Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080720 | XP_003591226.1 | 96.179 | 602 | 15 | 1 | 1 | 602 | 1 | 594 | 0.0 | 1201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080720 | sp|Q9FXA8|INVA_ARATH | 79.670 | 546 | 102 | 2 | 62 | 602 | 74 | 615 | 0.0 | 924 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080720 | G7I9I6 | 96.179 | 602 | 15 | 1 | 1 | 602 | 1 | 594 | 0.0 | 1201 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0080720 | Msa0982590 | 0.823341 | 1.459310e-53 | -8.615850e-47 |
| Msa0080720 | Msa1143790 | 0.801603 | 8.330223e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080720 | MtrunA17_Chr1g0192991 | 96.179 | 602 | 15 | 1 | 1 | 602 | 1 | 594 | 0.0 | 1201 |
| Msa0080720 | MtrunA17_Chr4g0068901 | 75.986 | 558 | 110 | 3 | 69 | 602 | 110 | 667 | 0.0 | 879 |
| Msa0080720 | MtrunA17_Chr7g0271621 | 68.988 | 603 | 164 | 6 | 5 | 602 | 62 | 646 | 0.0 | 854 |
| Msa0080720 | MtrunA17_Chr8g0383361 | 73.053 | 475 | 124 | 2 | 119 | 589 | 163 | 637 | 0.0 | 763 |
| Msa0080720 | MtrunA17_Chr1g0200341 | 60.265 | 453 | 174 | 3 | 122 | 572 | 92 | 540 | 0.0 | 580 |
| Msa0080720 | MtrunA17_Chr1g0200331 | 59.071 | 452 | 181 | 2 | 122 | 572 | 90 | 538 | 0.0 | 568 |
| Msa0080720 | MtrunA17_Chr3g0145461 | 57.112 | 457 | 192 | 2 | 121 | 577 | 111 | 563 | 0.0 | 564 |
| Msa0080720 | MtrunA17_Chr4g0038561 | 57.080 | 452 | 190 | 3 | 121 | 572 | 51 | 498 | 0.0 | 551 |
| Msa0080720 | MtrunA17_Chr3g0082721 | 80.606 | 165 | 32 | 0 | 314 | 478 | 2 | 166 | 3.62e-97 | 293 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080720 | AT1G56560.1 | 79.670 | 546 | 102 | 2 | 62 | 602 | 74 | 615 | 0.0 | 924 |
| Msa0080720 | AT3G05820.2 | 75.691 | 543 | 118 | 2 | 74 | 602 | 91 | 633 | 0.0 | 870 |
| Msa0080720 | AT3G06500.1 | 71.325 | 551 | 126 | 6 | 69 | 593 | 114 | 658 | 0.0 | 823 |
| Msa0080720 | AT5G22510.2 | 73.292 | 483 | 125 | 2 | 119 | 599 | 132 | 612 | 0.0 | 767 |
| Msa0080720 | AT5G22510.1 | 73.292 | 483 | 125 | 2 | 119 | 599 | 132 | 612 | 0.0 | 767 |
| Msa0080720 | AT3G06500.2 | 78.641 | 412 | 84 | 3 | 186 | 593 | 48 | 459 | 0.0 | 702 |
| Msa0080720 | AT3G05820.1 | 73.747 | 419 | 96 | 2 | 74 | 478 | 91 | 509 | 0.0 | 656 |
| Msa0080720 | AT4G09510.1 | 58.850 | 452 | 183 | 1 | 121 | 572 | 95 | 543 | 0.0 | 584 |
| Msa0080720 | AT4G34860.2 | 58.606 | 459 | 185 | 3 | 115 | 572 | 102 | 556 | 0.0 | 578 |
| Msa0080720 | AT4G34860.1 | 58.606 | 459 | 185 | 3 | 115 | 572 | 102 | 556 | 0.0 | 578 |
| Msa0080720 | AT4G34860.3 | 58.606 | 459 | 185 | 3 | 115 | 572 | 102 | 556 | 0.0 | 578 |
| Msa0080720 | AT1G35580.2 | 60.044 | 453 | 176 | 2 | 121 | 572 | 87 | 535 | 0.0 | 576 |
| Msa0080720 | AT1G35580.1 | 60.044 | 453 | 176 | 2 | 121 | 572 | 87 | 535 | 0.0 | 576 |
| Msa0080720 | AT1G22650.1 | 58.628 | 452 | 184 | 1 | 121 | 572 | 72 | 520 | 0.0 | 573 |
| Msa0080720 | AT1G72000.1 | 56.681 | 464 | 198 | 1 | 109 | 572 | 25 | 485 | 0.0 | 564 |
| Msa0080720 | AT4G09510.2 | 59.892 | 369 | 145 | 1 | 121 | 489 | 95 | 460 | 3.12e-166 | 482 |
| Msa0080720 | AT1G35580.3 | 60.322 | 373 | 143 | 2 | 121 | 492 | 87 | 455 | 7.54e-163 | 473 |
| Msa0080720 | AT1G22650.2 | 58.537 | 369 | 150 | 1 | 121 | 489 | 72 | 437 | 2.08e-160 | 467 |
Find 179 sgRNAs with CRISPR-Local
Find 385 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGCTAAATCAACTGCTTTC+TGG | 0.071842 | 1_2:+59081213 | None:intergenic |
| ACCCAGAACAAATTCCTTTC+TGG | 0.156767 | 1_2:-59082821 | Msa0080720:CDS |
| TGATTCTTTACCTCAGATTT+TGG | 0.162677 | 1_2:+59085875 | None:intergenic |
| TCCACATTAGACAATATTAT+TGG | 0.175135 | 1_2:-59082926 | Msa0080720:CDS |
| CCCAGAACTTACGTATTCTT+TGG | 0.193919 | 1_2:+59082549 | None:intergenic |
| TTATAGCTCGGTTGCGAATT+AGG | 0.215444 | 1_2:+59085674 | None:intergenic |
| CACACTGGCATGCATCAAAA+TGG | 0.227130 | 1_2:-59081252 | Msa0080720:CDS |
| ATCATCCTATTGCGGGCTTA+TGG | 0.228374 | 1_2:-59084145 | Msa0080720:CDS |
| TAAATCTGATAGAAGCAAAA+TGG | 0.229627 | 1_2:-59082656 | Msa0080720:CDS |
| TAAGAAGTTGTTTGAATTGA+AGG | 0.258748 | 1_2:+59085798 | None:intergenic |
| CAATATAATAGAAGTTAAAT+TGG | 0.264375 | 1_2:-59080860 | Msa0080720:three_prime_UTR |
| AAAGACTGCCAGTTGATTCT+TGG | 0.265881 | 1_2:-59081187 | Msa0080720:CDS |
| GAATTCCAGTTCACAAGTTC+AGG | 0.272799 | 1_2:-59080902 | Msa0080720:three_prime_UTR |
| TGATGCAAGTGTGCATTATT+TGG | 0.273626 | 1_2:-59080930 | Msa0080720:three_prime_UTR |
| ATTATGATCAAGTGTTTATT+CGG | 0.284623 | 1_2:-59085231 | Msa0080720:CDS |
| ACCCAGAAAGGAATTTGTTC+TGG | 0.288475 | 1_2:+59082819 | None:intergenic |
| TGCACTCAGTCTGTTGTTAA+TGG | 0.288921 | 1_2:+59082956 | None:intergenic |
| AACCAGCTCACATGGATTTC+CGG | 0.319829 | 1_2:-59082749 | Msa0080720:CDS |
| CGAGTTGCACCTGTAGATTC+AGG | 0.322916 | 1_2:-59084306 | Msa0080720:intron |
| ACAAATTCCTTTCTGGGTAA+TGG | 0.323777 | 1_2:-59082814 | Msa0080720:CDS |
| TCTTCATACCTTGCAATTGC+AGG | 0.326372 | 1_2:-59085143 | Msa0080720:intron |
| TCAACACTTTCCACCACTAA+TGG | 0.333748 | 1_2:+59085409 | None:intergenic |
| TTAAAAGCATCTTGGATGTA+AGG | 0.348441 | 1_2:+59081084 | None:intergenic |
| GAATATTATGATACTCGTTC+TGG | 0.348990 | 1_2:-59081161 | Msa0080720:CDS |
| CTTGTAATTATAGTTTATAT+TGG | 0.350283 | 1_2:-59080816 | Msa0080720:three_prime_UTR |
| CCCAGAACAAATTCCTTTCT+GGG | 0.352109 | 1_2:-59082820 | Msa0080720:CDS |
| CCACATTAGACAATATTATT+GGG | 0.353233 | 1_2:-59082925 | Msa0080720:CDS |
| GGCTAAATCAACTGCTTTCT+GGG | 0.360144 | 1_2:+59081214 | None:intergenic |
| ACTCGTTCTGGAAAATTTAT+CGG | 0.365942 | 1_2:-59081149 | Msa0080720:CDS |
| CGTGTATGAAGGTGTAATTC+GGG | 0.369971 | 1_2:+59085752 | None:intergenic |
| ATGGATTGGATTCCTGAAAA+AGG | 0.373125 | 1_2:-59082795 | Msa0080720:CDS |
| CTTCTTGATATATGTGTTTG+TGG | 0.374936 | 1_2:-59081014 | Msa0080720:CDS |
| GAACGAGTATCATAATATTC+AGG | 0.375148 | 1_2:+59081164 | None:intergenic |
| GATGGCTTAACCAATGTATT+GGG | 0.379843 | 1_2:-59080789 | Msa0080720:three_prime_UTR |
| ACTACCAACGTTCACTACTT+TGG | 0.383009 | 1_2:-59080649 | Msa0080720:three_prime_UTR |
| CCATCTTTGCTAGTCACTGA+TGG | 0.383324 | 1_2:-59084022 | Msa0080720:CDS |
| AGATGGCTTAACCAATGTAT+TGG | 0.384341 | 1_2:-59080790 | Msa0080720:three_prime_UTR |
| GAAGAGTGGCGAATAATTAC+TGG | 0.384787 | 1_2:-59082579 | Msa0080720:CDS |
| GTGGTGGATCATCCTATTGC+GGG | 0.386658 | 1_2:-59084152 | Msa0080720:CDS |
| CCAGAACTTACGTATTCTTT+GGG | 0.388054 | 1_2:+59082550 | None:intergenic |
| ATAGTTTATATTGGTTAAGA+TGG | 0.388254 | 1_2:-59080807 | Msa0080720:three_prime_UTR |
| TCGTGTATGAAGGTGTAATT+CGG | 0.389607 | 1_2:+59085751 | None:intergenic |
| TCATCCTATTGCGGGCTTAT+GGG | 0.389729 | 1_2:-59084144 | Msa0080720:CDS |
| TTCCTTTCTGGGTAATGGAT+TGG | 0.391790 | 1_2:-59082809 | Msa0080720:CDS |
| TTAAGCTCACTTGGATTTCA+AGG | 0.392542 | 1_2:+59083957 | None:intergenic |
| TATCAAACATGGACCATAGC+TGG | 0.394411 | 1_2:-59081110 | Msa0080720:CDS |
| TTATGATCAAGTGTTTATTC+GGG | 0.401063 | 1_2:-59085230 | Msa0080720:CDS |
| ATGAATTTGAAGAACTTGTA+AGG | 0.403749 | 1_2:+59085635 | None:intergenic |
| CTTATTGTGGGAATCCTGTT+GGG | 0.414382 | 1_2:-59085294 | Msa0080720:CDS |
| TGTGTTCATCACGGAAGAAT+GGG | 0.414938 | 1_2:+59085702 | None:intergenic |
| AAATAGCCTCATTCTGTCTC+GGG | 0.418210 | 1_2:+59082679 | None:intergenic |
| GACAGGCGTATGGGCATTCA+TGG | 0.419882 | 1_2:-59083986 | Msa0080720:CDS |
| AATGGCTCTAACAAGATCAT+TGG | 0.423387 | 1_2:+59082974 | None:intergenic |
| TTTGAGAGGATTTATATTCA+GGG | 0.425342 | 1_2:-59085448 | Msa0080720:CDS |
| GTAGATGTTGAACTTGTTGA+TGG | 0.431926 | 1_2:+59082842 | None:intergenic |
| CCCAGAAAGGAATTTGTTCT+GGG | 0.434203 | 1_2:+59082820 | None:intergenic |
| AAAAGATCAATGAAATCTAT+AGG | 0.438068 | 1_2:-59082893 | Msa0080720:CDS |
| TCTTCCCATAAGCCCGCAAT+AGG | 0.438173 | 1_2:+59084140 | None:intergenic |
| ACACTGGCATGCATCAAAAT+GGG | 0.439361 | 1_2:-59081251 | Msa0080720:CDS |
| TCTAAAAGCGTTGTGATTGT+TGG | 0.440665 | 1_2:+59085543 | None:intergenic |
| GCAGGATAACATATCTTAAG+AGG | 0.441648 | 1_2:+59082612 | None:intergenic |
| CTGTGTTCATCACGGAAGAA+TGG | 0.441733 | 1_2:+59085701 | None:intergenic |
| ATAGCTGATTCCCCAAAATC+AGG | 0.445621 | 1_2:+59084333 | None:intergenic |
| GAAAGGGTTGATGTTCAAAC+AGG | 0.446579 | 1_2:-59084094 | Msa0080720:CDS |
| AAATCTGATAGAAGCAAAAT+GGG | 0.447601 | 1_2:-59082655 | Msa0080720:CDS |
| CGGGCTTATGGGAAGATAAC+CGG | 0.453324 | 1_2:-59084133 | Msa0080720:CDS |
| TAAGATATGTTATCCTGCCT+TGG | 0.457047 | 1_2:-59082607 | Msa0080720:CDS |
| AACTGTGGACTGCTACAGTC+CGG | 0.461739 | 1_2:-59084433 | Msa0080720:CDS |
| GGACTGCTACAGTCCGGGAC+AGG | 0.464194 | 1_2:-59084427 | Msa0080720:CDS |
| CATACCCTGAACTTGTGAAC+TGG | 0.464891 | 1_2:+59080897 | None:intergenic |
| TTGAGACTTGGCAGCGCCAC+GGG | 0.470381 | 1_2:+59080962 | None:intergenic |
| CATCTTTGCTAGTCACTGAT+GGG | 0.473948 | 1_2:-59084021 | Msa0080720:CDS |
| CCCAATAATATTGTCTAATG+TGG | 0.477793 | 1_2:+59082925 | None:intergenic |
| CTTAAATTGTGTCTAACAGA+TGG | 0.478514 | 1_2:-59084058 | Msa0080720:CDS |
| CATTAGCATGGTGAAGTAGC+GGG | 0.480716 | 1_2:+59085599 | None:intergenic |
| AAAATAGCCTCATTCTGTCT+CGG | 0.481677 | 1_2:+59082678 | None:intergenic |
| GTGGCCAACCCTTCTGTGGC+AGG | 0.483579 | 1_2:-59082373 | Msa0080720:intron |
| GGTGCTCAGAGATGAAATAA+TGG | 0.486416 | 1_2:+59082701 | None:intergenic |
| TATTCAGGCCAAGAATCAAC+TGG | 0.489984 | 1_2:+59081179 | None:intergenic |
| GGTCCATGTTTGATACAGCC+TGG | 0.490090 | 1_2:+59081118 | None:intergenic |
| AGCAAAATGGGACGAACTTG+TGG | 0.490672 | 1_2:-59082643 | Msa0080720:CDS |
| TGTGAATTTGAAGCCATTAG+TGG | 0.490909 | 1_2:-59085422 | Msa0080720:CDS |
| GTTAGAACCGTAGCTCTTGA+CGG | 0.492355 | 1_2:-59084381 | Msa0080720:CDS |
| GCCGGCATCAAGCCCTGTCC+CGG | 0.493232 | 1_2:+59084414 | None:intergenic |
| ATCCAATCCATTACCCAGAA+AGG | 0.495277 | 1_2:+59082807 | None:intergenic |
| TTTAGAATACTAGGGTTTCA+GGG | 0.496088 | 1_2:-59085526 | Msa0080720:CDS |
| CCATCAGTGACTAGCAAAGA+TGG | 0.498335 | 1_2:+59084022 | None:intergenic |
| ATGGGTCTTGTATGATAGAC+AGG | 0.498681 | 1_2:-59084003 | Msa0080720:CDS |
| TGACTACAGCTTGGCAGAAA+GGG | 0.499690 | 1_2:-59084110 | Msa0080720:CDS |
| TTAGTATACATAGCTGTAAG+TGG | 0.499937 | 1_2:+59080622 | None:intergenic |
| ACTGTGGCTGCTAATGATCT+TGG | 0.500431 | 1_2:-59085271 | Msa0080720:CDS |
| TCGCAACCGAGCTATAAATT+CGG | 0.501875 | 1_2:-59085668 | Msa0080720:CDS |
| CACTCTTCATTATCCAAGGC+AGG | 0.502711 | 1_2:+59082594 | None:intergenic |
| TTAGCAGCCACAGTCCCAAC+AGG | 0.504661 | 1_2:+59085280 | None:intergenic |
| TTATGATAAAATTTGGACAA+TGG | 0.508137 | 1_2:+59085850 | None:intergenic |
| AATTTATCGGAAAACAATCC+AGG | 0.509174 | 1_2:-59081136 | Msa0080720:CDS |
| ACTTATTGTGGGAATCCTGT+TGG | 0.512778 | 1_2:-59085295 | Msa0080720:CDS |
| TCCGGGACAGGGCTTGATGC+CGG | 0.516053 | 1_2:-59084415 | Msa0080720:CDS |
| ACAAGCTTGGAAGTTGTTGA+AGG | 0.518353 | 1_2:-59085329 | Msa0080720:CDS |
| GAAAATTTACCTGCCACAGA+AGG | 0.519159 | 1_2:+59082364 | None:intergenic |
| TTCTGCCAAGCTGTAGTCAC+CGG | 0.521289 | 1_2:+59084114 | None:intergenic |
| GATGCTGTTGTGACTTATTG+TGG | 0.525697 | 1_2:-59085307 | Msa0080720:CDS |
| TAAGCTCACTTGGATTTCAA+GGG | 0.534353 | 1_2:+59083958 | None:intergenic |
| AGTATCTCCGTCAAGAGCTA+CGG | 0.540016 | 1_2:+59084374 | None:intergenic |
| GCAAAATGGGACGAACTTGT+GGG | 0.541013 | 1_2:-59082642 | Msa0080720:CDS |
| AACCGGAAATCCATGTGAGC+TGG | 0.541172 | 1_2:+59082747 | None:intergenic |
| GAACTTGTTGATGGCATCCA+TGG | 0.542167 | 1_2:+59082851 | None:intergenic |
| GTGACTACAGCTTGGCAGAA+AGG | 0.542977 | 1_2:-59084111 | Msa0080720:CDS |
| TGGGAATCCTGTTGGGACTG+TGG | 0.542996 | 1_2:-59085287 | Msa0080720:CDS |
| GACTGCTACAGTCCGGGACA+GGG | 0.544683 | 1_2:-59084426 | Msa0080720:CDS |
| TTTACCTGCCACAGAAGGGT+TGG | 0.544777 | 1_2:+59082369 | None:intergenic |
| TTCCTTTGATAGGATTGTGG+TGG | 0.547461 | 1_2:-59084168 | Msa0080720:intron |
| TTAAGCAATGAACTATGCTA+AGG | 0.547526 | 1_2:+59080693 | None:intergenic |
| CGTTACAAACCTGAATCTAC+AGG | 0.549234 | 1_2:+59084297 | None:intergenic |
| TTGTTCCTTTGATAGGATTG+TGG | 0.550917 | 1_2:-59084171 | Msa0080720:intron |
| GAATCTACAACCAGCTCACA+TGG | 0.553056 | 1_2:-59082757 | Msa0080720:CDS |
| AGTTGTTTGAATTGAAGGAG+TGG | 0.557002 | 1_2:+59085803 | None:intergenic |
| GTTCTAACTTTGAAACTAGC+CGG | 0.557192 | 1_2:+59084396 | None:intergenic |
| ATGCTGTTGTGACTTATTGT+GGG | 0.557530 | 1_2:-59085306 | Msa0080720:CDS |
| ACTGTGGACTGCTACAGTCC+GGG | 0.558800 | 1_2:-59084432 | Msa0080720:CDS |
| ATCAAACATGGACCATAGCT+GGG | 0.561799 | 1_2:-59081109 | Msa0080720:CDS |
| TCGCCACTCTTCATTATCCA+AGG | 0.562211 | 1_2:+59082590 | None:intergenic |
| CTCATGCGGAGAAACAAGCT+TGG | 0.562817 | 1_2:-59085342 | Msa0080720:CDS |
| GTGGACTTAGCAAGAGGGGA+AGG | 0.564522 | 1_2:-59080995 | Msa0080720:CDS |
| TTGTATGATAGACAGGCGTA+TGG | 0.564893 | 1_2:-59083996 | Msa0080720:CDS |
| GATCGTGGCCAACCCTTCTG+TGG | 0.569925 | 1_2:-59082377 | Msa0080720:CDS |
| TACGCGCCGAATTTATAGCT+CGG | 0.572391 | 1_2:+59085662 | None:intergenic |
| GAATTACCCTCCCAATACAT+TGG | 0.574580 | 1_2:+59080779 | None:intergenic |
| AATTCCAGTTCACAAGTTCA+GGG | 0.582026 | 1_2:-59080901 | Msa0080720:three_prime_UTR |
| GGATGTAAGGAACCCAGCTA+TGG | 0.585384 | 1_2:+59081097 | None:intergenic |
| TGTGGTGGATCATCCTATTG+CGG | 0.586255 | 1_2:-59084153 | Msa0080720:CDS |
| ATATATTACCTGCAATTGCA+AGG | 0.586774 | 1_2:+59085135 | None:intergenic |
| GTGGTGGAAAGTGTTGATAA+AGG | 0.588748 | 1_2:-59085403 | Msa0080720:CDS |
| CATTAGACAATATTATTGGG+TGG | 0.590532 | 1_2:-59082922 | Msa0080720:CDS |
| AACACTTGATCATAATTCAA+CGG | 0.592142 | 1_2:+59085238 | None:intergenic |
| TATAAACTATAATTACAAGA+TGG | 0.593192 | 1_2:+59080820 | None:intergenic |
| TTTGAGACTTGGCAGCGCCA+CGG | 0.593521 | 1_2:+59080961 | None:intergenic |
| GAGCACCCCGAGACAGAATG+AGG | 0.593710 | 1_2:-59082685 | Msa0080720:CDS |
| GGCTTAACCAATGTATTGGG+AGG | 0.594397 | 1_2:-59080786 | Msa0080720:three_prime_UTR |
| ATTAGCATGGTGAAGTAGCG+GGG | 0.597440 | 1_2:+59085600 | None:intergenic |
| GTTGAAGAAAATCATTAGCA+TGG | 0.597550 | 1_2:+59085587 | None:intergenic |
| TTTATGACAAAATGCTACAA+AGG | 0.598028 | 1_2:+59080562 | None:intergenic |
| GAAATGCTTGTTGTAACTGA+TGG | 0.600164 | 1_2:-59082999 | Msa0080720:CDS |
| AAAATTTACCTGCCACAGAA+GGG | 0.608289 | 1_2:+59082365 | None:intergenic |
| AAGCTCACTTGGATTTCAAG+GGG | 0.610658 | 1_2:+59083959 | None:intergenic |
| CATATCACAACGGTGGATCG+TGG | 0.611141 | 1_2:-59082392 | Msa0080720:CDS |
| TAGGATTACTGTGTTCATCA+CGG | 0.615915 | 1_2:+59085693 | None:intergenic |
| TCATACAAGAATTTGAGACT+TGG | 0.616222 | 1_2:+59080950 | None:intergenic |
| GTGTTTGTGGACTTAGCAAG+AGG | 0.616361 | 1_2:-59081001 | Msa0080720:CDS |
| CACCGTTGTGATATGACCAA+GGG | 0.622546 | 1_2:+59082400 | None:intergenic |
| AAATTGTTGATCGTGTATGA+AGG | 0.623018 | 1_2:+59085741 | None:intergenic |
| GAGAGGATTTATATTCAGGG+TGG | 0.625974 | 1_2:-59085445 | Msa0080720:CDS |
| TGTTTGTGGACTTAGCAAGA+GGG | 0.627719 | 1_2:-59081000 | Msa0080720:CDS |
| AAGCGTTGTGATTGTTGGTG+TGG | 0.628141 | 1_2:+59085548 | None:intergenic |
| TCATTAGCATGGTGAAGTAG+CGG | 0.628697 | 1_2:+59085598 | None:intergenic |
| ATCCTCCTCAGAAAATAACA+TGG | 0.632654 | 1_2:+59081043 | None:intergenic |
| AGATAGATTTCCAAAATCTG+AGG | 0.633545 | 1_2:-59085885 | None:intergenic |
| TGTATGATAGACAGGCGTAT+GGG | 0.634837 | 1_2:-59083995 | Msa0080720:CDS |
| GATAACCGGTGACTACAGCT+TGG | 0.637165 | 1_2:-59084119 | Msa0080720:CDS |
| GCTTAACCAATGTATTGGGA+GGG | 0.639986 | 1_2:-59080785 | Msa0080720:three_prime_UTR |
| CACTGGCATGCATCAAAATG+GGG | 0.641548 | 1_2:-59081250 | Msa0080720:CDS |
| AATCCAGGCTGTATCAAACA+TGG | 0.641609 | 1_2:-59081121 | Msa0080720:CDS |
| AGAAGAAGAAGAGTCTCATG+CGG | 0.643337 | 1_2:-59085356 | Msa0080720:CDS |
| GAATTTGAAGCCATTAGTGG+TGG | 0.645069 | 1_2:-59085419 | Msa0080720:CDS |
| CAAAACAGAAGAGTACTCCA+TGG | 0.647800 | 1_2:-59082868 | Msa0080720:CDS |
| GTTTGTGGACTTAGCAAGAG+GGG | 0.650529 | 1_2:-59080999 | Msa0080720:CDS |
| CAAAATGGGACGAACTTGTG+GGG | 0.652048 | 1_2:-59082641 | Msa0080720:CDS |
| CCACCGTTGTGATATGACCA+AGG | 0.662625 | 1_2:+59082399 | None:intergenic |
| AATAGCCTCATTCTGTCTCG+GGG | 0.665682 | 1_2:+59082680 | None:intergenic |
| CTGCCTTGGATAATGAAGAG+TGG | 0.668925 | 1_2:-59082593 | Msa0080720:CDS |
| GTGTTCATCACGGAAGAATG+GGG | 0.675315 | 1_2:+59085703 | None:intergenic |
| GTGTATGAAGGTGTAATTCG+GGG | 0.675539 | 1_2:+59085753 | None:intergenic |
| TTAGCATGGTGAAGTAGCGG+GGG | 0.681788 | 1_2:+59085601 | None:intergenic |
| AAATCCAAAGTAGTGAACGT+TGG | 0.682522 | 1_2:+59080645 | None:intergenic |
| GTGTGGTGAAGATTGAAACG+TGG | 0.702226 | 1_2:+59085565 | None:intergenic |
| ACATCATCATCAGTTCACAC+TGG | 0.711068 | 1_2:-59081267 | Msa0080720:intron |
| AGCCCTTGGTCATATCACAA+CGG | 0.731016 | 1_2:-59082402 | Msa0080720:CDS |
| CCTTGGTCATATCACAACGG+TGG | 0.731246 | 1_2:-59082399 | Msa0080720:CDS |
| AAAGAGTTGGGAGAAAACTG+TGG | 0.744457 | 1_2:-59084448 | Msa0080720:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTATTTTATGATAAAATT+TGG | + | chr1_2:59080601-59080620 | None:intergenic | 10.0% |
| !! | CAAAAATTTAACATAAAAAT+AGG | + | chr1_2:59082658-59082677 | None:intergenic | 10.0% |
| !!! | AGAAAAAAATAGATTATTTT+TGG | + | chr1_2:59084167-59084186 | None:intergenic | 10.0% |
| !! | TTAAAAATAATTTCAATTAG+AGG | - | chr1_2:59085691-59085710 | Msa0080720:CDS | 10.0% |
| !! | AATAGAATCTAAGTTTAAAA+TGG | - | chr1_2:59081651-59081670 | Msa0080720:intron | 15.0% |
| !! | TAATAATTTCCATAGTTTAT+AGG | - | chr1_2:59082624-59082643 | Msa0080720:CDS | 15.0% |
| !!! | TTATTTTTAAGTGTTTGTTT+TGG | - | chr1_2:59084206-59084225 | Msa0080720:intron | 15.0% |
| !!! | GTCTATTTATTTTAAAAACA+AGG | - | chr1_2:59084308-59084327 | Msa0080720:CDS | 15.0% |
| !!! | TATTTATTTTAAAAACAAGG+AGG | - | chr1_2:59084311-59084330 | Msa0080720:CDS | 15.0% |
| !!! | ACTCATTTTCTTTAAAAAAA+TGG | - | chr1_2:59084354-59084373 | Msa0080720:CDS | 15.0% |
| !!! | AAGGGATATTTTTTTTAAAA+TGG | + | chr1_2:59084654-59084673 | None:intergenic | 15.0% |
| !!! | TTTCTTTTTTTATCAAACTT+TGG | + | chr1_2:59085004-59085023 | None:intergenic | 15.0% |
| !! | TGATAAAAAAAGAAAGAAAA+AGG | - | chr1_2:59085009-59085028 | Msa0080720:intron | 15.0% |
| !! | CAATATAATAGAAGTTAAAT+TGG | - | chr1_2:59085581-59085600 | Msa0080720:CDS | 15.0% |
| !! | TATAAACTATAATTACAAGA+TGG | + | chr1_2:59085624-59085643 | None:intergenic | 15.0% |
| !! | CTTGTAATTATAGTTTATAT+TGG | - | chr1_2:59085625-59085644 | Msa0080720:CDS | 15.0% |
| !! | TTATGATAAAATTTGGACAA+TGG | + | chr1_2:59080594-59080613 | None:intergenic | 20.0% |
| !! | ATTATGATCAAGTGTTTATT+CGG | - | chr1_2:59081210-59081229 | Msa0080720:CDS | 20.0% |
| !! | TATTTAATTGTGAAAGAGTT+GGG | - | chr1_2:59081981-59082000 | Msa0080720:intron | 20.0% |
| !! | AGTACTTAATAAAGAAACAT+AGG | + | chr1_2:59082514-59082533 | None:intergenic | 20.0% |
| !!! | TCTGTTCTATTTTTAATTGA+AGG | - | chr1_2:59082575-59082594 | Msa0080720:CDS | 20.0% |
| !!! | CTCTATTTTAATTGGTATAA+TGG | - | chr1_2:59082601-59082620 | Msa0080720:CDS | 20.0% |
| !! | AGTAAAAATTACCACATATA+AGG | + | chr1_2:59083383-59083402 | None:intergenic | 20.0% |
| !! | AAAAGATCAATGAAATCTAT+AGG | - | chr1_2:59083548-59083567 | Msa0080720:intron | 20.0% |
| !! | TAAAATGGAGCTTATATTTA+GGG | + | chr1_2:59084639-59084658 | None:intergenic | 20.0% |
| !! | TTAAAATGGAGCTTATATTT+AGG | + | chr1_2:59084640-59084659 | None:intergenic | 20.0% |
| !!! | GTATCTAGTAATTTGAAATA+GGG | + | chr1_2:59084682-59084701 | None:intergenic | 20.0% |
| !!! | TGTATCTAGTAATTTGAAAT+AGG | + | chr1_2:59084683-59084702 | None:intergenic | 20.0% |
| !! | AACATATTGTGCTAATTTAT+TGG | - | chr1_2:59085085-59085104 | Msa0080720:intron | 20.0% |
| !!! | GCTTTTAAAAAATCCAAAAA+TGG | - | chr1_2:59085372-59085391 | Msa0080720:CDS | 20.0% |
| !!! | ATAGTTTATATTGGTTAAGA+TGG | - | chr1_2:59085634-59085653 | Msa0080720:CDS | 20.0% |
| ! | TAAGAAGTTGTTTGAATTGA+AGG | + | chr1_2:59080646-59080665 | None:intergenic | 25.0% |
| ! | ATGAATTTGAAGAACTTGTA+AGG | + | chr1_2:59080809-59080828 | None:intergenic | 25.0% |
| !! | TGAATGAGAATAATTTTGAG+AGG | - | chr1_2:59080979-59080998 | Msa0080720:CDS | 25.0% |
| !!! | TTTTGAGAGGATTTATATTC+AGG | - | chr1_2:59080992-59081011 | Msa0080720:CDS | 25.0% |
| ! | TTTGAGAGGATTTATATTCA+GGG | - | chr1_2:59080993-59081012 | Msa0080720:CDS | 25.0% |
| ! | AACACTTGATCATAATTCAA+CGG | + | chr1_2:59081206-59081225 | None:intergenic | 25.0% |
| ! | TTATGATCAAGTGTTTATTC+GGG | - | chr1_2:59081211-59081230 | Msa0080720:CDS | 25.0% |
| ! | AATTCAATCACTGCTTTATA+AGG | - | chr1_2:59081357-59081376 | Msa0080720:intron | 25.0% |
| ! | ATTCAATCACTGCTTTATAA+GGG | - | chr1_2:59081358-59081377 | Msa0080720:intron | 25.0% |
| !! | GAATCTAAGTTTAAAATGGT+TGG | - | chr1_2:59081655-59081674 | Msa0080720:intron | 25.0% |
| !!! | TTTTTTTTAGTGTCAGTGTA+TGG | - | chr1_2:59081713-59081732 | Msa0080720:intron | 25.0% |
| !! | TAAATGTTGCTTAAATAGCT+GGG | + | chr1_2:59081786-59081805 | None:intergenic | 25.0% |
| ! | TATTTAAGCAACATTTAGCT+CGG | - | chr1_2:59081789-59081808 | Msa0080720:intron | 25.0% |
| ! | GTATTTAATTGTGAAAGAGT+TGG | - | chr1_2:59081980-59081999 | Msa0080720:intron | 25.0% |
| !!! | AAGTTTTAGATCCTGATTTT+GGG | - | chr1_2:59082097-59082116 | Msa0080720:intron | 25.0% |
| !!! | CTATTTTTTTAGATTGCTCT+TGG | + | chr1_2:59082224-59082243 | None:intergenic | 25.0% |
| !!! | TCTTTTTTTGTTCCTTTGAT+AGG | - | chr1_2:59082263-59082282 | Msa0080720:intron | 25.0% |
| !! | CTTTCAATCTTTTATGCATT+TGG | - | chr1_2:59082532-59082551 | Msa0080720:intron | 25.0% |
| ! | TGAGTACAATACTAAAACTA+GGG | - | chr1_2:59082725-59082744 | Msa0080720:CDS | 25.0% |
| !!! | TTGTGAACATATTTTGAAAG+TGG | - | chr1_2:59083029-59083048 | Msa0080720:CDS | 25.0% |
| !!! | TGTGAACATATTTTGAAAGT+GGG | - | chr1_2:59083030-59083049 | Msa0080720:CDS | 25.0% |
| ! | GAAATTGTAATCGAAATCTT+TGG | - | chr1_2:59083307-59083326 | Msa0080720:intron | 25.0% |
| !! | GCAAGTGAAAAATTGTTATT+GGG | + | chr1_2:59083341-59083360 | None:intergenic | 25.0% |
| ! | AGCAAGTGAAAAATTGTTAT+TGG | + | chr1_2:59083342-59083361 | None:intergenic | 25.0% |
| !! | TGTGGTAATTTTTACTTGAT+AGG | - | chr1_2:59083387-59083406 | Msa0080720:intron | 25.0% |
| ! | TCCACATTAGACAATATTAT+TGG | - | chr1_2:59083515-59083534 | Msa0080720:intron | 25.0% |
| ! | CCACATTAGACAATATTATT+GGG | - | chr1_2:59083516-59083535 | Msa0080720:intron | 25.0% |
| ! | AAAAAGGTGGATATCTAATT+GGG | - | chr1_2:59083662-59083681 | Msa0080720:intron | 25.0% |
| ! | TAAATCTGATAGAAGCAAAA+TGG | - | chr1_2:59083785-59083804 | Msa0080720:intron | 25.0% |
| ! | AAATCTGATAGAAGCAAAAT+GGG | - | chr1_2:59083786-59083805 | Msa0080720:intron | 25.0% |
| !! | TTATAGTCAGAATTGTTTCT+AGG | - | chr1_2:59083982-59084001 | Msa0080720:CDS | 25.0% |
| !! | TGATGGCAATTGATTTATTA+AGG | - | chr1_2:59084102-59084121 | Msa0080720:CDS | 25.0% |
| ! | TTAAGGAAAGTTCGAATATT+TGG | - | chr1_2:59084119-59084138 | Msa0080720:CDS | 25.0% |
| !! | CCTAATAGCTTTTCATTTTA+GGG | + | chr1_2:59084272-59084291 | None:intergenic | 25.0% |
| !! | TCCTAATAGCTTTTCATTTT+AGG | + | chr1_2:59084273-59084292 | None:intergenic | 25.0% |
| !! | ATTTGAAATAGGGCTTATAA+GGG | + | chr1_2:59084672-59084691 | None:intergenic | 25.0% |
| !! | AATTTGAAATAGGGCTTATA+AGG | + | chr1_2:59084673-59084692 | None:intergenic | 25.0% |
| ! | TGAATACATCTATACACAAA+AGG | - | chr1_2:59084879-59084898 | Msa0080720:intron | 25.0% |
| !!! | TGGATTTTTTAAAAGCATCT+TGG | + | chr1_2:59085368-59085387 | None:intergenic | 25.0% |
| !!! | GGTATTCAGTAATTTTTAAG+AGG | + | chr1_2:59085730-59085749 | None:intergenic | 25.0% |
| ! | TTTATGACAAAATGCTACAA+AGG | + | chr1_2:59085882-59085901 | None:intergenic | 25.0% |
| ! | TGATTCTTTACCTCAGATTT+TGG | + | chr1_2:59080569-59080588 | None:intergenic | 30.0% |
| AAATTGTTGATCGTGTATGA+AGG | + | chr1_2:59080703-59080722 | None:intergenic | 30.0% | |
| GTTGAAGAAAATCATTAGCA+TGG | + | chr1_2:59080857-59080876 | None:intergenic | 30.0% | |
| !!! | ACAACGCTTTTAGAATACTA+GGG | - | chr1_2:59080907-59080926 | Msa0080720:three_prime_UTR | 30.0% |
| !!! | TTTTAGAATACTAGGGTTTC+AGG | - | chr1_2:59080914-59080933 | Msa0080720:three_prime_UTR | 30.0% |
| ! | TTTAGAATACTAGGGTTTCA+GGG | - | chr1_2:59080915-59080934 | Msa0080720:three_prime_UTR | 30.0% |
| ATATATTACCTGCAATTGCA+AGG | + | chr1_2:59081309-59081328 | None:intergenic | 30.0% | |
| AACGATTAGGTAACTTTGAA+GGG | + | chr1_2:59081336-59081355 | None:intergenic | 30.0% | |
| AGTGATTGAATTGAACGATT+AGG | + | chr1_2:59081349-59081368 | None:intergenic | 30.0% | |
| ! | AGTTGTTTCACAAGTTATCA+TGG | + | chr1_2:59081511-59081530 | None:intergenic | 30.0% |
| ! | CTAAGTTTAAAATGGTTGGT+TGG | - | chr1_2:59081659-59081678 | Msa0080720:intron | 30.0% |
| TAGCTGGGATGAATAAATAA+CGG | + | chr1_2:59081771-59081790 | None:intergenic | 30.0% | |
| ! | CTAAATGTTGCTTAAATAGC+TGG | + | chr1_2:59081787-59081806 | None:intergenic | 30.0% |
| ! | ATTTAAGCAACATTTAGCTC+GGG | - | chr1_2:59081790-59081809 | Msa0080720:intron | 30.0% |
| ! | AGCATAACAACTCTTTCTTT+TGG | + | chr1_2:59081895-59081914 | None:intergenic | 30.0% |
| !!! | GAAGTTTTAGATCCTGATTT+TGG | - | chr1_2:59082096-59082115 | Msa0080720:intron | 30.0% |
| !!! | AGTTTTAGATCCTGATTTTG+GGG | - | chr1_2:59082098-59082117 | Msa0080720:intron | 30.0% |
| CTTAAATTGTGTCTAACAGA+TGG | - | chr1_2:59082383-59082402 | Msa0080720:CDS | 30.0% | |
| !!! | GAAGGATGCTCTATTTTAAT+TGG | - | chr1_2:59082593-59082612 | Msa0080720:CDS | 30.0% |
| GAGCATATACCTATAAACTA+TGG | + | chr1_2:59082636-59082655 | None:intergenic | 30.0% | |
| GTGAGTACAATACTAAAACT+AGG | - | chr1_2:59082724-59082743 | Msa0080720:CDS | 30.0% | |
| !! | GTCTTATTTGTAGCATGTTT+GGG | - | chr1_2:59082790-59082809 | Msa0080720:CDS | 30.0% |
| TGATATTTGACAGTCGAATT+AGG | - | chr1_2:59083005-59083024 | Msa0080720:CDS | 30.0% | |
| !! | GTGAACATATTTTGAAAGTG+GGG | - | chr1_2:59083031-59083050 | Msa0080720:CDS | 30.0% |
| GTGTCAAACAACAATAGATT+AGG | - | chr1_2:59083136-59083155 | Msa0080720:intron | 30.0% | |
| ! | AACAGAAAACTTGTTTGAGA+AGG | + | chr1_2:59083259-59083278 | None:intergenic | 30.0% |
| ! | AGTGAAAAATTGTTATTGGG+TGG | + | chr1_2:59083338-59083357 | None:intergenic | 30.0% |
| CCCAATAATATTGTCTAATG+TGG | + | chr1_2:59083519-59083538 | None:intergenic | 30.0% | |
| CATTAGACAATATTATTGGG+TGG | - | chr1_2:59083519-59083538 | Msa0080720:intron | 30.0% | |
| ! | ATTAGATATCCACCTTTTTC+AGG | + | chr1_2:59083661-59083680 | None:intergenic | 30.0% |
| GAAAAAGGTGGATATCTAAT+TGG | - | chr1_2:59083661-59083680 | Msa0080720:intron | 30.0% | |
| ! | TTTTCACACTTGGAAATCTT+TGG | - | chr1_2:59083716-59083735 | Msa0080720:intron | 30.0% |
| ! | GTGTAACATTTCCTTTTTGT+TGG | - | chr1_2:59083914-59083933 | Msa0080720:intron | 30.0% |
| TCAAAGATATGCCAACAAAA+AGG | + | chr1_2:59083928-59083947 | None:intergenic | 30.0% | |
| ! | AATATTTGGTCCGTTTGTTT+TGG | - | chr1_2:59084133-59084152 | Msa0080720:CDS | 30.0% |
| GGAAAAGAATCCAAAACAAA+CGG | + | chr1_2:59084146-59084165 | None:intergenic | 30.0% | |
| CCCTAAAATGAAAAGCTATT+AGG | - | chr1_2:59084269-59084288 | Msa0080720:intron | 30.0% | |
| ! | GCATTAATAAGGGGTATATT+TGG | + | chr1_2:59084725-59084744 | None:intergenic | 30.0% |
| ! | TATGCTAAGGCATTAATAAG+GGG | + | chr1_2:59084734-59084753 | None:intergenic | 30.0% |
| ! | CTATGCTAAGGCATTAATAA+GGG | + | chr1_2:59084735-59084754 | None:intergenic | 30.0% |
| ! | ACTATGCTAAGGCATTAATA+AGG | + | chr1_2:59084736-59084755 | None:intergenic | 30.0% |
| GTATATTACCTATGAGTAAG+TGG | + | chr1_2:59084771-59084790 | None:intergenic | 30.0% | |
| AATTCCAGTTCATAAGTTCA+GGG | - | chr1_2:59084813-59084832 | Msa0080720:intron | 30.0% | |
| ! | GACTATTGCTAATTTGTGTT+TGG | - | chr1_2:59084839-59084858 | Msa0080720:intron | 30.0% |
| !! | AGATATGTGAAAAGTGTCAA+AGG | - | chr1_2:59084962-59084981 | Msa0080720:intron | 30.0% |
| !! | GATATGTGAAAAGTGTCAAA+GGG | - | chr1_2:59084963-59084982 | Msa0080720:intron | 30.0% |
| AAAGAAAGAAAAAGGAACGA+AGG | - | chr1_2:59085017-59085036 | Msa0080720:intron | 30.0% | |
| GAACGAGTATCATAATATTC+AGG | + | chr1_2:59085280-59085299 | None:intergenic | 30.0% | |
| GAATATTATGATACTCGTTC+TGG | - | chr1_2:59085280-59085299 | Msa0080720:CDS | 30.0% | |
| !! | ACTCGTTCTGGAAAATTTAT+CGG | - | chr1_2:59085292-59085311 | Msa0080720:CDS | 30.0% |
| AATTTATCGGAAAACAATCC+AGG | - | chr1_2:59085305-59085324 | Msa0080720:CDS | 30.0% | |
| !! | TTAAAAGCATCTTGGATGTA+AGG | + | chr1_2:59085360-59085379 | None:intergenic | 30.0% |
| CTTCTTGATATATGTGTTTG+TGG | - | chr1_2:59085427-59085446 | Msa0080720:CDS | 30.0% | |
| ! | TCATACAAGAATTTGAGACT+TGG | + | chr1_2:59085494-59085513 | None:intergenic | 30.0% |
| TTAAGCAATGAACTATGCTA+AGG | + | chr1_2:59085751-59085770 | None:intergenic | 30.0% | |
| ! | CTTAAGATTTTCACTTACTC+AGG | - | chr1_2:59085766-59085785 | Msa0080720:five_prime_UTR | 30.0% |
| TTAGTATACATAGCTGTAAG+TGG | + | chr1_2:59085822-59085841 | None:intergenic | 30.0% | |
| AGTTGTTTGAATTGAAGGAG+TGG | + | chr1_2:59080641-59080660 | None:intergenic | 35.0% | |
| ! | TCGTGTATGAAGGTGTAATT+CGG | + | chr1_2:59080693-59080712 | None:intergenic | 35.0% |
| TAGGATTACTGTGTTCATCA+CGG | + | chr1_2:59080751-59080770 | None:intergenic | 35.0% | |
| !! | TCTAAAAGCGTTGTGATTGT+TGG | + | chr1_2:59080901-59080920 | None:intergenic | 35.0% |
| !!! | CACAACGCTTTTAGAATACT+AGG | - | chr1_2:59080906-59080925 | Msa0080720:three_prime_UTR | 35.0% |
| ! | TGTGAATTTGAAGCCATTAG+TGG | - | chr1_2:59081019-59081038 | Msa0080720:CDS | 35.0% |
| ATGCTGTTGTGACTTATTGT+GGG | - | chr1_2:59081135-59081154 | Msa0080720:CDS | 35.0% | |
| !!! | GCTCTTGCTTTTTTGCTTAA+AGG | - | chr1_2:59081248-59081267 | Msa0080720:CDS | 35.0% |
| GAACGATTAGGTAACTTTGA+AGG | + | chr1_2:59081337-59081356 | None:intergenic | 35.0% | |
| AATCACTGCTTTATAAGGGT+CGG | - | chr1_2:59081362-59081381 | Msa0080720:intron | 35.0% | |
| !! | TTTTTAGTGTCAGTGTATGG+TGG | - | chr1_2:59081716-59081735 | Msa0080720:intron | 35.0% |
| !! | GTTCTAACTTTGAAACTAGC+CGG | + | chr1_2:59082048-59082067 | None:intergenic | 35.0% |
| TTGTTCCTTTGATAGGATTG+TGG | - | chr1_2:59082270-59082289 | Msa0080720:intron | 35.0% | |
| TAAGCTCACTTGGATTTCAA+GGG | + | chr1_2:59082486-59082505 | None:intergenic | 35.0% | |
| TTAAGCTCACTTGGATTTCA+AGG | + | chr1_2:59082487-59082506 | None:intergenic | 35.0% | |
| ! | ATAGGTTAGTTAAGCTCACT+TGG | + | chr1_2:59082496-59082515 | None:intergenic | 35.0% |
| ATGCTACAAATAAGACCCTT+GGG | + | chr1_2:59082786-59082805 | None:intergenic | 35.0% | |
| !! | GGTCTTATTTGTAGCATGTT+TGG | - | chr1_2:59082789-59082808 | Msa0080720:CDS | 35.0% |
| AAATATTCGGCCAGAATATC+CGG | + | chr1_2:59082883-59082902 | None:intergenic | 35.0% | |
| ! | TGCCCTTATTTATGATATGG+CGG | - | chr1_2:59082950-59082969 | Msa0080720:CDS | 35.0% |
| CTCCGCCATATCATAAATAA+GGG | + | chr1_2:59082955-59082974 | None:intergenic | 35.0% | |
| CACATATAAGGAAAACCAAC+AGG | + | chr1_2:59083371-59083390 | None:intergenic | 35.0% | |
| !!! | CTGTTGGTTTTCCTTATATG+TGG | - | chr1_2:59083369-59083388 | Msa0080720:intron | 35.0% |
| !! | GAAATGCTTGTTGTAACTGA+TGG | - | chr1_2:59083442-59083461 | Msa0080720:intron | 35.0% |
| !! | AATGGCTCTAACAAGATCAT+TGG | + | chr1_2:59083470-59083489 | None:intergenic | 35.0% |
| !! | GTAGATGTTGAACTTGTTGA+TGG | + | chr1_2:59083602-59083621 | None:intergenic | 35.0% |
| ACAAATTCCTTTCTGGGTAA+TGG | - | chr1_2:59083627-59083646 | Msa0080720:intron | 35.0% | |
| !! | ATGGATTGGATTCCTGAAAA+AGG | - | chr1_2:59083646-59083665 | Msa0080720:intron | 35.0% |
| GATTTCCAAGTGTGAAAAAC+CGG | + | chr1_2:59083714-59083733 | None:intergenic | 35.0% | |
| AAAATAGCCTCATTCTGTCT+CGG | + | chr1_2:59083766-59083785 | None:intergenic | 35.0% | |
| GCAGGATAACATATCTTAAG+AGG | + | chr1_2:59083832-59083851 | None:intergenic | 35.0% | |
| TAAGATATGTTATCCTGCCT+TGG | - | chr1_2:59083834-59083853 | Msa0080720:intron | 35.0% | |
| CCAGAACTTACGTATTCTTT+GGG | + | chr1_2:59083894-59083913 | None:intergenic | 35.0% | |
| CCAAAGAATACGTAAGTTCT+GGG | - | chr1_2:59083892-59083911 | Msa0080720:intron | 35.0% | |
| AAAATTTACCTGCCACAGAA+GGG | + | chr1_2:59084079-59084098 | None:intergenic | 35.0% | |
| ! | GGCAGGTAAATTTTCTATGA+TGG | - | chr1_2:59084085-59084104 | Msa0080720:CDS | 35.0% |
| CAAAGTGCATAACCAACAAT+GGG | + | chr1_2:59084500-59084519 | None:intergenic | 35.0% | |
| GGTACAGTAGTATTTAGACA+AGG | + | chr1_2:59084523-59084542 | None:intergenic | 35.0% | |
| TACTGTACCCTTAAATCTCA+AGG | - | chr1_2:59084534-59084553 | Msa0080720:intron | 35.0% | |
| GTTGGATTTGTAACATGCTA+TGG | - | chr1_2:59084565-59084584 | Msa0080720:intron | 35.0% | |
| CTATGGTATAGCACTTACAA+GGG | - | chr1_2:59084582-59084601 | Msa0080720:intron | 35.0% | |
| TAATGCCTTAGCATAGTTCA+TGG | - | chr1_2:59084739-59084758 | Msa0080720:intron | 35.0% | |
| ATTACCTATGAGTAAGTGGA+GGG | + | chr1_2:59084767-59084786 | None:intergenic | 35.0% | |
| TATTACCTATGAGTAAGTGG+AGG | + | chr1_2:59084768-59084787 | None:intergenic | 35.0% | |
| ! | CTGACTTTTCACTTACTCAT+AGG | + | chr1_2:59084793-59084812 | None:intergenic | 35.0% |
| GAATTCCAGTTCATAAGTTC+AGG | - | chr1_2:59084812-59084831 | Msa0080720:intron | 35.0% | |
| TGTCAAAGGGACTTATATGA+AGG | - | chr1_2:59084976-59084995 | Msa0080720:intron | 35.0% | |
| AAGGAACGAAGGTAGTAATA+TGG | - | chr1_2:59085028-59085047 | Msa0080720:intron | 35.0% | |
| CGTAATTAATGGAGAGATCA+CGG | - | chr1_2:59085060-59085079 | Msa0080720:intron | 35.0% | |
| GTAATTAATGGAGAGATCAC+GGG | - | chr1_2:59085061-59085080 | Msa0080720:intron | 35.0% | |
| ! | GACTTGATAGTTGATATGCA+AGG | + | chr1_2:59085116-59085135 | None:intergenic | 35.0% |
| !! | AATAACATGGACGCCATTTT+TGG | + | chr1_2:59085388-59085407 | None:intergenic | 35.0% |
| ATCCTCCTCAGAAAATAACA+TGG | + | chr1_2:59085401-59085420 | None:intergenic | 35.0% | |
| TGATGCAAGTGTGCATTATT+TGG | - | chr1_2:59085511-59085530 | Msa0080720:CDS | 35.0% | |
| AATTCCAGTTCACAAGTTCA+GGG | - | chr1_2:59085540-59085559 | Msa0080720:CDS | 35.0% | |
| AGATGGCTTAACCAATGTAT+TGG | - | chr1_2:59085651-59085670 | Msa0080720:CDS | 35.0% | |
| GATGGCTTAACCAATGTATT+GGG | - | chr1_2:59085652-59085671 | Msa0080720:CDS | 35.0% | |
| AAATCCAAAGTAGTGAACGT+TGG | + | chr1_2:59085799-59085818 | None:intergenic | 35.0% | |
| ! | GTGTATGAAGGTGTAATTCG+GGG | + | chr1_2:59080691-59080710 | None:intergenic | 40.0% |
| ! | CGTGTATGAAGGTGTAATTC+GGG | + | chr1_2:59080692-59080711 | None:intergenic | 40.0% |
| TGTGTTCATCACGGAAGAAT+GGG | + | chr1_2:59080742-59080761 | None:intergenic | 40.0% | |
| TTATAGCTCGGTTGCGAATT+AGG | + | chr1_2:59080770-59080789 | None:intergenic | 40.0% | |
| TCGCAACCGAGCTATAAATT+CGG | - | chr1_2:59080773-59080792 | Msa0080720:three_prime_UTR | 40.0% | |
| TCATTAGCATGGTGAAGTAG+CGG | + | chr1_2:59080846-59080865 | None:intergenic | 40.0% | |
| GAGAGGATTTATATTCAGGG+TGG | - | chr1_2:59080996-59081015 | Msa0080720:CDS | 40.0% | |
| ! | GAATTTGAAGCCATTAGTGG+TGG | - | chr1_2:59081022-59081041 | Msa0080720:CDS | 40.0% |
| TCAACACTTTCCACCACTAA+TGG | + | chr1_2:59081035-59081054 | None:intergenic | 40.0% | |
| !! | GTGGTGGAAAGTGTTGATAA+AGG | - | chr1_2:59081038-59081057 | Msa0080720:CDS | 40.0% |
| AGAAGAAGAAGAGTCTCATG+CGG | - | chr1_2:59081085-59081104 | Msa0080720:CDS | 40.0% | |
| ACAAGCTTGGAAGTTGTTGA+AGG | - | chr1_2:59081112-59081131 | Msa0080720:CDS | 40.0% | |
| GATGCTGTTGTGACTTATTG+TGG | - | chr1_2:59081134-59081153 | Msa0080720:CDS | 40.0% | |
| ACTTATTGTGGGAATCCTGT+TGG | - | chr1_2:59081146-59081165 | Msa0080720:CDS | 40.0% | |
| CTTATTGTGGGAATCCTGTT+GGG | - | chr1_2:59081147-59081166 | Msa0080720:CDS | 40.0% | |
| ! | TATTCGGGATTTTGTTCCGT+CGG | - | chr1_2:59081226-59081245 | Msa0080720:CDS | 40.0% |
| TCTTCATACCTTGCAATTGC+AGG | - | chr1_2:59081298-59081317 | Msa0080720:intron | 40.0% | |
| ! | AACATTTAGCTCGGGATACT+GGG | - | chr1_2:59081798-59081817 | Msa0080720:intron | 40.0% |
| AAATCCGATGGCTAAATGCT+AGG | - | chr1_2:59081831-59081850 | Msa0080720:intron | 40.0% | |
| TTCTCCTAGCATTTAGCCAT+CGG | + | chr1_2:59081838-59081857 | None:intergenic | 40.0% | |
| AAAGAGTTGGGAGAAAACTG+TGG | - | chr1_2:59081993-59082012 | Msa0080720:intron | 40.0% | |
| ! | ATAGCTGATTCCCCAAAATC+AGG | + | chr1_2:59082111-59082130 | None:intergenic | 40.0% |
| !! | GATTTTGGGGAATCAGCTAT+TGG | - | chr1_2:59082111-59082130 | Msa0080720:intron | 40.0% |
| CGTTACAAACCTGAATCTAC+AGG | + | chr1_2:59082147-59082166 | None:intergenic | 40.0% | |
| TTCCTTTGATAGGATTGTGG+TGG | - | chr1_2:59082273-59082292 | Msa0080720:intron | 40.0% | |
| ATCCACCACAATCCTATCAA+AGG | + | chr1_2:59082278-59082297 | None:intergenic | 40.0% | |
| !! | GAAAGGGTTGATGTTCAAAC+AGG | - | chr1_2:59082347-59082366 | Msa0080720:intron | 40.0% |
| CATCTTTGCTAGTCACTGAT+GGG | - | chr1_2:59082420-59082439 | Msa0080720:intron | 40.0% | |
| ! | ATGGGTCTTGTATGATAGAC+AGG | - | chr1_2:59082438-59082457 | Msa0080720:intron | 40.0% |
| TTGTATGATAGACAGGCGTA+TGG | - | chr1_2:59082445-59082464 | Msa0080720:intron | 40.0% | |
| TGTATGATAGACAGGCGTAT+GGG | - | chr1_2:59082446-59082465 | Msa0080720:intron | 40.0% | |
| AAGCTCACTTGGATTTCAAG+GGG | + | chr1_2:59082485-59082504 | None:intergenic | 40.0% | |
| CTAGGGTTTAGCATCTGATT+AGG | - | chr1_2:59082742-59082761 | Msa0080720:CDS | 40.0% | |
| ATCTGATTAGGTCATTCCCT+AGG | - | chr1_2:59082754-59082773 | Msa0080720:CDS | 40.0% | |
| CATGCTACAAATAAGACCCT+TGG | + | chr1_2:59082787-59082806 | None:intergenic | 40.0% | |
| ACGCTATGATAGGCAACTTA+GGG | + | chr1_2:59082837-59082856 | None:intergenic | 40.0% | |
| TACGCTATGATAGGCAACTT+AGG | + | chr1_2:59082838-59082857 | None:intergenic | 40.0% | |
| ! | TACGCGTTTTACGCTATGAT+AGG | + | chr1_2:59082847-59082866 | None:intergenic | 40.0% |
| GAACCTTGGGGCTAAATATT+CGG | + | chr1_2:59082896-59082915 | None:intergenic | 40.0% | |
| GAATATTTAGCCCCAAGGTT+CGG | - | chr1_2:59082895-59082914 | Msa0080720:CDS | 40.0% | |
| ! | GGGTGCCCTTATTTATGATA+TGG | - | chr1_2:59082947-59082966 | Msa0080720:CDS | 40.0% |
| GCTCCGCCATATCATAAATA+AGG | + | chr1_2:59082956-59082975 | None:intergenic | 40.0% | |
| ! | ATGGTGACAATAGTGGAAGA+GGG | - | chr1_2:59083082-59083101 | Msa0080720:intron | 40.0% |
| TGCACTCAGTCTGTTGTTAA+TGG | + | chr1_2:59083488-59083507 | None:intergenic | 40.0% | |
| !! | CAAAACAGAAGAGTACTCCA+TGG | - | chr1_2:59083573-59083592 | Msa0080720:intron | 40.0% |
| ACCCAGAACAAATTCCTTTC+TGG | - | chr1_2:59083620-59083639 | Msa0080720:intron | 40.0% | |
| ! | CCCAGAAAGGAATTTGTTCT+GGG | + | chr1_2:59083624-59083643 | None:intergenic | 40.0% |
| CCCAGAACAAATTCCTTTCT+GGG | - | chr1_2:59083621-59083640 | Msa0080720:intron | 40.0% | |
| ! | ACCCAGAAAGGAATTTGTTC+TGG | + | chr1_2:59083625-59083644 | None:intergenic | 40.0% |
| !! | TTCCTTTCTGGGTAATGGAT+TGG | - | chr1_2:59083632-59083651 | Msa0080720:intron | 40.0% |
| ATCCAATCCATTACCCAGAA+AGG | + | chr1_2:59083637-59083656 | None:intergenic | 40.0% | |
| GATTGGATTCCTGAAAAAGG+TGG | - | chr1_2:59083649-59083668 | Msa0080720:intron | 40.0% | |
| ! | GATTTCCGGTTTTTCACACT+TGG | - | chr1_2:59083706-59083725 | Msa0080720:intron | 40.0% |
| GGTGCTCAGAGATGAAATAA+TGG | + | chr1_2:59083743-59083762 | None:intergenic | 40.0% | |
| AAATAGCCTCATTCTGTCTC+GGG | + | chr1_2:59083765-59083784 | None:intergenic | 40.0% | |
| GAAGAGTGGCGAATAATTAC+TGG | - | chr1_2:59083862-59083881 | Msa0080720:intron | 40.0% | |
| CCCAAAGAATACGTAAGTTC+TGG | - | chr1_2:59083891-59083910 | Msa0080720:intron | 40.0% | |
| CCCAGAACTTACGTATTCTT+TGG | + | chr1_2:59083895-59083914 | None:intergenic | 40.0% | |
| GAAAATTTACCTGCCACAGA+AGG | + | chr1_2:59084080-59084099 | None:intergenic | 40.0% | |
| AAAACAAACGCACCCATTGT+TGG | - | chr1_2:59084485-59084504 | Msa0080720:intron | 40.0% | |
| GCAAAGTGCATAACCAACAA+TGG | + | chr1_2:59084501-59084520 | None:intergenic | 40.0% | |
| GCTATGGTATAGCACTTACA+AGG | - | chr1_2:59084581-59084600 | Msa0080720:intron | 40.0% | |
| CATACCCTGAACTTATGAAC+TGG | + | chr1_2:59084820-59084839 | None:intergenic | 40.0% | |
| GGTCGAAGACTCGTAATTAA+TGG | - | chr1_2:59085049-59085068 | Msa0080720:intron | 40.0% | |
| ACATCATCATCAGTTCACAC+TGG | - | chr1_2:59085174-59085193 | Msa0080720:CDS | 40.0% | |
| ACACTGGCATGCATCAAAAT+GGG | - | chr1_2:59085190-59085209 | Msa0080720:CDS | 40.0% | |
| GGCTAAATCAACTGCTTTCT+GGG | + | chr1_2:59085230-59085249 | None:intergenic | 40.0% | |
| ! | ATCAACTGGCAGTCTTTTCT+CGG | + | chr1_2:59085251-59085270 | None:intergenic | 40.0% |
| ! | AAAGACTGCCAGTTGATTCT+TGG | - | chr1_2:59085254-59085273 | Msa0080720:CDS | 40.0% |
| TATTCAGGCCAAGAATCAAC+TGG | + | chr1_2:59085265-59085284 | None:intergenic | 40.0% | |
| AATCCAGGCTGTATCAAACA+TGG | - | chr1_2:59085320-59085339 | Msa0080720:CDS | 40.0% | |
| TATCAAACATGGACCATAGC+TGG | - | chr1_2:59085331-59085350 | Msa0080720:CDS | 40.0% | |
| ATCAAACATGGACCATAGCT+GGG | - | chr1_2:59085332-59085351 | Msa0080720:CDS | 40.0% | |
| !!! | GTCCATGTTATTTTCTGAGG+AGG | - | chr1_2:59085396-59085415 | Msa0080720:CDS | 40.0% |
| TGTTTGTGGACTTAGCAAGA+GGG | - | chr1_2:59085441-59085460 | Msa0080720:CDS | 40.0% | |
| GAATTCCAGTTCACAAGTTC+AGG | - | chr1_2:59085539-59085558 | Msa0080720:CDS | 40.0% | |
| GCTTAACCAATGTATTGGGA+GGG | - | chr1_2:59085656-59085675 | Msa0080720:CDS | 40.0% | |
| GAATTACCCTCCCAATACAT+TGG | + | chr1_2:59085665-59085684 | None:intergenic | 40.0% | |
| ACTACCAACGTTCACTACTT+TGG | - | chr1_2:59085792-59085811 | Msa0080720:five_prime_UTR | 40.0% | |
| GTGTTCATCACGGAAGAATG+GGG | + | chr1_2:59080741-59080760 | None:intergenic | 45.0% | |
| CTGTGTTCATCACGGAAGAA+TGG | + | chr1_2:59080743-59080762 | None:intergenic | 45.0% | |
| TACGCGCCGAATTTATAGCT+CGG | + | chr1_2:59080782-59080801 | None:intergenic | 45.0% | |
| ATTAGCATGGTGAAGTAGCG+GGG | + | chr1_2:59080844-59080863 | None:intergenic | 45.0% | |
| CATTAGCATGGTGAAGTAGC+GGG | + | chr1_2:59080845-59080864 | None:intergenic | 45.0% | |
| GTGTGGTGAAGATTGAAACG+TGG | + | chr1_2:59080879-59080898 | None:intergenic | 45.0% | |
| ! | AAGCGTTGTGATTGTTGGTG+TGG | + | chr1_2:59080896-59080915 | None:intergenic | 45.0% |
| ACTGTGGCTGCTAATGATCT+TGG | - | chr1_2:59081170-59081189 | Msa0080720:CDS | 45.0% | |
| AGCAAAAAAGCAAGAGCCGA+CGG | + | chr1_2:59081245-59081264 | None:intergenic | 45.0% | |
| ! | CAACATTTAGCTCGGGATAC+TGG | - | chr1_2:59081797-59081816 | Msa0080720:intron | 45.0% |
| ! | ACATTTAGCTCGGGATACTG+GGG | - | chr1_2:59081799-59081818 | Msa0080720:intron | 45.0% |
| GGGATCAATGGTAAATCCGA+TGG | - | chr1_2:59081819-59081838 | Msa0080720:intron | 45.0% | |
| GTTAGAACCGTAGCTCTTGA+CGG | - | chr1_2:59082060-59082079 | Msa0080720:intron | 45.0% | |
| AGTATCTCCGTCAAGAGCTA+CGG | + | chr1_2:59082070-59082089 | None:intergenic | 45.0% | |
| !! | TGTGGTGGATCATCCTATTG+CGG | - | chr1_2:59082288-59082307 | Msa0080720:intron | 45.0% |
| ATCATCCTATTGCGGGCTTA+TGG | - | chr1_2:59082296-59082315 | Msa0080720:intron | 45.0% | |
| TCATCCTATTGCGGGCTTAT+GGG | - | chr1_2:59082297-59082316 | Msa0080720:intron | 45.0% | |
| TGACTACAGCTTGGCAGAAA+GGG | - | chr1_2:59082331-59082350 | Msa0080720:intron | 45.0% | |
| CCATCAGTGACTAGCAAAGA+TGG | + | chr1_2:59082422-59082441 | None:intergenic | 45.0% | |
| CCATCTTTGCTAGTCACTGA+TGG | - | chr1_2:59082419-59082438 | Msa0080720:intron | 45.0% | |
| ATTCCCTAGGAATGATCCCA+AGG | - | chr1_2:59082767-59082786 | Msa0080720:CDS | 45.0% | |
| TTCCCTAGGAATGATCCCAA+GGG | - | chr1_2:59082768-59082787 | Msa0080720:CDS | 45.0% | |
| AACTTAGGGAGTAAGTTGCG+TGG | + | chr1_2:59082823-59082842 | None:intergenic | 45.0% | |
| CCAGAATATCCGGATATGAG+GGG | + | chr1_2:59082873-59082892 | None:intergenic | 45.0% | |
| GCCAGAATATCCGGATATGA+GGG | + | chr1_2:59082874-59082893 | None:intergenic | 45.0% | |
| CCTTATACCCCAAACCATCA+AGG | + | chr1_2:59082921-59082940 | None:intergenic | 45.0% | |
| ! | CCTTGATGGTTTGGGGTATA+AGG | - | chr1_2:59082918-59082937 | Msa0080720:CDS | 45.0% |
| ! | ATGGTTTGGGGTATAAGGAG+AGG | - | chr1_2:59082923-59082942 | Msa0080720:CDS | 45.0% |
| ! | TGGTTTGGGGTATAAGGAGA+GGG | - | chr1_2:59082924-59082943 | Msa0080720:CDS | 45.0% |
| ! | CACTTGCTAGCCCTAAGTAA+GGG | + | chr1_2:59082978-59082997 | None:intergenic | 45.0% |
| CTTCCACTATTGTCACCATC+TGG | + | chr1_2:59083081-59083100 | None:intergenic | 45.0% | |
| ! | GATGGTGACAATAGTGGAAG+AGG | - | chr1_2:59083081-59083100 | Msa0080720:intron | 45.0% |
| !! | TCACTTGCTATCTCTCCTGT+TGG | - | chr1_2:59083353-59083372 | Msa0080720:intron | 45.0% |
| !! | GAACTTGTTGATGGCATCCA+TGG | + | chr1_2:59083593-59083612 | None:intergenic | 45.0% |
| GAATCTACAACCAGCTCACA+TGG | - | chr1_2:59083684-59083703 | Msa0080720:intron | 45.0% | |
| AACCAGCTCACATGGATTTC+CGG | - | chr1_2:59083692-59083711 | Msa0080720:intron | 45.0% | |
| AATAGCCTCATTCTGTCTCG+GGG | + | chr1_2:59083764-59083783 | None:intergenic | 45.0% | |
| AGCAAAATGGGACGAACTTG+TGG | - | chr1_2:59083798-59083817 | Msa0080720:intron | 45.0% | |
| GCAAAATGGGACGAACTTGT+GGG | - | chr1_2:59083799-59083818 | Msa0080720:intron | 45.0% | |
| CAAAATGGGACGAACTTGTG+GGG | - | chr1_2:59083800-59083819 | Msa0080720:intron | 45.0% | |
| CACTCTTCATTATCCAAGGC+AGG | + | chr1_2:59083850-59083869 | None:intergenic | 45.0% | |
| CTGCCTTGGATAATGAAGAG+TGG | - | chr1_2:59083848-59083867 | Msa0080720:intron | 45.0% | |
| TCGCCACTCTTCATTATCCA+AGG | + | chr1_2:59083854-59083873 | None:intergenic | 45.0% | |
| AGCCCTTGGTCATATCACAA+CGG | - | chr1_2:59084039-59084058 | Msa0080720:CDS | 45.0% | |
| CACCGTTGTGATATGACCAA+GGG | + | chr1_2:59084044-59084063 | None:intergenic | 45.0% | |
| ! | TATAGCACTTACAAGGGCAC+TGG | - | chr1_2:59084588-59084607 | Msa0080720:intron | 45.0% |
| GGGTACCATGAACTATGCTA+AGG | + | chr1_2:59084747-59084766 | None:intergenic | 45.0% | |
| CACACTGGCATGCATCAAAA+TGG | - | chr1_2:59085189-59085208 | Msa0080720:CDS | 45.0% | |
| CACTGGCATGCATCAAAATG+GGG | - | chr1_2:59085191-59085210 | Msa0080720:CDS | 45.0% | |
| CGGCTAAATCAACTGCTTTC+TGG | + | chr1_2:59085231-59085250 | None:intergenic | 45.0% | |
| !!! | GGCGTCCATGTTATTTTCTG+AGG | - | chr1_2:59085393-59085412 | Msa0080720:CDS | 45.0% |
| GTGTTTGTGGACTTAGCAAG+AGG | - | chr1_2:59085440-59085459 | Msa0080720:CDS | 45.0% | |
| GTTTGTGGACTTAGCAAGAG+GGG | - | chr1_2:59085442-59085461 | Msa0080720:CDS | 45.0% | |
| CATACCCTGAACTTGTGAAC+TGG | + | chr1_2:59085547-59085566 | None:intergenic | 45.0% | |
| GGCTTAACCAATGTATTGGG+AGG | - | chr1_2:59085655-59085674 | Msa0080720:CDS | 45.0% | |
| ! | AAGTAGCGGGGGACGAAAAA+TGG | + | chr1_2:59080832-59080851 | None:intergenic | 50.0% |
| TTAGCATGGTGAAGTAGCGG+GGG | + | chr1_2:59080843-59080862 | None:intergenic | 50.0% | |
| CTCATGCGGAGAAACAAGCT+TGG | - | chr1_2:59081099-59081118 | Msa0080720:CDS | 50.0% | |
| ! | AACTGTGGACTGCTACAGTC+CGG | - | chr1_2:59082008-59082027 | Msa0080720:intron | 50.0% |
| CGAGTTGCACCTGTAGATTC+AGG | - | chr1_2:59082135-59082154 | Msa0080720:intron | 50.0% | |
| !! | GTGGTGGATCATCCTATTGC+GGG | - | chr1_2:59082289-59082308 | Msa0080720:intron | 50.0% |
| TCTTCCCATAAGCCCGCAAT+AGG | + | chr1_2:59082304-59082323 | None:intergenic | 50.0% | |
| CGGGCTTATGGGAAGATAAC+CGG | - | chr1_2:59082308-59082327 | Msa0080720:intron | 50.0% | |
| GATAACCGGTGACTACAGCT+TGG | - | chr1_2:59082322-59082341 | Msa0080720:intron | 50.0% | |
| TTCTGCCAAGCTGTAGTCAC+CGG | + | chr1_2:59082330-59082349 | None:intergenic | 50.0% | |
| GTGACTACAGCTTGGCAGAA+AGG | - | chr1_2:59082330-59082349 | Msa0080720:intron | 50.0% | |
| GACCCTTGGGATCATTCCTA+GGG | + | chr1_2:59082773-59082792 | None:intergenic | 50.0% | |
| AGACCCTTGGGATCATTCCT+AGG | + | chr1_2:59082774-59082793 | None:intergenic | 50.0% | |
| GGAGTAAGTTGCGTGGAAGA+AGG | + | chr1_2:59082816-59082835 | None:intergenic | 50.0% | |
| CGCGTATATCCCCTCATATC+CGG | - | chr1_2:59082861-59082880 | Msa0080720:CDS | 50.0% | |
| CCCCTCATATCCGGATATTC+TGG | - | chr1_2:59082870-59082889 | Msa0080720:CDS | 50.0% | |
| GGCCAGAATATCCGGATATG+AGG | + | chr1_2:59082875-59082894 | None:intergenic | 50.0% | |
| TGGCCGAATATTTAGCCCCA+AGG | - | chr1_2:59082890-59082909 | Msa0080720:CDS | 50.0% | |
| AACCATCAAGGCCGAACCTT+GGG | + | chr1_2:59082909-59082928 | None:intergenic | 50.0% | |
| AAACCATCAAGGCCGAACCT+TGG | + | chr1_2:59082910-59082929 | None:intergenic | 50.0% | |
| ! | AAGGTTCGGCCTTGATGGTT+TGG | - | chr1_2:59082909-59082928 | Msa0080720:CDS | 50.0% |
| ! | AGGTTCGGCCTTGATGGTTT+GGG | - | chr1_2:59082910-59082929 | Msa0080720:CDS | 50.0% |
| ! | GGTTTGGGGTATAAGGAGAG+GGG | - | chr1_2:59082925-59082944 | Msa0080720:CDS | 50.0% |
| ! | GTTTGGGGTATAAGGAGAGG+GGG | - | chr1_2:59082926-59082945 | Msa0080720:CDS | 50.0% |
| ! | TTTGGGGTATAAGGAGAGGG+GGG | - | chr1_2:59082927-59082946 | Msa0080720:CDS | 50.0% |
| ! | ATATGGCGGAGCCCTTACTT+AGG | - | chr1_2:59082964-59082983 | Msa0080720:CDS | 50.0% |
| ! | TATGGCGGAGCCCTTACTTA+GGG | - | chr1_2:59082965-59082984 | Msa0080720:CDS | 50.0% |
| ! | GCACTTGCTAGCCCTAAGTA+AGG | + | chr1_2:59082979-59082998 | None:intergenic | 50.0% |
| !! | AAGTGGGGAGTGCTACACTA+TGG | - | chr1_2:59083046-59083065 | Msa0080720:intron | 50.0% |
| GAGTGCTACACTATGGCAGA+CGG | - | chr1_2:59083053-59083072 | Msa0080720:intron | 50.0% | |
| GTGCCAGATGGTGACAATAG+TGG | - | chr1_2:59083075-59083094 | Msa0080720:intron | 50.0% | |
| !! | AGAGGGTACTCATGAGCAGA+CGG | - | chr1_2:59083099-59083118 | Msa0080720:intron | 50.0% |
| ATGAGCAGACGGAGATACAG+TGG | - | chr1_2:59083110-59083129 | Msa0080720:intron | 50.0% | |
| AACCGGAAATCCATGTGAGC+TGG | + | chr1_2:59083697-59083716 | None:intergenic | 50.0% | |
| TGCTTAACCTTTCCAGCCCT+TGG | - | chr1_2:59084025-59084044 | Msa0080720:CDS | 50.0% | |
| GATATGACCAAGGGCTGGAA+AGG | + | chr1_2:59084035-59084054 | None:intergenic | 50.0% | |
| GTTGTGATATGACCAAGGGC+TGG | + | chr1_2:59084040-59084059 | None:intergenic | 50.0% | |
| CCACCGTTGTGATATGACCA+AGG | + | chr1_2:59084045-59084064 | None:intergenic | 50.0% | |
| CCTTGGTCATATCACAACGG+TGG | - | chr1_2:59084042-59084061 | Msa0080720:CDS | 50.0% | |
| CATATCACAACGGTGGATCG+TGG | - | chr1_2:59084049-59084068 | Msa0080720:CDS | 50.0% | |
| TTTACCTGCCACAGAAGGGT+TGG | + | chr1_2:59084075-59084094 | None:intergenic | 50.0% | |
| GGTACCCTCCACTTACTCAT+AGG | - | chr1_2:59084760-59084779 | Msa0080720:intron | 50.0% | |
| GGTCCATGTTTGATACAGCC+TGG | + | chr1_2:59085326-59085345 | None:intergenic | 50.0% | |
| GGATGTAAGGAACCCAGCTA+TGG | + | chr1_2:59085347-59085366 | None:intergenic | 50.0% | |
| GGAAGGAAAAAATGCTCCCG+TGG | - | chr1_2:59085463-59085482 | Msa0080720:CDS | 50.0% | |
| TGGGAATCCTGTTGGGACTG+TGG | - | chr1_2:59081154-59081173 | Msa0080720:CDS | 55.0% | |
| TTAGCAGCCACAGTCCCAAC+AGG | + | chr1_2:59081164-59081183 | None:intergenic | 55.0% | |
| CTCGGGATACTGGGGATCAA+TGG | - | chr1_2:59081807-59081826 | Msa0080720:intron | 55.0% | |
| ! | ACTGTGGACTGCTACAGTCC+GGG | - | chr1_2:59082009-59082028 | Msa0080720:intron | 55.0% |
| GACAGGCGTATGGGCATTCA+TGG | - | chr1_2:59082455-59082474 | Msa0080720:intron | 55.0% | |
| ACCATCAAGGCCGAACCTTG+GGG | + | chr1_2:59082908-59082927 | None:intergenic | 55.0% | |
| ! | GGTTCGGCCTTGATGGTTTG+GGG | - | chr1_2:59082911-59082930 | Msa0080720:CDS | 55.0% |
| GTGGACTTAGCAAGAGGGGA+AGG | - | chr1_2:59085446-59085465 | Msa0080720:CDS | 55.0% | |
| ! | TTTGAGACTTGGCAGCGCCA+CGG | + | chr1_2:59085483-59085502 | None:intergenic | 55.0% |
| GACTGCTACAGTCCGGGACA+GGG | - | chr1_2:59082015-59082034 | Msa0080720:intron | 60.0% | |
| ! | CTATGGCAGACGGTGCCAGA+TGG | - | chr1_2:59083063-59083082 | Msa0080720:intron | 60.0% |
| GAGCACCCCGAGACAGAATG+AGG | - | chr1_2:59083756-59083775 | Msa0080720:intron | 60.0% | |
| GATCGTGGCCAACCCTTCTG+TGG | - | chr1_2:59084064-59084083 | Msa0080720:CDS | 60.0% | |
| TTGAGACTTGGCAGCGCCAC+GGG | + | chr1_2:59085482-59085501 | None:intergenic | 60.0% | |
| GGACTGCTACAGTCCGGGAC+AGG | - | chr1_2:59082014-59082033 | Msa0080720:intron | 65.0% | |
| TCCGGGACAGGGCTTGATGC+CGG | - | chr1_2:59082026-59082045 | Msa0080720:intron | 65.0% | |
| GCCCCAAGGTTCGGCCTTGA+TGG | - | chr1_2:59082904-59082923 | Msa0080720:CDS | 65.0% | |
| GTGGCCAACCCTTCTGTGGC+AGG | - | chr1_2:59084068-59084087 | Msa0080720:CDS | 65.0% | |
| GCCGGCATCAAGCCCTGTCC+CGG | + | chr1_2:59082030-59082049 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 59080562 | 59085901 | 59080562 | ID=Msa0080720;Name=Msa0080720 |
| chr1_2 | mRNA | 59080562 | 59085901 | 59080562 | ID=Msa0080720-mRNA-1;Parent=Msa0080720;Name=Msa0080720-mRNA-1;_AED=0.09;_eAED=0.09;_QI=191|1|1|1|1|1|6|388|602 |
| chr1_2 | exon | 59080562 | 59081276 | 59080562 | ID=Msa0080720-mRNA-1:exon:19079;Parent=Msa0080720-mRNA-1 |
| chr1_2 | exon | 59082374 | 59082422 | 59082374 | ID=Msa0080720-mRNA-1:exon:19078;Parent=Msa0080720-mRNA-1 |
| chr1_2 | exon | 59082561 | 59083054 | 59082561 | ID=Msa0080720-mRNA-1:exon:19077;Parent=Msa0080720-mRNA-1 |
| chr1_2 | exon | 59083967 | 59084178 | 59083967 | ID=Msa0080720-mRNA-1:exon:19076;Parent=Msa0080720-mRNA-1 |
| chr1_2 | exon | 59084307 | 59084466 | 59084307 | ID=Msa0080720-mRNA-1:exon:19075;Parent=Msa0080720-mRNA-1 |
| chr1_2 | exon | 59085144 | 59085901 | 59085144 | ID=Msa0080720-mRNA-1:exon:19074;Parent=Msa0080720-mRNA-1 |
| chr1_2 | five_prime_UTR | 59085711 | 59085901 | 59085711 | ID=Msa0080720-mRNA-1:five_prime_utr;Parent=Msa0080720-mRNA-1 |
| chr1_2 | CDS | 59085144 | 59085710 | 59085144 | ID=Msa0080720-mRNA-1:cds;Parent=Msa0080720-mRNA-1 |
| chr1_2 | CDS | 59084307 | 59084466 | 59084307 | ID=Msa0080720-mRNA-1:cds;Parent=Msa0080720-mRNA-1 |
| chr1_2 | CDS | 59083967 | 59084178 | 59083967 | ID=Msa0080720-mRNA-1:cds;Parent=Msa0080720-mRNA-1 |
| chr1_2 | CDS | 59082561 | 59083054 | 59082561 | ID=Msa0080720-mRNA-1:cds;Parent=Msa0080720-mRNA-1 |
| chr1_2 | CDS | 59082374 | 59082422 | 59082374 | ID=Msa0080720-mRNA-1:cds;Parent=Msa0080720-mRNA-1 |
| chr1_2 | CDS | 59080950 | 59081276 | 59080950 | ID=Msa0080720-mRNA-1:cds;Parent=Msa0080720-mRNA-1 |
| chr1_2 | three_prime_UTR | 59080562 | 59080949 | 59080562 | ID=Msa0080720-mRNA-1:three_prime_utr;Parent=Msa0080720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
