AlfalfaGEDB | Msa0081730

M. sativa cultivar zhongmu-4 / Msa0081730

KEGG: K11324
GO: GO:0000122 GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0000981 GO:0001085 GO:0001103 GO:0003674 GO:0003700 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0034641 GO:0035267 GO:0036211 GO:0042306 GO:0042307 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045892 GO:0045934 GO:0046483 GO:0046822 GO:0046824 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051049 GO:0051050 GO:0051171 GO:0051172 GO:0051222 GO:0051223 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070491 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0090316 GO:0097346 GO:0140110 GO:1900180 GO:1900182 GO:1901360 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904949 GO:1904951 GO:1990234 GO:2000112 GO:2000113 GO:2001141
PFAM: PF16282.8

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0081730	sp\|Q8VZL6\|SWC4_ARATH	55.765	425	137	9	2	387	5	417	1.64e-150	436

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0081730	G7ICU6	89.120	432	14	2	1	399	1	432	0.0	771

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0081730	TF	MYB-related

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0081730	Msa0174050	0.812199	4.781741e-51	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0081730	MtrunA17_Chr1g0194351	91.422	408	14	1	1	387	1	408	0.0	753
Msa0081730	MtrunA17_Chr7g0270251	65.330	424	98	5	1	387	1	412	0.0	536

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0081730	AT2G47210.3	55.765	425	137	9	2	387	5	417	1.67e-151	436
Msa0081730	AT2G47210.1	55.765	425	137	9	2	387	5	417	1.67e-151	436
Msa0081730	AT2G47210.2	55.765	425	137	9	2	387	5	417	1.67e-151	436

Showing 1 to 3 of 3 entries

Previous1Next

Find 106 sgRNAs with CRISPR-Local

Find 505 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATAGTCCCCTGTTGG+TGG	0.572554	1_2:+60401345	None:intergenic
AAAGCCTCCTTCAGACAAAA+AGG	0.356170	1_2:-60403783	Msa0081730:intron
AAATCAAAATCATCAACTAA+AGG	0.456338	1_2:-60404119	Msa0081730:five_prime_UTR
AAATCAACTGCTGGCATAAG+AGG	0.458830	1_2:+60403821	None:intergenic
AAATGGTGTTCCACCAACAG+GGG	0.698079	1_2:-60401355	Msa0081730:CDS
AACAGAGACAAATCAACTGC+TGG	0.529934	1_2:+60403812	None:intergenic
AACATCCAACTCAGACTCTC+GGG	0.521677	1_2:+60399278	None:intergenic
AACCTATGCACTTGGACAAA+TGG	0.426661	1_2:-60398783	Msa0081730:CDS
AACTGTTTGACTTGTGTGAG+AGG	0.559257	1_2:-60400399	Msa0081730:CDS
AATCAAAATCATCAACTAAA+GGG	0.449696	1_2:-60404118	Msa0081730:five_prime_UTR

Showing 1 to 10 of 106 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GAATTCTTGATTAGAAAGAG+TGG	-	chr1_2:60397015-60397034	Msa0081730:intron	30.0%
ATAAACCCTAGATATTTCCA+TGG	-	chr1_2:60397062-60397081	Msa0081730:intron	30.0%
ATGGATGTGAAAAATATCCT+TGG	-	chr1_2:60397081-60397100	Msa0081730:intron	30.0%
AACAAAATTAGAGTCGGAAA+CGG	-	chr1_2:60397405-60397424	Msa0081730:CDS	30.0%
CATATAAAAAAAACAAGGGC+CGG	-	chr1_2:60397514-60397533	Msa0081730:intron	30.0%
GATATACAACATGTCAAGTT+TGG	-	chr1_2:60397587-60397606	Msa0081730:CDS	30.0%
AACAGAATCTATATCCTATG+GGG	+	chr1_2:60397707-60397726	None:intergenic	30.0%
CAAACAGAATCTATATCCTA+TGG	+	chr1_2:60397709-60397728	None:intergenic	30.0%
CATAGGATATAGATTCTGTT+TGG	-	chr1_2:60397707-60397726	Msa0081730:intron	30.0%
TTCATTGAATAACAGGTATC+TGG	+	chr1_2:60397995-60398014	None:intergenic	30.0%

Showing 1 to 10 of 505 entries

Previous1 2 3 4 5…51Next

Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	60396942	60404176	60396942	ID=Msa0081730;Name=Msa0081730
chr1_2	mRNA	60396942	60404176	60396942	ID=Msa0081730-mRNA-1;Parent=Msa0081730;Name=Msa0081730-mRNA-1;_AED=0.16;_eAED=0.16;_QI=139\|0.78\|0.8\|1\|0.85\|0.86\|15\|0\|399
chr1_2	exon	60396942	60396980	60396942	ID=Msa0081730-mRNA-1:exon:19726;Parent=Msa0081730-mRNA-1
chr1_2	exon	60397017	60397051	60397017	ID=Msa0081730-mRNA-1:exon:19725;Parent=Msa0081730-mRNA-1
chr1_2	exon	60397159	60397219	60397159	ID=Msa0081730-mRNA-1:exon:19724;Parent=Msa0081730-mRNA-1
chr1_2	exon	60397364	60397435	60397364	ID=Msa0081730-mRNA-1:exon:19723;Parent=Msa0081730-mRNA-1
chr1_2	exon	60397554	60397649	60397554	ID=Msa0081730-mRNA-1:exon:19722;Parent=Msa0081730-mRNA-1
chr1_2	exon	60398712	60398822	60398712	ID=Msa0081730-mRNA-1:exon:19721;Parent=Msa0081730-mRNA-1
chr1_2	exon	60399137	60399304	60399137	ID=Msa0081730-mRNA-1:exon:19720;Parent=Msa0081730-mRNA-1
chr1_2	exon	60399712	60399759	60399712	ID=Msa0081730-mRNA-1:exon:19719;Parent=Msa0081730-mRNA-1
chr1_2	exon	60399874	60399966	60399874	ID=Msa0081730-mRNA-1:exon:19718;Parent=Msa0081730-mRNA-1
chr1_2	exon	60400121	60400188	60400121	ID=Msa0081730-mRNA-1:exon:19717;Parent=Msa0081730-mRNA-1
chr1_2	exon	60400317	60400446	60400317	ID=Msa0081730-mRNA-1:exon:19716;Parent=Msa0081730-mRNA-1
chr1_2	exon	60401154	60401210	60401154	ID=Msa0081730-mRNA-1:exon:19715;Parent=Msa0081730-mRNA-1
chr1_2	exon	60401329	60401391	60401329	ID=Msa0081730-mRNA-1:exon:19714;Parent=Msa0081730-mRNA-1
chr1_2	exon	60403784	60403870	60403784	ID=Msa0081730-mRNA-1:exon:19713;Parent=Msa0081730-mRNA-1
chr1_2	exon	60403966	60404176	60403966	ID=Msa0081730-mRNA-1:exon:19712;Parent=Msa0081730-mRNA-1
chr1_2	five_prime_UTR	60404038	60404176	60404038	ID=Msa0081730-mRNA-1:five_prime_utr;Parent=Msa0081730-mRNA-1
chr1_2	CDS	60403966	60404037	60403966	ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1
chr1_2	CDS	60403784	60403870	60403784	ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1
chr1_2	CDS	60401329	60401391	60401329	ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1
chr1_2	CDS	60401154	60401210	60401154	ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1
chr1_2	CDS	60400317	60400446	60400317	ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1
chr1_2	CDS	60400121	60400188	60400121	ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1
chr1_2	CDS	60399874	60399966	60399874	ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1
chr1_2	CDS	60399712	60399759	60399712	ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1
chr1_2	CDS	60399137	60399304	60399137	ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1
chr1_2	CDS	60398712	60398822	60398712	ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1
chr1_2	CDS	60397554	60397649	60397554	ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1
chr1_2	CDS	60397364	60397435	60397364	ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1
chr1_2	CDS	60397159	60397219	60397159	ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1
chr1_2	CDS	60397017	60397051	60397017	ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1
chr1_2	CDS	60396942	60396980	60396942	ID=Msa0081730-mRNA-1:cds;Parent=Msa0081730-mRNA-1

Gene Sequence

>Msa0081730

ATGGATGTGAAAAATATCCTTGGAGGATTACCCAATTTTTCCTTCCCACTTCAGGAGAAGAATTCTAGCGAGGTGTATGCACTTACTGGTGGATTTGCACCTCTTATGCCAGCAGTTGATTTGTCTCTGTTGAGAAAAAAGCCTCCTTCAGACAAAAAGCAGATTCAAATTGTAAATGGTGTTCCACCAACAGGGGACTATTCTTTTGCCAAGTATAACAAGTCTGTTGACATAACAAGATACACGGACGAGGAGTATGAGAAATATTTGGCAAATCCTAAATGGACCAAGGAGGAAACAGATCAACTGTTTGACTTGTGTGAGAGGTTTAATCTCCGATTTATTGTTATAGCTGATAGGTTCCCTTCATCTCGAACTGTTGAAGAATTGAAGGATCGATATTATAGTGTATCCCGGGCTATGTTAATTGCCAGGAATCCATCTTCTACGGATGTTGCAGTGGATCCACTTGTTCAGGAACCATATAACGTTTCACAGGAGATGGAGCGGAAACGAGCTCAGTCCCTGATCCTCTCTCAAACAAAGCAACAAGAGCGAAGAGATGAAGAGGTGCTTGCCGAAGCAAAAAGAATTGCTGAATTACGCATAACGACCAAGGTTGCCCGAGAGTCTGAGTTGGATGTTGCTTCAAAGGCTTGTGCAAACGTTACAGAGAGGGCCAACCCCGGTGAAACTGTATCTCCATCAAATACAGAACTTCCACCAATAGTCGTGCCTTCCATGATATCGACAGATAATGCATCTACCATAGCCTCTCTTCGCATGCTTTATGTCTATTCAAGAACCTATGCACTTGGACAAATGGTGCAATCTGCAAGCTCATCAGCTGGACTTCGGACTATCAAACGTGTTGATCAAACTTTGCTGGAACTTGGGGTCAATTTGAAACCAAGGGTTCCAACAAAAGCTGTTTGTGCAGAGCATCTAGAACTAAGAAATGAAATACTAACCTTGCTGAATCTTCAGAAACAGCTGCAAAATAAGGAGGCTGAAGGTTCATCTTTTCGTGACGGGTCACACTGCGAAACAACGGGAACACCAAAGCGTTTGCATCGAGGCGGAAATCAGGATCTGACATTTGTTCCAGATAACACAAGTTCTGGGGGGGAAAGAATTGGTAAAAGGGATCAAAAGCGCAAGTATTCTTTCTTGTTCTACATGCTTTTAGACCAATGCTAA

Protein sequence

>Msa0081730

MDVKNILGGLPNFSFPLQEKNSSEVYALTGGFAPLMPAVDLSLLRKKPPSDKKQIQIVNGVPPTGDYSFAKYNKSVDITRYTDEEYEKYLANPKWTKEETDQLFDLCERFNLRFIVIADRFPSSRTVEELKDRYYSVSRAMLIARNPSSTDVAVDPLVQEPYNVSQEMERKRAQSLILSQTKQQERRDEEVLAEAKRIAELRITTKVARESELDVASKACANVTERANPGETVSPSNTELPPIVVPSMISTDNASTIASLRMLYVYSRTYALGQMVQSASSSAGLRTIKRVDQTLLELGVNLKPRVPTKAVCAEHLELRNEILTLLNLQKQLQNKEAEGSSFRDGSHCETTGTPKRLHRGGNQDLTFVPDNTSSGGERIGKRDQKRKYSFLFYMLLDQC*