Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171450 | XP_024637422.1 | 77.181 | 149 | 31 | 1 | 6 | 151 | 138 | 286 | 5.86e-73 | 230 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171450 | sp|Q9ZVQ6|P2B10_ARATH | 36.242 | 149 | 77 | 6 | 6 | 150 | 134 | 268 | 6.47e-20 | 86.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171450 | A0A396JQM2 | 77.181 | 149 | 31 | 1 | 6 | 151 | 169 | 317 | 9.06e-73 | 230 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0078910 | Msa0171450 | 0.913660 | 4.754855e-84 | -8.615850e-47 |
| Msa0171450 | Msa0580260 | 0.802511 | 5.418799e-49 | -8.615850e-47 |
| Msa0171450 | Msa1211890 | 0.805425 | 1.342965e-49 | -8.615850e-47 |
| Msa0171450 | Msa1452240 | 0.805677 | 1.189322e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171450 | MtrunA17_Chr1g0189701 | 77.181 | 149 | 31 | 1 | 6 | 151 | 169 | 317 | 1.75e-76 | 230 |
| Msa0171450 | MtrunA17_Chr1g0189711 | 56.774 | 155 | 47 | 6 | 6 | 151 | 132 | 275 | 6.72e-46 | 150 |
| Msa0171450 | MtrunA17_Chr1g0189611 | 56.579 | 152 | 44 | 6 | 6 | 151 | 130 | 265 | 1.60e-41 | 139 |
| Msa0171450 | MtrunA17_Chr1g0189821 | 56.667 | 150 | 48 | 6 | 6 | 151 | 130 | 266 | 3.53e-41 | 138 |
| Msa0171450 | MtrunA17_Chr1g0189721 | 53.947 | 152 | 51 | 6 | 6 | 151 | 127 | 265 | 1.86e-39 | 134 |
| Msa0171450 | MtrunA17_Chr1g0189751 | 52.632 | 152 | 53 | 5 | 6 | 151 | 127 | 265 | 3.24e-39 | 134 |
| Msa0171450 | MtrunA17_Chr1g0189541 | 52.000 | 150 | 52 | 6 | 6 | 151 | 51 | 184 | 2.83e-37 | 125 |
| Msa0171450 | MtrunA17_Chr1g0189621 | 52.632 | 152 | 53 | 6 | 6 | 151 | 126 | 264 | 1.71e-35 | 123 |
| Msa0171450 | MtrunA17_Chr1g0203281 | 49.375 | 160 | 53 | 6 | 6 | 151 | 127 | 272 | 3.31e-34 | 120 |
| Msa0171450 | MtrunA17_Chr1g0189671 | 45.912 | 159 | 60 | 6 | 6 | 151 | 127 | 272 | 7.77e-32 | 114 |
| Msa0171450 | MtrunA17_Chr3g0097191 | 48.344 | 151 | 59 | 6 | 6 | 151 | 131 | 267 | 9.44e-31 | 111 |
| Msa0171450 | MtrunA17_Chr7g0260801 | 47.368 | 152 | 59 | 7 | 6 | 151 | 138 | 274 | 4.00e-30 | 110 |
| Msa0171450 | MtrunA17_Chr1g0157451 | 47.742 | 155 | 66 | 8 | 6 | 151 | 135 | 283 | 5.92e-30 | 110 |
| Msa0171450 | MtrunA17_Chr1g0189641 | 46.053 | 152 | 71 | 5 | 6 | 151 | 127 | 273 | 2.60e-29 | 108 |
| Msa0171450 | MtrunA17_Chr1g0189651 | 48.630 | 146 | 57 | 6 | 6 | 151 | 52 | 179 | 9.26e-29 | 103 |
| Msa0171450 | MtrunA17_Chr3g0095261 | 50.781 | 128 | 48 | 5 | 29 | 151 | 166 | 283 | 1.01e-28 | 106 |
| Msa0171450 | MtrunA17_Chr1g0189661 | 45.806 | 155 | 69 | 8 | 6 | 151 | 130 | 278 | 1.40e-28 | 106 |
| Msa0171450 | MtrunA17_Chr3g0078331 | 39.429 | 175 | 65 | 4 | 6 | 151 | 153 | 315 | 8.35e-27 | 102 |
| Msa0171450 | MtrunA17_Chr3g0102081 | 46.154 | 117 | 48 | 3 | 2 | 115 | 19 | 123 | 1.47e-25 | 94.4 |
| Msa0171450 | MtrunA17_Chr1g0190071 | 42.683 | 164 | 63 | 7 | 6 | 151 | 131 | 281 | 7.86e-25 | 96.3 |
| Msa0171450 | MtrunA17_Chr1g0188311 | 42.361 | 144 | 49 | 4 | 7 | 128 | 22 | 153 | 1.12e-24 | 93.2 |
| Msa0171450 | MtrunA17_Chr1g0203331 | 46.429 | 140 | 46 | 5 | 6 | 128 | 112 | 239 | 1.54e-24 | 94.7 |
| Msa0171450 | MtrunA17_Chr2g0317291 | 44.667 | 150 | 62 | 6 | 6 | 148 | 77 | 212 | 2.71e-24 | 93.6 |
| Msa0171450 | MtrunA17_Chr7g0272091 | 40.373 | 161 | 72 | 6 | 6 | 151 | 132 | 283 | 1.40e-23 | 93.2 |
| Msa0171450 | MtrunA17_Chr1g0189781 | 40.789 | 152 | 71 | 5 | 6 | 151 | 135 | 273 | 1.97e-22 | 90.1 |
| Msa0171450 | MtrunA17_Chr3g0143881 | 43.089 | 123 | 53 | 3 | 29 | 151 | 2 | 107 | 3.43e-21 | 82.4 |
| Msa0171450 | MtrunA17_Chr1g0192371 | 36.943 | 157 | 79 | 5 | 6 | 151 | 134 | 281 | 4.61e-21 | 86.3 |
| Msa0171450 | MtrunA17_Chr1g0189631 | 41.346 | 104 | 52 | 2 | 29 | 123 | 2 | 105 | 4.25e-16 | 69.7 |
| Msa0171450 | MtrunA17_Chr7g0272101 | 30.612 | 147 | 88 | 3 | 6 | 151 | 124 | 257 | 1.19e-15 | 71.6 |
| Msa0171450 | MtrunA17_Chr1g0189591 | 32.558 | 172 | 85 | 7 | 6 | 151 | 140 | 306 | 6.18e-15 | 70.1 |
| Msa0171450 | MtrunA17_Chr1g0189761 | 52.727 | 55 | 26 | 0 | 97 | 151 | 40 | 94 | 2.03e-11 | 57.0 |
| Msa0171450 | MtrunA17_Chr7g0260811 | 48.485 | 66 | 30 | 1 | 5 | 70 | 103 | 164 | 8.54e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171450 | AT2G02360.1 | 36.242 | 149 | 77 | 6 | 6 | 150 | 134 | 268 | 6.58e-21 | 86.3 |
| Msa0171450 | AT2G02340.1 | 35.256 | 156 | 78 | 7 | 6 | 150 | 158 | 301 | 1.44e-13 | 66.6 |
| Msa0171450 | AT1G09155.1 | 30.864 | 162 | 92 | 5 | 6 | 151 | 123 | 280 | 2.69e-13 | 65.9 |
| Msa0171450 | AT1G80110.1 | 35.811 | 148 | 79 | 7 | 6 | 150 | 121 | 255 | 1.79e-12 | 63.2 |
| Msa0171450 | AT1G56240.1 | 30.864 | 162 | 90 | 6 | 6 | 150 | 124 | 280 | 1.81e-12 | 63.5 |
| Msa0171450 | AT2G02240.1 | 32.192 | 146 | 88 | 5 | 6 | 150 | 181 | 316 | 3.13e-12 | 63.2 |
| Msa0171450 | AT1G56250.1 | 30.675 | 163 | 91 | 6 | 6 | 151 | 124 | 281 | 1.76e-11 | 60.8 |
| Msa0171450 | AT2G02250.1 | 31.507 | 146 | 89 | 4 | 6 | 150 | 168 | 303 | 2.35e-11 | 60.5 |
Find 40 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGCTGCATACTGAGTATT+TGG | 0.174774 | 1_4:+56209870 | None:intergenic |
| TCATCTTGACTTCAGCTTCT+AGG | 0.217165 | 1_4:+56209619 | None:intergenic |
| ATAATAAAATGTTGAAAAGT+TGG | 0.334518 | 1_4:+56209436 | None:intergenic |
| TCACGAAGCTCAGCGACTTC+AGG | 0.347960 | 1_4:+56209954 | None:intergenic |
| CTGAGCTTCGTGATGTTGGC+TGG | 0.357761 | 1_4:-56209944 | Msa0171450:CDS |
| AAGCTGCATACTGAGTATTT+GGG | 0.374712 | 1_4:+56209871 | None:intergenic |
| TGCAGCTTATCTTGTGTTCA+AGG | 0.402682 | 1_4:-56209856 | Msa0171450:CDS |
| TTCAAGGTGATTGATGTCAT+TGG | 0.424874 | 1_4:-56209840 | Msa0171450:CDS |
| TACTTGAAGGAATAGAAGTT+AGG | 0.437558 | 1_4:-56209551 | Msa0171450:CDS |
| CACGAAGCTCAGCGACTTCA+GGG | 0.439334 | 1_4:+56209955 | None:intergenic |
| TTCTCAGTTGGTGTGGGAAG+TGG | 0.440820 | 1_4:-56209795 | Msa0171450:CDS |
| AACACACGTCTCTTACTTGA+AGG | 0.444343 | 1_4:-56209564 | Msa0171450:CDS |
| ATGGGACAGTTCTTCAGTTC+AGG | 0.446867 | 1_4:-56209642 | Msa0171450:CDS |
| GTCGCTGAGCTTCGTGATGT+TGG | 0.464911 | 1_4:-56209948 | Msa0171450:CDS |
| GTTGCTTAATTGTCTTACTT+AGG | 0.466051 | 1_4:+56209528 | None:intergenic |
| AAGGATTTGTAACATTAAGA+TGG | 0.476696 | 1_4:+56209772 | None:intergenic |
| GACTGTGGGATTAAAATTTG+TGG | 0.513115 | 1_4:-56209918 | Msa0171450:CDS |
| AACAGTCACTGAACTATGCA+AGG | 0.544734 | 1_4:-56209508 | Msa0171450:three_prime_UTR |
| AGTTCTAGTGTGAGAAGTGA+TGG | 0.546524 | 1_4:-56209681 | Msa0171450:CDS |
| GTGGGATTAAAATTTGTGGT+AGG | 0.554847 | 1_4:-56209914 | Msa0171450:CDS |
| TGTGGAGTTCTCAGTTGGTG+TGG | 0.558094 | 1_4:-56209802 | Msa0171450:CDS |
| TCTGCCATCCAAGACGCAAA+AGG | 0.563451 | 1_4:+56209482 | None:intergenic |
| TGGATTTACTAGCCGTCATG+TGG | 0.567046 | 1_4:-56209820 | Msa0171450:CDS |
| CGTCATGTGGAGTTCTCAGT+TGG | 0.570564 | 1_4:-56209807 | Msa0171450:CDS |
| TGTATCGAAATGTCGAAGGT+GGG | 0.578902 | 1_4:-56209722 | Msa0171450:CDS |
| ATGTTGGCTGGATTGACTGT+GGG | 0.579163 | 1_4:-56209932 | Msa0171450:CDS |
| GTGGAGTTCTCAGTTGGTGT+GGG | 0.586474 | 1_4:-56209801 | Msa0171450:CDS |
| AGTATTTGGGGACAAGTCAA+AGG | 0.598507 | 1_4:+56209884 | None:intergenic |
| TTGTATCGAAATGTCGAAGG+TGG | 0.605346 | 1_4:-56209723 | Msa0171450:CDS |
| GTATCGAAATGTCGAAGGTG+GGG | 0.613038 | 1_4:-56209721 | Msa0171450:CDS |
| AGCTGCATACTGAGTATTTG+GGG | 0.625221 | 1_4:+56209872 | None:intergenic |
| GATGTTGGCTGGATTGACTG+TGG | 0.643349 | 1_4:-56209933 | Msa0171450:CDS |
| ACAGTCACTGAACTATGCAA+GGG | 0.648853 | 1_4:-56209507 | Msa0171450:three_prime_UTR |
| CAACTGAGAACTCCACATGA+CGG | 0.656770 | 1_4:+56209808 | None:intergenic |
| TGGGTGGTTTGAGATTGACA+TGG | 0.669003 | 1_4:-56209661 | Msa0171450:CDS |
| CTAGTGTGAGAAGTGATGGG+TGG | 0.675216 | 1_4:-56209677 | Msa0171450:CDS |
| CAGTCACTGAACTATGCAAG+GGG | 0.676500 | 1_4:-56209506 | Msa0171450:three_prime_UTR |
| GTTCTAGTGTGAGAAGTGAT+GGG | 0.684808 | 1_4:-56209680 | Msa0171450:CDS |
| TGTTTGTATCGAAATGTCGA+AGG | 0.701181 | 1_4:-56209726 | Msa0171450:CDS |
| GGGTGGTTTGAGATTGACAT+GGG | 0.709161 | 1_4:-56209660 | Msa0171450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTTTTTTTATATAA+AGG | - | chr1_4:56209602-56209621 | Msa0171450:CDS | 0.0% |
| !! | ATAAAAAAAAAATTAAGCAC+CGG | + | chr1_4:56209598-56209617 | None:intergenic | 15.0% |
| !!! | ATATTTGAAACTAAATTAAG+TGG | + | chr1_4:56211026-56211045 | None:intergenic | 15.0% |
| !!! | TTTAAAAAGTAAAAACGTTT+TGG | + | chr1_4:56211093-56211112 | None:intergenic | 15.0% |
| !! | ATAATAAAATGTTGAAAAGT+TGG | + | chr1_4:56212345-56212364 | None:intergenic | 15.0% |
| !!! | TAATTTTATCAAGACATGTT+GGG | + | chr1_4:56209526-56209545 | None:intergenic | 20.0% |
| !!! | TTAATTTTATCAAGACATGT+TGG | + | chr1_4:56209527-56209546 | None:intergenic | 20.0% |
| !!! | TTCCATTACAAATTTAGTTT+AGG | + | chr1_4:56209792-56209811 | None:intergenic | 20.0% |
| !!! | ATAAATTTAGCATTGACATA+AGG | + | chr1_4:56210809-56210828 | None:intergenic | 20.0% |
| !! | GCTAAATTTATAATAGCTTA+CGG | - | chr1_4:56210818-56210837 | Msa0171450:intron | 20.0% |
| !! | TTGATATTGTCACAAAATAA+GGG | + | chr1_4:56211475-56211494 | None:intergenic | 20.0% |
| !! | AAGATTATAATATAGGAACT+GGG | + | chr1_4:56211771-56211790 | None:intergenic | 20.0% |
| !! | AAAGATTATAATATAGGAAC+TGG | + | chr1_4:56211772-56211791 | None:intergenic | 20.0% |
| !! | AGTTGCAAAGATTATAATAT+AGG | + | chr1_4:56211778-56211797 | None:intergenic | 20.0% |
| !!! | TTTTTGGAAGTATGATAATA+AGG | + | chr1_4:56212028-56212047 | None:intergenic | 20.0% |
| ! | TTTCTTGTTCTCGAATTATT+TGG | - | chr1_4:56209408-56209427 | Msa0171450:three_prime_UTR | 25.0% |
| !! | TACAAATTTAGTTTAGGTGA+TGG | + | chr1_4:56209786-56209805 | None:intergenic | 25.0% |
| ! | CACCTAAACTAAATTTGTAA+TGG | - | chr1_4:56209787-56209806 | Msa0171450:CDS | 25.0% |
| ! | GAAGACTTATAAGAATTGTT+AGG | + | chr1_4:56210131-56210150 | None:intergenic | 25.0% |
| ! | GAAGACTTATAAGAATTGTT+AGG | + | chr1_4:56210131-56210150 | None:intergenic | 25.0% |
| ! | TTGAAACTAAATTAAGTGGA+AGG | + | chr1_4:56211022-56211041 | None:intergenic | 25.0% |
| !! | AGAAATTTGAAATGCACAAT+TGG | - | chr1_4:56211196-56211215 | Msa0171450:intron | 25.0% |
| !! | AATGAAACCATGTTTTCTTT+AGG | - | chr1_4:56211306-56211325 | Msa0171450:intron | 25.0% |
| ! | GTAAAATCCTAAAGAAAACA+TGG | + | chr1_4:56211316-56211335 | None:intergenic | 25.0% |
| !!! | TTAGGATTTTACTTTTGTCA+TGG | - | chr1_4:56211324-56211343 | Msa0171450:intron | 25.0% |
| ! | CTTGATATTGTCACAAAATA+AGG | + | chr1_4:56211476-56211495 | None:intergenic | 25.0% |
| ! | TAAGTTAGATATGCTGTTAT+AGG | + | chr1_4:56211591-56211610 | None:intergenic | 25.0% |
| ! | GTGATTCATTAAATGACAAA+CGG | + | chr1_4:56211735-56211754 | None:intergenic | 25.0% |
| !!! | CAACTTTTTTGTAGTACTTT+TGG | - | chr1_4:56211793-56211812 | Msa0171450:intron | 25.0% |
| !! | TTTTTGTAGTACTTTTGGAT+AGG | - | chr1_4:56211798-56211817 | Msa0171450:intron | 25.0% |
| ! | AAGGATTTGTAACATTAAGA+TGG | + | chr1_4:56212009-56212028 | None:intergenic | 25.0% |
| !!! | AGTCAAGATGAATGTTTTTA+TGG | - | chr1_4:56212171-56212190 | Msa0171450:intron | 25.0% |
| !!! | TGAATGTTTTTATGGAGATA+AGG | - | chr1_4:56212179-56212198 | Msa0171450:intron | 25.0% |
| !!! | GAATGTTTTTATGGAGATAA+GGG | - | chr1_4:56212180-56212199 | Msa0171450:intron | 25.0% |
| ! | CTTAGCATTTATAAAGAGTT+TGG | + | chr1_4:56212379-56212398 | None:intergenic | 25.0% |
| TAGAAAACTTAAAGCTAACC+TGG | + | chr1_4:56209450-56209469 | None:intergenic | 30.0% | |
| TCAAGAAAACAATGAAAGAC+AGG | - | chr1_4:56209626-56209645 | Msa0171450:CDS | 30.0% | |
| ! | AACAAGATGCATCTTCTTTT+CGG | + | chr1_4:56210095-56210114 | None:intergenic | 30.0% |
| TTGTAGTCTTCATCTTGATA+CGG | - | chr1_4:56211159-56211178 | Msa0171450:intron | 30.0% | |
| ATACTAGTAAGCTTCTACAT+AGG | + | chr1_4:56211252-56211271 | None:intergenic | 30.0% | |
| TATTGTCACAAAATAAGGGT+TGG | + | chr1_4:56211471-56211490 | None:intergenic | 30.0% | |
| CTTGAAATACTTCAGTTGTT+TGG | - | chr1_4:56211643-56211662 | Msa0171450:intron | 30.0% | |
| ! | GTTCGTTGACTAAAAATTTG+AGG | + | chr1_4:56211675-56211694 | None:intergenic | 30.0% |
| GTAGGATAAATTAACAGTAC+AGG | + | chr1_4:56211697-56211716 | None:intergenic | 30.0% | |
| ! | TCGATACAAACAGACATTTT+TGG | + | chr1_4:56212044-56212063 | None:intergenic | 30.0% |
| TACTTGAAGGAATAGAAGTT+AGG | - | chr1_4:56212227-56212246 | Msa0171450:intron | 30.0% | |
| GTTGCTTAATTGTCTTACTT+AGG | + | chr1_4:56212253-56212272 | None:intergenic | 30.0% | |
| ! | AAGACATGTTGGGTTGTAAT+AGG | + | chr1_4:56209516-56209535 | None:intergenic | 35.0% |
| AAAACAATGAAAGACAGGAG+AGG | - | chr1_4:56209631-56209650 | Msa0171450:CDS | 35.0% | |
| AAACAATGAAAGACAGGAGA+GGG | - | chr1_4:56209632-56209651 | Msa0171450:CDS | 35.0% | |
| GTGTGTTCTCTCTTTGTATA+GGG | + | chr1_4:56209658-56209677 | None:intergenic | 35.0% | |
| TGTGTGTTCTCTCTTTGTAT+AGG | + | chr1_4:56209659-56209678 | None:intergenic | 35.0% | |
| TAGAAGTTTCTTTGCCTCTT+AGG | + | chr1_4:56209701-56209720 | None:intergenic | 35.0% | |
| AGAAACCTAAACTGCTAAAC+AGG | - | chr1_4:56209752-56209771 | Msa0171450:CDS | 35.0% | |
| CATTTCCTGTTTAGCAGTTT+AGG | + | chr1_4:56209760-56209779 | None:intergenic | 35.0% | |
| ! | AACAAGATGCGTCTTCTTTT+CGG | + | chr1_4:56210574-56210593 | None:intergenic | 35.0% |
| AAGACGCATCTTGTTGATAT+GGG | - | chr1_4:56210579-56210598 | Msa0171450:intron | 35.0% | |
| ! | ACTACTGGACAATTTCTAGA+CGG | - | chr1_4:56211136-56211155 | Msa0171450:intron | 35.0% |
| ! | TTTGAAATGCACAATTGGCT+AGG | - | chr1_4:56211201-56211220 | Msa0171450:intron | 35.0% |
| TTGAAATGCACAATTGGCTA+GGG | - | chr1_4:56211202-56211221 | Msa0171450:intron | 35.0% | |
| AACTTCATCCTTACACTATC+AGG | - | chr1_4:56211226-56211245 | Msa0171450:intron | 35.0% | |
| TAGAAGCTTACTAGTATGTG+TGG | - | chr1_4:56211255-56211274 | Msa0171450:intron | 35.0% | |
| ACTTCTGACACTAGATTTCT+GGG | + | chr1_4:56211353-56211372 | None:intergenic | 35.0% | |
| AACTTCTGACACTAGATTTC+TGG | + | chr1_4:56211354-56211373 | None:intergenic | 35.0% | |
| TAATAGCCAAGGTAATTGAC+TGG | + | chr1_4:56211415-56211434 | None:intergenic | 35.0% | |
| TCACTTTCTCATGATAAGTG+TGG | + | chr1_4:56211514-56211533 | None:intergenic | 35.0% | |
| ACACTTATCATGAGAAAGTG+AGG | - | chr1_4:56211513-56211532 | Msa0171450:intron | 35.0% | |
| TTTACCTTCTCCTCACTTAA+AGG | + | chr1_4:56211558-56211577 | None:intergenic | 35.0% | |
| GACAAACGGAGAATCTATAT+AGG | + | chr1_4:56211721-56211740 | None:intergenic | 35.0% | |
| GACTGTGGGATTAAAATTTG+TGG | - | chr1_4:56211860-56211879 | Msa0171450:intron | 35.0% | |
| GTGGGATTAAAATTTGTGGT+AGG | - | chr1_4:56211864-56211883 | Msa0171450:intron | 35.0% | |
| AAGCTGCATACTGAGTATTT+GGG | + | chr1_4:56211910-56211929 | None:intergenic | 35.0% | |
| TAAGCTGCATACTGAGTATT+TGG | + | chr1_4:56211911-56211930 | None:intergenic | 35.0% | |
| TTCAAGGTGATTGATGTCAT+TGG | - | chr1_4:56211938-56211957 | Msa0171450:intron | 35.0% | |
| TGTTTGTATCGAAATGTCGA+AGG | - | chr1_4:56212052-56212071 | Msa0171450:intron | 35.0% | |
| ! | GTTTTTATGGAGATAAGGGA+TGG | - | chr1_4:56212184-56212203 | Msa0171450:intron | 35.0% |
| CTTAAAGCTAACCTGGAATC+TGG | + | chr1_4:56209443-56209462 | None:intergenic | 40.0% | |
| AAGCCAAAACTACTCCTAAG+AGG | - | chr1_4:56209684-56209703 | Msa0171450:CDS | 40.0% | |
| ! | TTGCCTCTTAGGAGTAGTTT+TGG | + | chr1_4:56209690-56209709 | None:intergenic | 40.0% |
| !! | TAACATCCCAGACTGCTTTT+AGG | - | chr1_4:56209917-56209936 | Msa0171450:CDS | 40.0% |
| !! | TGTTGGTTTGTAGGGTTAGT+CGG | + | chr1_4:56209947-56209966 | None:intergenic | 40.0% |
| !! | AAGACTCGTGTTGGTTTGTA+GGG | + | chr1_4:56209955-56209974 | None:intergenic | 40.0% |
| !! | AAAGACTCGTGTTGGTTTGT+AGG | + | chr1_4:56209956-56209975 | None:intergenic | 40.0% |
| GCTTAACTGTGGAGTTCTTA+TGG | - | chr1_4:56210060-56210079 | Msa0171450:intron | 40.0% | |
| CGAATCACATCGAAATGAGA+GGG | + | chr1_4:56210193-56210212 | None:intergenic | 40.0% | |
| CCTCTCATTTCGATGTGATT+CGG | - | chr1_4:56210191-56210210 | Msa0171450:intron | 40.0% | |
| ! | AACCTTTTGTATCCAACTGG+CGG | - | chr1_4:56210270-56210289 | Msa0171450:intron | 40.0% |
| ! | CAGTCTGGGATGTTACAAAA+TGG | + | chr1_4:56210391-56210410 | None:intergenic | 40.0% |
| !! | TAACATCCCAGACTGCTTTT+AGG | - | chr1_4:56209917-56209936 | Msa0171450:CDS | 40.0% |
| !! | AAAGACTCGTGTTGGTTTGT+GGG | + | chr1_4:56209956-56209975 | None:intergenic | 40.0% |
| !! | AAAAGACTCGTGTTGGTTTG+TGG | + | chr1_4:56209957-56209976 | None:intergenic | 40.0% |
| GCTTAACTGTGGAGTTCTTA+TGG | - | chr1_4:56210060-56210079 | Msa0171450:intron | 40.0% | |
| GAAGACGCATCTTGTTGATA+TGG | - | chr1_4:56210578-56210597 | Msa0171450:intron | 40.0% | |
| CGAATCACATCGAAATGAGA+GGG | + | chr1_4:56210193-56210212 | None:intergenic | 40.0% | |
| CCTCTCATTTCGATGTGATT+CGG | - | chr1_4:56210191-56210210 | Msa0171450:intron | 40.0% | |
| TTCCAAGTCCTTCATCATTC+AGG | - | chr1_4:56210924-56210943 | Msa0171450:intron | 40.0% | |
| CAACTTGAGTATAGTGAGCA+TGG | + | chr1_4:56210973-56210992 | None:intergenic | 40.0% | |
| GTGGAAGGAATGTCAGAAAA+TGG | + | chr1_4:56211007-56211026 | None:intergenic | 40.0% | |
| TGTGACGAGTAGAATACTAC+TGG | - | chr1_4:56211121-56211140 | Msa0171450:intron | 40.0% | |
| ! | TACATAGGCCTGATAGTGTA+AGG | + | chr1_4:56211237-56211256 | None:intergenic | 40.0% |
| CGCAAAACATGTAATAGCCA+AGG | + | chr1_4:56211426-56211445 | None:intergenic | 40.0% | |
| CACAAAATAAGGGTTGGAGT+TGG | + | chr1_4:56211465-56211484 | None:intergenic | 40.0% | |
| AAGTGAGGCATGTAGAAAAG+TGG | - | chr1_4:56211528-56211547 | Msa0171450:intron | 40.0% | |
| CGGAGAATCTATATAGGTGT+AGG | + | chr1_4:56211715-56211734 | None:intergenic | 40.0% | |
| AGTATTTGGGGACAAGTCAA+AGG | + | chr1_4:56211897-56211916 | None:intergenic | 40.0% | |
| AGCTGCATACTGAGTATTTG+GGG | + | chr1_4:56211909-56211928 | None:intergenic | 40.0% | |
| TGCAGCTTATCTTGTGTTCA+AGG | - | chr1_4:56211922-56211941 | Msa0171450:intron | 40.0% | |
| TTGTATCGAAATGTCGAAGG+TGG | - | chr1_4:56212055-56212074 | Msa0171450:intron | 40.0% | |
| TGTATCGAAATGTCGAAGGT+GGG | - | chr1_4:56212056-56212075 | Msa0171450:intron | 40.0% | |
| ! | AGTTCTAGTGTGAGAAGTGA+TGG | - | chr1_4:56212097-56212116 | Msa0171450:intron | 40.0% |
| GTTCTAGTGTGAGAAGTGAT+GGG | - | chr1_4:56212098-56212117 | Msa0171450:intron | 40.0% | |
| TCATCTTGACTTCAGCTTCT+AGG | + | chr1_4:56212162-56212181 | None:intergenic | 40.0% | |
| AACACACGTCTCTTACTTGA+AGG | - | chr1_4:56212214-56212233 | Msa0171450:intron | 40.0% | |
| AACAGTCACTGAACTATGCA+AGG | - | chr1_4:56212270-56212289 | Msa0171450:intron | 40.0% | |
| ACAGTCACTGAACTATGCAA+GGG | - | chr1_4:56212271-56212290 | Msa0171450:intron | 40.0% | |
| !! | TTAAGCACCGGAACTCATCA+GGG | + | chr1_4:56209586-56209605 | None:intergenic | 45.0% |
| !! | ATTAAGCACCGGAACTCATC+AGG | + | chr1_4:56209587-56209606 | None:intergenic | 45.0% |
| ! | TGTTACAGTATGCTGACTGG+TGG | + | chr1_4:56209902-56209921 | None:intergenic | 45.0% |
| GGATGTTACAGTATGCTGAC+TGG | + | chr1_4:56209905-56209924 | None:intergenic | 45.0% | |
| GGCAATCCTAAAAGCAGTCT+GGG | + | chr1_4:56209926-56209945 | None:intergenic | 45.0% | |
| CATGCTGAAAAGACTCGTGT+TGG | + | chr1_4:56209964-56209983 | None:intergenic | 45.0% | |
| GCTTGGAGTAGTACTAGGAT+GGG | + | chr1_4:56210033-56210052 | None:intergenic | 45.0% | |
| GTATGGGACTACATGGTTGA+AGG | + | chr1_4:56210153-56210172 | None:intergenic | 45.0% | |
| CATGTAGTCCCATACCTACA+CGG | - | chr1_4:56210158-56210177 | Msa0171450:intron | 45.0% | |
| ACATCGAAATGAGAGGGATC+CGG | + | chr1_4:56210187-56210206 | None:intergenic | 45.0% | |
| CCGAATCACATCGAAATGAG+AGG | + | chr1_4:56210194-56210213 | None:intergenic | 45.0% | |
| TTCGGTTCCTCTTACTAACG+TGG | - | chr1_4:56210209-56210228 | Msa0171450:intron | 45.0% | |
| TCGGTTCCTCTTACTAACGT+GGG | - | chr1_4:56210210-56210229 | Msa0171450:intron | 45.0% | |
| TACAAAAGGTTCCCGCAAGT+TGG | + | chr1_4:56210261-56210280 | None:intergenic | 45.0% | |
| ! | GGGAACCTTTTGTATCCAAC+TGG | - | chr1_4:56210267-56210286 | Msa0171450:intron | 45.0% |
| ! | ACCTTTTGTATCCAACTGGC+GGG | - | chr1_4:56210271-56210290 | Msa0171450:intron | 45.0% |
| GATATCGAAAGACACGTCGT+GGG | - | chr1_4:56210293-56210312 | Msa0171450:intron | 45.0% | |
| GGCAATCCTAAAAGCAGTCT+GGG | + | chr1_4:56209926-56209945 | None:intergenic | 45.0% | |
| !! | TGTTGGTTTGTGGGGTTAGT+CGG | + | chr1_4:56210426-56210445 | None:intergenic | 45.0% |
| !! | AAGACTCGTGTTGGTTTGTG+GGG | + | chr1_4:56210434-56210453 | None:intergenic | 45.0% |
| CATGCTGAAAAGACTCGTGT+TGG | + | chr1_4:56209964-56209983 | None:intergenic | 45.0% | |
| GCTTGGAGTAGTACTAGGAT+GGG | + | chr1_4:56210033-56210052 | None:intergenic | 45.0% | |
| GTATGGGACTACATGGTTGA+AGG | + | chr1_4:56210153-56210172 | None:intergenic | 45.0% | |
| CATGTAGTCCCATACCTACA+CGG | - | chr1_4:56210158-56210177 | Msa0171450:intron | 45.0% | |
| ACATCGAAATGAGAGGGATC+CGG | + | chr1_4:56210187-56210206 | None:intergenic | 45.0% | |
| CCGAATCACATCGAAATGAG+AGG | + | chr1_4:56210194-56210213 | None:intergenic | 45.0% | |
| TTCGGTTCCTCTTACTAACG+TGG | - | chr1_4:56210209-56210228 | Msa0171450:intron | 45.0% | |
| TCGGTTCCTCTTACTAACGT+GGG | - | chr1_4:56210210-56210229 | Msa0171450:intron | 45.0% | |
| AACCTTTCGTATCCAACTGG+CGG | - | chr1_4:56210749-56210768 | Msa0171450:intron | 45.0% | |
| GTCCTGAATGATGAAGGACT+TGG | + | chr1_4:56210929-56210948 | None:intergenic | 45.0% | |
| CCTGATGTCCTGAATGATGA+AGG | + | chr1_4:56210935-56210954 | None:intergenic | 45.0% | |
| CCTTCATCATTCAGGACATC+AGG | - | chr1_4:56210932-56210951 | Msa0171450:intron | 45.0% | |
| AAGTGGACGTCCTTTAAGTG+AGG | - | chr1_4:56211545-56211564 | Msa0171450:intron | 45.0% | |
| ACGTCCTTTAAGTGAGGAGA+AGG | - | chr1_4:56211551-56211570 | Msa0171450:intron | 45.0% | |
| AGTGAGGAGAAGGTAAATGC+TGG | - | chr1_4:56211561-56211580 | Msa0171450:intron | 45.0% | |
| ! | ATGTTGGCTGGATTGACTGT+GGG | - | chr1_4:56211846-56211865 | Msa0171450:intron | 45.0% |
| TGGATTTACTAGCCGTCATG+TGG | - | chr1_4:56211958-56211977 | Msa0171450:intron | 45.0% | |
| CAACTGAGAACTCCACATGA+CGG | + | chr1_4:56211973-56211992 | None:intergenic | 45.0% | |
| GTATCGAAATGTCGAAGGTG+GGG | - | chr1_4:56212057-56212076 | Msa0171450:intron | 45.0% | |
| ! | TGGGTGGTTTGAGATTGACA+TGG | - | chr1_4:56212117-56212136 | Msa0171450:intron | 45.0% |
| ! | GGGTGGTTTGAGATTGACAT+GGG | - | chr1_4:56212118-56212137 | Msa0171450:intron | 45.0% |
| ATGGGACAGTTCTTCAGTTC+AGG | - | chr1_4:56212136-56212155 | Msa0171450:intron | 45.0% | |
| CAGTCACTGAACTATGCAAG+GGG | - | chr1_4:56212272-56212291 | Msa0171450:intron | 45.0% | |
| GGAATCGTATGCCAGATTCC+AGG | - | chr1_4:56209429-56209448 | Msa0171450:three_prime_UTR | 50.0% | |
| ! | ATAGCGCTTGTTGAGCCTTG+AGG | - | chr1_4:56209550-56209569 | Msa0171450:CDS | 50.0% |
| GAACTCATCAGGGTCGAGAT+AGG | + | chr1_4:56209576-56209595 | None:intergenic | 50.0% | |
| ATCTCGACCCTGATGAGTTC+CGG | - | chr1_4:56209576-56209595 | Msa0171450:CDS | 50.0% | |
| CGGCAATCCTAAAAGCAGTC+TGG | + | chr1_4:56209927-56209946 | None:intergenic | 50.0% | |
| GTCCTCACTCACATGCTTAC+CGG | - | chr1_4:56209988-56210007 | Msa0171450:intron | 50.0% | |
| TCCTCACTCACATGCTTACC+GGG | - | chr1_4:56209989-56210008 | Msa0171450:intron | 50.0% | |
| ATGCTTACCGGGAAACTTCC+CGG | - | chr1_4:56210000-56210019 | Msa0171450:intron | 50.0% | |
| TACTAGGATGGGTGACCTAC+CGG | + | chr1_4:56210022-56210041 | None:intergenic | 50.0% | |
| GGCTTGGAGTAGTACTAGGA+TGG | + | chr1_4:56210034-56210053 | None:intergenic | 50.0% | |
| !! | GCTTGGCTTGGAGTAGTACT+AGG | + | chr1_4:56210038-56210057 | None:intergenic | 50.0% |
| ACAGTTAAGCGTGCTTGGCT+TGG | + | chr1_4:56210050-56210069 | None:intergenic | 50.0% | |
| AAGCCAAGCACGCTTAACTG+TGG | - | chr1_4:56210049-56210068 | Msa0171450:intron | 50.0% | |
| ACTCCACAGTTAAGCGTGCT+TGG | + | chr1_4:56210055-56210074 | None:intergenic | 50.0% | |
| CGTGTAGGTATGGGACTACA+TGG | + | chr1_4:56210160-56210179 | None:intergenic | 50.0% | |
| CGGTTCCTCTTACTAACGTG+GGG | - | chr1_4:56210211-56210230 | Msa0171450:intron | 50.0% | |
| GATGACCCCACGTTAGTAAG+AGG | + | chr1_4:56210219-56210238 | None:intergenic | 50.0% | |
| CTAACGTGGGGTCATCCTTA+CGG | - | chr1_4:56210223-56210242 | Msa0171450:intron | 50.0% | |
| ATAGTGCCCGTTCCAACTTG+CGG | - | chr1_4:56210246-56210265 | Msa0171450:intron | 50.0% | |
| ! | AAGGTTCCCGCAAGTTGGAA+CGG | + | chr1_4:56210256-56210275 | None:intergenic | 50.0% |
| TCCCGCCAGTTGGATACAAA+AGG | + | chr1_4:56210275-56210294 | None:intergenic | 50.0% | |
| TCTTTCGATATCCCGCCAGT+TGG | + | chr1_4:56210285-56210304 | None:intergenic | 50.0% | |
| GGATATCGAAAGACACGTCG+TGG | - | chr1_4:56210292-56210311 | Msa0171450:intron | 50.0% | |
| TCTCCCAGTAAGGTGTGGTT+CGG | + | chr1_4:56210354-56210373 | None:intergenic | 50.0% | |
| CGGCAATCCTAAAAGCAGTC+TGG | + | chr1_4:56209927-56209946 | None:intergenic | 50.0% | |
| GTCCTCACTCACATGCTTAC+CGG | - | chr1_4:56209988-56210007 | Msa0171450:intron | 50.0% | |
| TCCTCACTCACATGCTTACC+GGG | - | chr1_4:56209989-56210008 | Msa0171450:intron | 50.0% | |
| ATGCTTACCGGGAAACTTCC+CGG | - | chr1_4:56210000-56210019 | Msa0171450:intron | 50.0% | |
| TACTAGGATGGGTGACCTAC+CGG | + | chr1_4:56210022-56210041 | None:intergenic | 50.0% | |
| GGCTTGGAGTAGTACTAGGA+TGG | + | chr1_4:56210034-56210053 | None:intergenic | 50.0% | |
| !! | GCTTGGCTTGGAGTAGTACT+AGG | + | chr1_4:56210038-56210057 | None:intergenic | 50.0% |
| ACAGTTAAGCGTGCTTGGCT+TGG | + | chr1_4:56210050-56210069 | None:intergenic | 50.0% | |
| AAGCCAAGCACGCTTAACTG+TGG | - | chr1_4:56210049-56210068 | Msa0171450:intron | 50.0% | |
| ACTCCACAGTTAAGCGTGCT+TGG | + | chr1_4:56210055-56210074 | None:intergenic | 50.0% | |
| CGTGTAGGTATGGGACTACA+TGG | + | chr1_4:56210160-56210179 | None:intergenic | 50.0% | |
| CGGTTCCTCTTACTAACGTG+GGG | - | chr1_4:56210211-56210230 | Msa0171450:intron | 50.0% | |
| GATGACCCCACGTTAGTAAG+AGG | + | chr1_4:56210219-56210238 | None:intergenic | 50.0% | |
| CTAACGTGGGGTCATCCTTA+CGG | - | chr1_4:56210223-56210242 | Msa0171450:intron | 50.0% | |
| GGGAACCTTTCGTATCCAAC+TGG | - | chr1_4:56210746-56210765 | Msa0171450:intron | 50.0% | |
| ACCTTTCGTATCCAACTGGC+GGG | - | chr1_4:56210750-56210769 | Msa0171450:intron | 50.0% | |
| GATATCGAAAGCCACGTCGT+GGG | - | chr1_4:56210772-56210791 | Msa0171450:intron | 50.0% | |
| TATGTGTAACACCCACGACG+TGG | + | chr1_4:56210786-56210805 | None:intergenic | 50.0% | |
| ! | CCAAGGTAATTGACTGGCCA+CGG | + | chr1_4:56211409-56211428 | None:intergenic | 50.0% |
| ! | GATGTTGGCTGGATTGACTG+TGG | - | chr1_4:56211845-56211864 | Msa0171450:intron | 50.0% |
| CGTCATGTGGAGTTCTCAGT+TGG | - | chr1_4:56211971-56211990 | Msa0171450:intron | 50.0% | |
| ! | TGTGGAGTTCTCAGTTGGTG+TGG | - | chr1_4:56211976-56211995 | Msa0171450:intron | 50.0% |
| ! | GTGGAGTTCTCAGTTGGTGT+GGG | - | chr1_4:56211977-56211996 | Msa0171450:intron | 50.0% |
| ! | TTCTCAGTTGGTGTGGGAAG+TGG | - | chr1_4:56211983-56212002 | Msa0171450:intron | 50.0% |
| ! | CTAGTGTGAGAAGTGATGGG+TGG | - | chr1_4:56212101-56212120 | Msa0171450:intron | 50.0% |
| TCTGCCATCCAAGACGCAAA+AGG | + | chr1_4:56212299-56212318 | None:intergenic | 50.0% | |
| TCCCGGTAAGCATGTGAGTG+AGG | + | chr1_4:56209993-56210012 | None:intergenic | 55.0% | |
| TTACCGGGAAACTTCCCGGT+AGG | - | chr1_4:56210004-56210023 | Msa0171450:intron | 55.0% | |
| TGACCTACCGGGAAGTTTCC+CGG | + | chr1_4:56210010-56210029 | None:intergenic | 55.0% | |
| ACTAGGATGGGTGACCTACC+GGG | + | chr1_4:56210021-56210040 | None:intergenic | 55.0% | |
| TCGAAATGAGAGGGATCCGG+AGG | + | chr1_4:56210184-56210203 | None:intergenic | 55.0% | |
| TGGAACGGGCACTATCCGTA+AGG | + | chr1_4:56210241-56210260 | None:intergenic | 55.0% | |
| TAGTGCCCGTTCCAACTTGC+GGG | - | chr1_4:56210247-56210266 | Msa0171450:intron | 55.0% | |
| ! | AGGTTCCCGCAAGTTGGAAC+GGG | + | chr1_4:56210255-56210274 | None:intergenic | 55.0% |
| TCCCCGAACCACACCTTACT+GGG | - | chr1_4:56210348-56210367 | Msa0171450:intron | 55.0% | |
| TCCCAGTAAGGTGTGGTTCG+GGG | + | chr1_4:56210352-56210371 | None:intergenic | 55.0% | |
| CTCCCAGTAAGGTGTGGTTC+GGG | + | chr1_4:56210353-56210372 | None:intergenic | 55.0% | |
| GAACCACACCTTACTGGGAG+AGG | - | chr1_4:56210353-56210372 | Msa0171450:intron | 55.0% | |
| AGACCTCTCCCAGTAAGGTG+TGG | + | chr1_4:56210359-56210378 | None:intergenic | 55.0% | |
| CTTACTGGGAGAGGTCTGCT+CGG | - | chr1_4:56210362-56210381 | Msa0171450:intron | 55.0% | |
| TCCCGGTAAGCATGTGAGTG+AGG | + | chr1_4:56209993-56210012 | None:intergenic | 55.0% | |
| TTACCGGGAAACTTCCCGGT+AGG | - | chr1_4:56210004-56210023 | Msa0171450:intron | 55.0% | |
| TGACCTACCGGGAAGTTTCC+CGG | + | chr1_4:56210010-56210029 | None:intergenic | 55.0% | |
| ACTAGGATGGGTGACCTACC+GGG | + | chr1_4:56210021-56210040 | None:intergenic | 55.0% | |
| TCGAAATGAGAGGGATCCGG+AGG | + | chr1_4:56210184-56210203 | None:intergenic | 55.0% | |
| TGGAACGGGCACTATCCGTA+AGG | + | chr1_4:56210241-56210260 | None:intergenic | 55.0% | |
| ATAGTGCCCGTTCCAACTGG+CGG | - | chr1_4:56210725-56210744 | Msa0171450:intron | 55.0% | |
| AAGGTTCCCGCCAGTTGGAA+CGG | + | chr1_4:56210735-56210754 | None:intergenic | 55.0% | |
| TACGAAAGGTTCCCGCCAGT+TGG | + | chr1_4:56210740-56210759 | None:intergenic | 55.0% | |
| TCCCGCCAGTTGGATACGAA+AGG | + | chr1_4:56210754-56210773 | None:intergenic | 55.0% | |
| GCTTTCGATATCCCGCCAGT+TGG | + | chr1_4:56210764-56210783 | None:intergenic | 55.0% | |
| GGATATCGAAAGCCACGTCG+TGG | - | chr1_4:56210771-56210790 | Msa0171450:intron | 55.0% | |
| GTATGTGTCCTTAGCAGCCG+TGG | - | chr1_4:56211389-56211408 | Msa0171450:intron | 55.0% | |
| CCGTGGCCAGTCAATTACCT+TGG | - | chr1_4:56211406-56211425 | Msa0171450:intron | 55.0% | |
| CACGAAGCTCAGCGACTTCA+GGG | + | chr1_4:56211826-56211845 | None:intergenic | 55.0% | |
| TCACGAAGCTCAGCGACTTC+AGG | + | chr1_4:56211827-56211846 | None:intergenic | 55.0% | |
| GTCGCTGAGCTTCGTGATGT+TGG | - | chr1_4:56211830-56211849 | Msa0171450:intron | 55.0% | |
| CTGAGCTTCGTGATGTTGGC+TGG | - | chr1_4:56211834-56211853 | Msa0171450:intron | 55.0% | |
| ! | CAAGGGGTCCTTTTGCGTCT+TGG | - | chr1_4:56212288-56212307 | Msa0171450:intron | 55.0% |
| ! | GGGTCCTTTTGCGTCTTGGA+TGG | - | chr1_4:56212292-56212311 | Msa0171450:intron | 55.0% |
| CAGGGTCGAGATAGGCCTCA+AGG | + | chr1_4:56209568-56209587 | None:intergenic | 60.0% | |
| TCCCATACCTACACGGCCTC+CGG | - | chr1_4:56210165-56210184 | Msa0171450:intron | 60.0% | |
| TCCGGAGGCCGTGTAGGTAT+GGG | + | chr1_4:56210169-56210188 | None:intergenic | 60.0% | |
| ATCCGGAGGCCGTGTAGGTA+TGG | + | chr1_4:56210170-56210189 | None:intergenic | 60.0% | |
| GTCCCCGAACCACACCTTAC+TGG | - | chr1_4:56210347-56210366 | Msa0171450:intron | 60.0% | |
| CGAGCAGACCTCTCCCAGTA+AGG | + | chr1_4:56210364-56210383 | None:intergenic | 60.0% | |
| TCCCATACCTACACGGCCTC+CGG | - | chr1_4:56210165-56210184 | Msa0171450:intron | 60.0% | |
| TCCGGAGGCCGTGTAGGTAT+GGG | + | chr1_4:56210169-56210188 | None:intergenic | 60.0% | |
| ATCCGGAGGCCGTGTAGGTA+TGG | + | chr1_4:56210170-56210189 | None:intergenic | 60.0% | |
| CGGATAGTGCCCGTTCCAAC+TGG | - | chr1_4:56210243-56210262 | Msa0171450:intron | 60.0% | |
| TAGTGCCCGTTCCAACTGGC+GGG | - | chr1_4:56210726-56210745 | Msa0171450:intron | 60.0% | |
| AGGTTCCCGCCAGTTGGAAC+GGG | + | chr1_4:56210734-56210753 | None:intergenic | 60.0% | |
| ! | TTGACTGGCCACGGCTGCTA+AGG | + | chr1_4:56211400-56211419 | None:intergenic | 60.0% |
| CGAACCAGGCGGAAGCTGGT+GGG | + | chr1_4:56210328-56210347 | None:intergenic | 65.0% | |
| ACGAACCAGGCGGAAGCTGG+TGG | + | chr1_4:56210329-56210348 | None:intergenic | 65.0% | |
| ! | TGGTTCGGGGACGAACCAGG+CGG | + | chr1_4:56210339-56210358 | None:intergenic | 65.0% |
| ! | GTGTGGTTCGGGGACGAACC+AGG | + | chr1_4:56210342-56210361 | None:intergenic | 65.0% |
| GAGGGATCCGGAGGCCGTGT+AGG | + | chr1_4:56210175-56210194 | None:intergenic | 70.0% | |
| CATGCCCACCAGCTTCCGCC+TGG | - | chr1_4:56210321-56210340 | Msa0171450:intron | 70.0% | |
| GGGACGAACCAGGCGGAAGC+TGG | + | chr1_4:56210332-56210351 | None:intergenic | 70.0% | |
| GAGGGATCCGGAGGCCGTGT+AGG | + | chr1_4:56210175-56210194 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 56209402 | 56212398 | 56209402 | ID=Msa0171450;Name=Msa0171450 |
| chr1_4 | mRNA | 56209402 | 56212398 | 56209402 | ID=Msa0171450-mRNA-1;Parent=Msa0171450;Name=Msa0171450-mRNA-1;_AED=0.45;_eAED=0.46;_QI=0|0|0.5|1|1|1|2|140|151 |
| chr1_4 | exon | 56209402 | 56209993 | 56209402 | ID=Msa0171450-mRNA-1:exon:16974;Parent=Msa0171450-mRNA-1 |
| chr1_4 | exon | 56212395 | 56212398 | 56212395 | ID=Msa0171450-mRNA-1:exon:16973;Parent=Msa0171450-mRNA-1 |
| chr1_4 | CDS | 56212395 | 56212398 | 56212395 | ID=Msa0171450-mRNA-1:cds;Parent=Msa0171450-mRNA-1 |
| chr1_4 | CDS | 56209542 | 56209993 | 56209542 | ID=Msa0171450-mRNA-1:cds;Parent=Msa0171450-mRNA-1 |
| chr1_4 | three_prime_UTR | 56209402 | 56209541 | 56209402 | ID=Msa0171450-mRNA-1:three_prime_utr;Parent=Msa0171450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
