Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081730 | sp|Q8VZL6|SWC4_ARATH | 55.765 | 425 | 137 | 9 | 2 | 387 | 5 | 417 | 1.64e-150 | 436 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081730 | G7ICU6 | 89.120 | 432 | 14 | 2 | 1 | 399 | 1 | 432 | 0.0 | 771 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0081730 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0081730 | Msa0174050 | 0.812199 | 4.781741e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081730 | MtrunA17_Chr1g0194351 | 91.422 | 408 | 14 | 1 | 1 | 387 | 1 | 408 | 0.0 | 753 |
| Msa0081730 | MtrunA17_Chr7g0270251 | 65.330 | 424 | 98 | 5 | 1 | 387 | 1 | 412 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081730 | AT2G47210.3 | 55.765 | 425 | 137 | 9 | 2 | 387 | 5 | 417 | 1.67e-151 | 436 |
| Msa0081730 | AT2G47210.1 | 55.765 | 425 | 137 | 9 | 2 | 387 | 5 | 417 | 1.67e-151 | 436 |
| Msa0081730 | AT2G47210.2 | 55.765 | 425 | 137 | 9 | 2 | 387 | 5 | 417 | 1.67e-151 | 436 |
Find 106 sgRNAs with CRISPR-Local
Find 505 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCAGATTCAAATTGTAAA+TGG | 0.262132 | 1_2:-60401372 | Msa0081730:CDS |
| CAGGGGAAAGAATTGGTAAA+AGG | 0.280477 | 1_2:-60397032 | Msa0081730:CDS |
| TCACATCCATGGAAATATCT+AGG | 0.283658 | 1_2:+60404028 | None:intergenic |
| GTTCCAGATAACACAAGTTC+TGG | 0.296830 | 1_2:-60397161 | Msa0081730:CDS |
| TTATAGGTGTATGCACTTAC+TGG | 0.300360 | 1_2:-60403854 | Msa0081730:intron |
| TTTGTTTCAGCTGCAAAATA+AGG | 0.323047 | 1_2:-60397423 | Msa0081730:intron |
| CGAGGAGTATGAGAAATATT+TGG | 0.337332 | 1_2:-60401162 | Msa0081730:CDS |
| ATCAAACTTTGCTGGAACTT+GGG | 0.341194 | 1_2:-60398712 | Msa0081730:CDS |
| AGCTCAAAACTTTGGCGCTT+CGG | 0.346640 | 1_2:-60404158 | None:intergenic |
| ATCTCCTGTGAAACGTTATA+TGG | 0.347225 | 1_2:+60399941 | None:intergenic |
| CAGTTGATCTGTTTCCTCCT+TGG | 0.354649 | 1_2:+60400417 | None:intergenic |
| AAAGCCTCCTTCAGACAAAA+AGG | 0.356170 | 1_2:-60403783 | Msa0081730:intron |
| ACGTGTTGATCAAACTTTGC+TGG | 0.359797 | 1_2:-60398720 | Msa0081730:CDS |
| TGCAGTGGATCCACTTGTTC+AGG | 0.368298 | 1_2:-60400120 | Msa0081730:intron |
| GATCAAACTTTGCTGGAACT+TGG | 0.378095 | 1_2:-60398713 | Msa0081730:CDS |
| GTAAATGGTGTTCCACCAAC+AGG | 0.383590 | 1_2:-60401357 | Msa0081730:CDS |
| CTGGTTTCAGGGGAAAGAAT+TGG | 0.386698 | 1_2:-60397039 | Msa0081730:intron |
| TGCATTTACCTTGTTATACT+TGG | 0.387949 | 1_2:+60401320 | None:intergenic |
| ATCATGGAAGGCACGACTAT+TGG | 0.390462 | 1_2:+60399177 | None:intergenic |
| GCTTTGTTTGAGAGAGGATC+AGG | 0.395914 | 1_2:+60399897 | None:intergenic |
| ATCCGTAGAAGATGGATTCC+TGG | 0.400770 | 1_2:+60400145 | None:intergenic |
| TCTTCAACAGTTCGAGATGA+AGG | 0.406013 | 1_2:+60400340 | None:intergenic |
| CTTGCTGAATCTTCAGAAAC+AGG | 0.417237 | 1_2:-60397553 | Msa0081730:intron |
| GTCCTTGCCATGCAGTATCC+CGG | 0.421755 | 1_2:-60400181 | Msa0081730:intron |
| AACCTATGCACTTGGACAAA+TGG | 0.426661 | 1_2:-60398783 | Msa0081730:CDS |
| TTTGCATCGAGGCGGAAATC+AGG | 0.427066 | 1_2:-60397195 | Msa0081730:CDS |
| TGAGTTGGATGTTGCTTCAA+AGG | 0.427293 | 1_2:-60399268 | Msa0081730:CDS |
| TTCCAGATAACACAAGTTCT+GGG | 0.430784 | 1_2:-60397160 | Msa0081730:CDS |
| GATTTATTGTTATAGCTGAT+AGG | 0.439661 | 1_2:-60400366 | Msa0081730:CDS |
| TGCATTATCTGTCGATATCA+TGG | 0.441207 | 1_2:+60399161 | None:intergenic |
| TCGAACTGTTGAAGAATTGA+AGG | 0.443297 | 1_2:-60400332 | Msa0081730:CDS |
| AATCAAAATCATCAACTAAA+GGG | 0.449696 | 1_2:-60404118 | Msa0081730:five_prime_UTR |
| TCCTGGCAATTAACATAGCC+CGG | 0.451028 | 1_2:+60400162 | None:intergenic |
| TATCAGCTATAACAATAAAT+CGG | 0.454968 | 1_2:+60400368 | None:intergenic |
| AAATCAAAATCATCAACTAA+AGG | 0.456338 | 1_2:-60404119 | Msa0081730:five_prime_UTR |
| AAATCAACTGCTGGCATAAG+AGG | 0.458830 | 1_2:+60403821 | None:intergenic |
| CACATCCATGGAAATATCTA+GGG | 0.465541 | 1_2:+60404029 | None:intergenic |
| GGGTCACACTGCGAAACAAC+GGG | 0.473685 | 1_2:-60397374 | Msa0081730:CDS |
| AGGGGAAAGAATTGGTAAAA+GGG | 0.484025 | 1_2:-60397031 | Msa0081730:CDS |
| TAAATAATGTGCTTTAGCAT+TGG | 0.486803 | 1_2:+60396929 | None:intergenic |
| CTTGTTGCTTTGTTTGAGAG+AGG | 0.497997 | 1_2:+60399891 | None:intergenic |
| CCCGGGCTATGTTAATTGCC+AGG | 0.503662 | 1_2:-60400163 | Msa0081730:CDS |
| GGTGGAAGTTCTGTATTTGA+TGG | 0.504189 | 1_2:+60399198 | None:intergenic |
| TGATGGAGATACAGTTTCAC+CGG | 0.504548 | 1_2:+60399215 | None:intergenic |
| ATGGAAGGCACGACTATTGG+TGG | 0.505977 | 1_2:+60399180 | None:intergenic |
| CAATCTGCAAGCTCATCAGC+TGG | 0.509587 | 1_2:-60398758 | Msa0081730:CDS |
| GTCGACCACACCTGAACAAG+TGG | 0.512934 | 1_2:+60400110 | None:intergenic |
| CAACATCCAACTCAGACTCT+CGG | 0.518492 | 1_2:+60399277 | None:intergenic |
| AACATCCAACTCAGACTCTC+GGG | 0.521677 | 1_2:+60399278 | None:intergenic |
| TCAAACTTTGCTGGAACTTG+GGG | 0.524390 | 1_2:-60398711 | Msa0081730:intron |
| AGATACAGTTTCACCGGGGT+TGG | 0.525293 | 1_2:+60399221 | None:intergenic |
| TTGAAGGATCGATATTATAG+TGG | 0.527157 | 1_2:-60400316 | Msa0081730:intron |
| AACAGAGACAAATCAACTGC+TGG | 0.529934 | 1_2:+60403812 | None:intergenic |
| ATATAACGTTTCACAGGAGA+TGG | 0.536143 | 1_2:-60399939 | Msa0081730:CDS |
| TGCCAGGAATCCATCTTCTA+CGG | 0.537155 | 1_2:-60400147 | Msa0081730:CDS |
| TGCAGGTCAATTTGAAACCA+AGG | 0.539590 | 1_2:-60397632 | Msa0081730:intron |
| CTTCAACAGTTCGAGATGAA+GGG | 0.541369 | 1_2:+60400341 | None:intergenic |
| CTAGAATTCTTCTCCTGAAG+TGG | 0.542194 | 1_2:+60403970 | None:intergenic |
| ACTGCAACATCCGTAGAAGA+TGG | 0.546115 | 1_2:+60400137 | None:intergenic |
| CACCATTTGTCCAAGTGCAT+AGG | 0.547944 | 1_2:+60398781 | None:intergenic |
| ATAAACCCTAGATATTTCCA+TGG | 0.551041 | 1_2:-60404034 | Msa0081730:exon |
| TCCTTGCCATGCAGTATCCC+GGG | 0.551210 | 1_2:-60400180 | Msa0081730:intron |
| TACCATGCGAAGAGAGGCTA+TGG | 0.556004 | 1_2:+60399134 | None:intergenic |
| CAAGCTCATCAGCTGGACTT+CGG | 0.556264 | 1_2:-60398751 | Msa0081730:CDS |
| ACAAGAGCGAAGAGATGAAG+AGG | 0.556809 | 1_2:-60399873 | Msa0081730:intron |
| AACTGTTTGACTTGTGTGAG+AGG | 0.559257 | 1_2:-60400399 | Msa0081730:CDS |
| TATTCAAGAACCTATGCACT+TGG | 0.559755 | 1_2:-60398791 | Msa0081730:CDS |
| TAGGTGTATGCACTTACTGG+TGG | 0.572395 | 1_2:-60403851 | Msa0081730:CDS |
| AAAGAATAGTCCCCTGTTGG+TGG | 0.572554 | 1_2:+60401345 | None:intergenic |
| GCAGGTCAATTTGAAACCAA+GGG | 0.576834 | 1_2:-60397631 | Msa0081730:intron |
| TTAACTTACCATGCGAAGAG+AGG | 0.578824 | 1_2:+60399128 | None:intergenic |
| GGAACCATATAACGTTTCAC+AGG | 0.582270 | 1_2:-60399945 | Msa0081730:CDS |
| CTTTGTTTGAGAGAGGATCA+GGG | 0.585863 | 1_2:+60399898 | None:intergenic |
| GGTTGCCCGAGAGTCTGAGT+TGG | 0.587360 | 1_2:-60399283 | Msa0081730:CDS |
| ATCTTCTACGGATGTTGCAG+TGG | 0.587379 | 1_2:-60400135 | Msa0081730:CDS |
| CGGGTCACACTGCGAAACAA+CGG | 0.588101 | 1_2:-60397375 | Msa0081730:CDS |
| TACCATAGCCTCTCTTCGCA+TGG | 0.588204 | 1_2:-60399136 | Msa0081730:intron |
| GTTTCAGCTGCAAAATAAGG+AGG | 0.600246 | 1_2:-60397420 | Msa0081730:intron |
| ATTCTTCTCCTGAAGTGGGA+AGG | 0.601079 | 1_2:+60403975 | None:intergenic |
| CCTGGCAATTAACATAGCCC+GGG | 0.603428 | 1_2:+60400163 | None:intergenic |
| GAATTCTTGATTAGAAAGAG+TGG | 0.608290 | 1_2:-60404081 | Msa0081730:five_prime_UTR |
| CGAAACAACGGGAACACCAA+AGG | 0.608995 | 1_2:-60397363 | Msa0081730:intron |
| TTGTGCAAACGTTACAGAGA+GGG | 0.610465 | 1_2:-60399244 | Msa0081730:CDS |
| GCAAAAGAATAGTCCCCTGT+TGG | 0.610779 | 1_2:+60401342 | None:intergenic |
| TAAATGGTGTTCCACCAACA+GGG | 0.611976 | 1_2:-60401356 | Msa0081730:CDS |
| GATGGAGATACAGTTTCACC+GGG | 0.612216 | 1_2:+60399216 | None:intergenic |
| CTGCAAAATAAGGAGGCTGA+AGG | 0.613211 | 1_2:-60397413 | Msa0081730:CDS |
| TAGAATTCTTCTCCTGAAGT+GGG | 0.615625 | 1_2:+60403971 | None:intergenic |
| TCCAGATAACACAAGTTCTG+GGG | 0.616535 | 1_2:-60397159 | Msa0081730:CDS |
| TTATCTGTCGATATCATGGA+AGG | 0.626460 | 1_2:+60399165 | None:intergenic |
| CTGTTTCTGAAGATTCAGCA+AGG | 0.629529 | 1_2:+60397554 | None:intergenic |
| CATAACAAGATACACGGACG+AGG | 0.639523 | 1_2:-60401180 | Msa0081730:CDS |
| TAAAAGGGATCAAAAGCGCA+AGG | 0.653952 | 1_2:-60397016 | Msa0081730:intron |
| ACGTTTCACAGGAGATGGAG+CGG | 0.669816 | 1_2:-60399934 | Msa0081730:CDS |
| CCAGATAACACAAGTTCTGG+GGG | 0.671324 | 1_2:-60397158 | Msa0081730:intron |
| TGCCGACAGCGTTTGCATCG+AGG | 0.672897 | 1_2:-60397206 | Msa0081730:intron |
| TCAGGAGAAGAATTCTAGCG+AGG | 0.675024 | 1_2:-60403965 | Msa0081730:intron |
| GTTACAGAGAGGGCCAACCC+CGG | 0.680256 | 1_2:-60399234 | Msa0081730:CDS |
| ATTTATGTAGAAATGGACCA+AGG | 0.683713 | 1_2:-60400434 | Msa0081730:intron |
| TGAATTACGCATAACGACCA+AGG | 0.689788 | 1_2:-60399711 | Msa0081730:intron |
| CGACAGCGTTTGCATCGAGG+CGG | 0.697782 | 1_2:-60397203 | Msa0081730:intron |
| AAATGGTGTTCCACCAACAG+GGG | 0.698079 | 1_2:-60401355 | Msa0081730:CDS |
| TGTTGACATAACAAGATACA+CGG | 0.700844 | 1_2:-60401186 | Msa0081730:CDS |
| CTTGTGCAAACGTTACAGAG+AGG | 0.710038 | 1_2:-60399245 | Msa0081730:CDS |
| TATGTAGAAATGGACCAAGG+AGG | 0.727348 | 1_2:-60400431 | Msa0081730:intron |
| ATGGAGATACAGTTTCACCG+GGG | 0.808137 | 1_2:+60399217 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTCAATAATTTATTTTTC+TGG | - | chr1_2:60397208-60397227 | Msa0081730:intron | 10.0% |
| !!! | ATTTTCATATAAAAAAAACA+AGG | - | chr1_2:60397509-60397528 | Msa0081730:intron | 10.0% |
| !!! | TTTTCATATAAAAAAAACAA+GGG | - | chr1_2:60397510-60397529 | Msa0081730:intron | 10.0% |
| !! | TAAACGAAAATTATTTAAAT+GGG | + | chr1_2:60398245-60398264 | None:intergenic | 10.0% |
| !! | AAATTATATTTATGTAGAAA+TGG | - | chr1_2:60400655-60400674 | Msa0081730:intron | 10.0% |
| !! | TAAATAATACTTATTAAAAG+GGG | + | chr1_2:60401261-60401280 | None:intergenic | 10.0% |
| !! | ATGTTTAAATAAAATGAAAT+TGG | + | chr1_2:60401582-60401601 | None:intergenic | 10.0% |
| !! | TGAAATAAAAAACGTTAAAT+TGG | + | chr1_2:60397194-60397213 | None:intergenic | 15.0% |
| !!! | TAACTTAATAAGTTGTTATT+TGG | - | chr1_2:60398209-60398228 | Msa0081730:intron | 15.0% |
| !! | GTAAACGAAAATTATTTAAA+TGG | + | chr1_2:60398246-60398265 | None:intergenic | 15.0% |
| !!! | CTTTTCTTATTTAGAATAAT+GGG | + | chr1_2:60398738-60398757 | None:intergenic | 15.0% |
| !!! | ACTTTTCTTATTTAGAATAA+TGG | + | chr1_2:60398739-60398758 | None:intergenic | 15.0% |
| !! | AGTTATGAACAAAAAATATT+AGG | - | chr1_2:60399318-60399337 | Msa0081730:intron | 15.0% |
| !!! | CAAATATAGAAATATTGTTT+TGG | + | chr1_2:60400283-60400302 | None:intergenic | 15.0% |
| !!! | AAATAAACAACTTTTAAGTT+AGG | + | chr1_2:60400346-60400365 | None:intergenic | 15.0% |
| !! | TCTACATAAATATAATTTCA+TGG | + | chr1_2:60400653-60400672 | None:intergenic | 15.0% |
| !! | AAACTAAGAATAAAAGAAAA+TGG | + | chr1_2:60400850-60400869 | None:intergenic | 15.0% |
| !!! | AACATTTTTTTTATTTGTTC+AGG | - | chr1_2:60401597-60401616 | Msa0081730:intron | 15.0% |
| !!! | ACATTTTTTTTATTTGTTCA+GGG | - | chr1_2:60401598-60401617 | Msa0081730:intron | 15.0% |
| !! | ATATTTATATTCCACAAATT+TGG | + | chr1_2:60401723-60401742 | None:intergenic | 15.0% |
| !!! | TATTTGATTTTGTTTCTTTT+AGG | - | chr1_2:60401792-60401811 | Msa0081730:intron | 15.0% |
| !!! | TACTAATGTCATTTTTTTAT+AGG | - | chr1_2:60403596-60403615 | Msa0081730:intron | 15.0% |
| !! | AAATCAAAATCATCAACTAA+AGG | - | chr1_2:60396977-60396996 | Msa0081730:intron | 20.0% |
| !! | AATCAAAATCATCAACTAAA+GGG | - | chr1_2:60396978-60396997 | Msa0081730:intron | 20.0% |
| !!! | AGGTATTTTTTTTTTCTTGT+TGG | - | chr1_2:60397333-60397352 | Msa0081730:intron | 20.0% |
| !!! | AAGAAGATTGTAAATTTTTC+CGG | + | chr1_2:60397536-60397555 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTATAATAGTAAC+CGG | + | chr1_2:60397920-60397939 | None:intergenic | 20.0% |
| !!! | AAGCAAAAAAACACTTTTTT+AGG | - | chr1_2:60397931-60397950 | Msa0081730:intron | 20.0% |
| !! | TCATAAGAAGATACATTATT+AGG | - | chr1_2:60398134-60398153 | Msa0081730:intron | 20.0% |
| !!! | TTTCAGTCAATAATTTGTTT+AGG | + | chr1_2:60398575-60398594 | None:intergenic | 20.0% |
| !!! | AACAAATTATTGACTGAAAT+TGG | - | chr1_2:60398576-60398595 | Msa0081730:intron | 20.0% |
| !!! | ACAAATTATTGACTGAAATT+GGG | - | chr1_2:60398577-60398596 | Msa0081730:intron | 20.0% |
| !! | ATACCATATCTAAATATCTT+CGG | + | chr1_2:60399499-60399518 | None:intergenic | 20.0% |
| !! | TTGATTCATTAATTGGAAAA+TGG | - | chr1_2:60399647-60399666 | Msa0081730:intron | 20.0% |
| !! | TGATTCATTAATTGGAAAAT+GGG | - | chr1_2:60399648-60399667 | Msa0081730:intron | 20.0% |
| !! | ATAGTTAGAATGTATATGAA+AGG | - | chr1_2:60400126-60400145 | Msa0081730:CDS | 20.0% |
| !! | TATCAGCTATAACAATAAAT+CGG | + | chr1_2:60400731-60400750 | None:intergenic | 20.0% |
| !! | AGAGAAAATGAAGTAAATAT+AGG | - | chr1_2:60401305-60401324 | Msa0081730:intron | 20.0% |
| !! | ATGAAGTAAATATAGGTATT+AGG | - | chr1_2:60401312-60401331 | Msa0081730:intron | 20.0% |
| !!! | CATTTTTTTTATTTGTTCAG+GGG | - | chr1_2:60401599-60401618 | Msa0081730:intron | 20.0% |
| !! | TCAAGAAATATAGAATAACA+AGG | - | chr1_2:60402100-60402119 | Msa0081730:intron | 20.0% |
| !! | TTCTTTGTATTCTACATATT+TGG | - | chr1_2:60403123-60403142 | Msa0081730:intron | 20.0% |
| !!! | ACTTCCTGATAATAATTTTA+AGG | - | chr1_2:60403414-60403433 | Msa0081730:intron | 20.0% |
| !! | TTGACCTTAAAATTATTATC+AGG | + | chr1_2:60403421-60403440 | None:intergenic | 20.0% |
| !! | AGAAAAAAAAATCTAACCTT+TGG | + | chr1_2:60403752-60403771 | None:intergenic | 20.0% |
| !! | AAAAATACCTTTTTGTCTGA+AGG | + | chr1_2:60397323-60397342 | None:intergenic | 25.0% |
| !!! | TTTTTTTTCTTGTTGGTTGT+TGG | - | chr1_2:60397340-60397359 | Msa0081730:intron | 25.0% |
| ! | TGTTTGAACAAAATTAGAGT+CGG | - | chr1_2:60397399-60397418 | Msa0081730:CDS | 25.0% |
| ! | GGAAAAATTTACAATCTTCT+TGG | - | chr1_2:60397535-60397554 | Msa0081730:intron | 25.0% |
| ! | AAACAGAATCTATATCCTAT+GGG | + | chr1_2:60397708-60397727 | None:intergenic | 25.0% |
| !!! | AAAACACTTTTTTAGGTTCA+TGG | - | chr1_2:60397938-60397957 | Msa0081730:intron | 25.0% |
| !!! | TTTTAGGTTCATTGAATAAC+AGG | + | chr1_2:60398002-60398021 | None:intergenic | 25.0% |
| ! | TTATTCAATGAACCTAAAAG+TGG | - | chr1_2:60398003-60398022 | Msa0081730:intron | 25.0% |
| !!! | AAAAACCAAAAACCACTTTT+AGG | + | chr1_2:60398018-60398037 | None:intergenic | 25.0% |
| ! | TAAAATAAGTCAATCCAAAC+TGG | - | chr1_2:60398110-60398129 | Msa0081730:intron | 25.0% |
| ! | ATTATTAGGAAGAAGAAAGA+AGG | - | chr1_2:60398148-60398167 | Msa0081730:intron | 25.0% |
| !!! | ATAAGTTGTTATTTGGTACT+TGG | - | chr1_2:60398216-60398235 | Msa0081730:intron | 25.0% |
| ! | TCTTAAAAGCTTAGGTTATT+AGG | + | chr1_2:60398642-60398661 | None:intergenic | 25.0% |
| ! | ATTGACTATCTTAAAAGCTT+AGG | + | chr1_2:60398650-60398669 | None:intergenic | 25.0% |
| ! | AAGATAGTCAATCAATGATA+TGG | - | chr1_2:60398658-60398677 | Msa0081730:intron | 25.0% |
| !! | TTAGAATAATGGGATCAATA+AGG | + | chr1_2:60398728-60398747 | None:intergenic | 25.0% |
| ! | AATTTCAACAATATGTTGTG+TGG | - | chr1_2:60398761-60398780 | Msa0081730:CDS | 25.0% |
| ! | ATTTCAACAATATGTTGTGT+GGG | - | chr1_2:60398762-60398781 | Msa0081730:CDS | 25.0% |
| ! | CCAATTATTGTAAAAGCTTA+AGG | + | chr1_2:60398868-60398887 | None:intergenic | 25.0% |
| !! | CCTTAAGCTTTTACAATAAT+TGG | - | chr1_2:60398865-60398884 | Msa0081730:intron | 25.0% |
| ! | ATTTATAACGATGCAGATAT+TGG | - | chr1_2:60399196-60399215 | Msa0081730:CDS | 25.0% |
| ! | TTTATAACGATGCAGATATT+GGG | - | chr1_2:60399197-60399216 | Msa0081730:CDS | 25.0% |
| ! | GTATGCTTTGATTCATTAAT+TGG | - | chr1_2:60399640-60399659 | Msa0081730:intron | 25.0% |
| ! | TTGTGAATCAAATCATGAAT+AGG | + | chr1_2:60399678-60399697 | None:intergenic | 25.0% |
| !! | GCTACAAAAAACTGAATTTT+AGG | - | chr1_2:60400053-60400072 | Msa0081730:intron | 25.0% |
| ! | CATATACATTCTAACTATAC+AGG | + | chr1_2:60400124-60400143 | None:intergenic | 25.0% |
| !! | AAAGTTGTTTATTTGCTAGT+TGG | - | chr1_2:60400352-60400371 | Msa0081730:CDS | 25.0% |
| !!! | TTCTGTGTTATTTTAAGAGT+TGG | - | chr1_2:60400549-60400568 | Msa0081730:intron | 25.0% |
| ! | GATTTATTGTTATAGCTGAT+AGG | - | chr1_2:60400730-60400749 | Msa0081730:intron | 25.0% |
| !! | AATAAAACCTTTTCAGCATT+AGG | - | chr1_2:60401083-60401102 | Msa0081730:intron | 25.0% |
| ! | TTAACTACTGTATTATATGC+AGG | - | chr1_2:60401337-60401356 | Msa0081730:CDS | 25.0% |
| ! | ACAACCATTAAAAATTACCT+TGG | + | chr1_2:60401405-60401424 | None:intergenic | 25.0% |
| ! | ATGACACTTATAATTACATG+TGG | - | chr1_2:60401431-60401450 | Msa0081730:intron | 25.0% |
| !! | AAAGGCATAATTAGATAGTA+TGG | + | chr1_2:60401476-60401495 | None:intergenic | 25.0% |
| ! | ATGAGAAAAACTAAGCAAAA+AGG | + | chr1_2:60401494-60401513 | None:intergenic | 25.0% |
| !! | TAGGTTATTGTTAGTTTCAT+TGG | - | chr1_2:60401683-60401702 | Msa0081730:intron | 25.0% |
| ! | TTAGTTTCATTGGATCAATT+GGG | - | chr1_2:60401693-60401712 | Msa0081730:intron | 25.0% |
| ! | AAATATTTACACCCAAACTT+TGG | - | chr1_2:60401737-60401756 | Msa0081730:intron | 25.0% |
| ! | TTATGAAAATTTGACTGTAG+AGG | - | chr1_2:60402139-60402158 | Msa0081730:intron | 25.0% |
| ! | TTGAAAATTGTGTTTCACAA+GGG | + | chr1_2:60402212-60402231 | None:intergenic | 25.0% |
| !! | AGGGTATCATATAATGTTAT+TGG | + | chr1_2:60402493-60402512 | None:intergenic | 25.0% |
| ! | ATTCTACATTTCACTATTTC+AGG | - | chr1_2:60402516-60402535 | Msa0081730:intron | 25.0% |
| ! | AAACTTTCAAATAACGTTTC+TGG | - | chr1_2:60402804-60402823 | Msa0081730:intron | 25.0% |
| ! | TCTCACATTTCAAACATAAA+TGG | - | chr1_2:60402996-60403015 | Msa0081730:intron | 25.0% |
| !!! | AGTTTCAGCTTTTAGTTTAA+TGG | - | chr1_2:60403080-60403099 | Msa0081730:intron | 25.0% |
| !!! | GTTTCAGCTTTTAGTTTAAT+GGG | - | chr1_2:60403081-60403100 | Msa0081730:intron | 25.0% |
| ! | AATTGGACTACATTCATTAA+TGG | + | chr1_2:60403339-60403358 | None:intergenic | 25.0% |
| GAATTCTTGATTAGAAAGAG+TGG | - | chr1_2:60397015-60397034 | Msa0081730:intron | 30.0% | |
| ATAAACCCTAGATATTTCCA+TGG | - | chr1_2:60397062-60397081 | Msa0081730:intron | 30.0% | |
| ! | AAGGATATTTTTCACATCCA+TGG | + | chr1_2:60397082-60397101 | None:intergenic | 30.0% |
| ATGGATGTGAAAAATATCCT+TGG | - | chr1_2:60397081-60397100 | Msa0081730:intron | 30.0% | |
| !! | ATTTTTCACCAAAGCACTTA+GGG | - | chr1_2:60397163-60397182 | Msa0081730:CDS | 30.0% |
| !! | TCTGGTGTTGTTGAATTTAT+AGG | - | chr1_2:60397226-60397245 | Msa0081730:intron | 30.0% |
| AACAAAATTAGAGTCGGAAA+CGG | - | chr1_2:60397405-60397424 | Msa0081730:CDS | 30.0% | |
| CATATAAAAAAAACAAGGGC+CGG | - | chr1_2:60397514-60397533 | Msa0081730:intron | 30.0% | |
| GATATACAACATGTCAAGTT+TGG | - | chr1_2:60397587-60397606 | Msa0081730:CDS | 30.0% | |
| AACAGAATCTATATCCTATG+GGG | + | chr1_2:60397707-60397726 | None:intergenic | 30.0% | |
| CAAACAGAATCTATATCCTA+TGG | + | chr1_2:60397709-60397728 | None:intergenic | 30.0% | |
| CATAGGATATAGATTCTGTT+TGG | - | chr1_2:60397707-60397726 | Msa0081730:intron | 30.0% | |
| !! | TGTTTTTATGAGCTATTACG+AGG | - | chr1_2:60397847-60397866 | Msa0081730:intron | 30.0% |
| TTCATTGAATAACAGGTATC+TGG | + | chr1_2:60397995-60398014 | None:intergenic | 30.0% | |
| ! | ATGAACCTAAAAGTGGTTTT+TGG | - | chr1_2:60398010-60398029 | Msa0081730:intron | 30.0% |
| CACTCTAAATCTTTCTTCTT+CGG | + | chr1_2:60398268-60398287 | None:intergenic | 30.0% | |
| TTCAATAGATTCTCAGACAT+TGG | + | chr1_2:60398504-60398523 | None:intergenic | 30.0% | |
| !! | GAAGAAGAAAAGTACCAAAT+AGG | - | chr1_2:60398521-60398540 | Msa0081730:intron | 30.0% |
| ATTAGGTGAGAGCAATTTAA+TGG | + | chr1_2:60398625-60398644 | None:intergenic | 30.0% | |
| GTCAATCAATGATATGGATA+TGG | - | chr1_2:60398664-60398683 | Msa0081730:intron | 30.0% | |
| CAATGATATGGATATGGTAT+TGG | - | chr1_2:60398670-60398689 | Msa0081730:intron | 30.0% | |
| !!! | TTTGATTTTTTCCCTCATTC+AGG | - | chr1_2:60398910-60398929 | Msa0081730:intron | 30.0% |
| ! | TTACGAGCAGAATTTTTGAA+AGG | + | chr1_2:60398953-60398972 | None:intergenic | 30.0% |
| ATGCTCCAAGATAACATAAA+GGG | + | chr1_2:60399039-60399058 | None:intergenic | 30.0% | |
| TTATAACGATGCAGATATTG+GGG | - | chr1_2:60399198-60399217 | Msa0081730:CDS | 30.0% | |
| !! | TTTGTTCATAACTTGTTTGC+AGG | + | chr1_2:60399311-60399330 | None:intergenic | 30.0% |
| ! | AGAAGATTGGTAATAGTGTT+GGG | - | chr1_2:60399379-60399398 | Msa0081730:intron | 30.0% |
| ACACCGAAGATATTTAGATA+TGG | - | chr1_2:60399493-60399512 | Msa0081730:intron | 30.0% | |
| ! | GATTCACAATTTGATGATCA+CGG | - | chr1_2:60399689-60399708 | Msa0081730:intron | 30.0% |
| CAGCAGATTCAAATTGTAAA+TGG | - | chr1_2:60399724-60399743 | Msa0081730:CDS | 30.0% | |
| ! | TTCTTTTGCCAAGTATAACA+AGG | - | chr1_2:60399768-60399787 | Msa0081730:intron | 30.0% |
| ! | TGCATTTACCTTGTTATACT+TGG | + | chr1_2:60399779-60399798 | None:intergenic | 30.0% |
| AAGTATAACAAGGTAAATGC+AGG | - | chr1_2:60399778-60399797 | Msa0081730:intron | 30.0% | |
| ! | TTCTGATTTTCTATCTTGAC+TGG | - | chr1_2:60399834-60399853 | Msa0081730:intron | 30.0% |
| ! | TCTGATTTTCTATCTTGACT+GGG | - | chr1_2:60399835-60399854 | Msa0081730:intron | 30.0% |
| TGTTGACATAACAAGATACA+CGG | - | chr1_2:60399910-60399929 | Msa0081730:CDS | 30.0% | |
| AAATATTTGGCAAATCCTGT+AGG | - | chr1_2:60399947-60399966 | Msa0081730:CDS | 30.0% | |
| ! | TGTTGTTTAAGCAATCTCAA+AGG | + | chr1_2:60400015-60400034 | None:intergenic | 30.0% |
| ! | ATGTATATGAAAGGCCTTTT+CGG | - | chr1_2:60400135-60400154 | Msa0081730:CDS | 30.0% |
| TTAAGATGTATACACCGAAA+AGG | + | chr1_2:60400152-60400171 | None:intergenic | 30.0% | |
| ! | TTCGGTGTATACATCTTAAA+AGG | - | chr1_2:60400153-60400172 | Msa0081730:CDS | 30.0% |
| CTTCCTTAACTGTATCTTTA+GGG | + | chr1_2:60400194-60400213 | None:intergenic | 30.0% | |
| ! | TTTTTATAACCAATGCCCTA+AGG | - | chr1_2:60400303-60400322 | Msa0081730:intron | 30.0% |
| ! | TTTTATAACCAATGCCCTAA+GGG | - | chr1_2:60400304-60400323 | Msa0081730:intron | 30.0% |
| GGGTAAGTGCATTTATAAAA+CGG | + | chr1_2:60400511-60400530 | None:intergenic | 30.0% | |
| ATTTATGTAGAAATGGACCA+AGG | - | chr1_2:60400662-60400681 | Msa0081730:intron | 30.0% | |
| TTGAAGGATCGATATTATAG+TGG | - | chr1_2:60400780-60400799 | Msa0081730:intron | 30.0% | |
| ! | TTCAGCAATTCTTTTTGCTT+CGG | + | chr1_2:60401369-60401388 | None:intergenic | 30.0% |
| ! | ACGACCAAGGTAATTTTTAA+TGG | - | chr1_2:60401398-60401417 | Msa0081730:intron | 30.0% |
| ACTTATAATTACATGTGGAG+AGG | - | chr1_2:60401436-60401455 | Msa0081730:intron | 30.0% | |
| GAAACATCTCTTAGTATTTG+AGG | + | chr1_2:60401534-60401553 | None:intergenic | 30.0% | |
| ! | GTTAGTTTCATTGGATCAAT+TGG | - | chr1_2:60401692-60401711 | Msa0081730:intron | 30.0% |
| TAGTTTCATTGGATCAATTG+GGG | - | chr1_2:60401694-60401713 | Msa0081730:intron | 30.0% | |
| CGCATGGTAAGTTAAAAATA+AGG | - | chr1_2:60401976-60401995 | Msa0081730:intron | 30.0% | |
| CTTGAAAATTGTGTTTCACA+AGG | + | chr1_2:60402213-60402232 | None:intergenic | 30.0% | |
| !! | CACAATTTTCAAGCATTTGT+TGG | - | chr1_2:60402220-60402239 | Msa0081730:intron | 30.0% |
| ACATCAGAAATGCATTAAAG+AGG | + | chr1_2:60402423-60402442 | None:intergenic | 30.0% | |
| !! | TAATGTTATTGGTACTGATC+AGG | + | chr1_2:60402482-60402501 | None:intergenic | 30.0% |
| TAGTGAAATGTAGAATGCAA+GGG | + | chr1_2:60402512-60402531 | None:intergenic | 30.0% | |
| ATAGTGAAATGTAGAATGCA+AGG | + | chr1_2:60402513-60402532 | None:intergenic | 30.0% | |
| ACATTTCACTATTTCAGGAT+TGG | - | chr1_2:60402521-60402540 | Msa0081730:intron | 30.0% | |
| TGGTTAATGAGTTTCAGTTA+AGG | + | chr1_2:60402721-60402740 | None:intergenic | 30.0% | |
| CAAGTAGTGTCTTAATAGTT+CGG | - | chr1_2:60402865-60402884 | Msa0081730:intron | 30.0% | |
| ! | GTATTTCTATTAGAAGCCTA+AGG | + | chr1_2:60403265-60403284 | None:intergenic | 30.0% |
| GGTATTTCGTCTTCAAAAAA+AGG | + | chr1_2:60403391-60403410 | None:intergenic | 30.0% | |
| ! | AAATTATTATCAGGAAGTGC+AGG | + | chr1_2:60403412-60403431 | None:intergenic | 30.0% |
| TTTCTTTGTACTATGATTGC+AGG | - | chr1_2:60403447-60403466 | Msa0081730:intron | 30.0% | |
| GCTGAAACAAATTAAAGACA+CGG | + | chr1_2:60403664-60403683 | None:intergenic | 30.0% | |
| TTTGTTTCAGCTGCAAAATA+AGG | - | chr1_2:60403673-60403692 | Msa0081730:intron | 30.0% | |
| ! | CCATTCTTTTTCTCAAATCA+CGG | - | chr1_2:60403850-60403869 | Msa0081730:CDS | 30.0% |
| ! | CATTCTTTTTCTCAAATCAC+GGG | - | chr1_2:60403851-60403870 | Msa0081730:CDS | 30.0% |
| TAGATGAAATTTCTAACGCT+TGG | + | chr1_2:60404007-60404026 | None:intergenic | 30.0% | |
| CACATCCATGGAAATATCTA+GGG | + | chr1_2:60397070-60397089 | None:intergenic | 35.0% | |
| TCACATCCATGGAAATATCT+AGG | + | chr1_2:60397071-60397090 | None:intergenic | 35.0% | |
| GATGTGAAAAATATCCTTGG+AGG | - | chr1_2:60397084-60397103 | Msa0081730:intron | 35.0% | |
| AAAAATTGGGTAATCCTCCA+AGG | + | chr1_2:60397101-60397120 | None:intergenic | 35.0% | |
| TGAAGTGGGAAGGAAAAATT+GGG | + | chr1_2:60397114-60397133 | None:intergenic | 35.0% | |
| TAGAATTCTTCTCCTGAAGT+GGG | + | chr1_2:60397128-60397147 | None:intergenic | 35.0% | |
| !! | CATTTTTCACCAAAGCACTT+AGG | - | chr1_2:60397162-60397181 | Msa0081730:CDS | 35.0% |
| TTATAGGTGTATGCACTTAC+TGG | - | chr1_2:60397242-60397261 | Msa0081730:intron | 35.0% | |
| ! | AATACCTTTTTGTCTGAAGG+AGG | + | chr1_2:60397320-60397339 | None:intergenic | 35.0% |
| TTGTGATTAGTGTTGCAGTA+TGG | - | chr1_2:60397365-60397384 | Msa0081730:CDS | 35.0% | |
| ACAAAATTAGAGTCGGAAAC+GGG | - | chr1_2:60397406-60397425 | Msa0081730:CDS | 35.0% | |
| TGCTTATAATAGTAACCGGA+GGG | + | chr1_2:60397916-60397935 | None:intergenic | 35.0% | |
| TTGCTTATAATAGTAACCGG+AGG | + | chr1_2:60397917-60397936 | None:intergenic | 35.0% | |
| !!! | TTTGGTTTTTATAGTGACCG+AGG | - | chr1_2:60398028-60398047 | Msa0081730:intron | 35.0% |
| GTTAATGACATGTACTTCCT+CGG | + | chr1_2:60398048-60398067 | None:intergenic | 35.0% | |
| AAGTAATTGTGCAACTGCTT+GGG | + | chr1_2:60398074-60398093 | None:intergenic | 35.0% | |
| TAAGTAATTGTGCAACTGCT+TGG | + | chr1_2:60398075-60398094 | None:intergenic | 35.0% | |
| TATCTTCTTATGAGCCAGTT+TGG | + | chr1_2:60398127-60398146 | None:intergenic | 35.0% | |
| !! | TCTGTTTGGCACTTGTTTTT+GGG | - | chr1_2:60398425-60398444 | Msa0081730:intron | 35.0% |
| GGTTCATAAACACACATGAA+TGG | + | chr1_2:60398475-60398494 | None:intergenic | 35.0% | |
| !! | ATTCTCAGACATTGGCTTAT+AGG | + | chr1_2:60398496-60398515 | None:intergenic | 35.0% |
| !! | GAAGAAAAGTACCAAATAGG+TGG | - | chr1_2:60398524-60398543 | Msa0081730:intron | 35.0% |
| ! | ACCTCTAGAAAACTTGGTTA+GGG | + | chr1_2:60398701-60398720 | None:intergenic | 35.0% |
| TTACAAACGAACTTACCCAA+TGG | + | chr1_2:60398994-60399013 | None:intergenic | 35.0% | |
| GTTAGCCCTTTATGTTATCT+TGG | - | chr1_2:60399031-60399050 | Msa0081730:intron | 35.0% | |
| CATGCTCCAAGATAACATAA+AGG | + | chr1_2:60399040-60399059 | None:intergenic | 35.0% | |
| CTTTATGTTATCTTGGAGCA+TGG | - | chr1_2:60399038-60399057 | Msa0081730:intron | 35.0% | |
| ACACTTCATGCAATCTGTTT+GGG | + | chr1_2:60399122-60399141 | None:intergenic | 35.0% | |
| AACACTTCATGCAATCTGTT+TGG | + | chr1_2:60399123-60399142 | None:intergenic | 35.0% | |
| TTATAAATGCAACGGAGTTG+GGG | + | chr1_2:60399184-60399203 | None:intergenic | 35.0% | |
| GTTATAAATGCAACGGAGTT+GGG | + | chr1_2:60399185-60399204 | None:intergenic | 35.0% | |
| CTGCATCGTTATAAATGCAA+CGG | + | chr1_2:60399192-60399211 | None:intergenic | 35.0% | |
| TATAACGATGCAGATATTGG+GGG | - | chr1_2:60399199-60399218 | Msa0081730:CDS | 35.0% | |
| AGAGAGCTAAACAATCAATG+TGG | - | chr1_2:60399228-60399247 | Msa0081730:CDS | 35.0% | |
| GAGAGCTAAACAATCAATGT+GGG | - | chr1_2:60399229-60399248 | Msa0081730:CDS | 35.0% | |
| AGAGCTAAACAATCAATGTG+GGG | - | chr1_2:60399230-60399249 | Msa0081730:CDS | 35.0% | |
| !! | GAATGGATTTGGTAATGAGT+GGG | - | chr1_2:60399257-60399276 | Msa0081730:CDS | 35.0% |
| ! | GAGAAGATTGGTAATAGTGT+TGG | - | chr1_2:60399378-60399397 | Msa0081730:intron | 35.0% |
| ! | GAAGATTGGTAATAGTGTTG+GGG | - | chr1_2:60399380-60399399 | Msa0081730:intron | 35.0% |
| AAATGGGCAGCTGAAAATAT+AGG | - | chr1_2:60399545-60399564 | Msa0081730:intron | 35.0% | |
| AATGGGCAGCTGAAAATATA+GGG | - | chr1_2:60399546-60399565 | Msa0081730:intron | 35.0% | |
| AAATCAGAAAAATGCAGACC+AGG | + | chr1_2:60399823-60399842 | None:intergenic | 35.0% | |
| ! | CGAGGAGTATGAGAAATATT+TGG | - | chr1_2:60399934-60399953 | Msa0081730:CDS | 35.0% |
| AATCTAGACATGATACCTAC+AGG | + | chr1_2:60399965-60399984 | None:intergenic | 35.0% | |
| ! | GGTGATGATGTATCATGTTA+AGG | - | chr1_2:60400074-60400093 | Msa0081730:intron | 35.0% |
| GTTCCCTAAAGATACAGTTA+AGG | - | chr1_2:60400188-60400207 | Msa0081730:intron | 35.0% | |
| GCTTCCTTAACTGTATCTTT+AGG | + | chr1_2:60400195-60400214 | None:intergenic | 35.0% | |
| AGTTGGATTTCGATATGCAT+TGG | - | chr1_2:60400566-60400585 | Msa0081730:intron | 35.0% | |
| GATATGCATTGGACATTCTA+CGG | - | chr1_2:60400577-60400596 | Msa0081730:intron | 35.0% | |
| ATATGCATTGGACATTCTAC+GGG | - | chr1_2:60400578-60400597 | Msa0081730:intron | 35.0% | |
| TCGAACTGTTGAAGAATTGA+AGG | - | chr1_2:60400764-60400783 | Msa0081730:intron | 35.0% | |
| GTTATATGGTTCCTGCATTA+AGG | + | chr1_2:60401144-60401163 | None:intergenic | 35.0% | |
| ATCTCCTGTGAAACGTTATA+TGG | + | chr1_2:60401158-60401177 | None:intergenic | 35.0% | |
| ATATAACGTTTCACAGGAGA+TGG | - | chr1_2:60401157-60401176 | Msa0081730:CDS | 35.0% | |
| ! | ACAGTTCTAATTTCATTCCC+AGG | + | chr1_2:60401625-60401644 | None:intergenic | 35.0% |
| CCTACTCTCAGTGAAAATAT+AGG | + | chr1_2:60401667-60401686 | None:intergenic | 35.0% | |
| ! | CCTATATTTTCACTGAGAGT+AGG | - | chr1_2:60401664-60401683 | Msa0081730:intron | 35.0% |
| AATTGGGGAAACCAAATTTG+TGG | - | chr1_2:60401709-60401728 | Msa0081730:intron | 35.0% | |
| TGTCAACAGAAAAGAGACAT+CGG | + | chr1_2:60402017-60402036 | None:intergenic | 35.0% | |
| ! | TTCTTTCTCTTTTTGTGCTG+GGG | + | chr1_2:60402075-60402094 | None:intergenic | 35.0% |
| ! | GTTCTTTCTCTTTTTGTGCT+GGG | + | chr1_2:60402076-60402095 | None:intergenic | 35.0% |
| ! | TGTTCTTTCTCTTTTTGTGC+TGG | + | chr1_2:60402077-60402096 | None:intergenic | 35.0% |
| TATTCAAGAACCTATGCACT+TGG | - | chr1_2:60402305-60402324 | Msa0081730:intron | 35.0% | |
| ATCAAACTTTGCTGGAACTT+GGG | - | chr1_2:60402384-60402403 | Msa0081730:intron | 35.0% | |
| TCAACCACTTGGTTTACTTT+GGG | - | chr1_2:60402748-60402767 | Msa0081730:intron | 35.0% | |
| TTAAGACACTACTTGAGCTA+AGG | + | chr1_2:60402860-60402879 | None:intergenic | 35.0% | |
| ATTGTAGACACACTTGATCA+TGG | + | chr1_2:60402963-60402982 | None:intergenic | 35.0% | |
| GGTTCAAACTTAAATGAGCT+TGG | + | chr1_2:60403191-60403210 | None:intergenic | 35.0% | |
| ! | AGCTCATTTAAGTTTGAACC+TGG | - | chr1_2:60403191-60403210 | Msa0081730:intron | 35.0% |
| TTTCTATTAGAAGCCTAAGG+AGG | + | chr1_2:60403262-60403281 | None:intergenic | 35.0% | |
| ! | TCTTCAAAAAAAGGAAGTGC+AGG | + | chr1_2:60403382-60403401 | None:intergenic | 35.0% |
| GTTAGTGAACAAACCAATGT+TGG | + | chr1_2:60403632-60403651 | None:intergenic | 35.0% | |
| CCGTGATTTGAGAAAAAGAA+TGG | + | chr1_2:60403853-60403872 | None:intergenic | 35.0% | |
| TTCCAGATAACACAAGTTCT+GGG | - | chr1_2:60403936-60403955 | Msa0081730:intron | 35.0% | |
| ATTGTATGCATGCAATGAAC+TGG | - | chr1_2:60404038-60404057 | Msa0081730:five_prime_UTR | 35.0% | |
| AGGGGAAAGAATTGGTAAAA+GGG | - | chr1_2:60404065-60404084 | Msa0081730:five_prime_UTR | 35.0% | |
| CTGAAGTGGGAAGGAAAAAT+TGG | + | chr1_2:60397115-60397134 | None:intergenic | 40.0% | |
| ! | CAATTTTTCCTTCCCACTTC+AGG | - | chr1_2:60397113-60397132 | Msa0081730:intron | 40.0% |
| CTAGAATTCTTCTCCTGAAG+TGG | + | chr1_2:60397129-60397148 | None:intergenic | 40.0% | |
| TGGTTAAACCCTAAGTGCTT+TGG | + | chr1_2:60397174-60397193 | None:intergenic | 40.0% | |
| AAATCAACTGCTGGCATAAG+AGG | + | chr1_2:60397278-60397297 | None:intergenic | 40.0% | |
| AACAGAGACAAATCAACTGC+TGG | + | chr1_2:60397287-60397306 | None:intergenic | 40.0% | |
| AAAGCCTCCTTCAGACAAAA+AGG | - | chr1_2:60397313-60397332 | Msa0081730:intron | 40.0% | |
| CAAAATTAGAGTCGGAAACG+GGG | - | chr1_2:60397407-60397426 | Msa0081730:CDS | 40.0% | |
| AATAACTTACGTACTCCCTC+CGG | - | chr1_2:60397898-60397917 | Msa0081730:intron | 40.0% | |
| !! | GTCTGTTTGGCACTTGTTTT+TGG | - | chr1_2:60398424-60398443 | Msa0081730:intron | 40.0% |
| !!! | TTTGGCACTTGTTTTTGGGT+AGG | - | chr1_2:60398429-60398448 | Msa0081730:intron | 40.0% |
| !!! | ACTTGTTTTTGGGTAGGTTG+AGG | - | chr1_2:60398435-60398454 | Msa0081730:intron | 40.0% |
| ! | TAGGTTGAGGAATTCATGCA+TGG | - | chr1_2:60398448-60398467 | Msa0081730:intron | 40.0% |
| GCATGTACTATCCACCTATT+TGG | + | chr1_2:60398538-60398557 | None:intergenic | 40.0% | |
| ! | TCCCTAACCAAGTTTTCTAG+AGG | - | chr1_2:60398697-60398716 | Msa0081730:intron | 40.0% |
| ! | GACCTCTAGAAAACTTGGTT+AGG | + | chr1_2:60398702-60398721 | None:intergenic | 40.0% |
| TTGAAGCCTAAACAATGTCC+GGG | + | chr1_2:60398788-60398807 | None:intergenic | 40.0% | |
| CTTGAAGCCTAAACAATGTC+CGG | + | chr1_2:60398789-60398808 | None:intergenic | 40.0% | |
| ACCTCATACAAGAGCCATTT+GGG | + | chr1_2:60398812-60398831 | None:intergenic | 40.0% | |
| TTTCCCTCATTCAGGTCATT+TGG | - | chr1_2:60398918-60398937 | Msa0081730:intron | 40.0% | |
| ATGATCTTCAGCTTCACCAT+TGG | - | chr1_2:60398975-60398994 | Msa0081730:intron | 40.0% | |
| TGATCTTCAGCTTCACCATT+GGG | - | chr1_2:60398976-60398995 | Msa0081730:intron | 40.0% | |
| TGGAAATATTGCCTCTTCCA+TGG | - | chr1_2:60399058-60399077 | Msa0081730:intron | 40.0% | |
| TAAGGATATGCATCGGAATG+CGG | + | chr1_2:60399094-60399113 | None:intergenic | 40.0% | |
| ! | GATTGCATGAAGTGTTTCCT+TGG | - | chr1_2:60399127-60399146 | Msa0081730:intron | 40.0% |
| GTGAATCTGGCACATTATTC+TGG | + | chr1_2:60399156-60399175 | None:intergenic | 40.0% | |
| CGTTATAAATGCAACGGAGT+TGG | + | chr1_2:60399186-60399205 | None:intergenic | 40.0% | |
| CTAAACAATCAATGTGGGGT+GGG | - | chr1_2:60399234-60399253 | Msa0081730:CDS | 40.0% | |
| TAAACAATCAATGTGGGGTG+GGG | - | chr1_2:60399235-60399254 | Msa0081730:CDS | 40.0% | |
| !! | GGAATGGATTTGGTAATGAG+TGG | - | chr1_2:60399256-60399275 | Msa0081730:CDS | 40.0% |
| ! | TGCAAGAATCTTGTTTGCTG+CGG | - | chr1_2:60399283-60399302 | Msa0081730:CDS | 40.0% |
| !!! | CAATGGAGGCTTGTCATTTT+AGG | + | chr1_2:60399418-60399437 | None:intergenic | 40.0% |
| CTAAAATGACAAGCCTCCAT+TGG | - | chr1_2:60399416-60399435 | Msa0081730:intron | 40.0% | |
| TTAATTGTCCTTGCCAATGG+AGG | + | chr1_2:60399432-60399451 | None:intergenic | 40.0% | |
| AGCTTAATTGTCCTTGCCAA+TGG | + | chr1_2:60399435-60399454 | None:intergenic | 40.0% | |
| TGAGAGCAGAGAGACTAAAT+GGG | - | chr1_2:60399529-60399548 | Msa0081730:intron | 40.0% | |
| TAAATGGTGTTCCACCAACA+GGG | - | chr1_2:60399740-60399759 | Msa0081730:CDS | 40.0% | |
| AATGCTAATGAGTGCCCTTA+GGG | + | chr1_2:60400321-60400340 | None:intergenic | 40.0% | |
| AAATGCTAATGAGTGCCCTT+AGG | + | chr1_2:60400322-60400341 | None:intergenic | 40.0% | |
| AAGATGCAGATGCAAAGTGA+CGG | + | chr1_2:60400467-60400486 | None:intergenic | 40.0% | |
| AATTACACAGCTGTGCTTGA+GGG | + | chr1_2:60400531-60400550 | None:intergenic | 40.0% | |
| TATGTAGAAATGGACCAAGG+AGG | - | chr1_2:60400665-60400684 | Msa0081730:intron | 40.0% | |
| !! | AACTGTTTGACTTGTGTGAG+AGG | - | chr1_2:60400697-60400716 | Msa0081730:intron | 40.0% |
| CTTCAACAGTTCGAGATGAA+GGG | + | chr1_2:60400758-60400777 | None:intergenic | 40.0% | |
| TCTTCAACAGTTCGAGATGA+AGG | + | chr1_2:60400759-60400778 | None:intergenic | 40.0% | |
| GCAACATCCTAATGCTGAAA+AGG | + | chr1_2:60401093-60401112 | None:intergenic | 40.0% | |
| TTATTCTCCCTCCTTAATGC+AGG | - | chr1_2:60401130-60401149 | Msa0081730:intron | 40.0% | |
| TATGGTTCCTGCATTAAGGA+GGG | + | chr1_2:60401140-60401159 | None:intergenic | 40.0% | |
| ATATGGTTCCTGCATTAAGG+AGG | + | chr1_2:60401141-60401160 | None:intergenic | 40.0% | |
| GGAACCATATAACGTTTCAC+AGG | - | chr1_2:60401151-60401170 | Msa0081730:intron | 40.0% | |
| ! | CTTTGTTTGAGAGAGGATCA+GGG | + | chr1_2:60401201-60401220 | None:intergenic | 40.0% |
| !! | CTTGTTGCTTTGTTTGAGAG+AGG | + | chr1_2:60401208-60401227 | None:intergenic | 40.0% |
| TGAATTACGCATAACGACCA+AGG | - | chr1_2:60401385-60401404 | Msa0081730:intron | 40.0% | |
| ! | AGTATTTGAGGTTCACTAGC+AGG | + | chr1_2:60401522-60401541 | None:intergenic | 40.0% |
| !! | TTTTTATTTGTTCAGGGGCC+TGG | - | chr1_2:60401604-60401623 | Msa0081730:intron | 40.0% |
| !! | TTTTATTTGTTCAGGGGCCT+GGG | - | chr1_2:60401605-60401624 | Msa0081730:intron | 40.0% |
| CACAGGTTCATCCAAAGTTT+GGG | + | chr1_2:60401751-60401770 | None:intergenic | 40.0% | |
| ACACAGGTTCATCCAAAGTT+TGG | + | chr1_2:60401752-60401771 | None:intergenic | 40.0% | |
| AACTTTGGATGAACCTGTGT+CGG | - | chr1_2:60401752-60401771 | Msa0081730:intron | 40.0% | |
| ATATCACTAATCACCGACAC+AGG | + | chr1_2:60401768-60401787 | None:intergenic | 40.0% | |
| TGTCGGTGATTAGTGATATC+TGG | - | chr1_2:60401769-60401788 | Msa0081730:intron | 40.0% | |
| ! | TGAGTTGGATGTTGCTTCAA+AGG | - | chr1_2:60401828-60401847 | Msa0081730:intron | 40.0% |
| TTGTGCAAACGTTACAGAGA+GGG | - | chr1_2:60401852-60401871 | Msa0081730:intron | 40.0% | |
| TGATGGAGATACAGTTTCAC+CGG | + | chr1_2:60401884-60401903 | None:intergenic | 40.0% | |
| GGTGGAAGTTCTGTATTTGA+TGG | + | chr1_2:60401901-60401920 | None:intergenic | 40.0% | |
| TTAACTTACCATGCGAAGAG+AGG | + | chr1_2:60401971-60401990 | None:intergenic | 40.0% | |
| AGAGACATCGGGTGAATAAT+TGG | + | chr1_2:60402005-60402024 | None:intergenic | 40.0% | |
| GTCAACAGAAAAGAGACATC+GGG | + | chr1_2:60402016-60402035 | None:intergenic | 40.0% | |
| ! | TCTTTCTCTTTTTGTGCTGG+GGG | + | chr1_2:60402074-60402093 | None:intergenic | 40.0% |
| AACCTATGCACTTGGACAAA+TGG | - | chr1_2:60402313-60402332 | Msa0081730:intron | 40.0% | |
| ! | ACGTGTTGATCAAACTTTGC+TGG | - | chr1_2:60402376-60402395 | Msa0081730:intron | 40.0% |
| GATCAAACTTTGCTGGAACT+TGG | - | chr1_2:60402383-60402402 | Msa0081730:intron | 40.0% | |
| TCAAACTTTGCTGGAACTTG+GGG | - | chr1_2:60402385-60402404 | Msa0081730:intron | 40.0% | |
| !! | ATTTTAACCCTCCTGTTCCT+AGG | - | chr1_2:60402592-60402611 | Msa0081730:intron | 40.0% |
| ! | TTTTAACCCTCCTGTTCCTA+GGG | - | chr1_2:60402593-60402612 | Msa0081730:intron | 40.0% |
| TCAGTTAAGGACGAAACGTT+CGG | + | chr1_2:60402708-60402727 | None:intergenic | 40.0% | |
| CTCAACCACTTGGTTTACTT+TGG | - | chr1_2:60402747-60402766 | Msa0081730:intron | 40.0% | |
| CAACCACTTGGTTTACTTTG+GGG | - | chr1_2:60402749-60402768 | Msa0081730:intron | 40.0% | |
| AAACCCCAAAGTAAACCAAG+TGG | + | chr1_2:60402755-60402774 | None:intergenic | 40.0% | |
| !! | ACTTGGTTTACTTTGGGGTT+TGG | - | chr1_2:60402754-60402773 | Msa0081730:intron | 40.0% |
| !!! | AGCTCTTTTAGAGCTTGACT+TGG | - | chr1_2:60402830-60402849 | Msa0081730:intron | 40.0% |
| TCAAACATAAATGGCTCGTG+TGG | - | chr1_2:60403005-60403024 | Msa0081730:intron | 40.0% | |
| TTATGAACACATACTGAGCC+AGG | + | chr1_2:60403212-60403231 | None:intergenic | 40.0% | |
| TTTGCTAGGGTGATTGGAAT+TGG | + | chr1_2:60403356-60403375 | None:intergenic | 40.0% | |
| ! | AGGTATTTTGCTAGGGTGAT+TGG | + | chr1_2:60403362-60403381 | None:intergenic | 40.0% |
| ! | GAAGTGCAGGTATTTTGCTA+GGG | + | chr1_2:60403369-60403388 | None:intergenic | 40.0% |
| ! | TGCAGGTCAATTTGAAACCA+AGG | - | chr1_2:60403464-60403483 | Msa0081730:intron | 40.0% |
| ! | GCAGGTCAATTTGAAACCAA+GGG | - | chr1_2:60403465-60403484 | Msa0081730:intron | 40.0% |
| ! | TCTGCACAAACAGCTTTTGT+TGG | + | chr1_2:60403493-60403512 | None:intergenic | 40.0% |
| !! | CTGTTTCTGAAGATTCAGCA+AGG | + | chr1_2:60403545-60403564 | None:intergenic | 40.0% |
| CTTGCTGAATCTTCAGAAAC+AGG | - | chr1_2:60403543-60403562 | Msa0081730:intron | 40.0% | |
| AGGATTACCAACACCAACAT+TGG | - | chr1_2:60403616-60403635 | Msa0081730:intron | 40.0% | |
| GAACAAACCAATGTTGGTGT+TGG | + | chr1_2:60403626-60403645 | None:intergenic | 40.0% | |
| GTTTCAGCTGCAAAATAAGG+AGG | - | chr1_2:60403676-60403695 | Msa0081730:intron | 40.0% | |
| ! | GAAGGTTCATCTTTTCGTGA+CGG | - | chr1_2:60403701-60403720 | Msa0081730:intron | 40.0% |
| ! | AAGGTTCATCTTTTCGTGAC+GGG | - | chr1_2:60403702-60403721 | Msa0081730:intron | 40.0% |
| GTTCCAGATAACACAAGTTC+TGG | - | chr1_2:60403935-60403954 | Msa0081730:intron | 40.0% | |
| TCCAGATAACACAAGTTCTG+GGG | - | chr1_2:60403937-60403956 | Msa0081730:intron | 40.0% | |
| CTTGGAGAAATTCAGATAGC+AGG | + | chr1_2:60403989-60404008 | None:intergenic | 40.0% | |
| ! | CATGCAATGAACTGGTTTCA+GGG | - | chr1_2:60404046-60404065 | Msa0081730:five_prime_UTR | 40.0% |
| ! | ATGCAATGAACTGGTTTCAG+GGG | - | chr1_2:60404047-60404066 | Msa0081730:five_prime_UTR | 40.0% |
| CAGGGGAAAGAATTGGTAAA+AGG | - | chr1_2:60404064-60404083 | Msa0081730:five_prime_UTR | 40.0% | |
| ! | TAAAAGGGATCAAAAGCGCA+AGG | - | chr1_2:60404080-60404099 | Msa0081730:five_prime_UTR | 40.0% |
| ATTCTTCTCCTGAAGTGGGA+AGG | + | chr1_2:60397124-60397143 | None:intergenic | 45.0% | |
| TCAGGAGAAGAATTCTAGCG+AGG | - | chr1_2:60397131-60397150 | Msa0081730:intron | 45.0% | |
| TAGGTGTATGCACTTACTGG+TGG | - | chr1_2:60397245-60397264 | Msa0081730:intron | 45.0% | |
| !! | AGCACAACTGGTTTGAGGTA+AGG | - | chr1_2:60397436-60397455 | Msa0081730:intron | 45.0% |
| !! | GCACAACTGGTTTGAGGTAA+GGG | - | chr1_2:60397437-60397456 | Msa0081730:intron | 45.0% |
| ! | TGGTTTGAGGTAAGGGATCA+GGG | - | chr1_2:60397444-60397463 | Msa0081730:intron | 45.0% |
| AGGGATCAGGGTTCAAAACT+TGG | - | chr1_2:60397456-60397475 | Msa0081730:intron | 45.0% | |
| TCTTTACTCTTGTGCCCCAT+AGG | - | chr1_2:60397690-60397709 | Msa0081730:intron | 45.0% | |
| CCAAACAGACTAAACCAGCA+AGG | + | chr1_2:60398414-60398433 | None:intergenic | 45.0% | |
| !! | CCTTGCTGGTTTAGTCTGTT+TGG | - | chr1_2:60398411-60398430 | Msa0081730:intron | 45.0% |
| ! | GGATCGACCTCTAGAAAACT+TGG | + | chr1_2:60398707-60398726 | None:intergenic | 45.0% |
| AACAATATGTTGTGTGGGCC+CGG | - | chr1_2:60398767-60398786 | Msa0081730:CDS | 45.0% | |
| GTTTAGGCTTCAAGCCCAAA+TGG | - | chr1_2:60398795-60398814 | Msa0081730:CDS | 45.0% | |
| CACCTCATACAAGAGCCATT+TGG | + | chr1_2:60398813-60398832 | None:intergenic | 45.0% | |
| TCGCCAAATGACCTGAATGA+GGG | + | chr1_2:60398924-60398943 | None:intergenic | 45.0% | |
| ATCGCCAAATGACCTGAATG+AGG | + | chr1_2:60398925-60398944 | None:intergenic | 45.0% | |
| TCATTCAGGTCATTTGGCGA+TGG | - | chr1_2:60398924-60398943 | Msa0081730:intron | 45.0% | |
| ! | GTTGTTGACTACCATGGAAG+AGG | + | chr1_2:60399072-60399091 | None:intergenic | 45.0% |
| ! | AATGCGGTTGTTGACTACCA+TGG | + | chr1_2:60399078-60399097 | None:intergenic | 45.0% |
| GGTGGTGTAAGGATATGCAT+CGG | + | chr1_2:60399101-60399120 | None:intergenic | 45.0% | |
| CAATCTGTTTGGGTGGTGTA+AGG | + | chr1_2:60399112-60399131 | None:intergenic | 45.0% | |
| CTTCATGCAATCTGTTTGGG+TGG | + | chr1_2:60399119-60399138 | None:intergenic | 45.0% | |
| GCACATTATTCTGGCAACCA+AGG | + | chr1_2:60399147-60399166 | None:intergenic | 45.0% | |
| AGTTGGGGTTCTTGTGAATC+TGG | + | chr1_2:60399169-60399188 | None:intergenic | 45.0% | |
| GCTAAACAATCAATGTGGGG+TGG | - | chr1_2:60399233-60399252 | Msa0081730:CDS | 45.0% | |
| ! | GCAAGAATCTTGTTTGCTGC+GGG | - | chr1_2:60399284-60399303 | Msa0081730:CDS | 45.0% |
| ! | CAAGAATCTTGTTTGCTGCG+GGG | - | chr1_2:60399285-60399304 | Msa0081730:CDS | 45.0% |
| ACAATTAAGCTCCAGCAGTG+AGG | - | chr1_2:60399444-60399463 | Msa0081730:intron | 45.0% | |
| CAATTAAGCTCCAGCAGTGA+GGG | - | chr1_2:60399445-60399464 | Msa0081730:intron | 45.0% | |
| AGTGAGGGTTGCGTGTTTAA+AGG | - | chr1_2:60399460-60399479 | Msa0081730:intron | 45.0% | |
| GTGAGGGTTGCGTGTTTAAA+GGG | - | chr1_2:60399461-60399480 | Msa0081730:intron | 45.0% | |
| CTGAGAGCAGAGAGACTAAA+TGG | - | chr1_2:60399528-60399547 | Msa0081730:intron | 45.0% | |
| GTAAATGGTGTTCCACCAAC+AGG | - | chr1_2:60399739-60399758 | Msa0081730:CDS | 45.0% | |
| AAATGGTGTTCCACCAACAG+GGG | - | chr1_2:60399741-60399760 | Msa0081730:intron | 45.0% | |
| AAAGAATAGTCCCCTGTTGG+TGG | + | chr1_2:60399754-60399773 | None:intergenic | 45.0% | |
| GCAAAAGAATAGTCCCCTGT+TGG | + | chr1_2:60399757-60399776 | None:intergenic | 45.0% | |
| TCAGTCTTTACCTTCATGCC+TGG | - | chr1_2:60399802-60399821 | Msa0081730:intron | 45.0% | |
| AAAATGCAGACCAGGCATGA+AGG | + | chr1_2:60399815-60399834 | None:intergenic | 45.0% | |
| CATAACAAGATACACGGACG+AGG | - | chr1_2:60399916-60399935 | Msa0081730:CDS | 45.0% | |
| GAATTACACAGCTGTGCTTG+AGG | + | chr1_2:60400532-60400551 | None:intergenic | 45.0% | |
| CAGTTGATCTGTTTCCTCCT+TGG | + | chr1_2:60400682-60400701 | None:intergenic | 45.0% | |
| TCCTGGCAATTAACATAGCC+CGG | + | chr1_2:60400937-60400956 | None:intergenic | 45.0% | |
| TGCCAGGAATCCATCTTCTA+CGG | - | chr1_2:60400949-60400968 | Msa0081730:intron | 45.0% | |
| ! | ATCCGTAGAAGATGGATTCC+TGG | + | chr1_2:60400954-60400973 | None:intergenic | 45.0% |
| ACTGCAACATCCGTAGAAGA+TGG | + | chr1_2:60400962-60400981 | None:intergenic | 45.0% | |
| ATCTTCTACGGATGTTGCAG+TGG | - | chr1_2:60400961-60400980 | Msa0081730:intron | 45.0% | |
| !! | GCTTTGTTTGAGAGAGGATC+AGG | + | chr1_2:60401202-60401221 | None:intergenic | 45.0% |
| ACAAGAGCGAAGAGATGAAG+AGG | - | chr1_2:60401223-60401242 | Msa0081730:intron | 45.0% | |
| AACATCCAACTCAGACTCTC+GGG | + | chr1_2:60401821-60401840 | None:intergenic | 45.0% | |
| CAACATCCAACTCAGACTCT+CGG | + | chr1_2:60401822-60401841 | None:intergenic | 45.0% | |
| CTTGTGCAAACGTTACAGAG+AGG | - | chr1_2:60401851-60401870 | Msa0081730:intron | 45.0% | |
| ATGGAGATACAGTTTCACCG+GGG | + | chr1_2:60401882-60401901 | None:intergenic | 45.0% | |
| GATGGAGATACAGTTTCACC+GGG | + | chr1_2:60401883-60401902 | None:intergenic | 45.0% | |
| ! | ATCATGGAAGGCACGACTAT+TGG | + | chr1_2:60401922-60401941 | None:intergenic | 45.0% |
| CACCATTTGTCCAAGTGCAT+AGG | + | chr1_2:60402318-60402337 | None:intergenic | 45.0% | |
| GACTACAACAGGGAGGATAA+AGG | + | chr1_2:60402448-60402467 | None:intergenic | 45.0% | |
| GCTGCTACATGACTACAACA+GGG | + | chr1_2:60402458-60402477 | None:intergenic | 45.0% | |
| AGCTGCTACATGACTACAAC+AGG | + | chr1_2:60402459-60402478 | None:intergenic | 45.0% | |
| TTTAACCCTCCTGTTCCTAG+GGG | - | chr1_2:60402594-60402613 | Msa0081730:intron | 45.0% | |
| ATGGTAATCCGGACTTAGCT+GGG | - | chr1_2:60402626-60402645 | Msa0081730:intron | 45.0% | |
| TTCCTGACTGGAACAATCCT+TGG | + | chr1_2:60402669-60402688 | None:intergenic | 45.0% | |
| TTCCAGTCAGGAATCGAACT+CGG | - | chr1_2:60402676-60402695 | Msa0081730:intron | 45.0% | |
| CAGTTAAGGACGAAACGTTC+GGG | + | chr1_2:60402707-60402726 | None:intergenic | 45.0% | |
| !!! | GGGGTTTGGTTTTGAGATTG+TGG | - | chr1_2:60402768-60402787 | Msa0081730:intron | 45.0% |
| !! | TAGAAGCCTAAGGAGGCATT+TGG | + | chr1_2:60403255-60403274 | None:intergenic | 45.0% |
| !! | GGAAGTGCAGGTATTTTGCT+AGG | + | chr1_2:60403370-60403389 | None:intergenic | 45.0% |
| ! | ACAGCTTTTGTTGGAACCCT+TGG | + | chr1_2:60403484-60403503 | None:intergenic | 45.0% |
| CTGCAAAATAAGGAGGCTGA+AGG | - | chr1_2:60403683-60403702 | Msa0081730:intron | 45.0% | |
| ! | CCAGATAACACAAGTTCTGG+GGG | - | chr1_2:60403938-60403957 | Msa0081730:intron | 45.0% |
| ! | GCATGCAATGAACTGGTTTC+AGG | - | chr1_2:60404045-60404064 | Msa0081730:five_prime_UTR | 45.0% |
| CTGGTTTCAGGGGAAAGAAT+TGG | - | chr1_2:60404057-60404076 | Msa0081730:five_prime_UTR | 45.0% | |
| !! | ATAAATAATACTTATTAAAA+GGG | + | chr1_2:60401262-60401281 | None:intergenic | 5.0% |
| !! | TATAAATAATACTTATTAAA+AGG | + | chr1_2:60401263-60401282 | None:intergenic | 5.0% |
| !! | TTTAATAAGTATTATTTATA+TGG | - | chr1_2:60401263-60401282 | Msa0081730:intron | 5.0% |
| !!! | TTCTTTTTAATTAAATTTTT+AGG | - | chr1_2:60403768-60403787 | Msa0081730:intron | 5.0% |
| ATTAGAGTCGGAAACGGGGT+TGG | - | chr1_2:60397411-60397430 | Msa0081730:CDS | 50.0% | |
| TTAGAGTCGGAAACGGGGTT+GGG | - | chr1_2:60397412-60397431 | Msa0081730:CDS | 50.0% | |
| !! | TGGGTAGCACAACTGGTTTG+AGG | - | chr1_2:60397431-60397450 | Msa0081730:intron | 50.0% |
| ! | CTGGTTTGAGGTAAGGGATC+AGG | - | chr1_2:60397443-60397462 | Msa0081730:intron | 50.0% |
| ! | AAGCCTTATCCCACTGAGTG+GGG | + | chr1_2:60398309-60398328 | None:intergenic | 50.0% |
| ! | CAAGCCTTATCCCACTGAGT+GGG | + | chr1_2:60398310-60398329 | None:intergenic | 50.0% |
| GCAAGGAACTTTCAAGCGAG+TGG | + | chr1_2:60398397-60398416 | None:intergenic | 50.0% | |
| CTCGCTTGAAAGTTCCTTGC+TGG | - | chr1_2:60398397-60398416 | Msa0081730:intron | 50.0% | |
| GCCCAAATGGCTCTTGTATG+AGG | - | chr1_2:60398808-60398827 | Msa0081730:intron | 50.0% | |
| CGATGCAGATATTGGGGGAA+CGG | - | chr1_2:60399204-60399223 | Msa0081730:CDS | 50.0% | |
| GATGCAGATATTGGGGGAAC+GGG | - | chr1_2:60399205-60399224 | Msa0081730:CDS | 50.0% | |
| AATCAATGTGGGGTGGGGAA+TGG | - | chr1_2:60399240-60399259 | Msa0081730:CDS | 50.0% | |
| TCGTCACATGTCTCTCAGCA+TGG | - | chr1_2:60399345-60399364 | Msa0081730:intron | 50.0% | |
| TCTCTCAGCATGGACTTGCA+TGG | - | chr1_2:60399355-60399374 | Msa0081730:intron | 50.0% | |
| CTCTCAGCATGGACTTGCAT+GGG | - | chr1_2:60399356-60399375 | Msa0081730:intron | 50.0% | |
| GGACTTGCATGGGAGAAGAT+TGG | - | chr1_2:60399366-60399385 | Msa0081730:intron | 50.0% | |
| ATGACAAGCCTCCATTGGCA+AGG | - | chr1_2:60399421-60399440 | Msa0081730:intron | 50.0% | |
| AGGGTTGCGTGTTTAAAGGG+AGG | - | chr1_2:60399464-60399483 | Msa0081730:intron | 50.0% | |
| AATGAGTGCCCTTAGGGCAT+TGG | + | chr1_2:60400315-60400334 | None:intergenic | 50.0% | |
| GCAGATGCAAAGTGACGGTT+AGG | + | chr1_2:60400462-60400481 | None:intergenic | 50.0% | |
| CCTGGCAATTAACATAGCCC+GGG | + | chr1_2:60400936-60400955 | None:intergenic | 50.0% | |
| TGCAGTGGATCCACTTGTTC+AGG | - | chr1_2:60400976-60400995 | Msa0081730:intron | 50.0% | |
| TGGATCCACTTGTTCAGGTG+TGG | - | chr1_2:60400981-60401000 | Msa0081730:intron | 50.0% | |
| ACGTTTCACAGGAGATGGAG+CGG | - | chr1_2:60401162-60401181 | Msa0081730:CDS | 50.0% | |
| AGATACAGTTTCACCGGGGT+TGG | + | chr1_2:60401878-60401897 | None:intergenic | 50.0% | |
| ! | ATGGAAGGCACGACTATTGG+TGG | + | chr1_2:60401919-60401938 | None:intergenic | 50.0% |
| TACCATAGCCTCTCTTCGCA+TGG | - | chr1_2:60401960-60401979 | Msa0081730:intron | 50.0% | |
| TACCATGCGAAGAGAGGCTA+TGG | + | chr1_2:60401965-60401984 | None:intergenic | 50.0% | |
| ! | TCTTTTTGTGCTGGGGGAAC+AGG | + | chr1_2:60402068-60402087 | None:intergenic | 50.0% |
| CAATCTGCAAGCTCATCAGC+TGG | - | chr1_2:60402338-60402357 | Msa0081730:intron | 50.0% | |
| CAAGCTCATCAGCTGGACTT+CGG | - | chr1_2:60402345-60402364 | Msa0081730:intron | 50.0% | |
| GCTACATGACTACAACAGGG+AGG | + | chr1_2:60402455-60402474 | None:intergenic | 50.0% | |
| CAGCTAAGTCCGGATTACCA+TGG | + | chr1_2:60402627-60402646 | None:intergenic | 50.0% | |
| CATGGTAATCCGGACTTAGC+TGG | - | chr1_2:60402625-60402644 | Msa0081730:intron | 50.0% | |
| ACTTACCTCCCAGCTAAGTC+CGG | + | chr1_2:60402637-60402656 | None:intergenic | 50.0% | |
| GCTGGGAGGTAAGTAAAGTC+CGG | - | chr1_2:60402643-60402662 | Msa0081730:intron | 50.0% | |
| AGGTAAGTAAAGTCCGGCCA+AGG | - | chr1_2:60402649-60402668 | Msa0081730:intron | 50.0% | |
| TGACTGGAACAATCCTTGGC+CGG | + | chr1_2:60402665-60402684 | None:intergenic | 50.0% | |
| TCCAGTCAGGAATCGAACTC+GGG | - | chr1_2:60402677-60402696 | Msa0081730:intron | 50.0% | |
| ACCACTTGAGCTCAACCACT+TGG | - | chr1_2:60402737-60402756 | Msa0081730:intron | 50.0% | |
| ACCAAGTGGTTGAGCTCAAG+TGG | + | chr1_2:60402741-60402760 | None:intergenic | 50.0% | |
| GCTCTTCCAAATGCCTCCTT+AGG | - | chr1_2:60403246-60403265 | Msa0081730:intron | 50.0% | |
| CGAAACAACGGGAACACCAA+AGG | - | chr1_2:60403733-60403752 | Msa0081730:intron | 50.0% | |
| TTTGCATCGAGGCGGAAATC+AGG | - | chr1_2:60403901-60403920 | Msa0081730:intron | 50.0% | |
| CCCCCAGAACTTGTGTTATC+TGG | + | chr1_2:60403941-60403960 | None:intergenic | 50.0% | |
| ! | GGGATCAAAAGCGCAAGGTA+CGG | - | chr1_2:60404085-60404104 | Msa0081730:five_prime_UTR | 50.0% |
| CTTATCCCACTGAGTGGGGT+CGG | + | chr1_2:60398305-60398324 | None:intergenic | 55.0% | |
| ! | CCAAGCCTTATCCCACTGAG+TGG | + | chr1_2:60398311-60398330 | None:intergenic | 55.0% |
| CCACTCAGTGGGATAAGGCT+TGG | - | chr1_2:60398308-60398327 | Msa0081730:intron | 55.0% | |
| TGTGGGCCCGGACATTGTTT+AGG | - | chr1_2:60398779-60398798 | Msa0081730:CDS | 55.0% | |
| ! | TGTGGGGTGGGGAATGGATT+TGG | - | chr1_2:60399246-60399265 | Msa0081730:CDS | 55.0% |
| AAACACGCAACCCTCACTGC+TGG | + | chr1_2:60399458-60399477 | None:intergenic | 55.0% | |
| GTCCTTGCCATGCAGTATCC+CGG | - | chr1_2:60400915-60400934 | Msa0081730:intron | 55.0% | |
| TCCTTGCCATGCAGTATCCC+GGG | - | chr1_2:60400916-60400935 | Msa0081730:intron | 55.0% | |
| ACATAGCCCGGGATACTGCA+TGG | + | chr1_2:60400925-60400944 | None:intergenic | 55.0% | |
| CCCGGGCTATGTTAATTGCC+AGG | - | chr1_2:60400933-60400952 | Msa0081730:intron | 55.0% | |
| GTCGACCACACCTGAACAAG+TGG | + | chr1_2:60400989-60401008 | None:intergenic | 55.0% | |
| ! | TTTTGTGCTGGGGGAACAGG+TGG | + | chr1_2:60402065-60402084 | None:intergenic | 55.0% |
| CCTTTCCCCTAGGAACAGGA+GGG | + | chr1_2:60402602-60402621 | None:intergenic | 55.0% | |
| CCTCCTGTTCCTAGGGGAAA+GGG | - | chr1_2:60402600-60402619 | Msa0081730:intron | 55.0% | |
| CTCCTGTTCCTAGGGGAAAG+GGG | - | chr1_2:60402601-60402620 | Msa0081730:intron | 55.0% | |
| GGAAAGGGGCCATGGTAATC+CGG | - | chr1_2:60402615-60402634 | Msa0081730:intron | 55.0% | |
| GTAATCCGGACTTAGCTGGG+AGG | - | chr1_2:60402629-60402648 | Msa0081730:intron | 55.0% | |
| GGCCAAGGATTGTTCCAGTC+AGG | - | chr1_2:60402664-60402683 | Msa0081730:intron | 55.0% | |
| ACCCGAGTTCGATTCCTGAC+TGG | + | chr1_2:60402681-60402700 | None:intergenic | 55.0% | |
| CGGGTCACACTGCGAAACAA+CGG | - | chr1_2:60403721-60403740 | Msa0081730:intron | 55.0% | |
| GGGTCACACTGCGAAACAAC+GGG | - | chr1_2:60403722-60403741 | Msa0081730:intron | 55.0% | |
| ACGGGGTTGGGTAGCACAAC+TGG | - | chr1_2:60397424-60397443 | Msa0081730:intron | 60.0% | |
| CGACCCCACTCAGTGGGATA+AGG | - | chr1_2:60398303-60398322 | Msa0081730:intron | 60.0% | |
| GGTTGCCCGAGAGTCTGAGT+TGG | - | chr1_2:60401813-60401832 | Msa0081730:intron | 60.0% | |
| GTTACAGAGAGGGCCAACCC+CGG | - | chr1_2:60401862-60401881 | Msa0081730:intron | 60.0% | |
| GGAACAGGTGGAGATGGGGA+AGG | + | chr1_2:60402053-60402072 | None:intergenic | 60.0% | |
| TGGGGGAACAGGTGGAGATG+GGG | + | chr1_2:60402057-60402076 | None:intergenic | 60.0% | |
| CTGGGGGAACAGGTGGAGAT+GGG | + | chr1_2:60402058-60402077 | None:intergenic | 60.0% | |
| CCCTCCTGTTCCTAGGGGAA+AGG | - | chr1_2:60402599-60402618 | Msa0081730:intron | 60.0% | |
| CCCTTTCCCCTAGGAACAGG+AGG | + | chr1_2:60402603-60402622 | None:intergenic | 60.0% | |
| TTCCTAGGGGAAAGGGGCCA+TGG | - | chr1_2:60402607-60402626 | Msa0081730:intron | 60.0% | |
| TACCATGGCCCCTTTCCCCT+AGG | + | chr1_2:60402612-60402631 | None:intergenic | 60.0% | |
| TGCCGACAGCGTTTGCATCG+AGG | - | chr1_2:60403890-60403909 | Msa0081730:intron | 60.0% | |
| CGCCTCGATGCAAACGCTGT+CGG | + | chr1_2:60403895-60403914 | None:intergenic | 60.0% | |
| CGACAGCGTTTGCATCGAGG+CGG | - | chr1_2:60403893-60403912 | Msa0081730:intron | 60.0% | |
| ACTGAGTGGGGTCGGCTGCA+TGG | + | chr1_2:60398297-60398316 | None:intergenic | 65.0% | |
| ATGCAGCCGACCCCACTCAG+TGG | - | chr1_2:60398296-60398315 | Msa0081730:intron | 65.0% | |
| TGCAGCCGACCCCACTCAGT+GGG | - | chr1_2:60398297-60398316 | Msa0081730:intron | 65.0% | |
| GCCCGGGATACTGCATGGCA+AGG | + | chr1_2:60400920-60400939 | None:intergenic | 65.0% | |
| GCTGGGGGAACAGGTGGAGA+TGG | + | chr1_2:60402059-60402078 | None:intergenic | 65.0% | |
| GGCCCCTTTCCCCTAGGAAC+AGG | + | chr1_2:60402606-60402625 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 60396942 | 60404176 | 60396942 | ID=Msa0081730;Name=Msa0081730 |
| chr1_2 | mRNA | 60396942 | 60404176 | 60396942 | ID=Msa0081730-mRNA-1;Parent=Msa0081730;Name=Msa0081730-mRNA-1;_AED=0.16;_eAED=0.16;_QI=139|0.78|0.8|1|0.85|0.86|15|0|399 |
| chr1_2 | exon | 60396942 | 60396980 | 60396942 | ID=Msa0081730-mRNA-1:exon:19726;Parent=Msa0081730-mRNA-1 |
| chr1_2 | exon | 60397017 | 60397051 | 60397017 | ID=Msa0081730-mRNA-1:exon:19725;Parent=Msa0081730-mRNA-1 |
| chr1_2 | exon | 60397159 | 60397219 | 60397159 | ID=Msa0081730-mRNA-1:exon:19724;Parent=Msa0081730-mRNA-1 |
| chr1_2 | exon | 60397364 | 60397435 | 60397364 | ID=Msa0081730-mRNA-1:exon:19723;Parent=Msa0081730-mRNA-1 |
| chr1_2 | exon | 60397554 | 60397649 | 60397554 | ID=Msa0081730-mRNA-1:exon:19722;Parent=Msa0081730-mRNA-1 |
| chr1_2 | exon | 60398712 | 60398822 | 60398712 | ID=Msa0081730-mRNA-1:exon:19721;Parent=Msa0081730-mRNA-1 |
| chr1_2 | exon | 60399137 | 60399304 | 60399137 | ID=Msa0081730-mRNA-1:exon:19720;Parent=Msa0081730-mRNA-1 |
| chr1_2 | exon | 60399712 | 60399759 | 60399712 | ID=Msa0081730-mRNA-1:exon:19719;Parent=Msa0081730-mRNA-1 |
| chr1_2 | exon | 60399874 | 60399966 | 60399874 | ID=Msa0081730-mRNA-1:exon:19718;Parent=Msa0081730-mRNA-1 |
| chr1_2 | exon | 60400121 | 60400188 | 60400121 | ID=Msa0081730-mRNA-1:exon:19717;Parent=Msa0081730-mRNA-1 |
| chr1_2 | exon | 60400317 | 60400446 | 60400317 | ID=Msa0081730-mRNA-1:exon:19716;Parent=Msa0081730-mRNA-1 |
| chr1_2 | exon | 60401154 | 60401210 | 60401154 | ID=Msa0081730-mRNA-1:exon:19715;Parent=Msa0081730-mRNA-1 |
| chr1_2 | exon | 60401329 | 60401391 | 60401329 | ID=Msa0081730-mRNA-1:exon:19714;Parent=Msa0081730-mRNA-1 |
| chr1_2 | exon | 60403784 | 60403870 | 60403784 | ID=Msa0081730-mRNA-1:exon:19713;Parent=Msa0081730-mRNA-1 |
| chr1_2 | exon | 60403966 | 60404176 | 60403966 | ID=Msa0081730-mRNA-1:exon:19712;Parent=Msa0081730-mRNA-1 |
| chr1_2 | five_prime_UTR | 60404038 | 60404176 | 60404038 | ID=Msa0081730-mRNA-1:five_prime_utr;Parent=Msa0081730-mRNA-1 |
| chr1_2 | CDS | 60403966 | 60404037 | 60403966 | ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1 |
| chr1_2 | CDS | 60403784 | 60403870 | 60403784 | ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1 |
| chr1_2 | CDS | 60401329 | 60401391 | 60401329 | ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1 |
| chr1_2 | CDS | 60401154 | 60401210 | 60401154 | ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1 |
| chr1_2 | CDS | 60400317 | 60400446 | 60400317 | ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1 |
| chr1_2 | CDS | 60400121 | 60400188 | 60400121 | ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1 |
| chr1_2 | CDS | 60399874 | 60399966 | 60399874 | ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1 |
| chr1_2 | CDS | 60399712 | 60399759 | 60399712 | ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1 |
| chr1_2 | CDS | 60399137 | 60399304 | 60399137 | ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1 |
| chr1_2 | CDS | 60398712 | 60398822 | 60398712 | ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1 |
| chr1_2 | CDS | 60397554 | 60397649 | 60397554 | ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1 |
| chr1_2 | CDS | 60397364 | 60397435 | 60397364 | ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1 |
| chr1_2 | CDS | 60397159 | 60397219 | 60397159 | ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1 |
| chr1_2 | CDS | 60397017 | 60397051 | 60397017 | ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1 |
| chr1_2 | CDS | 60396942 | 60396980 | 60396942 | ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
