Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079640 | sp|Q43317|CYSK_CITLA | 89.506 | 324 | 34 | 0 | 1 | 324 | 1 | 324 | 0.0 | 549 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079640 | A0A2K3PLS0 | 99.077 | 325 | 3 | 0 | 1 | 325 | 1 | 325 | 0.0 | 646 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042420 | Msa0079640 | 0.807918 | 3.996880e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079640 | MtrunA17_Chr1g0191041 | 97.846 | 325 | 7 | 0 | 1 | 325 | 1 | 325 | 0.0 | 639 |
| Msa0079640 | MtrunA17_Chr5g0394491 | 88.272 | 324 | 38 | 0 | 1 | 324 | 1 | 324 | 0.0 | 533 |
| Msa0079640 | MtrunA17_Chr1g0205381 | 87.654 | 324 | 40 | 0 | 1 | 324 | 1 | 324 | 0.0 | 530 |
| Msa0079640 | MtrunA17_Chr1g0191051 | 75.155 | 322 | 80 | 0 | 3 | 324 | 2 | 323 | 8.97e-170 | 474 |
| Msa0079640 | MtrunA17_Chr4g0045721 | 70.000 | 320 | 96 | 0 | 2 | 321 | 41 | 360 | 3.33e-169 | 474 |
| Msa0079640 | MtrunA17_Chr4g0045781 | 73.333 | 315 | 84 | 0 | 7 | 321 | 65 | 379 | 3.73e-161 | 454 |
| Msa0079640 | MtrunA17_Chr4g0045771 | 65.938 | 320 | 100 | 2 | 2 | 321 | 41 | 351 | 2.30e-156 | 441 |
| Msa0079640 | MtrunA17_Chr1g0191061 | 64.624 | 359 | 81 | 2 | 12 | 324 | 25 | 383 | 7.59e-151 | 429 |
| Msa0079640 | MtrunA17_Chr7g0248021 | 63.608 | 316 | 115 | 0 | 6 | 321 | 59 | 374 | 1.34e-146 | 417 |
| Msa0079640 | MtrunA17_Chr7g0254401 | 63.208 | 318 | 107 | 1 | 4 | 321 | 61 | 368 | 9.99e-137 | 392 |
| Msa0079640 | MtrunA17_Chr1g0191071 | 69.145 | 269 | 78 | 1 | 56 | 324 | 1 | 264 | 5.83e-117 | 338 |
| Msa0079640 | MtrunA17_Chr5g0446431 | 29.462 | 353 | 190 | 6 | 12 | 307 | 48 | 398 | 4.11e-42 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0079640 | AT4G14880.5 | 80.564 | 319 | 62 | 0 | 6 | 324 | 3 | 321 | 0.0 | 504 |
| Msa0079640 | AT4G14880.3 | 80.564 | 319 | 62 | 0 | 6 | 324 | 3 | 321 | 0.0 | 504 |
| Msa0079640 | AT4G14880.4 | 80.564 | 319 | 62 | 0 | 6 | 324 | 3 | 321 | 0.0 | 504 |
| Msa0079640 | AT4G14880.2 | 80.564 | 319 | 62 | 0 | 6 | 324 | 3 | 321 | 0.0 | 504 |
| Msa0079640 | AT4G14880.1 | 80.564 | 319 | 62 | 0 | 6 | 324 | 3 | 321 | 0.0 | 504 |
| Msa0079640 | AT2G43750.1 | 75.238 | 315 | 78 | 0 | 7 | 321 | 74 | 388 | 6.96e-166 | 467 |
| Msa0079640 | AT2G43750.2 | 75.238 | 315 | 78 | 0 | 7 | 321 | 74 | 388 | 6.96e-166 | 467 |
| Msa0079640 | AT3G59760.3 | 74.528 | 318 | 81 | 0 | 4 | 321 | 109 | 426 | 2.12e-165 | 468 |
| Msa0079640 | AT3G59760.1 | 74.528 | 318 | 81 | 0 | 4 | 321 | 109 | 426 | 2.63e-165 | 468 |
| Msa0079640 | AT3G04940.1 | 71.028 | 321 | 93 | 0 | 1 | 321 | 1 | 321 | 5.27e-160 | 450 |
| Msa0079640 | AT3G04940.2 | 71.028 | 321 | 93 | 0 | 1 | 321 | 1 | 321 | 5.27e-160 | 450 |
| Msa0079640 | AT5G28020.2 | 72.360 | 322 | 89 | 0 | 3 | 324 | 2 | 323 | 2.10e-158 | 446 |
| Msa0079640 | AT5G28020.4 | 72.360 | 322 | 89 | 0 | 3 | 324 | 2 | 323 | 2.10e-158 | 446 |
| Msa0079640 | AT5G28020.1 | 72.360 | 322 | 89 | 0 | 3 | 324 | 2 | 323 | 2.10e-158 | 446 |
| Msa0079640 | AT5G28020.3 | 72.360 | 322 | 89 | 0 | 3 | 324 | 2 | 323 | 2.10e-158 | 446 |
| Msa0079640 | AT5G28020.6 | 72.360 | 322 | 89 | 0 | 3 | 324 | 2 | 323 | 2.10e-158 | 446 |
| Msa0079640 | AT3G59760.2 | 70.370 | 324 | 94 | 2 | 4 | 325 | 109 | 432 | 8.27e-151 | 431 |
| Msa0079640 | AT5G28030.1 | 69.876 | 322 | 97 | 0 | 3 | 324 | 2 | 323 | 2.05e-148 | 421 |
| Msa0079640 | AT5G28030.4 | 69.876 | 322 | 97 | 0 | 3 | 324 | 2 | 323 | 2.05e-148 | 421 |
| Msa0079640 | AT5G28030.5 | 69.876 | 322 | 97 | 0 | 3 | 324 | 2 | 323 | 2.05e-148 | 421 |
| Msa0079640 | AT5G28030.2 | 69.876 | 322 | 97 | 0 | 3 | 324 | 2 | 323 | 2.05e-148 | 421 |
| Msa0079640 | AT3G22460.1 | 77.695 | 269 | 40 | 1 | 56 | 324 | 1 | 249 | 2.73e-147 | 415 |
| Msa0079640 | AT3G61440.1 | 61.859 | 312 | 119 | 0 | 10 | 321 | 51 | 362 | 5.70e-137 | 393 |
| Msa0079640 | AT3G03630.1 | 63.924 | 316 | 104 | 1 | 8 | 323 | 99 | 404 | 1.23e-133 | 386 |
| Msa0079640 | AT3G61440.2 | 63.534 | 266 | 97 | 0 | 56 | 321 | 1 | 266 | 2.35e-118 | 342 |
| Msa0079640 | AT5G28030.3 | 68.273 | 249 | 79 | 0 | 3 | 251 | 2 | 250 | 7.48e-114 | 330 |
| Msa0079640 | AT3G22460.2 | 83.511 | 188 | 31 | 0 | 1 | 188 | 1 | 188 | 1.12e-112 | 325 |
| Msa0079640 | AT3G61440.4 | 60.305 | 262 | 104 | 0 | 10 | 271 | 51 | 312 | 1.89e-110 | 324 |
| Msa0079640 | AT3G61440.3 | 62.917 | 240 | 89 | 0 | 82 | 321 | 2 | 241 | 8.78e-106 | 309 |
| Msa0079640 | AT5G28020.5 | 70.464 | 237 | 70 | 0 | 88 | 324 | 1 | 237 | 1.14e-105 | 309 |
| Msa0079640 | AT1G55880.1 | 28.375 | 363 | 200 | 8 | 3 | 307 | 35 | 395 | 4.78e-37 | 137 |
| Msa0079640 | AT1G55880.2 | 30.120 | 249 | 132 | 5 | 3 | 210 | 35 | 282 | 3.16e-30 | 117 |
Find 99 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGTTGATGCCCTTGTTTC+TGG | 0.150326 | 1_2:+57580663 | Msa0079640:CDS |
| TAAGTTTGCGTTTGAAATAA+TGG | 0.253643 | 1_2:+57582599 | Msa0079640:three_prime_UTR |
| TAGAAAATTGCTAAATACTA+TGG | 0.267447 | 1_2:+57579030 | Msa0079640:intron |
| ATAATCCTAACCTTAATATC+AGG | 0.274666 | 1_2:-57580741 | None:intergenic |
| TGGCTTCATTCCTGGTGTTC+TGG | 0.280161 | 1_2:+57581482 | Msa0079640:CDS |
| ACTAACACCTTTGGGTTTGC+AGG | 0.288673 | 1_2:-57580515 | None:intergenic |
| TATTCAGATGCAGATGTAAA+TGG | 0.295214 | 1_2:-57582522 | None:intergenic |
| ATTGGTGCTGGCTTCATTCC+TGG | 0.295467 | 1_2:+57581474 | Msa0079640:CDS |
| AGAACCATTCTTCGCGCTTT+TGG | 0.297151 | 1_2:+57580380 | Msa0079640:CDS |
| AAGTTTGCGTTTGAAATAAT+GGG | 0.317342 | 1_2:+57582600 | Msa0079640:three_prime_UTR |
| GTTCGGTGTGATAGGTAGTT+TGG | 0.317527 | 1_2:-57578911 | None:intergenic |
| TGCATTAAAAGAAGGTTTGC+TGG | 0.326558 | 1_2:+57581948 | Msa0079640:CDS |
| AGAGCAAAACCCTGATATTA+AGG | 0.326681 | 1_2:+57580731 | Msa0079640:CDS |
| GGCATTCATGGCAGCTGCTA+AGG | 0.329627 | 1_2:+57580310 | Msa0079640:CDS |
| TGATAGGTAGTTTGGGAATT+GGG | 0.337712 | 1_2:-57578903 | None:intergenic |
| TGGTATTGGTTTGGCATTCA+TGG | 0.343061 | 1_2:+57580298 | Msa0079640:CDS |
| GATGCCCTTGTTTCTGGTAT+AGG | 0.346426 | 1_2:+57580669 | Msa0079640:CDS |
| CTCATGTTACAGTTTGTGTT+TGG | 0.354810 | 1_2:+57582482 | Msa0079640:three_prime_UTR |
| GTGATAGGTAGTTTGGGAAT+TGG | 0.379220 | 1_2:-57578904 | None:intergenic |
| TACAACACAACATTATTTGT+TGG | 0.392246 | 1_2:+57578800 | Msa0079640:five_prime_UTR |
| GCGTACGAGTTCGGTGTGAT+AGG | 0.401469 | 1_2:-57578919 | None:intergenic |
| GGAACCGGAGGTACGGTAAC+AGG | 0.406043 | 1_2:+57580690 | Msa0079640:CDS |
| CTTGTTTCTGGTATAGGAAC+CGG | 0.413375 | 1_2:+57580675 | Msa0079640:CDS |
| TAGGTTCACTATGAAACTAC+TGG | 0.414969 | 1_2:+57580612 | Msa0079640:intron |
| AAACTTCTTGCATTAAAAGA+AGG | 0.415012 | 1_2:+57581940 | Msa0079640:CDS |
| CCAATACCTTGGATCTTATG+AGG | 0.417262 | 1_2:-57581456 | None:intergenic |
| GGTTTCCCTCCAGACAATAC+TGG | 0.417936 | 1_2:-57580907 | None:intergenic |
| TAATAAATGGCGTACGAGTT+CGG | 0.420748 | 1_2:-57578928 | None:intergenic |
| TTCGGTGTGATAGGTAGTTT+GGG | 0.421038 | 1_2:-57578910 | None:intergenic |
| AAACTACTGGACCAGAGATC+TGG | 0.427472 | 1_2:+57580625 | Msa0079640:CDS |
| GCTCCTTTCATACCTTTAGC+TGG | 0.435185 | 1_2:-57580425 | None:intergenic |
| TGCTGAAGAATGTAAGCATT+GGG | 0.439335 | 1_2:-57580482 | None:intergenic |
| ACTAGTGGAAACACTGGTAT+TGG | 0.441486 | 1_2:+57580284 | Msa0079640:CDS |
| TGGAAACACTGGTATTGGTT+TGG | 0.446534 | 1_2:+57580289 | Msa0079640:CDS |
| TTCTCAAATTTGAAGTGGGA+TGG | 0.475311 | 1_2:+57582443 | Msa0079640:three_prime_UTR |
| GCAAAGAAGCCGGAAAATGC+TGG | 0.482832 | 1_2:+57582106 | Msa0079640:CDS |
| CTTGAAAGTCCAGTATTGTC+TGG | 0.488243 | 1_2:+57580898 | Msa0079640:CDS |
| CTCTCAAGACTCATTGAAGC+AGG | 0.492620 | 1_2:-57580356 | None:intergenic |
| GGAGGTACGGTAACAGGTGC+TGG | 0.494965 | 1_2:+57580696 | Msa0079640:CDS |
| CCAGAGATCTGGAAAAGCTC+TGG | 0.501405 | 1_2:+57580636 | Msa0079640:CDS |
| TGCGGCAAAGCTAGAAATGA+TGG | 0.501879 | 1_2:+57579298 | Msa0079640:CDS |
| ATTGCAGATGCTGAGGAGAA+AGG | 0.503285 | 1_2:+57579968 | Msa0079640:CDS |
| CCTCATAAGATCCAAGGTAT+TGG | 0.505205 | 1_2:+57581456 | Msa0079640:CDS |
| GTATTGTCTGGAGGGAAACC+TGG | 0.505854 | 1_2:+57580910 | Msa0079640:CDS |
| AATCTTAATTGCAGCGGCTG+CGG | 0.507802 | 1_2:-57582083 | None:intergenic |
| AGTTTCAATAGCTTCTTCGC+TGG | 0.508262 | 1_2:-57581914 | None:intergenic |
| TTTCAGGTGGGGATATCATC+TGG | 0.511463 | 1_2:+57582055 | Msa0079640:intron |
| TTGCTGAAGAATGTAAGCAT+TGG | 0.512878 | 1_2:-57580483 | None:intergenic |
| AGCACCTGTTACCGTACCTC+CGG | 0.515405 | 1_2:-57580694 | None:intergenic |
| GCATTCATGGCAGCTGCTAA+GGG | 0.522984 | 1_2:+57580311 | Msa0079640:CDS |
| TTCCGTGACATCTTTAGCAA+TGG | 0.523401 | 1_2:-57579068 | None:intergenic |
| GTTCTCACTGATCCAGCTAA+AGG | 0.528590 | 1_2:+57580413 | Msa0079640:CDS |
| AGATAACGCTCTCCAAAGCT+CGG | 0.532448 | 1_2:-57582318 | None:intergenic |
| AAGATCCAAGGTATTGGTGC+TGG | 0.533186 | 1_2:+57581462 | Msa0079640:CDS |
| TAATCCTAACCTTAATATCA+GGG | 0.533978 | 1_2:-57580740 | None:intergenic |
| TCTCAAATTTGAAGTGGGAT+GGG | 0.536307 | 1_2:+57582444 | Msa0079640:three_prime_UTR |
| TGAAGCCAGCACCAATACCT+TGG | 0.537270 | 1_2:-57581467 | None:intergenic |
| GGCACCAAAAGCGCGAAGAA+TGG | 0.537288 | 1_2:-57580384 | None:intergenic |
| TTGCTTCTCAAATTTGAAGT+GGG | 0.540219 | 1_2:+57582439 | Msa0079640:three_prime_UTR |
| GAGATCTGGAAAAGCTCTGG+TGG | 0.541486 | 1_2:+57580639 | Msa0079640:CDS |
| CGGTTCCTATACCAGAAACA+AGG | 0.542856 | 1_2:-57580674 | None:intergenic |
| TTTGCTTCTCAAATTTGAAG+TGG | 0.549353 | 1_2:+57582438 | Msa0079640:three_prime_UTR |
| GATAACGCTCTCCAAAGCTC+GGG | 0.550231 | 1_2:-57582317 | None:intergenic |
| ATACCAGTGTTTCCACTAGT+AGG | 0.551210 | 1_2:-57580281 | None:intergenic |
| CTTTGCAATCTTAATTGCAG+CGG | 0.555528 | 1_2:-57582089 | None:intergenic |
| GTTACAGTTTGTGTTTGGCA+TGG | 0.557330 | 1_2:+57582487 | Msa0079640:three_prime_UTR |
| TGGTATAGGAACCGGAGGTA+CGG | 0.570019 | 1_2:+57580683 | Msa0079640:CDS |
| CTTGCTCTAGTGTCAAAGAC+AGG | 0.573863 | 1_2:+57579324 | Msa0079640:CDS |
| AAAGTCCAGTATTGTCTGGA+GGG | 0.575979 | 1_2:+57580902 | Msa0079640:CDS |
| GTCCTCATTGAGCCTACTAG+TGG | 0.580307 | 1_2:+57580269 | Msa0079640:CDS |
| GATCCAGCTAAAGGTATGAA+AGG | 0.584953 | 1_2:+57580422 | Msa0079640:CDS |
| AATTAAGATTGCAAAGAAGC+CGG | 0.588073 | 1_2:+57582096 | Msa0079640:CDS |
| GAAGGAAAACTAACTTCTTG+CGG | 0.588318 | 1_2:-57580001 | None:intergenic |
| AGTATATCTCAACCATGTTG+TGG | 0.590226 | 1_2:+57579256 | Msa0079640:CDS |
| TGAAGTGGGATGGGAGCCAA+TGG | 0.591374 | 1_2:+57582453 | Msa0079640:three_prime_UTR |
| AACCATTGCTAAAGATGTCA+CGG | 0.593791 | 1_2:+57579066 | Msa0079640:CDS |
| GACAATACTGGACTTTCAAG+TGG | 0.596668 | 1_2:-57580895 | None:intergenic |
| AAGACTCATTGAAGCAGGCA+TGG | 0.602785 | 1_2:-57580351 | None:intergenic |
| CAAGGCCCTCATAAGATCCA+AGG | 0.604638 | 1_2:+57581450 | Msa0079640:intron |
| GTAACATGAGATGCTACCAT+TGG | 0.604856 | 1_2:-57582469 | None:intergenic |
| CAATACCTTGGATCTTATGA+GGG | 0.606155 | 1_2:-57581455 | None:intergenic |
| GGGAATTGGGACAGAGACAA+AGG | 0.606225 | 1_2:-57578890 | None:intergenic |
| TAGCATGATTGCAGATGCTG+AGG | 0.608575 | 1_2:+57579961 | Msa0079640:CDS |
| CAACACAACCATCCACAACA+TGG | 0.609088 | 1_2:-57579268 | None:intergenic |
| AAATCAACATCCAGAACACC+AGG | 0.609679 | 1_2:-57581492 | None:intergenic |
| GAAAGTCCAGTATTGTCTGG+AGG | 0.625339 | 1_2:+57580901 | Msa0079640:CDS |
| GAGCCTACTAGTGGAAACAC+TGG | 0.626296 | 1_2:+57580278 | Msa0079640:CDS |
| AGATCTGGAAAAGCTCTGGT+GGG | 0.630978 | 1_2:+57580640 | Msa0079640:CDS |
| TGAAAATCCTGCAAACCCAA+AGG | 0.632579 | 1_2:+57580508 | Msa0079640:CDS |
| TGGTTGTGTTGCACAAATTG+CGG | 0.632724 | 1_2:+57579280 | Msa0079640:CDS |
| AAAATTGCTAAATACTATGG+CGG | 0.639638 | 1_2:+57579033 | Msa0079640:exon |
| TATCTCAACCATGTTGTGGA+TGG | 0.646691 | 1_2:+57579260 | Msa0079640:CDS |
| CTGTCTTTGACACTAGAGCA+AGG | 0.647667 | 1_2:-57579323 | None:intergenic |
| TGGATCAGTGAGAACTAACT+CGG | 0.649731 | 1_2:-57580405 | None:intergenic |
| GTTTCTGGTATAGGAACCGG+AGG | 0.680508 | 1_2:+57580678 | Msa0079640:CDS |
| TTCCACTAGTAGGCTCAATG+AGG | 0.683327 | 1_2:-57580271 | None:intergenic |
| ACATGGTTGAGATATACTAG+TGG | 0.684632 | 1_2:-57579251 | None:intergenic |
| GGGACAGAGACAAAGGACAA+AGG | 0.690625 | 1_2:-57578883 | None:intergenic |
| GGTTCCTATACCAGAAACAA+GGG | 0.692573 | 1_2:-57580673 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CACTTTTTTTTTTTTTTTTT+TGG | + | chr1_2:57579124-57579143 | Msa0079640:intron | 10.0% |
| !!! | GTTTCTTTTTTTTTTTTTTT+TGG | + | chr1_2:57579781-57579800 | Msa0079640:intron | 10.0% |
| !! | GTTGATTATATAAACATATA+TGG | - | chr1_2:57579102-57579121 | None:intergenic | 15.0% |
| !!! | TATCATTTTATCTTTTTTGT+TGG | + | chr1_2:57579509-57579528 | Msa0079640:intron | 15.0% |
| !!! | ATCATTTTATCTTTTTTGTT+GGG | + | chr1_2:57579510-57579529 | Msa0079640:intron | 15.0% |
| !!! | AAATTTTAAATCGTTTACTT+AGG | + | chr1_2:57580157-57580176 | Msa0079640:intron | 15.0% |
| !!! | TAATAAAACTTTTTTCTTGT+TGG | - | chr1_2:57581309-57581328 | None:intergenic | 15.0% |
| !! | ACTTAAACTTTATTATTGAA+GGG | - | chr1_2:57581619-57581638 | None:intergenic | 15.0% |
| !! | TACTTAAACTTTATTATTGA+AGG | - | chr1_2:57581620-57581639 | None:intergenic | 15.0% |
| !! | TAATAGAATATACAAACATT+CGG | - | chr1_2:57581833-57581852 | None:intergenic | 15.0% |
| !! | ATCGTAAATATGGTAATAAA+TGG | - | chr1_2:57578944-57578963 | None:intergenic | 20.0% |
| !! | GATAAGAAATTAAATTGAAG+AGG | - | chr1_2:57578990-57579009 | None:intergenic | 20.0% |
| !! | TAGAAAATTGCTAAATACTA+TGG | + | chr1_2:57579030-57579049 | Msa0079640:intron | 20.0% |
| !! | CACTTTATATAATGATTCTA+AGG | - | chr1_2:57579427-57579446 | None:intergenic | 20.0% |
| !!! | AATGATAGAAAGATTGATTT+TGG | - | chr1_2:57579496-57579515 | None:intergenic | 20.0% |
| !!! | ATAATGAGATTGATTTCAAT+TGG | + | chr1_2:57579623-57579642 | Msa0079640:intron | 20.0% |
| !! | ATAGCAACTAAAAAACATTA+AGG | - | chr1_2:57579910-57579929 | None:intergenic | 20.0% |
| !! | TCATGAATTAAATATCAAGA+AGG | - | chr1_2:57580022-57580041 | None:intergenic | 20.0% |
| !!! | ATCTCTTATTTGATAATCAA+TGG | - | chr1_2:57580205-57580224 | None:intergenic | 20.0% |
| !! | ATTACCTTCTATAAATTTCT+AGG | + | chr1_2:57580783-57580802 | Msa0079640:intron | 20.0% |
| !!! | TTTTTTTTTCCTTAGCTATA+TGG | + | chr1_2:57580865-57580884 | Msa0079640:intron | 20.0% |
| !! | AATAGAAATAAAGGATAAGA+AGG | - | chr1_2:57580944-57580963 | None:intergenic | 20.0% |
| !!! | TTAACTTGCAATAGAAATAA+AGG | - | chr1_2:57580953-57580972 | None:intergenic | 20.0% |
| !!! | ATTTTTCTTGGAAATCAAAA+CGG | + | chr1_2:57581242-57581261 | Msa0079640:intron | 20.0% |
| !! | AGCAAAAAATTCATTTCAAA+TGG | - | chr1_2:57582424-57582443 | None:intergenic | 20.0% |
| ! | TACAACACAACATTATTTGT+TGG | + | chr1_2:57578800-57578819 | Msa0079640:five_prime_UTR | 25.0% |
| ! | AAAATTGCTAAATACTATGG+CGG | + | chr1_2:57579033-57579052 | Msa0079640:exon | 25.0% |
| !!! | TTTTGAAATGTACAGTTGAT+TGG | + | chr1_2:57579221-57579240 | Msa0079640:intron | 25.0% |
| !! | TGATTTCAATTGGTTTAAGT+TGG | + | chr1_2:57579633-57579652 | Msa0079640:intron | 25.0% |
| ! | GATTATGAGATCATTACAAT+AGG | + | chr1_2:57579661-57579680 | Msa0079640:intron | 25.0% |
| !! | CATCATGGAACATATAATTT+TGG | + | chr1_2:57579684-57579703 | Msa0079640:intron | 25.0% |
| ! | TATGAAACAGAATTAAGTCA+TGG | - | chr1_2:57579733-57579752 | None:intergenic | 25.0% |
| !! | AACATTCAGAATAGATCTTT+TGG | - | chr1_2:57579758-57579777 | None:intergenic | 25.0% |
| ! | ATAATTCTTTCATTTGATGC+AGG | + | chr1_2:57579930-57579949 | Msa0079640:intron | 25.0% |
| ! | TGAATGACTTATTCTTAATG+CGG | - | chr1_2:57580109-57580128 | None:intergenic | 25.0% |
| ! | TTTAAATCGTTTACTTAGGT+TGG | + | chr1_2:57580161-57580180 | Msa0079640:intron | 25.0% |
| ! | AATAAGAGATGAAATTCACA+AGG | + | chr1_2:57580215-57580234 | Msa0079640:intron | 25.0% |
| !!! | GTTATTTTTAGAGAATCACT+TGG | + | chr1_2:57580549-57580568 | Msa0079640:intron | 25.0% |
| ! | TAATCCTAACCTTAATATCA+GGG | - | chr1_2:57580743-57580762 | None:intergenic | 25.0% |
| ! | ATAATCCTAACCTTAATATC+AGG | - | chr1_2:57580744-57580763 | None:intergenic | 25.0% |
| !!! | GTTTTGATTTCCAAGAAAAA+TGG | - | chr1_2:57581243-57581262 | None:intergenic | 25.0% |
| !!! | ACATTGCTTTGTTATTTGAA+TGG | + | chr1_2:57581351-57581370 | Msa0079640:intron | 25.0% |
| ! | ATACTCATAAGTTAACCAAA+TGG | - | chr1_2:57581659-57581678 | None:intergenic | 25.0% |
| ! | CTACAAAAACACAAAAGTAA+GGG | - | chr1_2:57581890-57581909 | None:intergenic | 25.0% |
| ! | TCTACAAAAACACAAAAGTA+AGG | - | chr1_2:57581891-57581910 | None:intergenic | 25.0% |
| ! | AAACTTCTTGCATTAAAAGA+AGG | + | chr1_2:57581940-57581959 | Msa0079640:CDS | 25.0% |
| ! | AATAGCATATCATTCGAAAA+TGG | - | chr1_2:57582017-57582036 | None:intergenic | 25.0% |
| !! | TAAGTTTGCGTTTGAAATAA+TGG | + | chr1_2:57582599-57582618 | Msa0079640:three_prime_UTR | 25.0% |
| !! | AAGTTTGCGTTTGAAATAAT+GGG | + | chr1_2:57582600-57582619 | Msa0079640:three_prime_UTR | 25.0% |
| TTTGTACGTGTAAAAAAGGA+AGG | - | chr1_2:57578855-57578874 | None:intergenic | 30.0% | |
| GTACTTTGTACGTGTAAAAA+AGG | - | chr1_2:57578859-57578878 | None:intergenic | 30.0% | |
| CATGTAAGTGATCGTAAATA+TGG | - | chr1_2:57578954-57578973 | None:intergenic | 30.0% | |
| AGAAAATCTAGAGAATCGTA+GGG | - | chr1_2:57579559-57579578 | None:intergenic | 30.0% | |
| GACAAATGTTAGTAAGTTAG+TGG | + | chr1_2:57579807-57579826 | Msa0079640:intron | 30.0% | |
| !!! | TAGTGGTTACATTAGTTTTC+AGG | + | chr1_2:57579824-57579843 | Msa0079640:intron | 30.0% |
| !!! | AGTGGTTACATTAGTTTTCA+GGG | + | chr1_2:57579825-57579844 | Msa0079640:intron | 30.0% |
| !! | TTTTTAGAGAATCACTTGGT+TGG | + | chr1_2:57580553-57580572 | Msa0079640:intron | 30.0% |
| TTCATAGTGAACCTAAAAGT+AGG | - | chr1_2:57580607-57580626 | None:intergenic | 30.0% | |
| AAAACCCTGATATTAAGGTT+AGG | + | chr1_2:57580736-57580755 | Msa0079640:intron | 30.0% | |
| CATGCCTAGAAATTTATAGA+AGG | - | chr1_2:57580790-57580809 | None:intergenic | 30.0% | |
| TTTACAAGTACTCATGAAGT+GGG | - | chr1_2:57581153-57581172 | None:intergenic | 30.0% | |
| ! | TTTTACAAGTACTCATGAAG+TGG | - | chr1_2:57581154-57581173 | None:intergenic | 30.0% |
| CATGAGTACTTGTAAAATCA+TGG | + | chr1_2:57581157-57581176 | Msa0079640:intron | 30.0% | |
| !! | CAAGTCAATACCATTTTTCT+TGG | + | chr1_2:57581230-57581249 | Msa0079640:intron | 30.0% |
| ATAACAAAGCAAAAGTGAGA+AGG | - | chr1_2:57581284-57581303 | None:intergenic | 30.0% | |
| AAAATATCATGCGTTTGTCA+GGG | - | chr1_2:57581423-57581442 | None:intergenic | 30.0% | |
| ! | CATGATATTTTCCATGTACA+AGG | + | chr1_2:57581432-57581451 | Msa0079640:intron | 30.0% |
| TTGATGAAGTAATCCAAGTA+AGG | + | chr1_2:57581517-57581536 | Msa0079640:intron | 30.0% | |
| ! | ATTATTGAAGGGAGTACAAT+TGG | - | chr1_2:57581608-57581627 | None:intergenic | 30.0% |
| AAAAAATGTAGCTGTCCATT+TGG | + | chr1_2:57581641-57581660 | Msa0079640:intron | 30.0% | |
| ACTTACTATTCATTCATCGT+GGG | + | chr1_2:57581743-57581762 | Msa0079640:intron | 30.0% | |
| AATTAAGATTGCAAAGAAGC+CGG | + | chr1_2:57582096-57582115 | Msa0079640:CDS | 30.0% | |
| AACTCTAATATGGCCAATTA+TGG | - | chr1_2:57582230-57582249 | None:intergenic | 30.0% | |
| GAATGAGAGAAACTCTAATA+TGG | - | chr1_2:57582240-57582259 | None:intergenic | 30.0% | |
| CACTTATTCGATACATATAC+AGG | + | chr1_2:57582287-57582306 | Msa0079640:intron | 30.0% | |
| ! | ATGCTCAAAGATCATGTTTT+CGG | - | chr1_2:57582379-57582398 | None:intergenic | 30.0% |
| TTTGCTTCTCAAATTTGAAG+TGG | + | chr1_2:57582438-57582457 | Msa0079640:three_prime_UTR | 30.0% | |
| ! | TTGCTTCTCAAATTTGAAGT+GGG | + | chr1_2:57582439-57582458 | Msa0079640:three_prime_UTR | 30.0% |
| TATTCAGATGCAGATGTAAA+TGG | - | chr1_2:57582525-57582544 | None:intergenic | 30.0% | |
| TGATAGGTAGTTTGGGAATT+GGG | - | chr1_2:57578906-57578925 | None:intergenic | 35.0% | |
| TAATAAATGGCGTACGAGTT+CGG | - | chr1_2:57578931-57578950 | None:intergenic | 35.0% | |
| AACCATTGCTAAAGATGTCA+CGG | + | chr1_2:57579066-57579085 | Msa0079640:CDS | 35.0% | |
| ACATGGTTGAGATATACTAG+TGG | - | chr1_2:57579254-57579273 | None:intergenic | 35.0% | |
| AGTATATCTCAACCATGTTG+TGG | + | chr1_2:57579256-57579275 | Msa0079640:CDS | 35.0% | |
| CAGAAAATCTAGAGAATCGT+AGG | - | chr1_2:57579560-57579579 | None:intergenic | 35.0% | |
| GATCATTACAATAGGCATCA+TGG | + | chr1_2:57579669-57579688 | Msa0079640:intron | 35.0% | |
| !! | AGTTTTCAGGGATTTCACTT+TGG | + | chr1_2:57579837-57579856 | Msa0079640:intron | 35.0% |
| TCTTTCATTTGATGCAGGAT+AGG | + | chr1_2:57579935-57579954 | Msa0079640:intron | 35.0% | |
| GAAGGAAAACTAACTTCTTG+CGG | - | chr1_2:57580004-57580023 | None:intergenic | 35.0% | |
| TGGTCAAAAGAGTAAGTAGA+AGG | - | chr1_2:57580076-57580095 | None:intergenic | 35.0% | |
| !!! | TTACTTAGGTTGGTTTTGTG+TGG | + | chr1_2:57580171-57580190 | Msa0079640:intron | 35.0% |
| TGCTGAAGAATGTAAGCATT+GGG | - | chr1_2:57580485-57580504 | None:intergenic | 35.0% | |
| TTGCTGAAGAATGTAAGCAT+TGG | - | chr1_2:57580486-57580505 | None:intergenic | 35.0% | |
| TTGACACAACTAACACCTTT+GGG | - | chr1_2:57580526-57580545 | None:intergenic | 35.0% | |
| ATTGACACAACTAACACCTT+TGG | - | chr1_2:57580527-57580546 | None:intergenic | 35.0% | |
| ATAGTGAACCTAAAAGTAGG+CGG | - | chr1_2:57580604-57580623 | None:intergenic | 35.0% | |
| TAGGTTCACTATGAAACTAC+TGG | + | chr1_2:57580612-57580631 | Msa0079640:intron | 35.0% | |
| AGAGCAAAACCCTGATATTA+AGG | + | chr1_2:57580731-57580750 | Msa0079640:CDS | 35.0% | |
| ! | TTTTCCTTAGCTATATGGTG+TGG | + | chr1_2:57580870-57580889 | Msa0079640:intron | 35.0% |
| ! | CTTTTCCTCAATGTGCATTA+GGG | - | chr1_2:57580999-57581018 | None:intergenic | 35.0% |
| ! | ACTTTTCCTCAATGTGCATT+AGG | - | chr1_2:57581000-57581019 | None:intergenic | 35.0% |
| ! | AAAGTATCACCTTCACCATT+CGG | + | chr1_2:57581015-57581034 | Msa0079640:intron | 35.0% |
| ACTAGTGCATATAATCATCG+AGG | - | chr1_2:57581120-57581139 | None:intergenic | 35.0% | |
| AAATATCATGCGTTTGTCAG+GGG | - | chr1_2:57581422-57581441 | None:intergenic | 35.0% | |
| GAAAATATCATGCGTTTGTC+AGG | - | chr1_2:57581424-57581443 | None:intergenic | 35.0% | |
| CAATACCTTGGATCTTATGA+GGG | - | chr1_2:57581458-57581477 | None:intergenic | 35.0% | |
| CAAAAGATTCATGCCTTACT+TGG | - | chr1_2:57581533-57581552 | None:intergenic | 35.0% | |
| CACTTACTATTCATTCATCG+TGG | + | chr1_2:57581742-57581761 | Msa0079640:intron | 35.0% | |
| CTTACTATTCATTCATCGTG+GGG | + | chr1_2:57581744-57581763 | Msa0079640:intron | 35.0% | |
| CGCTATAGTCCATAAATAAC+TGG | + | chr1_2:57581861-57581880 | Msa0079640:intron | 35.0% | |
| TAAGGGTTGCCAGTTATTTA+TGG | - | chr1_2:57581873-57581892 | None:intergenic | 35.0% | |
| TGCATTAAAAGAAGGTTTGC+TGG | + | chr1_2:57581948-57581967 | Msa0079640:CDS | 35.0% | |
| CTTTGCAATCTTAATTGCAG+CGG | - | chr1_2:57582092-57582111 | None:intergenic | 35.0% | |
| ! | ATGAGTTTTCCAGCATTTTC+CGG | - | chr1_2:57582118-57582137 | None:intergenic | 35.0% |
| ATATCAACTGAATCATGTGC+TGG | + | chr1_2:57582201-57582220 | Msa0079640:intron | 35.0% | |
| ! | TTCTCAAATTTGAAGTGGGA+TGG | + | chr1_2:57582443-57582462 | Msa0079640:three_prime_UTR | 35.0% |
| ! | TCTCAAATTTGAAGTGGGAT+GGG | + | chr1_2:57582444-57582463 | Msa0079640:three_prime_UTR | 35.0% |
| CTCATGTTACAGTTTGTGTT+TGG | + | chr1_2:57582482-57582501 | Msa0079640:three_prime_UTR | 35.0% | |
| GTGTAAAAAAGGAAGGAGAC+TGG | - | chr1_2:57578848-57578867 | None:intergenic | 40.0% | |
| GTGATAGGTAGTTTGGGAAT+TGG | - | chr1_2:57578907-57578926 | None:intergenic | 40.0% | |
| ! | TTCGGTGTGATAGGTAGTTT+GGG | - | chr1_2:57578913-57578932 | None:intergenic | 40.0% |
| TTCCGTGACATCTTTAGCAA+TGG | - | chr1_2:57579071-57579090 | None:intergenic | 40.0% | |
| TATCTCAACCATGTTGTGGA+TGG | + | chr1_2:57579260-57579279 | Msa0079640:CDS | 40.0% | |
| TGGTTGTGTTGCACAAATTG+CGG | + | chr1_2:57579280-57579299 | Msa0079640:CDS | 40.0% | |
| AAAACATTAAGGTCCCACGT+AGG | - | chr1_2:57579899-57579918 | None:intergenic | 40.0% | |
| CTTAATGCGGCTACTAAAGT+TGG | - | chr1_2:57580096-57580115 | None:intergenic | 40.0% | |
| ATACCAGTGTTTCCACTAGT+AGG | - | chr1_2:57580284-57580303 | None:intergenic | 40.0% | |
| ACTAGTGGAAACACTGGTAT+TGG | + | chr1_2:57580284-57580303 | Msa0079640:CDS | 40.0% | |
| !! | TGGAAACACTGGTATTGGTT+TGG | + | chr1_2:57580289-57580308 | Msa0079640:CDS | 40.0% |
| !! | TGGTATTGGTTTGGCATTCA+TGG | + | chr1_2:57580298-57580317 | Msa0079640:CDS | 40.0% |
| TGGATCAGTGAGAACTAACT+CGG | - | chr1_2:57580408-57580427 | None:intergenic | 40.0% | |
| ! | GATCCAGCTAAAGGTATGAA+AGG | + | chr1_2:57580422-57580441 | Msa0079640:CDS | 40.0% |
| TGAAAATCCTGCAAACCCAA+AGG | + | chr1_2:57580508-57580527 | Msa0079640:CDS | 40.0% | |
| !! | ATTCTCTTCCGCCTACTTTT+AGG | + | chr1_2:57580593-57580612 | Msa0079640:intron | 40.0% |
| GGTTCCTATACCAGAAACAA+GGG | - | chr1_2:57580676-57580695 | None:intergenic | 40.0% | |
| !! | CTTGTTTCTGGTATAGGAAC+CGG | + | chr1_2:57580675-57580694 | Msa0079640:CDS | 40.0% |
| GACAATACTGGACTTTCAAG+TGG | - | chr1_2:57580898-57580917 | None:intergenic | 40.0% | |
| CTTGAAAGTCCAGTATTGTC+TGG | + | chr1_2:57580898-57580917 | Msa0079640:CDS | 40.0% | |
| AAAGTCCAGTATTGTCTGGA+GGG | + | chr1_2:57580902-57580921 | Msa0079640:CDS | 40.0% | |
| GATAAGAAGGAAAACTCACC+AGG | - | chr1_2:57580931-57580950 | None:intergenic | 40.0% | |
| AAGTTCCCTAATGCACATTG+AGG | + | chr1_2:57580991-57581010 | Msa0079640:intron | 40.0% | |
| AAGTATCACCTTCACCATTC+GGG | + | chr1_2:57581016-57581035 | Msa0079640:intron | 40.0% | |
| TGACAGTTTATTTGCCTCGA+TGG | + | chr1_2:57581059-57581078 | Msa0079640:intron | 40.0% | |
| TTTGCACATTTGATCCATCG+AGG | - | chr1_2:57581076-57581095 | None:intergenic | 40.0% | |
| CATGGATTCTGATTTCTCTG+TGG | + | chr1_2:57581175-57581194 | Msa0079640:intron | 40.0% | |
| GGGGAATGATACATAGAAGA+GGG | - | chr1_2:57581403-57581422 | None:intergenic | 40.0% | |
| AGGGGAATGATACATAGAAG+AGG | - | chr1_2:57581404-57581423 | None:intergenic | 40.0% | |
| CCAATACCTTGGATCTTATG+AGG | - | chr1_2:57581459-57581478 | None:intergenic | 40.0% | |
| CCTCATAAGATCCAAGGTAT+TGG | + | chr1_2:57581456-57581475 | Msa0079640:CDS | 40.0% | |
| AAATCAACATCCAGAACACC+AGG | - | chr1_2:57581495-57581514 | None:intergenic | 40.0% | |
| !!! | GTCTTTTTTCCCTCTCTTCT+TGG | + | chr1_2:57581694-57581713 | Msa0079640:intron | 40.0% |
| GTGCGTGAATTTGCATAATG+TGG | - | chr1_2:57581725-57581744 | None:intergenic | 40.0% | |
| AGTTTCAATAGCTTCTTCGC+TGG | - | chr1_2:57581917-57581936 | None:intergenic | 40.0% | |
| TACCACTGAACTTGTGTTTC+AGG | + | chr1_2:57582039-57582058 | Msa0079640:intron | 40.0% | |
| ! | ACTGAACTTGTGTTTCAGGT+GGG | + | chr1_2:57582043-57582062 | Msa0079640:intron | 40.0% |
| GTAACATGAGATGCTACCAT+TGG | - | chr1_2:57582472-57582491 | None:intergenic | 40.0% | |
| GTTACAGTTTGTGTTTGGCA+TGG | + | chr1_2:57582487-57582506 | Msa0079640:three_prime_UTR | 40.0% | |
| !! | GTTCGGTGTGATAGGTAGTT+TGG | - | chr1_2:57578914-57578933 | None:intergenic | 45.0% |
| CAACACAACCATCCACAACA+TGG | - | chr1_2:57579271-57579290 | None:intergenic | 45.0% | |
| TGCGGCAAAGCTAGAAATGA+TGG | + | chr1_2:57579298-57579317 | Msa0079640:CDS | 45.0% | |
| CTGTCTTTGACACTAGAGCA+AGG | - | chr1_2:57579326-57579345 | None:intergenic | 45.0% | |
| CTTGCTCTAGTGTCAAAGAC+AGG | + | chr1_2:57579324-57579343 | Msa0079640:CDS | 45.0% | |
| ACCAACCAAACTACCTACGT+GGG | + | chr1_2:57579883-57579902 | Msa0079640:intron | 45.0% | |
| TAGCATGATTGCAGATGCTG+AGG | + | chr1_2:57579961-57579980 | Msa0079640:CDS | 45.0% | |
| ATTGCAGATGCTGAGGAGAA+AGG | + | chr1_2:57579968-57579987 | Msa0079640:CDS | 45.0% | |
| TTCCACTAGTAGGCTCAATG+AGG | - | chr1_2:57580274-57580293 | None:intergenic | 45.0% | |
| AAGACTCATTGAAGCAGGCA+TGG | - | chr1_2:57580354-57580373 | None:intergenic | 45.0% | |
| CTCTCAAGACTCATTGAAGC+AGG | - | chr1_2:57580359-57580378 | None:intergenic | 45.0% | |
| ! | AGAACCATTCTTCGCGCTTT+TGG | + | chr1_2:57580380-57580399 | Msa0079640:CDS | 45.0% |
| GTTCTCACTGATCCAGCTAA+AGG | + | chr1_2:57580413-57580432 | Msa0079640:CDS | 45.0% | |
| GCTCCTTTCATACCTTTAGC+TGG | - | chr1_2:57580428-57580447 | None:intergenic | 45.0% | |
| ! | ACTAACACCTTTGGGTTTGC+AGG | - | chr1_2:57580518-57580537 | None:intergenic | 45.0% |
| AAACTACTGGACCAGAGATC+TGG | + | chr1_2:57580625-57580644 | Msa0079640:CDS | 45.0% | |
| ! | AGATCTGGAAAAGCTCTGGT+GGG | + | chr1_2:57580640-57580659 | Msa0079640:CDS | 45.0% |
| !! | AGAGTTGATGCCCTTGTTTC+TGG | + | chr1_2:57580663-57580682 | Msa0079640:CDS | 45.0% |
| !! | GATGCCCTTGTTTCTGGTAT+AGG | + | chr1_2:57580669-57580688 | Msa0079640:CDS | 45.0% |
| CGGTTCCTATACCAGAAACA+AGG | - | chr1_2:57580677-57580696 | None:intergenic | 45.0% | |
| GGTTCCACACCATATAGCTA+AGG | - | chr1_2:57580877-57580896 | None:intergenic | 45.0% | |
| GAAAGTCCAGTATTGTCTGG+AGG | + | chr1_2:57580901-57580920 | Msa0079640:CDS | 45.0% | |
| AGTATCACCTTCACCATTCG+GGG | + | chr1_2:57581017-57581036 | Msa0079640:intron | 45.0% | |
| ! | TCTTATGAGGGCCTTGTACA+TGG | - | chr1_2:57581446-57581465 | None:intergenic | 45.0% |
| !! | AAGATCCAAGGTATTGGTGC+TGG | + | chr1_2:57581462-57581481 | Msa0079640:CDS | 45.0% |
| TCATTCATCGTGGGGAAAGA+TGG | + | chr1_2:57581752-57581771 | Msa0079640:intron | 45.0% | |
| CACCTGAAACACAAGTTCAG+TGG | - | chr1_2:57582044-57582063 | None:intergenic | 45.0% | |
| CACTGAACTTGTGTTTCAGG+TGG | + | chr1_2:57582042-57582061 | Msa0079640:intron | 45.0% | |
| ! | CTGAACTTGTGTTTCAGGTG+GGG | + | chr1_2:57582044-57582063 | Msa0079640:intron | 45.0% |
| ! | TTTCAGGTGGGGATATCATC+TGG | + | chr1_2:57582055-57582074 | Msa0079640:intron | 45.0% |
| AATCTTAATTGCAGCGGCTG+CGG | - | chr1_2:57582086-57582105 | None:intergenic | 45.0% | |
| CATGTGCTGGAGTCCATAAT+TGG | + | chr1_2:57582214-57582233 | Msa0079640:intron | 45.0% | |
| AGATAACGCTCTCCAAAGCT+CGG | - | chr1_2:57582321-57582340 | None:intergenic | 45.0% | |
| !!! | TTTCTTTTTTTTTTTTTTTT+GGG | + | chr1_2:57579782-57579801 | Msa0079640:intron | 5.0% |
| !!! | TTTTTTATATAAAAATATGA+TGG | + | chr1_2:57581581-57581600 | Msa0079640:intron | 5.0% |
| GGGACAGAGACAAAGGACAA+AGG | - | chr1_2:57578886-57578905 | None:intergenic | 50.0% | |
| GGGAATTGGGACAGAGACAA+AGG | - | chr1_2:57578893-57578912 | None:intergenic | 50.0% | |
| ! | GTTGGTGAGCTAACAGACAC+TGG | - | chr1_2:57579869-57579888 | None:intergenic | 50.0% |
| CACCAACCAAACTACCTACG+TGG | + | chr1_2:57579882-57579901 | Msa0079640:intron | 50.0% | |
| TCCCACGTAGGTAGTTTGGT+TGG | - | chr1_2:57579887-57579906 | None:intergenic | 50.0% | |
| AAGGTCCCACGTAGGTAGTT+TGG | - | chr1_2:57579891-57579910 | None:intergenic | 50.0% | |
| GTCCTCATTGAGCCTACTAG+TGG | + | chr1_2:57580269-57580288 | Msa0079640:CDS | 50.0% | |
| GAGCCTACTAGTGGAAACAC+TGG | + | chr1_2:57580278-57580297 | Msa0079640:CDS | 50.0% | |
| GCATTCATGGCAGCTGCTAA+GGG | + | chr1_2:57580311-57580330 | Msa0079640:CDS | 50.0% | |
| GTAGGCGGAAGAGAATGAGT+TGG | - | chr1_2:57580589-57580608 | None:intergenic | 50.0% | |
| ! | CCAGAGCTTTTCCAGATCTC+TGG | - | chr1_2:57580639-57580658 | None:intergenic | 50.0% |
| CCAGAGATCTGGAAAAGCTC+TGG | + | chr1_2:57580636-57580655 | Msa0079640:CDS | 50.0% | |
| ! | GAGATCTGGAAAAGCTCTGG+TGG | + | chr1_2:57580639-57580658 | Msa0079640:CDS | 50.0% |
| !! | GTTTCTGGTATAGGAACCGG+AGG | + | chr1_2:57580678-57580697 | Msa0079640:CDS | 50.0% |
| TGGTATAGGAACCGGAGGTA+CGG | + | chr1_2:57580683-57580702 | Msa0079640:CDS | 50.0% | |
| GGTTTCCCTCCAGACAATAC+TGG | - | chr1_2:57580910-57580929 | None:intergenic | 50.0% | |
| GTATTGTCTGGAGGGAAACC+TGG | + | chr1_2:57580910-57580929 | Msa0079640:CDS | 50.0% | |
| AATGACTCCCCGAATGGTGA+AGG | - | chr1_2:57581027-57581046 | None:intergenic | 50.0% | |
| GACATGAATGACTCCCCGAA+TGG | - | chr1_2:57581033-57581052 | None:intergenic | 50.0% | |
| CAAGGCCCTCATAAGATCCA+AGG | + | chr1_2:57581450-57581469 | Msa0079640:intron | 50.0% | |
| TGAAGCCAGCACCAATACCT+TGG | - | chr1_2:57581470-57581489 | None:intergenic | 50.0% | |
| !! | ATTGGTGCTGGCTTCATTCC+TGG | + | chr1_2:57581474-57581493 | Msa0079640:CDS | 50.0% |
| TGGCTTCATTCCTGGTGTTC+TGG | + | chr1_2:57581482-57581501 | Msa0079640:CDS | 50.0% | |
| GCAAAGAAGCCGGAAAATGC+TGG | + | chr1_2:57582106-57582125 | Msa0079640:CDS | 50.0% | |
| !! | CAGGTTGTTTTCCCGAGCTT+TGG | + | chr1_2:57582306-57582325 | Msa0079640:intron | 50.0% |
| GATAACGCTCTCCAAAGCTC+GGG | - | chr1_2:57582320-57582339 | None:intergenic | 50.0% | |
| !! | GCGTACGAGTTCGGTGTGAT+AGG | - | chr1_2:57578922-57578941 | None:intergenic | 55.0% |
| GGCATTCATGGCAGCTGCTA+AGG | + | chr1_2:57580310-57580329 | Msa0079640:CDS | 55.0% | |
| ! | GGCACCAAAAGCGCGAAGAA+TGG | - | chr1_2:57580387-57580406 | None:intergenic | 55.0% |
| AGCACCTGTTACCGTACCTC+CGG | - | chr1_2:57580697-57580716 | None:intergenic | 55.0% | |
| GTGGCGTCACCAAGAAGAGA+GGG | - | chr1_2:57581706-57581725 | None:intergenic | 55.0% | |
| TGTGGCGTCACCAAGAAGAG+AGG | - | chr1_2:57581707-57581726 | None:intergenic | 55.0% | |
| TGAAGTGGGATGGGAGCCAA+TGG | + | chr1_2:57582453-57582472 | Msa0079640:three_prime_UTR | 55.0% | |
| ! | GGAACCGGAGGTACGGTAAC+AGG | + | chr1_2:57580690-57580709 | Msa0079640:CDS | 60.0% |
| ! | GGAGGTACGGTAACAGGTGC+TGG | + | chr1_2:57580696-57580715 | Msa0079640:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 57578788 | 57582641 | 57578788 | ID=Msa0079640;Name=Msa0079640 |
| chr1_2 | mRNA | 57578788 | 57582641 | 57578788 | ID=Msa0079640-mRNA-1;Parent=Msa0079640;Name=Msa0079640-mRNA-1;_AED=0.35;_eAED=0.35;_QI=164|1|1|1|0.9|0.90|11|240|325 |
| chr1_2 | exon | 57578788 | 57578935 | 57578788 | ID=Msa0079640-mRNA-1:exon:18242;Parent=Msa0079640-mRNA-1 |
| chr1_2 | exon | 57579033 | 57579090 | 57579033 | ID=Msa0079640-mRNA-1:exon:18243;Parent=Msa0079640-mRNA-1 |
| chr1_2 | exon | 57579236 | 57579345 | 57579236 | ID=Msa0079640-mRNA-1:exon:18244;Parent=Msa0079640-mRNA-1 |
| chr1_2 | exon | 57579952 | 57580009 | 57579952 | ID=Msa0079640-mRNA-1:exon:18245;Parent=Msa0079640-mRNA-1 |
| chr1_2 | exon | 57580266 | 57580529 | 57580266 | ID=Msa0079640-mRNA-1:exon:18246;Parent=Msa0079640-mRNA-1 |
| chr1_2 | exon | 57580615 | 57580752 | 57580615 | ID=Msa0079640-mRNA-1:exon:18247;Parent=Msa0079640-mRNA-1 |
| chr1_2 | exon | 57580880 | 57580931 | 57580880 | ID=Msa0079640-mRNA-1:exon:18248;Parent=Msa0079640-mRNA-1 |
| chr1_2 | exon | 57581454 | 57581533 | 57581454 | ID=Msa0079640-mRNA-1:exon:18249;Parent=Msa0079640-mRNA-1 |
| chr1_2 | exon | 57581910 | 57581969 | 57581910 | ID=Msa0079640-mRNA-1:exon:18250;Parent=Msa0079640-mRNA-1 |
| chr1_2 | exon | 57582061 | 57582141 | 57582061 | ID=Msa0079640-mRNA-1:exon:18251;Parent=Msa0079640-mRNA-1 |
| chr1_2 | exon | 57582309 | 57582641 | 57582309 | ID=Msa0079640-mRNA-1:exon:18252;Parent=Msa0079640-mRNA-1 |
| chr1_2 | five_prime_UTR | 57578788 | 57578935 | 57578788 | ID=Msa0079640-mRNA-1:five_prime_utr;Parent=Msa0079640-mRNA-1 |
| chr1_2 | five_prime_UTR | 57579033 | 57579048 | 57579033 | ID=Msa0079640-mRNA-1:five_prime_utr;Parent=Msa0079640-mRNA-1 |
| chr1_2 | CDS | 57579049 | 57579090 | 57579049 | ID=Msa0079640-mRNA-1:cds;Parent=Msa0079640-mRNA-1 |
| chr1_2 | CDS | 57579236 | 57579345 | 57579236 | ID=Msa0079640-mRNA-1:cds;Parent=Msa0079640-mRNA-1 |
| chr1_2 | CDS | 57579952 | 57580009 | 57579952 | ID=Msa0079640-mRNA-1:cds;Parent=Msa0079640-mRNA-1 |
| chr1_2 | CDS | 57580266 | 57580529 | 57580266 | ID=Msa0079640-mRNA-1:cds;Parent=Msa0079640-mRNA-1 |
| chr1_2 | CDS | 57580615 | 57580752 | 57580615 | ID=Msa0079640-mRNA-1:cds;Parent=Msa0079640-mRNA-1 |
| chr1_2 | CDS | 57580880 | 57580931 | 57580880 | ID=Msa0079640-mRNA-1:cds;Parent=Msa0079640-mRNA-1 |
| chr1_2 | CDS | 57581454 | 57581533 | 57581454 | ID=Msa0079640-mRNA-1:cds;Parent=Msa0079640-mRNA-1 |
| chr1_2 | CDS | 57581910 | 57581969 | 57581910 | ID=Msa0079640-mRNA-1:cds;Parent=Msa0079640-mRNA-1 |
| chr1_2 | CDS | 57582061 | 57582141 | 57582061 | ID=Msa0079640-mRNA-1:cds;Parent=Msa0079640-mRNA-1 |
| chr1_2 | CDS | 57582309 | 57582401 | 57582309 | ID=Msa0079640-mRNA-1:cds;Parent=Msa0079640-mRNA-1 |
| chr1_2 | three_prime_UTR | 57582402 | 57582641 | 57582402 | ID=Msa0079640-mRNA-1:three_prime_utr;Parent=Msa0079640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
