Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0042420 | sp|Q43317|CYSK_CITLA | 89.198 | 324 | 35 | 0 | 1 | 324 | 1 | 324 | 0.0 | 548 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042420 | Msa0079640 | 0.807918 | 3.996880e-50 | -8.615850e-47 |
| Msa0042420 | Msa0179270 | 0.925349 | 2.068657e-90 | -8.615850e-47 |
| Msa0042420 | Msa0306000 | 0.803439 | 3.483668e-49 | -8.615850e-47 |
| Msa0042420 | Msa0370860 | 0.807961 | 3.914363e-50 | -8.615850e-47 |
| Msa0042420 | Msa0389900 | 0.837769 | 4.275784e-57 | -8.615850e-47 |
| Msa0042420 | Msa0419060 | 0.812782 | 3.564514e-51 | -8.615850e-47 |
| Msa0042420 | Msa0510570 | 0.812245 | 4.670458e-51 | -8.615850e-47 |
| Msa0042420 | Msa0545050 | 0.803845 | 2.870200e-49 | -8.615850e-47 |
| Msa0042420 | Msa0600590 | 0.802847 | 4.620548e-49 | -8.615850e-47 |
| Msa0042420 | Msa0641130 | 0.814548 | 1.456733e-51 | -8.615850e-47 |
| Msa0042420 | Msa0787790 | 0.810049 | 1.398049e-50 | -8.615850e-47 |
| Msa0042420 | Msa0803520 | 0.811376 | 7.222930e-51 | -8.615850e-47 |
| Msa0042420 | Msa0824930 | 0.800072 | 1.711050e-48 | -8.615850e-47 |
| Msa0042420 | Msa0830030 | 0.805079 | 1.587549e-49 | -8.615850e-47 |
| Msa0042420 | Msa0863990 | 0.808930 | 2.431627e-50 | -8.615850e-47 |
| Msa0042420 | Msa1016960 | 0.820553 | 6.455117e-53 | -8.615850e-47 |
| Msa0042420 | Msa1058200 | 0.802143 | 6.453552e-49 | -8.615850e-47 |
| Msa0042420 | Msa1069890 | 0.818107 | 2.328902e-52 | -8.615850e-47 |
| Msa0042420 | Msa1119920 | 0.826309 | 2.911045e-54 | -8.615850e-47 |
| Msa0042420 | Msa1256060 | 0.819669 | 1.028670e-52 | -8.615850e-47 |
| Msa0042420 | Msa1260680 | 0.803749 | 3.004998e-49 | -8.615850e-47 |
| Msa0042420 | Msa1460420 | 0.850522 | 1.608452e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0042420 | MtrunA17_Chr1g0191041 | 97.538 | 325 | 8 | 0 | 1 | 325 | 1 | 325 | 0.0 | 638 |
| Msa0042420 | MtrunA17_Chr5g0394491 | 88.272 | 324 | 38 | 0 | 1 | 324 | 1 | 324 | 0.0 | 532 |
| Msa0042420 | MtrunA17_Chr1g0205381 | 87.346 | 324 | 41 | 0 | 1 | 324 | 1 | 324 | 0.0 | 529 |
| Msa0042420 | MtrunA17_Chr4g0045721 | 69.688 | 320 | 97 | 0 | 2 | 321 | 41 | 360 | 1.11e-168 | 473 |
| Msa0042420 | MtrunA17_Chr1g0191051 | 74.534 | 322 | 82 | 0 | 3 | 324 | 2 | 323 | 2.50e-168 | 471 |
| Msa0042420 | MtrunA17_Chr4g0045781 | 73.567 | 314 | 83 | 0 | 8 | 321 | 66 | 379 | 3.69e-161 | 454 |
| Msa0042420 | MtrunA17_Chr4g0045771 | 65.625 | 320 | 101 | 2 | 2 | 321 | 41 | 351 | 8.73e-156 | 440 |
| Msa0042420 | MtrunA17_Chr1g0191061 | 64.067 | 359 | 83 | 2 | 12 | 324 | 25 | 383 | 1.69e-149 | 425 |
| Msa0042420 | MtrunA17_Chr7g0248021 | 63.291 | 316 | 116 | 0 | 6 | 321 | 59 | 374 | 1.28e-145 | 415 |
| Msa0042420 | MtrunA17_Chr7g0254401 | 62.579 | 318 | 109 | 1 | 4 | 321 | 61 | 368 | 8.50e-136 | 390 |
| Msa0042420 | MtrunA17_Chr1g0191071 | 68.401 | 269 | 80 | 1 | 56 | 324 | 1 | 264 | 1.51e-115 | 334 |
| Msa0042420 | MtrunA17_Chr5g0446431 | 29.178 | 353 | 191 | 6 | 12 | 307 | 48 | 398 | 2.87e-41 | 148 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0042420 | AT4G14880.5 | 80.251 | 319 | 63 | 0 | 6 | 324 | 3 | 321 | 1.18e-180 | 502 |
| Msa0042420 | AT4G14880.3 | 80.251 | 319 | 63 | 0 | 6 | 324 | 3 | 321 | 1.18e-180 | 502 |
| Msa0042420 | AT4G14880.4 | 80.251 | 319 | 63 | 0 | 6 | 324 | 3 | 321 | 1.18e-180 | 502 |
| Msa0042420 | AT4G14880.2 | 80.251 | 319 | 63 | 0 | 6 | 324 | 3 | 321 | 1.18e-180 | 502 |
| Msa0042420 | AT4G14880.1 | 80.251 | 319 | 63 | 0 | 6 | 324 | 3 | 321 | 1.18e-180 | 502 |
| Msa0042420 | AT3G59760.1 | 74.528 | 318 | 81 | 0 | 4 | 321 | 109 | 426 | 2.11e-165 | 468 |
| Msa0042420 | AT3G59760.3 | 74.528 | 318 | 81 | 0 | 4 | 321 | 109 | 426 | 2.34e-165 | 468 |
| Msa0042420 | AT2G43750.1 | 74.921 | 315 | 79 | 0 | 7 | 321 | 74 | 388 | 2.59e-165 | 466 |
| Msa0042420 | AT2G43750.2 | 74.921 | 315 | 79 | 0 | 7 | 321 | 74 | 388 | 2.59e-165 | 466 |
| Msa0042420 | AT3G04940.1 | 70.405 | 321 | 95 | 0 | 1 | 321 | 1 | 321 | 4.04e-159 | 447 |
| Msa0042420 | AT3G04940.2 | 70.405 | 321 | 95 | 0 | 1 | 321 | 1 | 321 | 4.04e-159 | 447 |
| Msa0042420 | AT5G28020.2 | 72.050 | 322 | 90 | 0 | 3 | 324 | 2 | 323 | 7.57e-158 | 444 |
| Msa0042420 | AT5G28020.4 | 72.050 | 322 | 90 | 0 | 3 | 324 | 2 | 323 | 7.57e-158 | 444 |
| Msa0042420 | AT5G28020.1 | 72.050 | 322 | 90 | 0 | 3 | 324 | 2 | 323 | 7.57e-158 | 444 |
| Msa0042420 | AT5G28020.3 | 72.050 | 322 | 90 | 0 | 3 | 324 | 2 | 323 | 7.57e-158 | 444 |
| Msa0042420 | AT5G28020.6 | 72.050 | 322 | 90 | 0 | 3 | 324 | 2 | 323 | 7.57e-158 | 444 |
| Msa0042420 | AT3G59760.2 | 70.370 | 324 | 94 | 2 | 4 | 325 | 109 | 432 | 5.65e-151 | 431 |
| Msa0042420 | AT5G28030.1 | 69.565 | 322 | 98 | 0 | 3 | 324 | 2 | 323 | 7.05e-148 | 419 |
| Msa0042420 | AT5G28030.4 | 69.565 | 322 | 98 | 0 | 3 | 324 | 2 | 323 | 7.05e-148 | 419 |
| Msa0042420 | AT5G28030.5 | 69.565 | 322 | 98 | 0 | 3 | 324 | 2 | 323 | 7.05e-148 | 419 |
| Msa0042420 | AT5G28030.2 | 69.565 | 322 | 98 | 0 | 3 | 324 | 2 | 323 | 7.05e-148 | 419 |
| Msa0042420 | AT3G22460.1 | 76.952 | 269 | 42 | 1 | 56 | 324 | 1 | 249 | 2.34e-146 | 412 |
| Msa0042420 | AT3G61440.1 | 61.538 | 312 | 120 | 0 | 10 | 321 | 51 | 362 | 2.90e-136 | 391 |
| Msa0042420 | AT3G03630.1 | 63.291 | 316 | 106 | 1 | 8 | 323 | 99 | 404 | 1.25e-132 | 383 |
| Msa0042420 | AT3G61440.2 | 63.158 | 266 | 98 | 0 | 56 | 321 | 1 | 266 | 1.60e-117 | 340 |
| Msa0042420 | AT5G28030.3 | 67.871 | 249 | 80 | 0 | 3 | 251 | 2 | 250 | 2.90e-113 | 329 |
| Msa0042420 | AT3G22460.2 | 83.511 | 188 | 31 | 0 | 1 | 188 | 1 | 188 | 1.11e-112 | 325 |
| Msa0042420 | AT3G61440.4 | 59.924 | 262 | 105 | 0 | 10 | 271 | 51 | 312 | 1.03e-109 | 323 |
| Msa0042420 | AT5G28020.5 | 70.042 | 237 | 71 | 0 | 88 | 324 | 1 | 237 | 3.65e-105 | 307 |
| Msa0042420 | AT3G61440.3 | 62.500 | 240 | 90 | 0 | 82 | 321 | 2 | 241 | 6.33e-105 | 307 |
| Msa0042420 | AT1G55880.1 | 28.099 | 363 | 201 | 8 | 3 | 307 | 35 | 395 | 1.59e-36 | 136 |
| Msa0042420 | AT1G55880.2 | 29.719 | 249 | 133 | 5 | 3 | 210 | 35 | 282 | 9.54e-30 | 116 |
Find 97 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGTTGATGCCCTTGTTTC+TGG | 0.184437 | 1_1:-73273464 | Msa0042420:CDS |
| TTGTCATAAGTTTGAAATAA+TGG | 0.200774 | 1_1:-73271535 | Msa0042420:three_prime_UTR |
| TAGAAAATTGCTAAATACTA+TGG | 0.267447 | 1_1:-73275099 | Msa0042420:exon |
| TGGCTTCATTCCTGGTGTTC+TGG | 0.280161 | 1_1:-73272646 | Msa0042420:CDS |
| ACTAACACCTTTGGGTTTGC+AGG | 0.288673 | 1_1:+73273612 | None:intergenic |
| TATTCAGATGCAGATGTAAA+TGG | 0.295214 | 1_1:+73271606 | None:intergenic |
| ATTGGTGCTGGCTTCATTCC+TGG | 0.295467 | 1_1:-73272654 | Msa0042420:CDS |
| AGAACCATTCTTCGCGCTTT+TGG | 0.297151 | 1_1:-73273747 | Msa0042420:CDS |
| ATAATCCTAACATTAATATC+AGG | 0.298494 | 1_1:+73273386 | None:intergenic |
| TGTCATAAGTTTGAAATAAT+GGG | 0.317444 | 1_1:-73271534 | Msa0042420:three_prime_UTR |
| GTTCGGTGTGATAGGTAGTT+TGG | 0.317527 | 1_1:+73275220 | None:intergenic |
| TGCATTAAAAGAAGGTTTGC+TGG | 0.326558 | 1_1:-73272180 | Msa0042420:intron |
| GGCATTCATGGCAGCTGCTA+AGG | 0.329627 | 1_1:-73273817 | Msa0042420:CDS |
| TGATAGGTAGTTTGGGAATT+GGG | 0.337712 | 1_1:+73275228 | None:intergenic |
| TGGTATTGGTTTGGCATTCA+TGG | 0.343061 | 1_1:-73273829 | Msa0042420:CDS |
| GATGCCCTTGTTTCTGGTAT+AGG | 0.346426 | 1_1:-73273458 | Msa0042420:CDS |
| CTCATGTTACAGTTTGTGTT+TGG | 0.354810 | 1_1:-73271646 | Msa0042420:three_prime_UTR |
| GTGATAGGTAGTTTGGGAAT+TGG | 0.379220 | 1_1:+73275227 | None:intergenic |
| TACAACACAACATTATTTGT+TGG | 0.392246 | 1_1:-73275331 | Msa0042420:five_prime_UTR |
| GCGTACGAGTTCGGTGTGAT+AGG | 0.401469 | 1_1:+73275212 | None:intergenic |
| GGAACCGGAGGTACGGTAAC+AGG | 0.406043 | 1_1:-73273437 | Msa0042420:CDS |
| CTTGTTTCTGGTATAGGAAC+CGG | 0.413375 | 1_1:-73273452 | Msa0042420:CDS |
| TAGGTTCACTATGAAACTAC+TGG | 0.414969 | 1_1:-73273515 | Msa0042420:CDS |
| AAACTTCTTGCATTAAAAGA+AGG | 0.415012 | 1_1:-73272188 | Msa0042420:CDS |
| CCAATACCTTGGATCTTATG+AGG | 0.417262 | 1_1:+73272672 | None:intergenic |
| GGTTTCCCTCCAGACAATAC+TGG | 0.417936 | 1_1:+73273221 | None:intergenic |
| TTCGGTGTGATAGGTAGTTT+GGG | 0.421038 | 1_1:+73275221 | None:intergenic |
| AAACTACTGGACCAGAGATC+TGG | 0.427472 | 1_1:-73273502 | Msa0042420:CDS |
| ATACTAATGGCGTACGAGTT+CGG | 0.434133 | 1_1:+73275203 | None:intergenic |
| GCTCCTTTCATACCTTTAGC+TGG | 0.435185 | 1_1:+73273702 | None:intergenic |
| TGCTGAAGAATGTAAGCATT+GGG | 0.439335 | 1_1:+73273645 | None:intergenic |
| ACTAGTGGAAACACTGGTAT+TGG | 0.441486 | 1_1:-73273843 | Msa0042420:CDS |
| TGGAAACACTGGTATTGGTT+TGG | 0.446534 | 1_1:-73273838 | Msa0042420:CDS |
| TTCTCAAATTTGAAGTGGGA+TGG | 0.475311 | 1_1:-73271685 | Msa0042420:three_prime_UTR |
| GCAAAGAAGCCGGAAAATGC+TGG | 0.482832 | 1_1:-73272022 | Msa0042420:CDS |
| CTTGAAAGTCCAGTATTGTC+TGG | 0.488243 | 1_1:-73273230 | Msa0042420:CDS |
| CTCTCAAGACTCATTGAAGC+AGG | 0.492620 | 1_1:+73273771 | None:intergenic |
| GGAGGTACGGTAACAGGTGC+TGG | 0.494965 | 1_1:-73273431 | Msa0042420:CDS |
| CCAGAGATCTGGAAAAGCTC+TGG | 0.501405 | 1_1:-73273491 | Msa0042420:CDS |
| TGCGGCAAAGCTAGAAATGA+TGG | 0.501879 | 1_1:-73274833 | Msa0042420:CDS |
| ATTGCAGATGCTGAGGAGAA+AGG | 0.503285 | 1_1:-73274159 | Msa0042420:CDS |
| CCTCATAAGATCCAAGGTAT+TGG | 0.505205 | 1_1:-73272672 | Msa0042420:CDS |
| GTATTGTCTGGAGGGAAACC+TGG | 0.505854 | 1_1:-73273218 | Msa0042420:intron |
| AGTTTCAATAGCTTCTTCGC+TGG | 0.508262 | 1_1:+73272214 | None:intergenic |
| TTTCAGGTGGGGATATCATC+TGG | 0.511463 | 1_1:-73272073 | Msa0042420:intron |
| TTGCTGAAGAATGTAAGCAT+TGG | 0.512878 | 1_1:+73273644 | None:intergenic |
| AGCACCTGTTACCGTACCTC+CGG | 0.515405 | 1_1:+73273433 | None:intergenic |
| GCATTCATGGCAGCTGCTAA+GGG | 0.522984 | 1_1:-73273816 | Msa0042420:CDS |
| TTCCGTGACATCTTTAGCAA+TGG | 0.523401 | 1_1:+73275061 | None:intergenic |
| GTTCTCACTGATCCAGCTAA+AGG | 0.528590 | 1_1:-73273714 | Msa0042420:CDS |
| AGATAACGCTCTCCAAAGCT+CGG | 0.532448 | 1_1:+73271810 | None:intergenic |
| AAGATCCAAGGTATTGGTGC+TGG | 0.533186 | 1_1:-73272666 | Msa0042420:CDS |
| TCTCAAATTTGAAGTGGGAT+GGG | 0.536307 | 1_1:-73271684 | Msa0042420:three_prime_UTR |
| TAATCCTAACATTAATATCA+GGG | 0.536461 | 1_1:+73273387 | None:intergenic |
| TGAAGCCAGCACCAATACCT+TGG | 0.537270 | 1_1:+73272661 | None:intergenic |
| GGCACCAAAAGCGCGAAGAA+TGG | 0.537288 | 1_1:+73273743 | None:intergenic |
| TTGCTTCTCAAATTTGAAGT+GGG | 0.540219 | 1_1:-73271689 | Msa0042420:three_prime_UTR |
| GAGATCTGGAAAAGCTCTGG+TGG | 0.541486 | 1_1:-73273488 | Msa0042420:CDS |
| CGGTTCCTATACCAGAAACA+AGG | 0.542856 | 1_1:+73273453 | None:intergenic |
| TTTGCTTCTCAAATTTGAAG+TGG | 0.549353 | 1_1:-73271690 | Msa0042420:three_prime_UTR |
| GATAACGCTCTCCAAAGCTC+GGG | 0.550231 | 1_1:+73271811 | None:intergenic |
| ATACCAGTGTTTCCACTAGT+AGG | 0.551210 | 1_1:+73273846 | None:intergenic |
| TGGTATAGGAACCGGAGGTA+CGG | 0.570019 | 1_1:-73273444 | Msa0042420:CDS |
| CTTGCTCTAGTGTCAAAGAC+AGG | 0.573863 | 1_1:-73274807 | Msa0042420:intron |
| AAAGTCCAGTATTGTCTGGA+GGG | 0.575979 | 1_1:-73273226 | Msa0042420:CDS |
| AATCTTAATTGCAGCTGCTG+CGG | 0.576543 | 1_1:+73272045 | None:intergenic |
| GTCCTCATTGAGCCTACTAG+TGG | 0.580307 | 1_1:-73273858 | Msa0042420:CDS |
| GATCCAGCTAAAGGTATGAA+AGG | 0.584953 | 1_1:-73273705 | Msa0042420:CDS |
| AATTAAGATTGCAAAGAAGC+CGG | 0.588073 | 1_1:-73272032 | Msa0042420:CDS |
| GAAGGAAAACTAACTTCTTG+CGG | 0.588318 | 1_1:+73274126 | None:intergenic |
| AGTATATCTCAACCATGTTG+TGG | 0.590226 | 1_1:-73274875 | Msa0042420:CDS |
| TGAAGTGGGATGGGAGCCAA+TGG | 0.591374 | 1_1:-73271675 | Msa0042420:three_prime_UTR |
| AGCTGTTCAGAAAGCTGAAG+AGG | 0.591893 | 1_1:-73273682 | Msa0042420:CDS |
| AACCATTGCTAAAGATGTCA+CGG | 0.593791 | 1_1:-73275063 | Msa0042420:CDS |
| GACAATACTGGACTTTCAAG+TGG | 0.596668 | 1_1:+73273233 | None:intergenic |
| AAGACTCATTGAAGCAGGCA+TGG | 0.602785 | 1_1:+73273776 | None:intergenic |
| CAAGGCCCTCATAAGATCCA+AGG | 0.604638 | 1_1:-73272678 | Msa0042420:intron |
| GTAACATGAGATGCTACCAT+TGG | 0.604856 | 1_1:+73271659 | None:intergenic |
| CAATACCTTGGATCTTATGA+GGG | 0.606155 | 1_1:+73272673 | None:intergenic |
| GGGAATTGGGACAGAGACAA+AGG | 0.606225 | 1_1:+73275241 | None:intergenic |
| TAGCATGATTGCAGATGCTG+AGG | 0.608575 | 1_1:-73274166 | Msa0042420:CDS |
| CAACACAACCATCCACAACA+TGG | 0.609088 | 1_1:+73274863 | None:intergenic |
| AAATCAACATCCAGAACACC+AGG | 0.609679 | 1_1:+73272636 | None:intergenic |
| AGATCTGGAAAAGCTCTGGT+GGG | 0.624158 | 1_1:-73273487 | Msa0042420:CDS |
| GAAAGTCCAGTATTGTCTGG+AGG | 0.625339 | 1_1:-73273227 | Msa0042420:CDS |
| GAGCCTACTAGTGGAAACAC+TGG | 0.626296 | 1_1:-73273849 | Msa0042420:CDS |
| TGAAAATCCTGCAAACCCAA+AGG | 0.632579 | 1_1:-73273619 | Msa0042420:intron |
| TGGTTGTGTTGCACAAATTG+CGG | 0.632724 | 1_1:-73274851 | Msa0042420:CDS |
| AAAATTGCTAAATACTATGG+CGG | 0.639638 | 1_1:-73275096 | Msa0042420:exon |
| TATCTCAACCATGTTGTGGA+TGG | 0.646691 | 1_1:-73274871 | Msa0042420:CDS |
| CTGTCTTTGACACTAGAGCA+AGG | 0.647667 | 1_1:+73274808 | None:intergenic |
| TGGATCAGTGAGAACTAACT+CGG | 0.649731 | 1_1:+73273722 | None:intergenic |
| GTTTCTGGTATAGGAACCGG+AGG | 0.680508 | 1_1:-73273449 | Msa0042420:CDS |
| TTCCACTAGTAGGCTCAATG+AGG | 0.683327 | 1_1:+73273856 | None:intergenic |
| ACATGGTTGAGATATACTAG+TGG | 0.684632 | 1_1:+73274880 | None:intergenic |
| GGGACAGAGACAAAGGACAA+AGG | 0.690625 | 1_1:+73275248 | None:intergenic |
| GGTTCCTATACCAGAAACAA+GGG | 0.692573 | 1_1:+73273454 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTTTTT+GGG | - | chr1_1:73272513-73272532 | Msa0042420:intron | 0.0% |
| !!! | ATCACTTTTTTTTTTTTTTT+TGG | - | chr1_1:73271851-73271870 | Msa0042420:intron | 10.0% |
| !! | GTTGATTATATAAACATATA+TGG | + | chr1_1:73271831-73271850 | None:intergenic | 15.0% |
| !!! | TTTCTGAGATTTTTTAAAAT+TGG | - | chr1_1:73272082-73272101 | Msa0042420:intron | 15.0% |
| !!! | TATCATTTTATCTTTTTTGT+TGG | - | chr1_1:73272236-73272255 | Msa0042420:intron | 15.0% |
| !!! | ATCATTTTATCTTTTTTGTT+GGG | - | chr1_1:73272237-73272256 | Msa0042420:intron | 15.0% |
| !!! | AAATTTTAAATCGTTTACTT+AGG | - | chr1_1:73272888-73272907 | Msa0042420:intron | 15.0% |
| !!! | TAATAAAACTTTTTTCTTGT+TGG | + | chr1_1:73274039-73274058 | None:intergenic | 15.0% |
| !! | ACTTAAACTTTATTATTGAA+GGG | + | chr1_1:73274349-73274368 | None:intergenic | 15.0% |
| !! | TACTTAAACTTTATTATTGA+AGG | + | chr1_1:73274350-73274369 | None:intergenic | 15.0% |
| !! | TAATAGAATATACAAACATT+CGG | + | chr1_1:73274563-73274582 | None:intergenic | 15.0% |
| !! | AGCAAAAAATTAATTTCAAA+TGG | + | chr1_1:73275154-73275173 | None:intergenic | 15.0% |
| !! | GATAAGAAATTAAATTGAAG+AGG | + | chr1_1:73271719-73271738 | None:intergenic | 20.0% |
| !! | TAGAAAATTGCTAAATACTA+TGG | - | chr1_1:73271759-73271778 | Msa0042420:CDS | 20.0% |
| !! | CACTTTATATAATGATTCTA+AGG | + | chr1_1:73272154-73272173 | None:intergenic | 20.0% |
| !!! | AATGATAGAAAGATTGATTT+TGG | + | chr1_1:73272223-73272242 | None:intergenic | 20.0% |
| !!! | ATAATGAGATTGATTTCAAT+TGG | - | chr1_1:73272350-73272369 | Msa0042420:intron | 20.0% |
| !! | ATAGCAACTAAAAAACATTA+AGG | + | chr1_1:73272641-73272660 | None:intergenic | 20.0% |
| !! | TCATGAATTAAATATCAAGA+AGG | + | chr1_1:73272753-73272772 | None:intergenic | 20.0% |
| !!! | ATCTCTTATTTGATAATCAA+TGG | + | chr1_1:73272936-73272955 | None:intergenic | 20.0% |
| !! | TAATCCTAACATTAATATCA+GGG | + | chr1_1:73273474-73273493 | None:intergenic | 20.0% |
| !! | ATAATCCTAACATTAATATC+AGG | + | chr1_1:73273475-73273494 | None:intergenic | 20.0% |
| !! | ATTACCTTCTATAAATTTCT+AGG | - | chr1_1:73273514-73273533 | Msa0042420:CDS | 20.0% |
| !!! | ATTTTTTTTCCTTAGCTATA+TGG | - | chr1_1:73273595-73273614 | Msa0042420:intron | 20.0% |
| !!! | TTAACTTGCAATAGAAATAA+AGG | + | chr1_1:73273683-73273702 | None:intergenic | 20.0% |
| !!! | ATTTTTCTTGGAAATCAAAA+CGG | - | chr1_1:73273972-73273991 | Msa0042420:intron | 20.0% |
| !! | ATATTCATAAGTTAACCAAA+AGG | + | chr1_1:73274389-73274408 | None:intergenic | 20.0% |
| !!! | TTGTCATAAGTTTGAAATAA+TGG | - | chr1_1:73275323-73275342 | Msa0042420:five_prime_UTR | 20.0% |
| !!! | TGTCATAAGTTTGAAATAAT+GGG | - | chr1_1:73275324-73275343 | Msa0042420:five_prime_UTR | 20.0% |
| ! | TACAACACAACATTATTTGT+TGG | - | chr1_1:73271527-73271546 | Msa0042420:three_prime_UTR | 25.0% |
| ! | CGTAAATATGGTAATACTAA+TGG | + | chr1_1:73271671-73271690 | None:intergenic | 25.0% |
| ! | AAAATTGCTAAATACTATGG+CGG | - | chr1_1:73271762-73271781 | Msa0042420:CDS | 25.0% |
| !!! | TTTTGAAATGTACAGTTGAT+TGG | - | chr1_1:73271948-73271967 | Msa0042420:intron | 25.0% |
| !! | TGATTTCAATTGGTTTAAGT+TGG | - | chr1_1:73272360-73272379 | Msa0042420:intron | 25.0% |
| ! | GATTATGAGATCATTACAAT+AGG | - | chr1_1:73272388-73272407 | Msa0042420:intron | 25.0% |
| !! | CATCATGGAACATATAATTT+TGG | - | chr1_1:73272411-73272430 | Msa0042420:intron | 25.0% |
| ! | TATGAAACAGAATTAAGTCA+TGG | + | chr1_1:73272460-73272479 | None:intergenic | 25.0% |
| !! | AACATTCAGAATAGATCTTT+TGG | + | chr1_1:73272485-73272504 | None:intergenic | 25.0% |
| ! | ATAATTCTTTCATTTGATGC+AGG | - | chr1_1:73272661-73272680 | Msa0042420:CDS | 25.0% |
| ! | TGAATGACTTATTCTTAATG+CGG | + | chr1_1:73272840-73272859 | None:intergenic | 25.0% |
| ! | TTTAAATCGTTTACTTAGGT+TGG | - | chr1_1:73272892-73272911 | Msa0042420:intron | 25.0% |
| ! | AATAAGAGATGAAATTCACA+AGG | - | chr1_1:73272946-73272965 | Msa0042420:intron | 25.0% |
| !!! | GTTATTTTTAGAGAATCACT+TGG | - | chr1_1:73273280-73273299 | Msa0042420:intron | 25.0% |
| ! | AAAACCCTGATATTAATGTT+AGG | - | chr1_1:73273467-73273486 | Msa0042420:CDS | 25.0% |
| !!! | GTTTTGATTTCCAAGAAAAA+TGG | + | chr1_1:73273973-73273992 | None:intergenic | 25.0% |
| !!! | ACATTGCTTTGTTATTTGAA+TGG | - | chr1_1:73274081-73274100 | Msa0042420:intron | 25.0% |
| ! | AAACTTCTTGCATTAAAAGA+AGG | - | chr1_1:73274670-73274689 | Msa0042420:intron | 25.0% |
| ! | AATAGCATATCATTCGAAAA+TGG | + | chr1_1:73274747-73274766 | None:intergenic | 25.0% |
| TTTGTACGTGTAAAAAAGGA+AGG | + | chr1_1:73271582-73271601 | None:intergenic | 30.0% | |
| GTACTTTGTACGTGTAAAAA+AGG | + | chr1_1:73271586-73271605 | None:intergenic | 30.0% | |
| CATGTAAGTGATCGTAAATA+TGG | + | chr1_1:73271683-73271702 | None:intergenic | 30.0% | |
| AGAAAATCTAGAGAATCGTA+GGG | + | chr1_1:73272286-73272305 | None:intergenic | 30.0% | |
| GACAAATGTTAGTAAGTTAG+TGG | - | chr1_1:73272538-73272557 | Msa0042420:intron | 30.0% | |
| !!! | TAGTGGTTACATTAGTTTTC+AGG | - | chr1_1:73272555-73272574 | Msa0042420:intron | 30.0% |
| !!! | AGTGGTTACATTAGTTTTCA+GGG | - | chr1_1:73272556-73272575 | Msa0042420:intron | 30.0% |
| !! | TTTTTAGAGAATCACTTGGT+TGG | - | chr1_1:73273284-73273303 | Msa0042420:intron | 30.0% |
| TTCATAGTGAACCTAAAAGT+AGG | + | chr1_1:73273338-73273357 | None:intergenic | 30.0% | |
| CATGCCTAGAAATTTATAGA+AGG | + | chr1_1:73273521-73273540 | None:intergenic | 30.0% | |
| TTTACAAGTACTCATGAAGT+GGG | + | chr1_1:73273883-73273902 | None:intergenic | 30.0% | |
| ! | TTTTACAAGTACTCATGAAG+TGG | + | chr1_1:73273884-73273903 | None:intergenic | 30.0% |
| CATGAGTACTTGTAAAATCA+TGG | - | chr1_1:73273887-73273906 | Msa0042420:intron | 30.0% | |
| !! | CAAGTCAATACCATTTTTCT+TGG | - | chr1_1:73273960-73273979 | Msa0042420:intron | 30.0% |
| ATAACAAAGCAAAAGTGAGA+AGG | + | chr1_1:73274014-73274033 | None:intergenic | 30.0% | |
| AAAATATCATGCGTTTGTCA+GGG | + | chr1_1:73274153-73274172 | None:intergenic | 30.0% | |
| ! | CATGATATTTTCCATGTACA+AGG | - | chr1_1:73274162-73274181 | Msa0042420:CDS | 30.0% |
| TTGATGAAGTAATCCAAGTA+AGG | - | chr1_1:73274247-73274266 | Msa0042420:intron | 30.0% | |
| ! | ATTATTGAAGGGAGTACAAT+TGG | + | chr1_1:73274338-73274357 | None:intergenic | 30.0% |
| TCATAAGTTAACCAAAAGGA+CGG | + | chr1_1:73274385-73274404 | None:intergenic | 30.0% | |
| ACTTACTATTCATTCATCGT+TGG | - | chr1_1:73274473-73274492 | Msa0042420:intron | 30.0% | |
| CTTACTATTCATTCATCGTT+GGG | - | chr1_1:73274474-73274493 | Msa0042420:intron | 30.0% | |
| TAAGAGTTGCCAGTTATTTA+TGG | + | chr1_1:73274603-73274622 | None:intergenic | 30.0% | |
| AATTAAGATTGCAAAGAAGC+CGG | - | chr1_1:73274826-73274845 | Msa0042420:CDS | 30.0% | |
| AACTCTAATATGGCCAATTA+TGG | + | chr1_1:73274960-73274979 | None:intergenic | 30.0% | |
| GAATGAGAGAAACTCTAATA+TGG | + | chr1_1:73274970-73274989 | None:intergenic | 30.0% | |
| CACTTATTCGATACATATAC+AGG | - | chr1_1:73275017-73275036 | Msa0042420:intron | 30.0% | |
| ! | ATGCTCAAAGATCATGTTTT+CGG | + | chr1_1:73275109-73275128 | None:intergenic | 30.0% |
| TTTGCTTCTCAAATTTGAAG+TGG | - | chr1_1:73275168-73275187 | Msa0042420:intron | 30.0% | |
| ! | TTGCTTCTCAAATTTGAAGT+GGG | - | chr1_1:73275169-73275188 | Msa0042420:intron | 30.0% |
| TATTCAGATGCAGATGTAAA+TGG | + | chr1_1:73275255-73275274 | None:intergenic | 30.0% | |
| TGATAGGTAGTTTGGGAATT+GGG | + | chr1_1:73271633-73271652 | None:intergenic | 35.0% | |
| AACCATTGCTAAAGATGTCA+CGG | - | chr1_1:73271795-73271814 | Msa0042420:CDS | 35.0% | |
| ACATGGTTGAGATATACTAG+TGG | + | chr1_1:73271981-73272000 | None:intergenic | 35.0% | |
| AGTATATCTCAACCATGTTG+TGG | - | chr1_1:73271983-73272002 | Msa0042420:intron | 35.0% | |
| CAGAAAATCTAGAGAATCGT+AGG | + | chr1_1:73272287-73272306 | None:intergenic | 35.0% | |
| GATCATTACAATAGGCATCA+TGG | - | chr1_1:73272396-73272415 | Msa0042420:intron | 35.0% | |
| !! | AGTTTTCAGGGATTTCACTT+TGG | - | chr1_1:73272568-73272587 | Msa0042420:intron | 35.0% |
| TCTTTCATTTGATGCAGGAT+AGG | - | chr1_1:73272666-73272685 | Msa0042420:CDS | 35.0% | |
| GAAGGAAAACTAACTTCTTG+CGG | + | chr1_1:73272735-73272754 | None:intergenic | 35.0% | |
| TGGTCAAAAGAGTAAGTAGA+AGG | + | chr1_1:73272807-73272826 | None:intergenic | 35.0% | |
| !!! | TTACTTAGGTTGGTTTTGTG+TGG | - | chr1_1:73272902-73272921 | Msa0042420:intron | 35.0% |
| TGCTGAAGAATGTAAGCATT+GGG | + | chr1_1:73273216-73273235 | None:intergenic | 35.0% | |
| TTGCTGAAGAATGTAAGCAT+TGG | + | chr1_1:73273217-73273236 | None:intergenic | 35.0% | |
| TTGACACAACTAACACCTTT+GGG | + | chr1_1:73273257-73273276 | None:intergenic | 35.0% | |
| ATTGACACAACTAACACCTT+TGG | + | chr1_1:73273258-73273277 | None:intergenic | 35.0% | |
| ATAGTGAACCTAAAAGTAGG+CGG | + | chr1_1:73273335-73273354 | None:intergenic | 35.0% | |
| TAGGTTCACTATGAAACTAC+TGG | - | chr1_1:73273343-73273362 | Msa0042420:intron | 35.0% | |
| ! | TTTTCCTTAGCTATATGGTG+TGG | - | chr1_1:73273600-73273619 | Msa0042420:intron | 35.0% |
| GATAAGAAAGAAAACTCACC+AGG | + | chr1_1:73273661-73273680 | None:intergenic | 35.0% | |
| ! | CTTTTCCTCAATGTGCATTA+GGG | + | chr1_1:73273729-73273748 | None:intergenic | 35.0% |
| ! | ACTTTTCCTCAATGTGCATT+AGG | + | chr1_1:73273730-73273749 | None:intergenic | 35.0% |
| ! | AAAGTATCACCTTCACCATT+CGG | - | chr1_1:73273745-73273764 | Msa0042420:CDS | 35.0% |
| ACTAGTGCATATAATCATCG+AGG | + | chr1_1:73273850-73273869 | None:intergenic | 35.0% | |
| AAATATCATGCGTTTGTCAG+GGG | + | chr1_1:73274152-73274171 | None:intergenic | 35.0% | |
| GAAAATATCATGCGTTTGTC+AGG | + | chr1_1:73274154-73274173 | None:intergenic | 35.0% | |
| CAATACCTTGGATCTTATGA+GGG | + | chr1_1:73274188-73274207 | None:intergenic | 35.0% | |
| CAAAAGATTCATGCCTTACT+TGG | + | chr1_1:73274263-73274282 | None:intergenic | 35.0% | |
| ! | AAAAAATGTAGCCGTCCTTT+TGG | - | chr1_1:73274371-73274390 | Msa0042420:intron | 35.0% |
| CGCTATAGTCCATAAATAAC+TGG | - | chr1_1:73274591-73274610 | Msa0042420:intron | 35.0% | |
| TGCATTAAAAGAAGGTTTGC+TGG | - | chr1_1:73274678-73274697 | Msa0042420:intron | 35.0% | |
| ! | ATGAGTTTTCCAGCATTTTC+CGG | + | chr1_1:73274848-73274867 | None:intergenic | 35.0% |
| ATATCAACTGAATCATGTGC+TGG | - | chr1_1:73274931-73274950 | Msa0042420:intron | 35.0% | |
| ! | TTCTCAAATTTGAAGTGGGA+TGG | - | chr1_1:73275173-73275192 | Msa0042420:intron | 35.0% |
| ! | TCTCAAATTTGAAGTGGGAT+GGG | - | chr1_1:73275174-73275193 | Msa0042420:intron | 35.0% |
| CTCATGTTACAGTTTGTGTT+TGG | - | chr1_1:73275212-73275231 | Msa0042420:intron | 35.0% | |
| GTGTAAAAAAGGAAGGAGAC+TGG | + | chr1_1:73271575-73271594 | None:intergenic | 40.0% | |
| GTGATAGGTAGTTTGGGAAT+TGG | + | chr1_1:73271634-73271653 | None:intergenic | 40.0% | |
| ! | TTCGGTGTGATAGGTAGTTT+GGG | + | chr1_1:73271640-73271659 | None:intergenic | 40.0% |
| ATACTAATGGCGTACGAGTT+CGG | + | chr1_1:73271658-73271677 | None:intergenic | 40.0% | |
| TTCCGTGACATCTTTAGCAA+TGG | + | chr1_1:73271800-73271819 | None:intergenic | 40.0% | |
| TATCTCAACCATGTTGTGGA+TGG | - | chr1_1:73271987-73272006 | Msa0042420:intron | 40.0% | |
| TGGTTGTGTTGCACAAATTG+CGG | - | chr1_1:73272007-73272026 | Msa0042420:intron | 40.0% | |
| AAAACATTAAGGTCCCACGT+TGG | + | chr1_1:73272630-73272649 | None:intergenic | 40.0% | |
| CTTAATGCGGCTACTAAAGT+TGG | + | chr1_1:73272827-73272846 | None:intergenic | 40.0% | |
| ATACCAGTGTTTCCACTAGT+AGG | + | chr1_1:73273015-73273034 | None:intergenic | 40.0% | |
| ACTAGTGGAAACACTGGTAT+TGG | - | chr1_1:73273015-73273034 | Msa0042420:intron | 40.0% | |
| !! | TGGAAACACTGGTATTGGTT+TGG | - | chr1_1:73273020-73273039 | Msa0042420:intron | 40.0% |
| !! | TGGTATTGGTTTGGCATTCA+TGG | - | chr1_1:73273029-73273048 | Msa0042420:intron | 40.0% |
| TGGATCAGTGAGAACTAACT+CGG | + | chr1_1:73273139-73273158 | None:intergenic | 40.0% | |
| ! | GATCCAGCTAAAGGTATGAA+AGG | - | chr1_1:73273153-73273172 | Msa0042420:intron | 40.0% |
| TGAAAATCCTGCAAACCCAA+AGG | - | chr1_1:73273239-73273258 | Msa0042420:CDS | 40.0% | |
| !! | ATTCTCTTCCGCCTACTTTT+AGG | - | chr1_1:73273324-73273343 | Msa0042420:intron | 40.0% |
| !! | AAAGTTGATGCCCTTGTTTC+TGG | - | chr1_1:73273394-73273413 | Msa0042420:intron | 40.0% |
| GGTTCCTATACCAGAAACAA+GGG | + | chr1_1:73273407-73273426 | None:intergenic | 40.0% | |
| !! | CTTGTTTCTGGTATAGGAAC+CGG | - | chr1_1:73273406-73273425 | Msa0042420:CDS | 40.0% |
| GACAATACTGGACTTTCAAG+TGG | + | chr1_1:73273628-73273647 | None:intergenic | 40.0% | |
| CTTGAAAGTCCAGTATTGTC+TGG | - | chr1_1:73273628-73273647 | Msa0042420:CDS | 40.0% | |
| AAAGTCCAGTATTGTCTGGA+GGG | - | chr1_1:73273632-73273651 | Msa0042420:CDS | 40.0% | |
| AAGTTCCCTAATGCACATTG+AGG | - | chr1_1:73273721-73273740 | Msa0042420:CDS | 40.0% | |
| AAGTATCACCTTCACCATTC+GGG | - | chr1_1:73273746-73273765 | Msa0042420:CDS | 40.0% | |
| TGACAGTTTATTTGCCTCGA+TGG | - | chr1_1:73273789-73273808 | Msa0042420:CDS | 40.0% | |
| TTTGCACATTTGATCCATCG+AGG | + | chr1_1:73273806-73273825 | None:intergenic | 40.0% | |
| CATGGATTCTGATTTCTCTG+TGG | - | chr1_1:73273905-73273924 | Msa0042420:intron | 40.0% | |
| GGGGAATGATACATAGAAGA+GGG | + | chr1_1:73274133-73274152 | None:intergenic | 40.0% | |
| AGGGGAATGATACATAGAAG+AGG | + | chr1_1:73274134-73274153 | None:intergenic | 40.0% | |
| CCAATACCTTGGATCTTATG+AGG | + | chr1_1:73274189-73274208 | None:intergenic | 40.0% | |
| CCTCATAAGATCCAAGGTAT+TGG | - | chr1_1:73274186-73274205 | Msa0042420:intron | 40.0% | |
| AAATCAACATCCAGAACACC+AGG | + | chr1_1:73274225-73274244 | None:intergenic | 40.0% | |
| !!! | GTCTTTTTTCCCTCTCTTCT+TGG | - | chr1_1:73274424-73274443 | Msa0042420:intron | 40.0% |
| GTGCGTGAATTTGCATAATG+TGG | + | chr1_1:73274455-73274474 | None:intergenic | 40.0% | |
| TCATTCATCGTTGGGAAAGA+TGG | - | chr1_1:73274482-73274501 | Msa0042420:intron | 40.0% | |
| AGTTTCAATAGCTTCTTCGC+TGG | + | chr1_1:73274647-73274666 | None:intergenic | 40.0% | |
| TACCACTGAACTTGTGTTTC+AGG | - | chr1_1:73274769-73274788 | Msa0042420:intron | 40.0% | |
| ! | ACTGAACTTGTGTTTCAGGT+GGG | - | chr1_1:73274773-73274792 | Msa0042420:intron | 40.0% |
| AATCTTAATTGCAGCTGCTG+CGG | + | chr1_1:73274816-73274835 | None:intergenic | 40.0% | |
| GTAACATGAGATGCTACCAT+TGG | + | chr1_1:73275202-73275221 | None:intergenic | 40.0% | |
| !! | GTTCGGTGTGATAGGTAGTT+TGG | + | chr1_1:73271641-73271660 | None:intergenic | 45.0% |
| CAACACAACCATCCACAACA+TGG | + | chr1_1:73271998-73272017 | None:intergenic | 45.0% | |
| TGCGGCAAAGCTAGAAATGA+TGG | - | chr1_1:73272025-73272044 | Msa0042420:CDS | 45.0% | |
| CTGTCTTTGACACTAGAGCA+AGG | + | chr1_1:73272053-73272072 | None:intergenic | 45.0% | |
| CTTGCTCTAGTGTCAAAGAC+AGG | - | chr1_1:73272051-73272070 | Msa0042420:CDS | 45.0% | |
| ACCAACCAAACTACCAACGT+GGG | - | chr1_1:73272614-73272633 | Msa0042420:intron | 45.0% | |
| TAGCATGATTGCAGATGCTG+AGG | - | chr1_1:73272692-73272711 | Msa0042420:intron | 45.0% | |
| ATTGCAGATGCTGAGGAGAA+AGG | - | chr1_1:73272699-73272718 | Msa0042420:intron | 45.0% | |
| TTCCACTAGTAGGCTCAATG+AGG | + | chr1_1:73273005-73273024 | None:intergenic | 45.0% | |
| AAGACTCATTGAAGCAGGCA+TGG | + | chr1_1:73273085-73273104 | None:intergenic | 45.0% | |
| CTCTCAAGACTCATTGAAGC+AGG | + | chr1_1:73273090-73273109 | None:intergenic | 45.0% | |
| ! | AGAACCATTCTTCGCGCTTT+TGG | - | chr1_1:73273111-73273130 | Msa0042420:intron | 45.0% |
| GTTCTCACTGATCCAGCTAA+AGG | - | chr1_1:73273144-73273163 | Msa0042420:intron | 45.0% | |
| GCTCCTTTCATACCTTTAGC+TGG | + | chr1_1:73273159-73273178 | None:intergenic | 45.0% | |
| AGCTGTTCAGAAAGCTGAAG+AGG | - | chr1_1:73273176-73273195 | Msa0042420:intron | 45.0% | |
| ! | ACTAACACCTTTGGGTTTGC+AGG | + | chr1_1:73273249-73273268 | None:intergenic | 45.0% |
| AAACTACTGGACCAGAGATC+TGG | - | chr1_1:73273356-73273375 | Msa0042420:intron | 45.0% | |
| ! | AGATCTGGAAAAGCTCTGGT+GGG | - | chr1_1:73273371-73273390 | Msa0042420:intron | 45.0% |
| !! | GATGCCCTTGTTTCTGGTAT+AGG | - | chr1_1:73273400-73273419 | Msa0042420:CDS | 45.0% |
| CGGTTCCTATACCAGAAACA+AGG | + | chr1_1:73273408-73273427 | None:intergenic | 45.0% | |
| GGTTCCACACCATATAGCTA+AGG | + | chr1_1:73273607-73273626 | None:intergenic | 45.0% | |
| GAAAGTCCAGTATTGTCTGG+AGG | - | chr1_1:73273631-73273650 | Msa0042420:CDS | 45.0% | |
| AGTATCACCTTCACCATTCG+GGG | - | chr1_1:73273747-73273766 | Msa0042420:CDS | 45.0% | |
| ! | TCTTATGAGGGCCTTGTACA+TGG | + | chr1_1:73274176-73274195 | None:intergenic | 45.0% |
| !! | AAGATCCAAGGTATTGGTGC+TGG | - | chr1_1:73274192-73274211 | Msa0042420:intron | 45.0% |
| CACCTGAAACACAAGTTCAG+TGG | + | chr1_1:73274774-73274793 | None:intergenic | 45.0% | |
| CACTGAACTTGTGTTTCAGG+TGG | - | chr1_1:73274772-73274791 | Msa0042420:intron | 45.0% | |
| ! | CTGAACTTGTGTTTCAGGTG+GGG | - | chr1_1:73274774-73274793 | Msa0042420:intron | 45.0% |
| ! | TTTCAGGTGGGGATATCATC+TGG | - | chr1_1:73274785-73274804 | Msa0042420:intron | 45.0% |
| CATGTGCTGGAGTCCATAAT+TGG | - | chr1_1:73274944-73274963 | Msa0042420:intron | 45.0% | |
| AGATAACGCTCTCCAAAGCT+CGG | + | chr1_1:73275051-73275070 | None:intergenic | 45.0% | |
| !!! | CTTTTTTTTTTTTTTTTTTT+TGG | - | chr1_1:73272512-73272531 | Msa0042420:intron | 5.0% |
| !!! | TTTTTTATATAAAAATATGA+TGG | - | chr1_1:73274311-73274330 | Msa0042420:intron | 5.0% |
| GGGACAGAGACAAAGGACAA+AGG | + | chr1_1:73271613-73271632 | None:intergenic | 50.0% | |
| GGGAATTGGGACAGAGACAA+AGG | + | chr1_1:73271620-73271639 | None:intergenic | 50.0% | |
| ! | GTTGGTGAGCTAACAGACAC+TGG | + | chr1_1:73272600-73272619 | None:intergenic | 50.0% |
| CACCAACCAAACTACCAACG+TGG | - | chr1_1:73272613-73272632 | Msa0042420:intron | 50.0% | |
| !! | TCCCACGTTGGTAGTTTGGT+TGG | + | chr1_1:73272618-73272637 | None:intergenic | 50.0% |
| !! | AAGGTCCCACGTTGGTAGTT+TGG | + | chr1_1:73272622-73272641 | None:intergenic | 50.0% |
| GTCCTCATTGAGCCTACTAG+TGG | - | chr1_1:73273000-73273019 | Msa0042420:intron | 50.0% | |
| GAGCCTACTAGTGGAAACAC+TGG | - | chr1_1:73273009-73273028 | Msa0042420:intron | 50.0% | |
| GCATTCATGGCAGCTGCTAA+GGG | - | chr1_1:73273042-73273061 | Msa0042420:intron | 50.0% | |
| GTAGGCGGAAGAGAATGAGT+TGG | + | chr1_1:73273320-73273339 | None:intergenic | 50.0% | |
| ! | CCAGAGCTTTTCCAGATCTC+TGG | + | chr1_1:73273370-73273389 | None:intergenic | 50.0% |
| CCAGAGATCTGGAAAAGCTC+TGG | - | chr1_1:73273367-73273386 | Msa0042420:intron | 50.0% | |
| ! | GAGATCTGGAAAAGCTCTGG+TGG | - | chr1_1:73273370-73273389 | Msa0042420:intron | 50.0% |
| !! | GTTTCTGGTATAGGAACCGG+AGG | - | chr1_1:73273409-73273428 | Msa0042420:CDS | 50.0% |
| TGGTATAGGAACCGGAGGTA+CGG | - | chr1_1:73273414-73273433 | Msa0042420:CDS | 50.0% | |
| GGTTTCCCTCCAGACAATAC+TGG | + | chr1_1:73273640-73273659 | None:intergenic | 50.0% | |
| GTATTGTCTGGAGGGAAACC+TGG | - | chr1_1:73273640-73273659 | Msa0042420:CDS | 50.0% | |
| AATGACTCCCCGAATGGTGA+AGG | + | chr1_1:73273757-73273776 | None:intergenic | 50.0% | |
| GACATGAATGACTCCCCGAA+TGG | + | chr1_1:73273763-73273782 | None:intergenic | 50.0% | |
| CAAGGCCCTCATAAGATCCA+AGG | - | chr1_1:73274180-73274199 | Msa0042420:intron | 50.0% | |
| TGAAGCCAGCACCAATACCT+TGG | + | chr1_1:73274200-73274219 | None:intergenic | 50.0% | |
| !! | ATTGGTGCTGGCTTCATTCC+TGG | - | chr1_1:73274204-73274223 | Msa0042420:intron | 50.0% |
| TGGCTTCATTCCTGGTGTTC+TGG | - | chr1_1:73274212-73274231 | Msa0042420:intron | 50.0% | |
| GCAAAGAAGCCGGAAAATGC+TGG | - | chr1_1:73274836-73274855 | Msa0042420:CDS | 50.0% | |
| !! | CAGGTTGTTTTCCCGAGCTT+TGG | - | chr1_1:73275036-73275055 | Msa0042420:intron | 50.0% |
| GATAACGCTCTCCAAAGCTC+GGG | + | chr1_1:73275050-73275069 | None:intergenic | 50.0% | |
| !! | GCGTACGAGTTCGGTGTGAT+AGG | + | chr1_1:73271649-73271668 | None:intergenic | 55.0% |
| GGCATTCATGGCAGCTGCTA+AGG | - | chr1_1:73273041-73273060 | Msa0042420:intron | 55.0% | |
| ! | GGCACCAAAAGCGCGAAGAA+TGG | + | chr1_1:73273118-73273137 | None:intergenic | 55.0% |
| AGCACCTGTTACCGTACCTC+CGG | + | chr1_1:73273428-73273447 | None:intergenic | 55.0% | |
| GTGGCGTCACCAAGAAGAGA+GGG | + | chr1_1:73274436-73274455 | None:intergenic | 55.0% | |
| TGTGGCGTCACCAAGAAGAG+AGG | + | chr1_1:73274437-73274456 | None:intergenic | 55.0% | |
| TGAAGTGGGATGGGAGCCAA+TGG | - | chr1_1:73275183-73275202 | Msa0042420:intron | 55.0% | |
| ! | GGAACCGGAGGTACGGTAAC+AGG | - | chr1_1:73273421-73273440 | Msa0042420:CDS | 60.0% |
| ! | GGAGGTACGGTAACAGGTGC+TGG | - | chr1_1:73273427-73273446 | Msa0042420:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 73271515 | 73275365 | 73271515 | ID=Msa0042420;Name=Msa0042420 |
| chr1_1 | mRNA | 73271515 | 73275365 | 73271515 | ID=Msa0042420-mRNA-1;Parent=Msa0042420;Name=Msa0042420-mRNA-1;_AED=0.36;_eAED=0.36;_QI=164|1|1|1|0.9|0.81|11|234|325 |
| chr1_1 | exon | 73271515 | 73271841 | 73271515 | ID=Msa0042420-mRNA-1:exon:24498;Parent=Msa0042420-mRNA-1 |
| chr1_1 | exon | 73272009 | 73272089 | 73272009 | ID=Msa0042420-mRNA-1:exon:24497;Parent=Msa0042420-mRNA-1 |
| chr1_1 | exon | 73272181 | 73272240 | 73272181 | ID=Msa0042420-mRNA-1:exon:24496;Parent=Msa0042420-mRNA-1 |
| chr1_1 | exon | 73272617 | 73272696 | 73272617 | ID=Msa0042420-mRNA-1:exon:24495;Parent=Msa0042420-mRNA-1 |
| chr1_1 | exon | 73273219 | 73273270 | 73273219 | ID=Msa0042420-mRNA-1:exon:24494;Parent=Msa0042420-mRNA-1 |
| chr1_1 | exon | 73273397 | 73273534 | 73273397 | ID=Msa0042420-mRNA-1:exon:24493;Parent=Msa0042420-mRNA-1 |
| chr1_1 | exon | 73273620 | 73273883 | 73273620 | ID=Msa0042420-mRNA-1:exon:24492;Parent=Msa0042420-mRNA-1 |
| chr1_1 | exon | 73274140 | 73274197 | 73274140 | ID=Msa0042420-mRNA-1:exon:24491;Parent=Msa0042420-mRNA-1 |
| chr1_1 | exon | 73274808 | 73274917 | 73274808 | ID=Msa0042420-mRNA-1:exon:24490;Parent=Msa0042420-mRNA-1 |
| chr1_1 | exon | 73275061 | 73275118 | 73275061 | ID=Msa0042420-mRNA-1:exon:24489;Parent=Msa0042420-mRNA-1 |
| chr1_1 | exon | 73275218 | 73275365 | 73275218 | ID=Msa0042420-mRNA-1:exon:24488;Parent=Msa0042420-mRNA-1 |
| chr1_1 | five_prime_UTR | 73275218 | 73275365 | 73275218 | ID=Msa0042420-mRNA-1:five_prime_utr;Parent=Msa0042420-mRNA-1 |
| chr1_1 | five_prime_UTR | 73275103 | 73275118 | 73275103 | ID=Msa0042420-mRNA-1:five_prime_utr;Parent=Msa0042420-mRNA-1 |
| chr1_1 | CDS | 73275061 | 73275102 | 73275061 | ID=Msa0042420-mRNA-1:cds;Parent=Msa0042420-mRNA-1 |
| chr1_1 | CDS | 73274808 | 73274917 | 73274808 | ID=Msa0042420-mRNA-1:cds;Parent=Msa0042420-mRNA-1 |
| chr1_1 | CDS | 73274140 | 73274197 | 73274140 | ID=Msa0042420-mRNA-1:cds;Parent=Msa0042420-mRNA-1 |
| chr1_1 | CDS | 73273620 | 73273883 | 73273620 | ID=Msa0042420-mRNA-1:cds;Parent=Msa0042420-mRNA-1 |
| chr1_1 | CDS | 73273397 | 73273534 | 73273397 | ID=Msa0042420-mRNA-1:cds;Parent=Msa0042420-mRNA-1 |
| chr1_1 | CDS | 73273219 | 73273270 | 73273219 | ID=Msa0042420-mRNA-1:cds;Parent=Msa0042420-mRNA-1 |
| chr1_1 | CDS | 73272617 | 73272696 | 73272617 | ID=Msa0042420-mRNA-1:cds;Parent=Msa0042420-mRNA-1 |
| chr1_1 | CDS | 73272181 | 73272240 | 73272181 | ID=Msa0042420-mRNA-1:cds;Parent=Msa0042420-mRNA-1 |
| chr1_1 | CDS | 73272009 | 73272089 | 73272009 | ID=Msa0042420-mRNA-1:cds;Parent=Msa0042420-mRNA-1 |
| chr1_1 | CDS | 73271749 | 73271841 | 73271749 | ID=Msa0042420-mRNA-1:cds;Parent=Msa0042420-mRNA-1 |
| chr1_1 | three_prime_UTR | 73271515 | 73271748 | 73271515 | ID=Msa0042420-mRNA-1:three_prime_utr;Parent=Msa0042420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
