAACTGG+CGG | - | chr1_2:56594622-56594641 | Msa0078910:intron | 45.0% | |
| GTCCTGAATGATGAAGGACT+TGG | + | chr1_2:56594802-56594821 | None:intergenic | 45.0% | |
| CCTGATGTCCTGAATGATGA+AGG | + | chr1_2:56594808-56594827 | None:intergenic | 45.0% | |
| CCTTCATCATTCAGGACATC+AGG | - | chr1_2:56594805-56594824 | Msa0078910:intron | 45.0% | |
| AAGTGGACGTCCTTTAAGTG+AGG | - | chr1_2:56595418-56595437 | Msa0078910:intron | 45.0% | |
| ACGTCCTTTAAGTGAGGAGA+AGG | - | chr1_2:56595424-56595443 | Msa0078910:intron | 45.0% | |
| AGTGAGGAGAAGGTAAATGC+TGG | - | chr1_2:56595434-56595453 | Msa0078910:intron | 45.0% | |
| ! | ATGTTGGCTGGATTGACTGT+GGG | - | chr1_2:56595719-56595738 | Msa0078910:intron | 45.0% |
| TGGATTTACTAGCCGTCATG+TGG | - | chr1_2:56595831-56595850 | Msa0078910:intron | 45.0% | |
| CAACTGAGAACTCCACATGA+CGG | + | chr1_2:56595846-56595865 | None:intergenic | 45.0% | |
| GTATCGAAATGTCGAAGGTG+GGG | - | chr1_2:56595930-56595949 | Msa0078910:intron | 45.0% | |
| ! | TGGGTGGTTTGAGATTGACA+TGG | - | chr1_2:56595990-56596009 | Msa0078910:intron | 45.0% |
| ! | GGGTGGTTTGAGATTGACAT+GGG | - | chr1_2:56595991-56596010 | Msa0078910:intron | 45.0% |
| ATGGGACAGTTCTTCAGTTC+AGG | - | chr1_2:56596009-56596028 | Msa0078910:five_prime_UTR | 45.0% | |
| CAGTCACTGAACTATGCAAG+GGG | - | chr1_2:56596145-56596164 | Msa0078910:intron | 45.0% | |
| AACCCTCGACTATGAATGCT+AGG | - | chr1_2:56596316-56596335 | Msa0078910:five_prime_UTR | 45.0% | |
| GTACCTAGCATTCATAGTCG+AGG | + | chr1_2:56596322-56596341 | None:intergenic | 45.0% | |
| ! | AGCTGGAGTGAGGACTTGTT+AGG | - | chr1_2:56592120-56592139 | Msa0078910:CDS | 50.0% |
| !! | GCTGGAGTGAGGACTTGTTA+GGG | - | chr1_2:56592121-56592140 | Msa0078910:CDS | 50.0% |
| AATCAACAACAATGCGGGGC+AGG | + | chr1_2:56593005-56593024 | None:intergenic | 50.0% | |
| !! | TCAATGGACTGGATATGGGC+AGG | - | chr1_2:56593069-56593088 | Msa0078910:intron | 50.0% |
| ! | ATAGCGCTTGTTGAGCCTTG+AGG | - | chr1_2:56593423-56593442 | Msa0078910:intron | 50.0% |
| GAACTCATCAGGGTCGAGAT+AGG | + | chr1_2:56593449-56593468 | None:intergenic | 50.0% | |
| ATCTCGACCCTGATGAGTTC+CGG | - | chr1_2:56593449-56593468 | Msa0078910:intron | 50.0% | |
| CGGCAATCCTAAAAGCAGTC+TGG | + | chr1_2:56593800-56593819 | None:intergenic | 50.0% | |
| GTCCTCACTCACATGCTTAC+CGG | - | chr1_2:56593861-56593880 | Msa0078910:intron | 50.0% | |
| TCCTCACTCACATGCTTACC+GGG | - | chr1_2:56593862-56593881 | Msa0078910:intron | 50.0% | |
| ATGCTTACCGGGAAACTTCC+CGG | - | chr1_2:56593873-56593892 | Msa0078910:intron | 50.0% | |
| TACTAGGATGGGTGACCTAC+CGG | + | chr1_2:56593895-56593914 | None:intergenic | 50.0% | |
| GGCTTGGAGTAGTACTAGGA+TGG | + | chr1_2:56593907-56593926 | None:intergenic | 50.0% | |
| !! | GCTTGGCTTGGAGTAGTACT+AGG | + | chr1_2:56593911-56593930 | None:intergenic | 50.0% |
| ACAGTTAAGCGTGCTTGGCT+TGG | + | chr1_2:56593923-56593942 | None:intergenic | 50.0% | |
| AAGCCAAGCACGCTTAACTG+TGG | - | chr1_2:56593922-56593941 | Msa0078910:intron | 50.0% | |
| ACTCCACAGTTAAGCGTGCT+TGG | + | chr1_2:56593928-56593947 | None:intergenic | 50.0% | |
| CGTGTAGGTATGGGACTACA+TGG | + | chr1_2:56594033-56594052 | None:intergenic | 50.0% | |
| CGGTTCCTCTTACTAACGTG+GGG | - | chr1_2:56594084-56594103 | Msa0078910:intron | 50.0% | |
| GATGACCCCACGTTAGTAAG+AGG | + | chr1_2:56594092-56594111 | None:intergenic | 50.0% | |
| CTAACGTGGGGTCATCCTTA+CGG | - | chr1_2:56594096-56594115 | Msa0078910:intron | 50.0% | |
| ATAGTGCCCGTTCCAACTTG+CGG | - | chr1_2:56594119-56594138 | Msa0078910:intron | 50.0% | |
| ! | AAGGTTCCCGCAAGTTGGAA+CGG | + | chr1_2:56594129-56594148 | None:intergenic | 50.0% |
| TCCCGCCAGTTGGATACAAA+AGG | + | chr1_2:56594148-56594167 | None:intergenic | 50.0% | |
| GATATCGAAAGCCACGTCGT+GGG | - | chr1_2:56594166-56594185 | Msa0078910:intron | 50.0% | |
| TCTCCCAGTAAGGTGTGGTT+CGG | + | chr1_2:56594227-56594246 | None:intergenic | 50.0% | |
| CGGCAATCCTAAAAGCAGTC+TGG | + | chr1_2:56593800-56593819 | None:intergenic | 50.0% | |
| GTCCTCACTCACATGCTTAC+CGG | - | chr1_2:56593861-56593880 | Msa0078910:intron | 50.0% | |
| TCCTCACTCACATGCTTACC+GGG | - | chr1_2:56593862-56593881 | Msa0078910:intron | 50.0% | |
| ATGCTTACCGGGAAACTTCC+CGG | - | chr1_2:56593873-56593892 | Msa0078910:intron | 50.0% | |
| TACTAGGATGGGTGACCTAC+CGG | + | chr1_2:56593895-56593914 | None:intergenic | 50.0% | |
| GGCTTGGAGTAGTACTAGGA+TGG | + | chr1_2:56593907-56593926 | None:intergenic | 50.0% | |
| !! | GCTTGGCTTGGAGTAGTACT+AGG | + | chr1_2:56593911-56593930 | None:intergenic | 50.0% |
| ACAGTTAAGCGTGCTTGGCT+TGG | + | chr1_2:56593923-56593942 | None:intergenic | 50.0% | |
| AAGCCAAGCACGCTTAACTG+TGG | - | chr1_2:56593922-56593941 | Msa0078910:intron | 50.0% | |
| ACTCCACAGTTAAGCGTGCT+TGG | + | chr1_2:56593928-56593947 | None:intergenic | 50.0% | |
| CGTGTAGGTATGGGACTACA+TGG | + | chr1_2:56594033-56594052 | None:intergenic | 50.0% | |
| CGGTTCCTCTTACTAACGTG+GGG | - | chr1_2:56594084-56594103 | Msa0078910:intron | 50.0% | |
| GATGACCCCACGTTAGTAAG+AGG | + | chr1_2:56594092-56594111 | None:intergenic | 50.0% | |
| CTAACGTGGGGTCATCCTTA+CGG | - | chr1_2:56594096-56594115 | Msa0078910:intron | 50.0% | |
| GGGAACCTTTCGTATCCAAC+TGG | - | chr1_2:56594619-56594638 | Msa0078910:intron | 50.0% | |
| ACCTTTCGTATCCAACTGGC+GGG | - | chr1_2:56594623-56594642 | Msa0078910:intron | 50.0% | |
| GATATCGAAAGCCACGTCGT+GGG | - | chr1_2:56594166-56594185 | Msa0078910:intron | 50.0% | |
| TATGTGTAACACCCACGACG+TGG | + | chr1_2:56594659-56594678 | None:intergenic | 50.0% | |
| ! | CCAAGGTAATTGACTGGCCA+CGG | + | chr1_2:56595282-56595301 | None:intergenic | 50.0% |
| ! | GATGTTGGCTGGATTGACTG+TGG | - | chr1_2:56595718-56595737 | Msa0078910:intron | 50.0% |
| CGTCATGTGGAGTTCTCAGT+TGG | - | chr1_2:56595844-56595863 | Msa0078910:intron | 50.0% | |
| ! | TGTGGAGTTCTCAGTTGGTG+TGG | - | chr1_2:56595849-56595868 | Msa0078910:intron | 50.0% |
| ! | GTGGAGTTCTCAGTTGGTGT+GGG | - | chr1_2:56595850-56595869 | Msa0078910:intron | 50.0% |
| ! | TTCTCAGTTGGTGTGGGAAG+TGG | - | chr1_2:56595856-56595875 | Msa0078910:intron | 50.0% |
| ! | CTAGTGTGAGAAGTGATGGG+TGG | - | chr1_2:56595974-56595993 | Msa0078910:intron | 50.0% |
| TCTGCCATCCAAGACGCAAA+AGG | + | chr1_2:56596172-56596191 | None:intergenic | 50.0% | |
| TCCCGGTAAGCATGTGAGTG+AGG | + | chr1_2:56593866-56593885 | None:intergenic | 55.0% | |
| TTACCGGGAAACTTCCCGGT+AGG | - | chr1_2:56593877-56593896 | Msa0078910:intron | 55.0% | |
| TGACCTACCGGGAAGTTTCC+CGG | + | chr1_2:56593883-56593902 | None:intergenic | 55.0% | |
| ACTAGGATGGGTGACCTACC+GGG | + | chr1_2:56593894-56593913 | None:intergenic | 55.0% | |
| TCGAAATGAGAGGGATCCGG+AGG | + | chr1_2:56594057-56594076 | None:intergenic | 55.0% | |
| TGGAACGGGCACTATCCGTA+AGG | + | chr1_2:56594114-56594133 | None:intergenic | 55.0% | |
| TAGTGCCCGTTCCAACTTGC+GGG | - | chr1_2:56594120-56594139 | Msa0078910:intron | 55.0% | |
| ! | AGGTTCCCGCAAGTTGGAAC+GGG | + | chr1_2:56594128-56594147 | None:intergenic | 55.0% |
| GCTTTCGATATCCCGCCAGT+TGG | + | chr1_2:56594158-56594177 | None:intergenic | 55.0% | |
| GGATATCGAAAGCCACGTCG+TGG | - | chr1_2:56594165-56594184 | Msa0078910:intron | 55.0% | |
| TCCCCGAACCACACCTTACT+GGG | - | chr1_2:56594221-56594240 | Msa0078910:intron | 55.0% | |
| TCCCAGTAAGGTGTGGTTCG+GGG | + | chr1_2:56594225-56594244 | None:intergenic | 55.0% | |
| CTCCCAGTAAGGTGTGGTTC+GGG | + | chr1_2:56594226-56594245 | None:intergenic | 55.0% | |
| GAACCACACCTTACTGGGAG+AGG | - | chr1_2:56594226-56594245 | Msa0078910:intron | 55.0% | |
| AGACCTCTCCCAGTAAGGTG+TGG | + | chr1_2:56594232-56594251 | None:intergenic | 55.0% | |
| CTTACTGGGAGAGGTCTGCT+CGG | - | chr1_2:56594235-56594254 | Msa0078910:intron | 55.0% | |
| TCCCGGTAAGCATGTGAGTG+AGG | + | chr1_2:56593866-56593885 | None:intergenic | 55.0% | |
| TTACCGGGAAACTTCCCGGT+AGG | - | chr1_2:56593877-56593896 | Msa0078910:intron | 55.0% | |
| TGACCTACCGGGAAGTTTCC+CGG | + | chr1_2:56593883-56593902 | None:intergenic | 55.0% | |
| ACTAGGATGGGTGACCTACC+GGG | + | chr1_2:56593894-56593913 | None:intergenic | 55.0% | |
| TCGAAATGAGAGGGATCCGG+AGG | + | chr1_2:56594057-56594076 | None:intergenic | 55.0% | |
| TGGAACGGGCACTATCCGTA+AGG | + | chr1_2:56594114-56594133 | None:intergenic | 55.0% | |
| ATAGTGCCCGTTCCAACTGG+CGG | - | chr1_2:56594598-56594617 | Msa0078910:intron | 55.0% | |
| AAGGTTCCCGCCAGTTGGAA+CGG | + | chr1_2:56594608-56594627 | None:intergenic | 55.0% | |
| TACGAAAGGTTCCCGCCAGT+TGG | + | chr1_2:56594613-56594632 | None:intergenic | 55.0% | |
| TCCCGCCAGTTGGATACGAA+AGG | + | chr1_2:56594627-56594646 | None:intergenic | 55.0% | |
| GCTTTCGATATCCCGCCAGT+TGG | + | chr1_2:56594158-56594177 | None:intergenic | 55.0% | |
| GGATATCGAAAGCCACGTCG+TGG | - | chr1_2:56594165-56594184 | Msa0078910:intron | 55.0% | |
| GTATGTGTCCTTAGCAGCCG+TGG | - | chr1_2:56595262-56595281 | Msa0078910:intron | 55.0% | |
| CCGTGGCCAGTCAATTACCT+TGG | - | chr1_2:56595279-56595298 | Msa0078910:intron | 55.0% | |
| CACGAAGCTCAGCGACTTCA+GGG | + | chr1_2:56595699-56595718 | None:intergenic | 55.0% | |
| TCACGAAGCTCAGCGACTTC+AGG | + | chr1_2:56595700-56595719 | None:intergenic | 55.0% | |
| GTCGCTGAGCTTCGTGATGT+TGG | - | chr1_2:56595703-56595722 | Msa0078910:intron | 55.0% | |
| CTGAGCTTCGTGATGTTGGC+TGG | - | chr1_2:56595707-56595726 | Msa0078910:intron | 55.0% | |
| ! | CAAGGGGTCCTTTTGCGTCT+TGG | - | chr1_2:56596161-56596180 | Msa0078910:intron | 55.0% |
| ! | GGGTCCTTTTGCGTCTTGGA+TGG | - | chr1_2:56596165-56596184 | Msa0078910:intron | 55.0% |
| CAGGGTCGAGATAGGCCTCA+AGG | + | chr1_2:56593441-56593460 | None:intergenic | 60.0% | |
| TCCCATACCTACACGGCCTC+CGG | - | chr1_2:56594038-56594057 | Msa0078910:intron | 60.0% | |
| TCCGGAGGCCGTGTAGGTAT+GGG | + | chr1_2:56594042-56594061 | None:intergenic | 60.0% | |
| ATCCGGAGGCCGTGTAGGTA+TGG | + | chr1_2:56594043-56594062 | None:intergenic | 60.0% | |
| GGCATGAAACACCCACGACG+TGG | + | chr1_2:56594180-56594199 | None:intergenic | 60.0% | |
| GTCCCCGAACCACACCTTAC+TGG | - | chr1_2:56594220-56594239 | Msa0078910:intron | 60.0% | |
| CGAGCAGACCTCTCCCAGTA+AGG | + | chr1_2:56594237-56594256 | None:intergenic | 60.0% | |
| TCCCATACCTACACGGCCTC+CGG | - | chr1_2:56594038-56594057 | Msa0078910:intron | 60.0% | |
| TCCGGAGGCCGTGTAGGTAT+GGG | + | chr1_2:56594042-56594061 | None:intergenic | 60.0% | |
| ATCCGGAGGCCGTGTAGGTA+TGG | + | chr1_2:56594043-56594062 | None:intergenic | 60.0% | |
| CGGATAGTGCCCGTTCCAAC+TGG | - | chr1_2:56594116-56594135 | Msa0078910:intron | 60.0% | |
| TAGTGCCCGTTCCAACTGGC+GGG | - | chr1_2:56594599-56594618 | Msa0078910:intron | 60.0% | |
| AGGTTCCCGCCAGTTGGAAC+GGG | + | chr1_2:56594607-56594626 | None:intergenic | 60.0% | |
| ! | TTGACTGGCCACGGCTGCTA+AGG | + | chr1_2:56595273-56595292 | None:intergenic | 60.0% |
| CGAACCAGGCGGAAGCTGGT+GGG | + | chr1_2:56594201-56594220 | None:intergenic | 65.0% | |
| ACGAACCAGGCGGAAGCTGG+TGG | + | chr1_2:56594202-56594221 | None:intergenic | 65.0% | |
| ! | TGGTTCGGGGACGAACCAGG+CGG | + | chr1_2:56594212-56594231 | None:intergenic | 65.0% |
| ! | GTGTGGTTCGGGGACGAACC+AGG | + | chr1_2:56594215-56594234 | None:intergenic | 65.0% |
| GAGGGATCCGGAGGCCGTGT+AGG | + | chr1_2:56594048-56594067 | None:intergenic | 70.0% | |
| CATGCCCACCAGCTTCCGCC+TGG | - | chr1_2:56594194-56594213 | Msa0078910:intron | 70.0% | |
| GGGACGAACCAGGCGGAAGC+TGG | + | chr1_2:56594205-56594224 | None:intergenic | 70.0% | |
| GAGGGATCCGGAGGCCGTGT+AGG | + | chr1_2:56594048-56594067 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 56591824 | 56596384 | 56591824 | ID=Msa0078910;Name=Msa0078910 |
| chr1_2 | mRNA | 56591824 | 56596384 | 56591824 | ID=Msa0078910-mRNA-1;Parent=Msa0078910;Name=Msa0078910-mRNA-1;_AED=0.47;_eAED=0.47;_QI=321|0.5|0.8|0.8|0|0.2|5|253|207 |
| chr1_2 | exon | 56591824 | 56592515 | 56591824 | ID=Msa0078910-mRNA-1:exon:17812;Parent=Msa0078910-mRNA-1 |
| chr1_2 | exon | 56592854 | 56592929 | 56592854 | ID=Msa0078910-mRNA-1:exon:17811;Parent=Msa0078910-mRNA-1 |
| chr1_2 | exon | 56594885 | 56595008 | 56594885 | ID=Msa0078910-mRNA-1:exon:17810;Parent=Msa0078910-mRNA-1 |
| chr1_2 | exon | 56595992 | 56596125 | 56595992 | ID=Msa0078910-mRNA-1:exon:17809;Parent=Msa0078910-mRNA-1 |
| chr1_2 | exon | 56596213 | 56596384 | 56596213 | ID=Msa0078910-mRNA-1:exon:17808;Parent=Msa0078910-mRNA-1 |
| chr1_2 | five_prime_UTR | 56596213 | 56596384 | 56596213 | ID=Msa0078910-mRNA-1:five_prime_utr;Parent=Msa0078910-mRNA-1 |
| chr1_2 | five_prime_UTR | 56595992 | 56596125 | 56595992 | ID=Msa0078910-mRNA-1:five_prime_utr;Parent=Msa0078910-mRNA-1 |
| chr1_2 | five_prime_UTR | 56594994 | 56595008 | 56594994 | ID=Msa0078910-mRNA-1:five_prime_utr;Parent=Msa0078910-mRNA-1 |
| chr1_2 | CDS | 56594885 | 56594993 | 56594885 | ID=Msa0078910-mRNA-1:cds;Parent=Msa0078910-mRNA-1 |
| chr1_2 | CDS | 56592854 | 56592929 | 56592854 | ID=Msa0078910-mRNA-1:cds;Parent=Msa0078910-mRNA-1 |
| chr1_2 | CDS | 56592077 | 56592515 | 56592077 | ID=Msa0078910-mRNA-1:cds;Parent=Msa0078910-mRNA-1 |
| chr1_2 | three_prime_UTR | 56591824 | 56592076 | 56591824 | ID=Msa0078910-mRNA-1:three_prime_utr;Parent=Msa0078910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
