Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080780 | XP_003591235.1 | 98.230 | 226 | 4 | 0 | 1 | 226 | 1 | 226 | 2.72e-166 | 467 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080780 | sp|O73944|PCP_PYRFU | 32.258 | 186 | 104 | 6 | 13 | 196 | 3 | 168 | 2.12e-20 | 88.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080780 | G7IAA5 | 98.230 | 226 | 4 | 0 | 1 | 226 | 1 | 226 | 1.30e-166 | 467 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0080780 | Msa0116480 | 0.845632 | 3.597761e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080780 | MtrunA17_Chr1g0193061 | 98.230 | 226 | 4 | 0 | 1 | 226 | 1 | 226 | 2.51e-170 | 467 |
| Msa0080780 | MtrunA17_Chr8g0365921 | 65.909 | 220 | 70 | 3 | 1 | 219 | 1 | 216 | 6.38e-105 | 301 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0080780 | AT1G56700.1 | 70.455 | 220 | 62 | 2 | 1 | 220 | 1 | 217 | 2.70e-117 | 333 |
| Msa0080780 | AT1G56700.2 | 70.455 | 220 | 62 | 2 | 1 | 220 | 1 | 217 | 2.70e-117 | 333 |
| Msa0080780 | AT1G56700.4 | 70.455 | 220 | 62 | 2 | 1 | 220 | 1 | 217 | 2.70e-117 | 333 |
| Msa0080780 | AT1G23440.1 | 64.679 | 218 | 73 | 2 | 1 | 218 | 1 | 214 | 6.59e-107 | 307 |
| Msa0080780 | AT1G23440.3 | 64.679 | 218 | 73 | 2 | 1 | 218 | 1 | 214 | 6.59e-107 | 307 |
| Msa0080780 | AT1G56700.3 | 70.370 | 189 | 55 | 1 | 32 | 220 | 1 | 188 | 2.09e-100 | 290 |
| Msa0080780 | AT1G23440.2 | 54.255 | 94 | 39 | 2 | 1 | 94 | 1 | 90 | 2.95e-30 | 108 |
Find 78 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGTTCCAATAAAATTATC+TGG | 0.221027 | 1_2:+59167344 | Msa0080780:CDS |
| ATGTTTGTTCAGCTGCATTT+TGG | 0.221330 | 1_2:+59167731 | Msa0080780:intron |
| ATTGTCTTCATTCCATTTCC+TGG | 0.292689 | 1_2:+59166142 | Msa0080780:five_prime_UTR |
| ATTTGCTGCTTCCTTATTAG+AGG | 0.294466 | 1_2:+59168611 | Msa0080780:CDS |
| ACCTCCCGTATTCTTGAAAT+CGG | 0.310925 | 1_2:-59167964 | None:intergenic |
| CTTCCGTTGCCCTGATGAAA+TGG | 0.315906 | 1_2:+59167811 | Msa0080780:CDS |
| AGGAAGCAGCAAATTGCATT+TGG | 0.316795 | 1_2:-59168602 | None:intergenic |
| ATTAGCAAGTACCTCTAATA+AGG | 0.317751 | 1_2:-59168622 | None:intergenic |
| GTAACAACAGTTTATATAAC+AGG | 0.332893 | 1_2:+59167121 | Msa0080780:CDS |
| GGCTTCCATCCCATTTCATC+AGG | 0.344197 | 1_2:-59167821 | None:intergenic |
| TCCTATTCCTTACCAGGAAA+TGG | 0.369676 | 1_2:-59166154 | None:intergenic |
| AATAAGATATTGTTATGAAA+TGG | 0.383641 | 1_2:+59168753 | Msa0080780:three_prime_UTR |
| TGCCAAAGGGTTTAGCTCTC+GGG | 0.384540 | 1_2:+59167227 | Msa0080780:CDS |
| CCCAGCTCATGTAATTGTTC+TGG | 0.386886 | 1_2:+59168655 | Msa0080780:exon |
| AATTTATAACATTTCATTCA+AGG | 0.392637 | 1_2:-59168713 | None:intergenic |
| TTATTCACAATTGTCTCTGT+TGG | 0.396027 | 1_2:-59167175 | None:intergenic |
| TTCAGATTCCTTGGCAATAA+CGG | 0.399064 | 1_2:-59167317 | None:intergenic |
| CTATCATTCTCTTCGGTTCG+CGG | 0.401359 | 1_2:+59168515 | Msa0080780:CDS |
| ACCTTTCGTTGCCAAGGTCT+TGG | 0.402676 | 1_2:-59168439 | None:intergenic |
| TTGCCAAAGGGTTTAGCTCT+CGG | 0.404310 | 1_2:+59167226 | Msa0080780:CDS |
| GGAAGCAGCAAATTGCATTT+GGG | 0.414368 | 1_2:-59168601 | None:intergenic |
| ATGTTTACTATCATTCTCTT+CGG | 0.426824 | 1_2:+59168508 | Msa0080780:CDS |
| TGTTGACATGCTTCTGAGAA+TGG | 0.428360 | 1_2:+59168678 | Msa0080780:three_prime_UTR |
| ACCAGAACAATTACATGAGC+TGG | 0.432033 | 1_2:-59168656 | None:intergenic |
| CGGACCCCATCTGCGGATGA+TGG | 0.434904 | 1_2:-59167081 | None:intergenic |
| ACTTGAAGATTCAGATTCCT+TGG | 0.436551 | 1_2:-59167326 | None:intergenic |
| GACAATTGTGAATAATTTGA+CGG | 0.438476 | 1_2:+59167183 | Msa0080780:CDS |
| GTCTTGGTCATCTGCTCCAC+AGG | 0.464244 | 1_2:-59168423 | None:intergenic |
| ATGGCCCGATTTCAAGAATA+CGG | 0.466039 | 1_2:+59167959 | Msa0080780:CDS |
| GTTCCCATTGTTCCTTCAGA+TGG | 0.480004 | 1_2:+59167940 | Msa0080780:CDS |
| GAATTTATCTGATCAAAGAA+TGG | 0.481561 | 1_2:-59169008 | None:intergenic |
| CTCCCGAGAGCTAAACCCTT+TGG | 0.486868 | 1_2:-59167229 | None:intergenic |
| TACAGCAGCTGAAGGACCTT+CGG | 0.491990 | 1_2:-59167101 | None:intergenic |
| CCTCCCGTATTCTTGAAATC+GGG | 0.492780 | 1_2:-59167963 | None:intergenic |
| TGTAGTATTCTTGATACTGC+TGG | 0.503788 | 1_2:+59167253 | Msa0080780:CDS |
| TAACGGCAGATTGCAATGTC+TGG | 0.506661 | 1_2:-59167300 | None:intergenic |
| ACTCAAAGCAAATTAACTAC+TGG | 0.506768 | 1_2:-59166084 | None:intergenic |
| ATCATAACCTTTCGTTGCCA+AGG | 0.509665 | 1_2:-59168445 | None:intergenic |
| TTCCGTTGCCCTGATGAAAT+GGG | 0.529742 | 1_2:+59167812 | Msa0080780:CDS |
| AAGTTCCAATAAAATTATCT+GGG | 0.531862 | 1_2:+59167345 | Msa0080780:CDS |
| CGGGCCATCTGAAGGAACAA+TGG | 0.539127 | 1_2:-59167944 | None:intergenic |
| GGGCCATCTGAAGGAACAAT+GGG | 0.541004 | 1_2:-59167943 | None:intergenic |
| TGGTCATCTGCTCCACAGGA+AGG | 0.549415 | 1_2:-59168419 | None:intergenic |
| TCATTTATTGTGAAGAAGAG+TGG | 0.550686 | 1_2:-59168573 | None:intergenic |
| ATTAGACCATCATCCGCAGA+TGG | 0.550739 | 1_2:+59167075 | Msa0080780:exon |
| TTGGATTCTCTGAAACTCCA+TGG | 0.551239 | 1_2:-59167156 | None:intergenic |
| CTTGAAATCGGGCCATCTGA+AGG | 0.551552 | 1_2:-59167952 | None:intergenic |
| GTTGACATGCTTCTGAGAAT+GGG | 0.552288 | 1_2:+59168679 | Msa0080780:three_prime_UTR |
| ATGTCTGGTACAGCGGAACA+AGG | 0.561027 | 1_2:-59167285 | None:intergenic |
| ATCCCATTTCATCAGGGCAA+CGG | 0.562088 | 1_2:-59167814 | None:intergenic |
| GCAATCTGCCGTTATTGCCA+AGG | 0.564914 | 1_2:+59167309 | Msa0080780:CDS |
| CTTTGATCAGATAAATTCGA+GGG | 0.568130 | 1_2:+59169013 | Msa0080780:three_prime_UTR |
| GATTGCAATGTCTGGTACAG+CGG | 0.575127 | 1_2:-59167292 | None:intergenic |
| CATCCGCAGATGGGGTCCGA+AGG | 0.582064 | 1_2:+59167085 | Msa0080780:exon |
| ACCAAGACCTTGGCAACGAA+AGG | 0.585242 | 1_2:+59168438 | Msa0080780:CDS |
| ATTCTTGATACTGCTGGACA+AGG | 0.586542 | 1_2:+59167259 | Msa0080780:CDS |
| TTAGACCATCATCCGCAGAT+GGG | 0.590599 | 1_2:+59167076 | Msa0080780:exon |
| GGAGCAGATGACCAAGACCT+TGG | 0.592442 | 1_2:+59168428 | Msa0080780:CDS |
| CTTCGGTTCGCGGAGCAGAA+CGG | 0.596040 | 1_2:+59168525 | Msa0080780:CDS |
| CCAGAACAATTACATGAGCT+GGG | 0.598749 | 1_2:-59168655 | None:intergenic |
| TGGCCCGATTTCAAGAATAC+GGG | 0.601050 | 1_2:+59167960 | Msa0080780:CDS |
| TCTTTGATCAGATAAATTCG+AGG | 0.603413 | 1_2:+59169012 | Msa0080780:three_prime_UTR |
| TGTAGCTGATAAGTATGTCT+CGG | 0.609222 | 1_2:+59168920 | Msa0080780:three_prime_UTR |
| GGGTTAACAGTGGTGCAACA+AGG | 0.614278 | 1_2:+59167753 | Msa0080780:CDS |
| GGTCATCTGCTCCACAGGAA+GGG | 0.614706 | 1_2:-59168418 | None:intergenic |
| GGACCTTCGGACCCCATCTG+CGG | 0.617904 | 1_2:-59167088 | None:intergenic |
| TAGACCATCATCCGCAGATG+GGG | 0.622906 | 1_2:+59167077 | Msa0080780:exon |
| TGAAATGGGATGGAAGCCAC+AGG | 0.624135 | 1_2:+59167826 | Msa0080780:CDS |
| ACTGTTGTTACAGCAGCTGA+AGG | 0.629270 | 1_2:-59167109 | None:intergenic |
| CATTTCATCAGGGCAACGGA+AGG | 0.630663 | 1_2:-59167810 | None:intergenic |
| TATGCAGACTACCCTTCCTG+TGG | 0.633375 | 1_2:+59168407 | Msa0080780:intron |
| GCTTCCATCCCATTTCATCA+GGG | 0.640372 | 1_2:-59167820 | None:intergenic |
| GTTGCCCTGATGAAATGGGA+TGG | 0.648441 | 1_2:+59167816 | Msa0080780:CDS |
| TGTCTGGTACAGCGGAACAA+GGG | 0.649049 | 1_2:-59167284 | None:intergenic |
| CCCGATTTCAAGAATACGGG+AGG | 0.650919 | 1_2:+59167963 | Msa0080780:CDS |
| TGACATCTGATGATGCAGGA+AGG | 0.659977 | 1_2:+59168472 | Msa0080780:CDS |
| GTAATGACATCTGATGATGC+AGG | 0.664436 | 1_2:+59168468 | Msa0080780:CDS |
| AGAACGTCAAGCTGTCAATG+AGG | 0.679006 | 1_2:+59167784 | Msa0080780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGATATGATAATATAATTA+TGG | + | chr1_2:59167553-59167572 | Msa0080780:intron | 10.0% |
| !! | TATATTATCATATCTAAACA+AGG | - | chr1_2:59167549-59167568 | None:intergenic | 15.0% |
| !! | AATTTATAACATTTCATTCA+AGG | - | chr1_2:59168716-59168735 | None:intergenic | 15.0% |
| !! | AATAAGATATTGTTATGAAA+TGG | + | chr1_2:59168753-59168772 | Msa0080780:three_prime_UTR | 15.0% |
| !! | TTATGAAATGGAAATAAAAA+TGG | + | chr1_2:59168765-59168784 | Msa0080780:three_prime_UTR | 15.0% |
| !!! | CTTTTGTTTCTAAATCTAAT+CGG | + | chr1_2:59166053-59166072 | Msa0080780:five_prime_UTR | 20.0% |
| !!! | ATTTTTTTTTTCTTCTTCTG+AGG | - | chr1_2:59166240-59166259 | None:intergenic | 20.0% |
| !!! | ACATAATCTTGCAAATTTTA+AGG | - | chr1_2:59166446-59166465 | None:intergenic | 20.0% |
| !! | TTCAACATGAAAACATAATT+GGG | - | chr1_2:59166477-59166496 | None:intergenic | 20.0% |
| !! | ATTCAACATGAAAACATAAT+TGG | - | chr1_2:59166478-59166497 | None:intergenic | 20.0% |
| !!! | ATTGTTAAGATTTTAAGTTG+TGG | + | chr1_2:59166645-59166664 | Msa0080780:intron | 20.0% |
| !!! | GTATTTTTAAGTGATGATTT+TGG | + | chr1_2:59166911-59166930 | Msa0080780:intron | 20.0% |
| !! | AAGTTCCAATAAAATTATCT+GGG | + | chr1_2:59167345-59167364 | Msa0080780:CDS | 20.0% |
| !! | TACATAAATAAAACTTCAGA+AGG | - | chr1_2:59167444-59167463 | None:intergenic | 20.0% |
| !!! | TTTCTGCAATAAAAGTTTTA+TGG | - | chr1_2:59167920-59167939 | None:intergenic | 20.0% |
| !!! | AGTAATTTACAGTGTTTTTT+CGG | + | chr1_2:59168960-59168979 | Msa0080780:three_prime_UTR | 20.0% |
| !! | TTATGTTCTTTTGTATTTCG+AGG | + | chr1_2:59166275-59166294 | Msa0080780:intron | 25.0% |
| ! | CTAAATTTCAAGACTTTACA+AGG | - | chr1_2:59166606-59166625 | None:intergenic | 25.0% |
| !!! | TAAGATTTTAAGTTGTGGTT+TGG | + | chr1_2:59166650-59166669 | Msa0080780:intron | 25.0% |
| ! | TACACTATGATGCTTAATAT+TGG | + | chr1_2:59166679-59166698 | Msa0080780:intron | 25.0% |
| !! | TGTTTCTGTATATGATGATA+TGG | + | chr1_2:59166946-59166965 | Msa0080780:intron | 25.0% |
| !!! | TTTTACTTGTCATTTAATGC+AGG | + | chr1_2:59167013-59167032 | Msa0080780:intron | 25.0% |
| ! | GTAACAACAGTTTATATAAC+AGG | + | chr1_2:59167121-59167140 | Msa0080780:CDS | 25.0% |
| ! | GACAATTGTGAATAATTTGA+CGG | + | chr1_2:59167183-59167202 | Msa0080780:CDS | 25.0% |
| ! | CAAGTTCCAATAAAATTATC+TGG | + | chr1_2:59167344-59167363 | Msa0080780:CDS | 25.0% |
| ! | ATCATATCTAAACAAGGATA+CGG | - | chr1_2:59167543-59167562 | None:intergenic | 25.0% |
| ! | TTAGCATAGAACTGAAATAA+TGG | + | chr1_2:59167631-59167650 | Msa0080780:intron | 25.0% |
| ! | TTATCATGAATCTTATGTTC+TGG | + | chr1_2:59167706-59167725 | Msa0080780:intron | 25.0% |
| ! | GTACAAATATGAAAATGTTG+AGG | + | chr1_2:59168048-59168067 | Msa0080780:intron | 25.0% |
| !! | CTGTTCTTTAAATATTTCTG+AGG | - | chr1_2:59168103-59168122 | None:intergenic | 25.0% |
| ! | ATGTTTACTATCATTCTCTT+CGG | + | chr1_2:59168508-59168527 | Msa0080780:CDS | 25.0% |
| ! | GAATTTATCTGATCAAAGAA+TGG | - | chr1_2:59169011-59169030 | None:intergenic | 25.0% |
| ACTCAAAGCAAATTAACTAC+TGG | - | chr1_2:59166087-59166106 | None:intergenic | 30.0% | |
| AATAAATCCTATTCCTTACC+AGG | - | chr1_2:59166163-59166182 | None:intergenic | 30.0% | |
| AACATGAAAACATAATTGGG+TGG | - | chr1_2:59166474-59166493 | None:intergenic | 30.0% | |
| TCATGTTGAATACTGTCATT+AGG | + | chr1_2:59166487-59166506 | Msa0080780:intron | 30.0% | |
| !!! | TTTTGAGTTCTTGAGTGAAA+TGG | + | chr1_2:59166541-59166560 | Msa0080780:intron | 30.0% |
| !!! | ACAGGTTTTAAGAAATTCCA+TGG | + | chr1_2:59167139-59167158 | Msa0080780:CDS | 30.0% |
| TTATTCACAATTGTCTCTGT+TGG | - | chr1_2:59167178-59167197 | None:intergenic | 30.0% | |
| ACGGAATATGTGAAAAAGAA+GGG | + | chr1_2:59167202-59167221 | Msa0080780:CDS | 30.0% | |
| ! | ACTCACCCAGATAATTTTAT+TGG | - | chr1_2:59167353-59167372 | None:intergenic | 30.0% |
| ! | AATGGTAAGAAAGTTCTAGT+TGG | + | chr1_2:59167649-59167668 | Msa0080780:intron | 30.0% |
| ATGAAAACAAGTTTAACCTG+TGG | - | chr1_2:59167845-59167864 | None:intergenic | 30.0% | |
| ! | TTGTTTTCATCAACCCTTTT+AGG | + | chr1_2:59167855-59167874 | Msa0080780:intron | 30.0% |
| ! | TAATAGAGTACTTCAAGATC+AGG | - | chr1_2:59167881-59167900 | None:intergenic | 30.0% |
| ! | TTTTATGGAACTGTCACTAA+AGG | - | chr1_2:59167905-59167924 | None:intergenic | 30.0% |
| TTGCGAAATGATACTTAGAA+TGG | - | chr1_2:59168130-59168149 | None:intergenic | 30.0% | |
| AAAACATGGAACAGTCATTA+AGG | - | chr1_2:59168340-59168359 | None:intergenic | 30.0% | |
| TTAGGACAAAAGACAAAGTT+AGG | - | chr1_2:59168384-59168403 | None:intergenic | 30.0% | |
| TCATTTATTGTGAAGAAGAG+TGG | - | chr1_2:59168576-59168595 | None:intergenic | 30.0% | |
| ATTAGCAAGTACCTCTAATA+AGG | - | chr1_2:59168625-59168644 | None:intergenic | 30.0% | |
| TCTTTGATCAGATAAATTCG+AGG | + | chr1_2:59169012-59169031 | Msa0080780:three_prime_UTR | 30.0% | |
| CTTTGATCAGATAAATTCGA+GGG | + | chr1_2:59169013-59169032 | Msa0080780:three_prime_UTR | 30.0% | |
| ATTGTCTTCATTCCATTTCC+TGG | + | chr1_2:59166142-59166161 | Msa0080780:five_prime_UTR | 35.0% | |
| TTCCTTGTTCCTTCATCATT+TGG | + | chr1_2:59166307-59166326 | Msa0080780:intron | 35.0% | |
| AACCAAATGATGAAGGAACA+AGG | - | chr1_2:59166312-59166331 | None:intergenic | 35.0% | |
| ATGAAAACATAATTGGGTGG+TGG | - | chr1_2:59166471-59166490 | None:intergenic | 35.0% | |
| AATACTGTCATTAGGATGTC+TGG | + | chr1_2:59166495-59166514 | Msa0080780:intron | 35.0% | |
| ATACTGTCATTAGGATGTCT+GGG | + | chr1_2:59166496-59166515 | Msa0080780:intron | 35.0% | |
| ! | GATGTCTGGGATTACAAAAT+TGG | + | chr1_2:59166509-59166528 | Msa0080780:intron | 35.0% |
| CTTAATATTGGTGAGAATCG+CGG | + | chr1_2:59166691-59166710 | Msa0080780:intron | 35.0% | |
| CAACAATTGTGATCATGTTG+TGG | + | chr1_2:59166740-59166759 | Msa0080780:intron | 35.0% | |
| AATTGGATCACAATTGTTGC+AGG | + | chr1_2:59166772-59166791 | Msa0080780:intron | 35.0% | |
| ATTGGATCACAATTGTTGCA+GGG | + | chr1_2:59166773-59166792 | Msa0080780:intron | 35.0% | |
| ! | CAAAGTTTGATAGCATGATG+TGG | + | chr1_2:59166880-59166899 | Msa0080780:intron | 35.0% |
| TATATGATGATATGGTCCAC+TGG | + | chr1_2:59166954-59166973 | Msa0080780:intron | 35.0% | |
| GACGGAATATGTGAAAAAGA+AGG | + | chr1_2:59167201-59167220 | Msa0080780:CDS | 35.0% | |
| AAAAAGAAGGGTTTGCCAAA+GGG | + | chr1_2:59167214-59167233 | Msa0080780:CDS | 35.0% | |
| TGTAGTATTCTTGATACTGC+TGG | + | chr1_2:59167253-59167272 | Msa0080780:CDS | 35.0% | |
| TTCAGATTCCTTGGCAATAA+CGG | - | chr1_2:59167320-59167339 | None:intergenic | 35.0% | |
| ACTTGAAGATTCAGATTCCT+TGG | - | chr1_2:59167329-59167348 | None:intergenic | 35.0% | |
| CTACACACAAAGTATGACTA+AGG | - | chr1_2:59167407-59167426 | None:intergenic | 35.0% | |
| CTTAGTCATACTTTGTGTGT+AGG | + | chr1_2:59167405-59167424 | Msa0080780:intron | 35.0% | |
| AAGATCACTGGAATTTGACA+TGG | + | chr1_2:59167591-59167610 | Msa0080780:intron | 35.0% | |
| ! | ATGTTTGTTCAGCTGCATTT+TGG | + | chr1_2:59167731-59167750 | Msa0080780:intron | 35.0% |
| ! | TGTTTGTTCAGCTGCATTTT+GGG | + | chr1_2:59167732-59167751 | Msa0080780:intron | 35.0% |
| ! | TTTTCGATTATCTGAGTCCT+TGG | + | chr1_2:59168152-59168171 | Msa0080780:intron | 35.0% |
| ! | CACAAAGTTTCTAGATACCA+AGG | - | chr1_2:59168172-59168191 | None:intergenic | 35.0% |
| ! | CATTTTCAAAAACTTGCGAG+AGG | + | chr1_2:59168195-59168214 | Msa0080780:intron | 35.0% |
| !!! | TGTTCCATGTTTTTGAGATG+CGG | + | chr1_2:59168347-59168366 | Msa0080780:intron | 35.0% |
| ! | ATTTGCTGCTTCCTTATTAG+AGG | + | chr1_2:59168611-59168630 | Msa0080780:CDS | 35.0% |
| ! | TTTTAGCCCTTAAAATGCTG+AGG | + | chr1_2:59168799-59168818 | Msa0080780:three_prime_UTR | 35.0% |
| ! | AACTTGCCTCAGCATTTTAA+GGG | - | chr1_2:59168808-59168827 | None:intergenic | 35.0% |
| TGTAGCTGATAAGTATGTCT+CGG | + | chr1_2:59168920-59168939 | Msa0080780:three_prime_UTR | 35.0% | |
| !! | TTTTCGGTTTGATGCTCAAT+AGG | + | chr1_2:59168976-59168995 | Msa0080780:three_prime_UTR | 35.0% |
| CTTCATTCCATTTCCTGGTA+AGG | + | chr1_2:59166147-59166166 | Msa0080780:intron | 40.0% | |
| TCCATTTCCTGGTAAGGAAT+AGG | + | chr1_2:59166153-59166172 | Msa0080780:intron | 40.0% | |
| TCCTATTCCTTACCAGGAAA+TGG | - | chr1_2:59166157-59166176 | None:intergenic | 40.0% | |
| ATCACGCAACCAAATGATGA+AGG | - | chr1_2:59166319-59166338 | None:intergenic | 40.0% | |
| TGTTGTGGTGATATCGCAAT+TGG | + | chr1_2:59166755-59166774 | Msa0080780:intron | 40.0% | |
| ATATGGTCCACTGGATAAGA+AGG | + | chr1_2:59166963-59166982 | Msa0080780:intron | 40.0% | |
| AACCAAACCTTCTTATCCAG+TGG | - | chr1_2:59166973-59166992 | None:intergenic | 40.0% | |
| !! | TTGGATTCTCTGAAACTCCA+TGG | - | chr1_2:59167159-59167178 | None:intergenic | 40.0% |
| GAAAAAGAAGGGTTTGCCAA+AGG | + | chr1_2:59167213-59167232 | Msa0080780:CDS | 40.0% | |
| ATTCTTGATACTGCTGGACA+AGG | + | chr1_2:59167259-59167278 | Msa0080780:CDS | 40.0% | |
| TAACTGCGACTAAAGATCAC+TGG | + | chr1_2:59167579-59167598 | Msa0080780:intron | 40.0% | |
| ! | GTTTGTTCAGCTGCATTTTG+GGG | + | chr1_2:59167733-59167752 | Msa0080780:intron | 40.0% |
| CTTCAAGATCAGGCCTAAAA+GGG | - | chr1_2:59167871-59167890 | None:intergenic | 40.0% | |
| ACTTCAAGATCAGGCCTAAA+AGG | - | chr1_2:59167872-59167891 | None:intergenic | 40.0% | |
| ATGGCCCGATTTCAAGAATA+CGG | + | chr1_2:59167959-59167978 | Msa0080780:CDS | 40.0% | |
| ACCTCCCGTATTCTTGAAAT+CGG | - | chr1_2:59167967-59167986 | None:intergenic | 40.0% | |
| CAAGAATACGGGAGGTAAAT+TGG | + | chr1_2:59167971-59167990 | Msa0080780:intron | 40.0% | |
| AACAAGTCTTTGCCTCTTGA+TGG | + | chr1_2:59168238-59168257 | Msa0080780:intron | 40.0% | |
| AGGTGCAAGTGCAAAGATAT+TGG | + | chr1_2:59168270-59168289 | Msa0080780:intron | 40.0% | |
| ACAACCGCATCTCAAAAACA+TGG | - | chr1_2:59168354-59168373 | None:intergenic | 40.0% | |
| AGGGTAGTCTGCATAAAGTT+AGG | - | chr1_2:59168402-59168421 | None:intergenic | 40.0% | |
| ATCATAACCTTTCGTTGCCA+AGG | - | chr1_2:59168448-59168467 | None:intergenic | 40.0% | |
| ! | GTAATGACATCTGATGATGC+AGG | + | chr1_2:59168468-59168487 | Msa0080780:CDS | 40.0% |
| GGAAGCAGCAAATTGCATTT+GGG | - | chr1_2:59168604-59168623 | None:intergenic | 40.0% | |
| AGGAAGCAGCAAATTGCATT+TGG | - | chr1_2:59168605-59168624 | None:intergenic | 40.0% | |
| CCAGAACAATTACATGAGCT+GGG | - | chr1_2:59168658-59168677 | None:intergenic | 40.0% | |
| ACCAGAACAATTACATGAGC+TGG | - | chr1_2:59168659-59168678 | None:intergenic | 40.0% | |
| ! | TGTTGACATGCTTCTGAGAA+TGG | + | chr1_2:59168678-59168697 | Msa0080780:three_prime_UTR | 40.0% |
| ! | GTTGACATGCTTCTGAGAAT+GGG | + | chr1_2:59168679-59168698 | Msa0080780:three_prime_UTR | 40.0% |
| ! | CAACTTGCCTCAGCATTTTA+AGG | - | chr1_2:59168809-59168828 | None:intergenic | 40.0% |
| !! | GTTTTGATGCGATGAGATCG+TGG | + | chr1_2:59166805-59166824 | Msa0080780:intron | 45.0% |
| TGAGATCGTGGTCCAAATTG+TGG | + | chr1_2:59166817-59166836 | Msa0080780:intron | 45.0% | |
| GTCCACTGGATAAGAAGGTT+TGG | + | chr1_2:59166968-59166987 | Msa0080780:intron | 45.0% | |
| ATTAGACCATCATCCGCAGA+TGG | + | chr1_2:59167075-59167094 | Msa0080780:exon | 45.0% | |
| TTAGACCATCATCCGCAGAT+GGG | + | chr1_2:59167076-59167095 | Msa0080780:exon | 45.0% | |
| ACTGTTGTTACAGCAGCTGA+AGG | - | chr1_2:59167112-59167131 | None:intergenic | 45.0% | |
| !! | TTGCCAAAGGGTTTAGCTCT+CGG | + | chr1_2:59167226-59167245 | Msa0080780:CDS | 45.0% |
| GATTGCAATGTCTGGTACAG+CGG | - | chr1_2:59167295-59167314 | None:intergenic | 45.0% | |
| TAACGGCAGATTGCAATGTC+TGG | - | chr1_2:59167303-59167322 | None:intergenic | 45.0% | |
| ATTATCTGGGTGAGTTGCCA+AGG | + | chr1_2:59167358-59167377 | Msa0080780:intron | 45.0% | |
| ACTCACAAAGTAGGGATCCT+TGG | - | chr1_2:59167378-59167397 | None:intergenic | 45.0% | |
| AGGATCCCTACTTTGTGAGT+AGG | + | chr1_2:59167378-59167397 | Msa0080780:intron | 45.0% | |
| GGATCCCTACTTTGTGAGTA+GGG | + | chr1_2:59167379-59167398 | Msa0080780:intron | 45.0% | |
| !!! | CTGCATTTTGGGGTTAACAG+TGG | + | chr1_2:59167743-59167762 | Msa0080780:CDS | 45.0% |
| AGAACGTCAAGCTGTCAATG+AGG | + | chr1_2:59167784-59167803 | Msa0080780:CDS | 45.0% | |
| TTCCGTTGCCCTGATGAAAT+GGG | + | chr1_2:59167812-59167831 | Msa0080780:CDS | 45.0% | |
| ATCCCATTTCATCAGGGCAA+CGG | - | chr1_2:59167817-59167836 | None:intergenic | 45.0% | |
| GCTTCCATCCCATTTCATCA+GGG | - | chr1_2:59167823-59167842 | None:intergenic | 45.0% | |
| GTTCCCATTGTTCCTTCAGA+TGG | + | chr1_2:59167940-59167959 | Msa0080780:CDS | 45.0% | |
| TGGCCCGATTTCAAGAATAC+GGG | + | chr1_2:59167960-59167979 | Msa0080780:CDS | 45.0% | |
| CCTCCCGTATTCTTGAAATC+GGG | - | chr1_2:59167966-59167985 | None:intergenic | 45.0% | |
| GTTCTCTCGAGTTCAGTGTT+TGG | + | chr1_2:59168026-59168045 | Msa0080780:intron | 45.0% | |
| AAGTCTTTGCCTCTTGATGG+AGG | + | chr1_2:59168241-59168260 | Msa0080780:intron | 45.0% | |
| CCTTATATGCCTCCATCAAG+AGG | - | chr1_2:59168253-59168272 | None:intergenic | 45.0% | |
| ! | CCTCTTGATGGAGGCATATA+AGG | + | chr1_2:59168250-59168269 | Msa0080780:intron | 45.0% |
| ! | TGACATCTGATGATGCAGGA+AGG | + | chr1_2:59168472-59168491 | Msa0080780:CDS | 45.0% |
| ! | CTATCATTCTCTTCGGTTCG+CGG | + | chr1_2:59168515-59168534 | Msa0080780:CDS | 45.0% |
| CCCAGCTCATGTAATTGTTC+TGG | + | chr1_2:59168655-59168674 | Msa0080780:exon | 45.0% | |
| !!! | TTTTATAATATCATTTATTT+TGG | + | chr1_2:59168075-59168094 | Msa0080780:intron | 5.0% |
| CGGTCAACTGACGCTGATAT+GGG | + | chr1_2:59166711-59166730 | Msa0080780:intron | 50.0% | |
| TAGACCATCATCCGCAGATG+GGG | + | chr1_2:59167077-59167096 | Msa0080780:exon | 50.0% | |
| TACAGCAGCTGAAGGACCTT+CGG | - | chr1_2:59167104-59167123 | None:intergenic | 50.0% | |
| !! | TGCCAAAGGGTTTAGCTCTC+GGG | + | chr1_2:59167227-59167246 | Msa0080780:CDS | 50.0% |
| TGTCTGGTACAGCGGAACAA+GGG | - | chr1_2:59167287-59167306 | None:intergenic | 50.0% | |
| ATGTCTGGTACAGCGGAACA+AGG | - | chr1_2:59167288-59167307 | None:intergenic | 50.0% | |
| GCAATCTGCCGTTATTGCCA+AGG | + | chr1_2:59167309-59167328 | Msa0080780:CDS | 50.0% | |
| GGCTCCCTACTCACAAAGTA+GGG | - | chr1_2:59167386-59167405 | None:intergenic | 50.0% | |
| AGGCTCCCTACTCACAAAGT+AGG | - | chr1_2:59167387-59167406 | None:intergenic | 50.0% | |
| GGGTTAACAGTGGTGCAACA+AGG | + | chr1_2:59167753-59167772 | Msa0080780:CDS | 50.0% | |
| CATTTCATCAGGGCAACGGA+AGG | - | chr1_2:59167813-59167832 | None:intergenic | 50.0% | |
| CTTCCGTTGCCCTGATGAAA+TGG | + | chr1_2:59167811-59167830 | Msa0080780:CDS | 50.0% | |
| GTTGCCCTGATGAAATGGGA+TGG | + | chr1_2:59167816-59167835 | Msa0080780:CDS | 50.0% | |
| GGCTTCCATCCCATTTCATC+AGG | - | chr1_2:59167824-59167843 | None:intergenic | 50.0% | |
| TGAAATGGGATGGAAGCCAC+AGG | + | chr1_2:59167826-59167845 | Msa0080780:CDS | 50.0% | |
| GGGCCATCTGAAGGAACAAT+GGG | - | chr1_2:59167946-59167965 | None:intergenic | 50.0% | |
| CTTGAAATCGGGCCATCTGA+AGG | - | chr1_2:59167955-59167974 | None:intergenic | 50.0% | |
| CCCGATTTCAAGAATACGGG+AGG | + | chr1_2:59167963-59167982 | Msa0080780:CDS | 50.0% | |
| CGGGAGGTAAATTGGATCAC+TGG | + | chr1_2:59167979-59167998 | Msa0080780:intron | 50.0% | |
| TATGCAGACTACCCTTCCTG+TGG | + | chr1_2:59168407-59168426 | Msa0080780:intron | 50.0% | |
| ACCAAGACCTTGGCAACGAA+AGG | + | chr1_2:59168438-59168457 | Msa0080780:CDS | 50.0% | |
| ACCTTTCGTTGCCAAGGTCT+TGG | - | chr1_2:59168442-59168461 | None:intergenic | 50.0% | |
| GCGGTCAACTGACGCTGATA+TGG | + | chr1_2:59166710-59166729 | Msa0080780:intron | 55.0% | |
| GCACGTCTGCGACCACAATT+TGG | - | chr1_2:59166832-59166851 | None:intergenic | 55.0% | |
| CTCCCGAGAGCTAAACCCTT+TGG | - | chr1_2:59167232-59167251 | None:intergenic | 55.0% | |
| CGGGCCATCTGAAGGAACAA+TGG | - | chr1_2:59167947-59167966 | None:intergenic | 55.0% | |
| GGTCATCTGCTCCACAGGAA+GGG | - | chr1_2:59168421-59168440 | None:intergenic | 55.0% | |
| TGGTCATCTGCTCCACAGGA+AGG | - | chr1_2:59168422-59168441 | None:intergenic | 55.0% | |
| GTCTTGGTCATCTGCTCCAC+AGG | - | chr1_2:59168426-59168445 | None:intergenic | 55.0% | |
| GGAGCAGATGACCAAGACCT+TGG | + | chr1_2:59168428-59168447 | Msa0080780:CDS | 55.0% | |
| ! | CTTCGGTTCGCGGAGCAGAA+CGG | + | chr1_2:59168525-59168544 | Msa0080780:CDS | 60.0% |
| CGGACCCCATCTGCGGATGA+TGG | - | chr1_2:59167084-59167103 | None:intergenic | 65.0% | |
| CATCCGCAGATGGGGTCCGA+AGG | + | chr1_2:59167085-59167104 | Msa0080780:exon | 65.0% | |
| GGACCTTCGGACCCCATCTG+CGG | - | chr1_2:59167091-59167110 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 59166037 | 59169046 | 59166037 | ID=Msa0080780;Name=Msa0080780 |
| chr1_2 | mRNA | 59166037 | 59169046 | 59166037 | ID=Msa0080780-mRNA-1;Parent=Msa0080780;Name=Msa0080780-mRNA-1;_AED=0.10;_eAED=0.10;_QI=186|1|1|1|0.75|0.6|5|378|226 |
| chr1_2 | exon | 59166037 | 59166163 | 59166037 | ID=Msa0080780-mRNA-1:exon:19104;Parent=Msa0080780-mRNA-1 |
| chr1_2 | exon | 59167035 | 59167366 | 59167035 | ID=Msa0080780-mRNA-1:exon:19105;Parent=Msa0080780-mRNA-1 |
| chr1_2 | exon | 59167743 | 59167847 | 59167743 | ID=Msa0080780-mRNA-1:exon:19106;Parent=Msa0080780-mRNA-1 |
| chr1_2 | exon | 59167937 | 59167984 | 59167937 | ID=Msa0080780-mRNA-1:exon:19107;Parent=Msa0080780-mRNA-1 |
| chr1_2 | exon | 59168414 | 59169046 | 59168414 | ID=Msa0080780-mRNA-1:exon:19108;Parent=Msa0080780-mRNA-1 |
| chr1_2 | five_prime_UTR | 59166037 | 59166163 | 59166037 | ID=Msa0080780-mRNA-1:five_prime_utr;Parent=Msa0080780-mRNA-1 |
| chr1_2 | five_prime_UTR | 59167035 | 59167093 | 59167035 | ID=Msa0080780-mRNA-1:five_prime_utr;Parent=Msa0080780-mRNA-1 |
| chr1_2 | CDS | 59167094 | 59167366 | 59167094 | ID=Msa0080780-mRNA-1:cds;Parent=Msa0080780-mRNA-1 |
| chr1_2 | CDS | 59167743 | 59167847 | 59167743 | ID=Msa0080780-mRNA-1:cds;Parent=Msa0080780-mRNA-1 |
| chr1_2 | CDS | 59167937 | 59167984 | 59167937 | ID=Msa0080780-mRNA-1:cds;Parent=Msa0080780-mRNA-1 |
| chr1_2 | CDS | 59168414 | 59168668 | 59168414 | ID=Msa0080780-mRNA-1:cds;Parent=Msa0080780-mRNA-1 |
| chr1_2 | three_prime_UTR | 59168669 | 59169046 | 59168669 | ID=Msa0080780-mRNA-1:three_prime_utr;Parent=Msa0080780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
