AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0174050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0174050 MtrunA17_Chr1g0194351 91.436 397 13 1 1 376 1 397 0.0 734
Msa0174050 MtrunA17_Chr7g0270251 64.891 413 96 5 1 376 1 401 0.0 516
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0174050 AT2G47210.3 55.556 414 133 9 2 376 5 406 4.06e-147 425
Msa0174050 AT2G47210.1 55.556 414 133 9 2 376 5 406 4.06e-147 425
Msa0174050 AT2G47210.2 55.556 414 133 9 2 376 5 406 4.06e-147 425

Find 135 sgRNAs with CRISPR-Local

Find 562 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAAGCATCTGCAAATTTC+TGG 0.180541 1_4:-59552464 None:intergenic
ATTAGGATTTGTATATAATT+AGG 0.201527 1_4:+59552422 Msa0174050:three_prime_UTR
ATATATAGTTTCGGGCTTAA+AGG 0.229525 1_4:-59552502 None:intergenic
CAGCAGATTCAAATTGTAAA+TGG 0.262132 1_4:+59547430 Msa0174050:intron
ATATATAAGGATGTAGAAAT+TGG 0.273437 1_4:+59552519 Msa0174050:three_prime_UTR
TCACATCCATGGAAATATCT+AGG 0.283658 1_4:-59544776 None:intergenic
ACATCCTTATATATAGTTTC+GGG 0.289226 1_4:-59552510 None:intergenic
TACATCCTTATATATAGTTT+CGG 0.295613 1_4:-59552511 None:intergenic
GTTCCAGATAACACAAGTTC+TGG 0.296830 1_4:+59551641 Msa0174050:CDS
TTATAGGTGTATGCACTTAC+TGG 0.300360 1_4:+59544946 Msa0174050:intron
TTTGTTTCAGCTGCAAAATA+AGG 0.323047 1_4:+59551379 Msa0174050:intron
CGAGGAGTATGAGAAATATT+TGG 0.337332 1_4:+59547640 Msa0174050:CDS
ATCAAACTTTGCTGGAACTT+GGG 0.341194 1_4:+59550090 Msa0174050:CDS
ATCTCCTGTGAAACGTTATA+TGG 0.347225 1_4:-59548861 None:intergenic
TAAGCCCGAAACTATATATA+AGG 0.349686 1_4:+59552506 Msa0174050:three_prime_UTR
CAGTTGATCTGTTTCCTCCT+TGG 0.354649 1_4:-59548385 None:intergenic
AAAGCCTCCTTCAGACAAAA+AGG 0.356170 1_4:+59545017 Msa0174050:CDS
ACGTGTTGATCAAACTTTGC+TGG 0.359797 1_4:+59550082 Msa0174050:CDS
ATTTGTATATAATTAGGATT+AGG 0.361154 1_4:+59552428 Msa0174050:three_prime_UTR
AGGGACCAACCAAGCTCATT+AGG 0.363260 1_4:+59552405 Msa0174050:three_prime_UTR
TGCAGTGGATCCACTTGTTC+AGG 0.368298 1_4:+59548682 Msa0174050:CDS
GATCAAACTTTGCTGGAACT+TGG 0.378095 1_4:+59550089 Msa0174050:CDS
GTAAATGGTGTTCCACCAAC+AGG 0.383590 1_4:+59547445 Msa0174050:CDS
TGCATTTACCTTGTTATACT+TGG 0.387949 1_4:-59547482 None:intergenic
ATCATGGAAGGCACGACTAT+TGG 0.390462 1_4:-59549625 None:intergenic
GCTTTGTTTGAGAGAGGATC+AGG 0.395914 1_4:-59548905 None:intergenic
ATCCGTAGAAGATGGATTCC+TGG 0.400770 1_4:-59548657 None:intergenic
TCTTCAACAGTTCGAGATGA+AGG 0.406013 1_4:-59548462 None:intergenic
GGTCCCTAGCACCTGGTGGC+TGG 0.406645 1_4:-59552389 None:intergenic
TACAAATCGCAACACCATTC+CGG 0.417236 1_4:-59552153 None:intergenic
CTTGCTGAATCTTCAGAAAC+AGG 0.417237 1_4:+59551249 Msa0174050:CDS
GTCCTTGCCATGCAGTATCC+CGG 0.421755 1_4:+59548621 Msa0174050:intron
AACCTATGCACTTGGACAAA+TGG 0.426661 1_4:+59550019 Msa0174050:CDS
TGAGTTGGATGTTGCTTCAA+AGG 0.427293 1_4:+59549534 Msa0174050:CDS
TTCCAGATAACACAAGTTCT+GGG 0.430784 1_4:+59551642 Msa0174050:CDS
GATTTATTGTTATAGCTGAT+AGG 0.439661 1_4:+59548436 Msa0174050:CDS
TGCATTATCTGTCGATATCA+TGG 0.441207 1_4:-59549641 None:intergenic
TCGAACTGTTGAAGAATTGA+AGG 0.443297 1_4:+59548470 Msa0174050:CDS
TAAGGATGTAGAAATTGGTT+TGG 0.446548 1_4:+59552524 Msa0174050:three_prime_UTR
AATCAAAATCATCAACTAAA+GGG 0.449696 1_4:+59544686 Msa0174050:five_prime_UTR
TCCTGGCAATTAACATAGCC+CGG 0.451028 1_4:-59548640 None:intergenic
TATCAGCTATAACAATAAAT+CGG 0.454968 1_4:-59548434 None:intergenic
GCTTTCTGTTAGGTGGCAAC+CGG 0.455766 1_4:+59552134 Msa0174050:intron
AAATCAAAATCATCAACTAA+AGG 0.456338 1_4:+59544685 Msa0174050:five_prime_UTR
AAATCAACTGCTGGCATAAG+AGG 0.458830 1_4:-59544979 None:intergenic
CACATCCATGGAAATATCTA+GGG 0.465541 1_4:-59544775 None:intergenic
GTAAGGTCCGGTTCGAACCT+TGG 0.466464 1_4:+59544506 Msa0174050:five_prime_UTR
GGGTCACACTGCGAAACAAC+GGG 0.473685 1_4:+59551428 Msa0174050:CDS
TTTGCATCGAGGCGGAGATC+AGG 0.475049 1_4:+59551607 Msa0174050:CDS
ATTTGAAGATCTTCTTCAAT+CGG 0.477327 1_4:-59544666 None:intergenic
TATACAAATCCTAATGAGCT+TGG 0.482672 1_4:-59552414 None:intergenic
GACAATACATAATATATGTA+AGG 0.483404 1_4:+59544489 Msa0174050:five_prime_UTR
ATAAAGTTCACTTCCTCTGT+GGG 0.493810 1_4:-59552338 None:intergenic
ATGTAGAAATTGGTTTGGTA+AGG 0.497125 1_4:+59552529 Msa0174050:three_prime_UTR
CTTGTTGCTTTGTTTGAGAG+AGG 0.497997 1_4:-59548911 None:intergenic
CTGTTAGGTGGCAACCGGAA+TGG 0.501065 1_4:+59552139 Msa0174050:intron
CCCGGGCTATGTTAATTGCC+AGG 0.503662 1_4:+59548639 Msa0174050:CDS
GGTGGAAGTTCTGTATTTGA+TGG 0.504189 1_4:-59549604 None:intergenic
TGATGGAGATACAGTTTCAC+CGG 0.504548 1_4:-59549587 None:intergenic
ATGGAAGGCACGACTATTGG+TGG 0.505977 1_4:-59549622 None:intergenic
GATACCAGCCACCAGGTGCT+AGG 0.506076 1_4:+59552385 Msa0174050:three_prime_UTR
CAATCTGCAAGCTCATCAGC+TGG 0.509587 1_4:+59550044 Msa0174050:CDS
GTCGACCACACCTGAACAAG+TGG 0.512934 1_4:-59548692 None:intergenic
CAAATCCTAATGAGCTTGGT+TGG 0.514431 1_4:-59552410 None:intergenic
CTTGGTTGGTCCCTAGCACC+TGG 0.514527 1_4:-59552396 None:intergenic
CAACATCCAACTCAGACTCT+CGG 0.518492 1_4:-59549525 None:intergenic
AACATCCAACTCAGACTCTC+GGG 0.521677 1_4:-59549524 None:intergenic
TCAAACTTTGCTGGAACTTG+GGG 0.524390 1_4:+59550091 Msa0174050:CDS
AGATACAGTTTCACCGGGGT+TGG 0.525293 1_4:-59549581 None:intergenic
AGCAGCGAACTCAAAACTCC+TGG 0.527113 1_4:+59552214 Msa0174050:CDS
TTGAAGGATCGATATTATAG+TGG 0.527157 1_4:+59548486 Msa0174050:CDS
AACAGAGACAAATCAACTGC+TGG 0.529934 1_4:-59544988 None:intergenic
ATATAACGTTTCACAGGAGA+TGG 0.536143 1_4:+59548863 Msa0174050:CDS
TGCCAGGAATCCATCTTCTA+CGG 0.537155 1_4:+59548655 Msa0174050:CDS
TGCAGGTCAATTTGAAACCA+AGG 0.539590 1_4:+59551170 Msa0174050:intron
TACATAATATATGTAAGGTC+CGG 0.540076 1_4:+59544494 Msa0174050:five_prime_UTR
CTTCAACAGTTCGAGATGAA+GGG 0.541369 1_4:-59548461 None:intergenic
CTAGAATTCTTCTCCTGAAG+TGG 0.542194 1_4:-59544834 None:intergenic
ACTGCAACATCCGTAGAAGA+TGG 0.546115 1_4:-59548665 None:intergenic
CACCATTTGTCCAAGTGCAT+AGG 0.547944 1_4:-59550021 None:intergenic
ATAAACCCTAGATATTTCCA+TGG 0.551041 1_4:+59544770 Msa0174050:exon
TCCTTGCCATGCAGTATCCC+GGG 0.551210 1_4:+59548622 Msa0174050:intron
TACCATGCGAAGAGAGGCTA+TGG 0.556004 1_4:-59549668 None:intergenic
CAAGCTCATCAGCTGGACTT+CGG 0.556264 1_4:+59550051 Msa0174050:CDS
ACAAGAGCGAAGAGATGAAG+AGG 0.556809 1_4:+59548929 Msa0174050:CDS
AACTGTTTGACTTGTGTGAG+AGG 0.559257 1_4:+59548403 Msa0174050:CDS
TATTCAAGAACCTATGCACT+TGG 0.559755 1_4:+59550011 Msa0174050:CDS
TAGGTGTATGCACTTACTGG+TGG 0.572395 1_4:+59544949 Msa0174050:intron
AAAGAATAGTCCCCTGTTGG+TGG 0.572554 1_4:-59547457 None:intergenic
ATACCAGCCACCAGGTGCTA+GGG 0.573561 1_4:+59552386 Msa0174050:three_prime_UTR
ACTCCTGGCAGTTCTGATTG+TGG 0.575737 1_4:+59552229 Msa0174050:CDS
GCAGGTCAATTTGAAACCAA+GGG 0.576834 1_4:+59551171 Msa0174050:intron
TTAACTTACCATGCGAAGAG+AGG 0.578824 1_4:-59549674 None:intergenic
ACTGTGCTGTAACACTGTAA+TGG 0.581900 1_4:+59544611 Msa0174050:five_prime_UTR
GGAACCATATAACGTTTCAC+AGG 0.582270 1_4:+59548857 Msa0174050:intron
CTTTGTTTGAGAGAGGATCA+GGG 0.585863 1_4:-59548904 None:intergenic
GGTTGCCCGAGAGTCTGAGT+TGG 0.587360 1_4:+59549519 Msa0174050:intron
ATCTTCTACGGATGTTGCAG+TGG 0.587379 1_4:+59548667 Msa0174050:CDS
CGGGTCACACTGCGAAACAA+CGG 0.588101 1_4:+59551427 Msa0174050:CDS
TACCATAGCCTCTCTTCGCA+TGG 0.588204 1_4:+59549666 Msa0174050:CDS
AATAAAGTTCACTTCCTCTG+TGG 0.589152 1_4:-59552339 None:intergenic
GTTTCAGCTGCAAAATAAGG+AGG 0.600246 1_4:+59551382 Msa0174050:intron
ATTCTTCTCCTGAAGTGGGA+AGG 0.601079 1_4:-59544829 None:intergenic
CCTGGCAATTAACATAGCCC+GGG 0.603428 1_4:-59548639 None:intergenic
TAACCACAATCAGAACTGCC+AGG 0.606641 1_4:-59552232 None:intergenic
CGAAACAACGGGAACACCAA+AGG 0.608995 1_4:+59551439 Msa0174050:CDS
TTGTGCAAACGTTACAGAGA+GGG 0.610465 1_4:+59549558 Msa0174050:CDS
GCAAAAGAATAGTCCCCTGT+TGG 0.610779 1_4:-59547460 None:intergenic
TAAATGGTGTTCCACCAACA+GGG 0.611976 1_4:+59547446 Msa0174050:CDS
GATGGAGATACAGTTTCACC+GGG 0.612216 1_4:-59549586 None:intergenic
CTGCAAAATAAGGAGGCTGA+AGG 0.613211 1_4:+59551389 Msa0174050:CDS
TAGAATTCTTCTCCTGAAGT+GGG 0.615625 1_4:-59544833 None:intergenic
TCCAGATAACACAAGTTCTG+GGG 0.616535 1_4:+59551643 Msa0174050:CDS
TTATCTGTCGATATCATGGA+AGG 0.626460 1_4:-59549637 None:intergenic
TTAGAGTGATACCAGCCACC+AGG 0.626927 1_4:+59552378 Msa0174050:three_prime_UTR
GGTTGGTCCCTAGCACCTGG+TGG 0.629488 1_4:-59552393 None:intergenic
CTGTTTCTGAAGATTCAGCA+AGG 0.629529 1_4:-59551248 None:intergenic
CATAACAAGATACACGGACG+AGG 0.639523 1_4:+59547622 Msa0174050:CDS
GAATTCGTGATTAGAAAGAG+TGG 0.650216 1_4:+59544723 Msa0174050:five_prime_UTR
CAGTGCTACATGGAGCAATG+AGG 0.668897 1_4:+59552291 Msa0174050:three_prime_UTR
ACGTTTCACAGGAGATGGAG+CGG 0.669816 1_4:+59548868 Msa0174050:CDS
CCAGATAACACAAGTTCTGG+GGG 0.671324 1_4:+59551644 Msa0174050:CDS
TGCCGACAGCGTTTGCATCG+AGG 0.672897 1_4:+59551596 Msa0174050:intron
TCAGGAGAAGAATTCTAGCG+AGG 0.675024 1_4:+59544839 Msa0174050:CDS
GTTACAGAGAGGGCCAACCC+CGG 0.680256 1_4:+59549568 Msa0174050:CDS
TAAAGTTCACTTCCTCTGTG+GGG 0.681936 1_4:-59552337 None:intergenic
ATTTATGTAGAAATGGACCA+AGG 0.683713 1_4:+59548368 Msa0174050:intron
TGAATTACGCATAACGACCA+AGG 0.689788 1_4:+59549091 Msa0174050:CDS
AAATGGTGTTCCACCAACAG+GGG 0.698079 1_4:+59547447 Msa0174050:CDS
TGTTGACATAACAAGATACA+CGG 0.700844 1_4:+59547616 Msa0174050:CDS
CTTGTGCAAACGTTACAGAG+AGG 0.710038 1_4:+59549557 Msa0174050:CDS
CGACAGCGTTTGCATCGAGG+CGG 0.711723 1_4:+59551599 Msa0174050:intron
TATGTAGAAATGGACCAAGG+AGG 0.727348 1_4:+59548371 Msa0174050:intron
CATCAAATACATCCCCACAG+AGG 0.759825 1_4:+59552325 Msa0174050:three_prime_UTR
ATGGAGATACAGTTTCACCG+GGG 0.808137 1_4:-59549585 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTCAATAATTTTTC+TGG + chr1_4:59544912-59544931 Msa0174050:intron 10.0%
!!! TATTTTTTTTTTTTTCTTGT+TGG + chr1_4:59545040-59545059 Msa0174050:intron 10.0%
!!! ATTTTCATATAAAAAAAACA+AGG + chr1_4:59545216-59545235 Msa0174050:intron 10.0%
!!! TTTTCATATAAAAAAAACAA+GGG + chr1_4:59545217-59545236 Msa0174050:intron 10.0%
!! TAAACGAAAATTATTTAAAT+GGG - chr1_4:59545951-59545970 None:intergenic 10.0%
!! AAATTATATTTATGTAGAAA+TGG + chr1_4:59548361-59548380 Msa0174050:intron 10.0%
!! TAAATAATACTTATTAAAAG+GGG - chr1_4:59548967-59548986 None:intergenic 10.0%
!! ATGTTTAAATAAAATGAAAT+TGG - chr1_4:59549288-59549307 None:intergenic 10.0%
!! ATATTTATATTTCACAAATT+TGG - chr1_4:59549429-59549448 None:intergenic 10.0%
!! TGAAATAAAAAACGTTAAAT+TGG - chr1_4:59544902-59544921 None:intergenic 15.0%
!! GTAAACGAAAATTATTTAAA+TGG - chr1_4:59545952-59545971 None:intergenic 15.0%
!!! CTTTTCTTATTTAGAATAAT+GGG - chr1_4:59546444-59546463 None:intergenic 15.0%
!!! ACTTTTCTTATTTAGAATAA+TGG - chr1_4:59546445-59546464 None:intergenic 15.0%
!! AGTTATGAACAAAAAATATT+AGG + chr1_4:59547024-59547043 Msa0174050:intron 15.0%
!!! CAAATATAGAAATATTGTTT+TGG - chr1_4:59547989-59548008 None:intergenic 15.0%
!!! AAATAAACAACTTTTAAGTT+AGG - chr1_4:59548052-59548071 None:intergenic 15.0%
!! TCTACATAAATATAATTTCA+TGG - chr1_4:59548359-59548378 None:intergenic 15.0%
!! AAACTAAGAATAAAAGAAAA+TGG - chr1_4:59548556-59548575 None:intergenic 15.0%
!!! AACATTTTTTTTATTTGTTC+AGG + chr1_4:59549303-59549322 Msa0174050:intron 15.0%
!!! ACATTTTTTTTATTTGTTCA+GGG + chr1_4:59549304-59549323 Msa0174050:intron 15.0%
!!! TATTTGATTTTGTTTCTTTT+AGG + chr1_4:59549498-59549517 Msa0174050:intron 15.0%
!!! TACTAATGTCATTTTTTTAT+AGG + chr1_4:59551302-59551321 Msa0174050:intron 15.0%
!! ATTAGGATTTGTATATAATT+AGG + chr1_4:59552422-59552441 Msa0174050:three_prime_UTR 15.0%
!! ATTTGTATATAATTAGGATT+AGG + chr1_4:59552428-59552447 Msa0174050:three_prime_UTR 15.0%
!! GACAATACATAATATATGTA+AGG + chr1_4:59544489-59544508 Msa0174050:five_prime_UTR 20.0%
!! AAATCAAAATCATCAACTAA+AGG + chr1_4:59544685-59544704 Msa0174050:five_prime_UTR 20.0%
!! AATCAAAATCATCAACTAAA+GGG + chr1_4:59544686-59544705 Msa0174050:five_prime_UTR 20.0%
!!! AAGAAGATTGTAAATTTTTC+CGG - chr1_4:59545243-59545262 None:intergenic 20.0%
!!! TTTTTGCTTATAATAGTAAC+CGG - chr1_4:59545627-59545646 None:intergenic 20.0%
!!! TAAGCAAAAAAACACTTTTT+AGG + chr1_4:59545637-59545656 Msa0174050:intron 20.0%
!! TCATAAGAAGATACATTATT+AGG + chr1_4:59545840-59545859 Msa0174050:intron 20.0%
!! TAACTTAATAAGTTGTTCTT+TGG + chr1_4:59545915-59545934 Msa0174050:intron 20.0%
!!! TTTCAGTCAATAATTTGTTT+AGG - chr1_4:59546281-59546300 None:intergenic 20.0%
!!! AACAAATTATTGACTGAAAT+TGG + chr1_4:59546282-59546301 Msa0174050:intron 20.0%
!!! ACAAATTATTGACTGAAATT+GGG + chr1_4:59546283-59546302 Msa0174050:intron 20.0%
!! TTGATTCATTAATTGGAAAA+TGG + chr1_4:59547353-59547372 Msa0174050:intron 20.0%
!! TGATTCATTAATTGGAAAAT+GGG + chr1_4:59547354-59547373 Msa0174050:intron 20.0%
!! ATAGTTAGAATGTATATGAA+AGG + chr1_4:59547832-59547851 Msa0174050:intron 20.0%
!! TATCAGCTATAACAATAAAT+CGG - chr1_4:59548437-59548456 None:intergenic 20.0%
!! AGAGAAAATGAAGTAAATAT+AGG + chr1_4:59549011-59549030 Msa0174050:intron 20.0%
!! ATGAAGTAAATATAGGTATT+AGG + chr1_4:59549018-59549037 Msa0174050:intron 20.0%
!!! CATTTTTTTTATTTGTTCAG+GGG + chr1_4:59549305-59549324 Msa0174050:intron 20.0%
!! TCAAGAAATATAGAATAACA+AGG + chr1_4:59549806-59549825 Msa0174050:intron 20.0%
!! TTCTTTGTATTCTACATATT+TGG + chr1_4:59550829-59550848 Msa0174050:intron 20.0%
!!! ACTTCCTGATAATAATTTTA+AGG + chr1_4:59551120-59551139 Msa0174050:intron 20.0%
!! TTGACCTTAAAATTATTATC+AGG - chr1_4:59551127-59551146 None:intergenic 20.0%
!! AGAAAAAAAAATCTAACCTT+TGG - chr1_4:59551458-59551477 None:intergenic 20.0%
!!! TTTTTTCTGTCTTTTTGATT+GGG - chr1_4:59551972-59551991 None:intergenic 20.0%
!! TACATCCTTATATATAGTTT+CGG - chr1_4:59552514-59552533 None:intergenic 20.0%
!! ATATATAAGGATGTAGAAAT+TGG + chr1_4:59552519-59552538 Msa0174050:three_prime_UTR 20.0%
! TACATAATATATGTAAGGTC+CGG + chr1_4:59544494-59544513 Msa0174050:five_prime_UTR 25.0%
!!! CAAACTTTTTTTTTTGTCCA+AGG - chr1_4:59544526-59544545 None:intergenic 25.0%
! ATTTGAAGATCTTCTTCAAT+CGG - chr1_4:59544669-59544688 None:intergenic 25.0%
!! AAAAATACCTTTTTGTCTGA+AGG - chr1_4:59545027-59545046 None:intergenic 25.0%
!!! TTTTTTTTCTTGTTGGTTGT+TGG + chr1_4:59545047-59545066 Msa0174050:intron 25.0%
! TGTTTGAACAAAATTAGAGT+CGG + chr1_4:59545106-59545125 Msa0174050:intron 25.0%
! GGAAAAATTTACAATCTTCT+TGG + chr1_4:59545242-59545261 Msa0174050:intron 25.0%
! AAACAGAATCTATATCCTAT+GGG - chr1_4:59545415-59545434 None:intergenic 25.0%
!!! AAAAACACTTTTTAGGTTCA+TGG + chr1_4:59545644-59545663 Msa0174050:intron 25.0%
!!! TTTTAGGTTCATTGAATAAC+AGG - chr1_4:59545708-59545727 None:intergenic 25.0%
! TTATTCAATGAACCTAAAAG+TGG + chr1_4:59545709-59545728 Msa0174050:intron 25.0%
!!! AAAAACCAAAAACCACTTTT+AGG - chr1_4:59545724-59545743 None:intergenic 25.0%
! TAAAATAAGTCAATCCAAAC+TGG + chr1_4:59545816-59545835 Msa0174050:intron 25.0%
! ATTATTAGGAAGAAGAAAGA+AGG + chr1_4:59545854-59545873 Msa0174050:intron 25.0%
! TCTTAAAAGCTTAGGTTATT+AGG - chr1_4:59546348-59546367 None:intergenic 25.0%
! ATTGACTATCTTAAAAGCTT+AGG - chr1_4:59546356-59546375 None:intergenic 25.0%
! AAGATAGTCAATCAATGATA+TGG + chr1_4:59546364-59546383 Msa0174050:intron 25.0%
!! TTAGAATAATGGGATCAATA+AGG - chr1_4:59546434-59546453 None:intergenic 25.0%
! AATTTCAACAATATGTTGTG+TGG + chr1_4:59546467-59546486 Msa0174050:intron 25.0%
! ATTTCAACAATATGTTGTGT+GGG + chr1_4:59546468-59546487 Msa0174050:intron 25.0%
! CCAATTATTGTAAAAGCTTA+AGG - chr1_4:59546574-59546593 None:intergenic 25.0%
!! CCTTAAGCTTTTACAATAAT+TGG + chr1_4:59546571-59546590 Msa0174050:intron 25.0%
! ATTTATAACGATGCAGATAT+TGG + chr1_4:59546902-59546921 Msa0174050:intron 25.0%
! TTTATAACGATGCAGATATT+GGG + chr1_4:59546903-59546922 Msa0174050:intron 25.0%
! AAAATACACCGAAGATATTT+AGG + chr1_4:59547194-59547213 Msa0174050:intron 25.0%
! ATACCATACCTAAATATCTT+CGG - chr1_4:59547205-59547224 None:intergenic 25.0%
! GTATGCTTTGATTCATTAAT+TGG + chr1_4:59547346-59547365 Msa0174050:intron 25.0%
! TTGTGAATCAAATCATGAAT+AGG - chr1_4:59547384-59547403 None:intergenic 25.0%
!! GCTACAAAAAACTGAATTTT+AGG + chr1_4:59547759-59547778 Msa0174050:intron 25.0%
! CATATACATTCTAACTATAC+AGG - chr1_4:59547830-59547849 None:intergenic 25.0%
!! AAAGTTGTTTATTTGCTAGT+TGG + chr1_4:59548058-59548077 Msa0174050:intron 25.0%
!!! TTCTGTGTTATTTTAAGAGT+TGG + chr1_4:59548255-59548274 Msa0174050:intron 25.0%
! GATTTATTGTTATAGCTGAT+AGG + chr1_4:59548436-59548455 Msa0174050:CDS 25.0%
!! AATAAAACCTTTTCAGCATT+AGG + chr1_4:59548789-59548808 Msa0174050:intron 25.0%
! TTAACTACTGTATTATATGC+AGG + chr1_4:59549043-59549062 Msa0174050:intron 25.0%
! ACAACCATTAAAAATTACCT+TGG - chr1_4:59549111-59549130 None:intergenic 25.0%
! ATGACACTTATAATTACATG+TGG + chr1_4:59549137-59549156 Msa0174050:intron 25.0%
!! AAAGGCATAATTAGATAGTA+TGG - chr1_4:59549182-59549201 None:intergenic 25.0%
! ATGAGAAAAACTAAGCAAAA+AGG - chr1_4:59549200-59549219 None:intergenic 25.0%
!! TAGGTTATTGTTAGTTTCAT+TGG + chr1_4:59549389-59549408 Msa0174050:intron 25.0%
! TTAGTTTCATTGGATCAATT+GGG + chr1_4:59549399-59549418 Msa0174050:intron 25.0%
! AAATATTTACACCCAAACTT+TGG + chr1_4:59549443-59549462 Msa0174050:intron 25.0%
! TTATGAAAATTTGACTGTAG+AGG + chr1_4:59549845-59549864 Msa0174050:intron 25.0%
! TTGAAAATTGTGTTTCACAA+GGG - chr1_4:59549918-59549937 None:intergenic 25.0%
!! AGGGTATCATATAATGTTAT+TGG - chr1_4:59550199-59550218 None:intergenic 25.0%
! ATTCTACATTTCACTATTTC+AGG + chr1_4:59550222-59550241 Msa0174050:intron 25.0%
! AAACTTTCAAATAACGTTTC+TGG + chr1_4:59550510-59550529 Msa0174050:intron 25.0%
!! AGTTTCAGCTTTTAGTATAA+TGG + chr1_4:59550786-59550805 Msa0174050:intron 25.0%
!! GTTTCAGCTTTTAGTATAAT+GGG + chr1_4:59550787-59550806 Msa0174050:intron 25.0%
! AATTGGACTACATTCATTAA+TGG - chr1_4:59551045-59551064 None:intergenic 25.0%
! TAAATAATGTGCTTTAGCAT+TGG - chr1_4:59551876-59551895 None:intergenic 25.0%
!!! GTTTTTTCTGTCTTTTTGAT+TGG - chr1_4:59551973-59551992 None:intergenic 25.0%
! AAAAAGACAGAAAAAACTGA+AGG + chr1_4:59551976-59551995 Msa0174050:intron 25.0%
! TACAGAATCAAACAAAAGAT+AGG - chr1_4:59552044-59552063 None:intergenic 25.0%
!! TTTTTATATTCAGTGCTACA+TGG + chr1_4:59552281-59552300 Msa0174050:three_prime_UTR 25.0%
! ACATCCTTATATATAGTTTC+GGG - chr1_4:59552513-59552532 None:intergenic 25.0%
ATAAACCCTAGATATTTCCA+TGG + chr1_4:59544770-59544789 Msa0174050:exon 30.0%
! AAGGATATTTTTCACATCCA+TGG - chr1_4:59544790-59544809 None:intergenic 30.0%
ATGGATGTGAAAAATATCCT+TGG + chr1_4:59544789-59544808 Msa0174050:CDS 30.0%
!! ATTTTTCACCAAAGCACTTA+GGG + chr1_4:59544871-59544890 Msa0174050:intron 30.0%
!! TCTGGTGTTGTTGAATTTAT+AGG + chr1_4:59544930-59544949 Msa0174050:intron 30.0%
AACAAAATTAGAGTCGGAAA+CGG + chr1_4:59545112-59545131 Msa0174050:intron 30.0%
CATATAAAAAAAACAAGGGC+CGG + chr1_4:59545221-59545240 Msa0174050:intron 30.0%
GATATACAACATGTCAAGTT+TGG + chr1_4:59545294-59545313 Msa0174050:intron 30.0%
AACAGAATCTATATCCTATG+GGG - chr1_4:59545414-59545433 None:intergenic 30.0%
CAAACAGAATCTATATCCTA+TGG - chr1_4:59545416-59545435 None:intergenic 30.0%
CATAGGATATAGATTCTGTT+TGG + chr1_4:59545414-59545433 Msa0174050:intron 30.0%
!! TGTTTTTATGAGCTATTACG+AGG + chr1_4:59545554-59545573 Msa0174050:intron 30.0%
TTCATTGAATAACAGGTATC+TGG - chr1_4:59545701-59545720 None:intergenic 30.0%
! ATGAACCTAAAAGTGGTTTT+TGG + chr1_4:59545716-59545735 Msa0174050:intron 30.0%
ATAAGTTGTTCTTTGGTACT+TGG + chr1_4:59545922-59545941 Msa0174050:intron 30.0%
CACTCTAAATCTTTCTTCTT+CGG - chr1_4:59545974-59545993 None:intergenic 30.0%
TTCAATAGATTCTCAGACAT+TGG - chr1_4:59546210-59546229 None:intergenic 30.0%
!! GAAGAAGAAAAGTACCAAAT+AGG + chr1_4:59546227-59546246 Msa0174050:intron 30.0%
ATTAGGTGAGAGCAATTTAA+TGG - chr1_4:59546331-59546350 None:intergenic 30.0%
GTCAATCAATGATATGGATA+TGG + chr1_4:59546370-59546389 Msa0174050:intron 30.0%
CAATGATATGGATATGGTAT+TGG + chr1_4:59546376-59546395 Msa0174050:intron 30.0%
!!! TTTGATTTTTTCCCTCATTC+AGG + chr1_4:59546616-59546635 Msa0174050:intron 30.0%
! TTACGAGCAGAATTTTTGAA+AGG - chr1_4:59546659-59546678 None:intergenic 30.0%
ATGCTCCAAGATAACATAAA+GGG - chr1_4:59546745-59546764 None:intergenic 30.0%
TTATAACGATGCAGATATTG+GGG + chr1_4:59546904-59546923 Msa0174050:intron 30.0%
!! TTTGTTCATAACTTGTTTGC+AGG - chr1_4:59547017-59547036 None:intergenic 30.0%
! AGAAGATTGGTAATAGTGTT+GGG + chr1_4:59547085-59547104 Msa0174050:intron 30.0%
! GATTCACAATTTGATGATCA+CGG + chr1_4:59547395-59547414 Msa0174050:intron 30.0%
CAGCAGATTCAAATTGTAAA+TGG + chr1_4:59547430-59547449 Msa0174050:intron 30.0%
! TTCTTTTGCCAAGTATAACA+AGG + chr1_4:59547474-59547493 Msa0174050:CDS 30.0%
! TGCATTTACCTTGTTATACT+TGG - chr1_4:59547485-59547504 None:intergenic 30.0%
AAGTATAACAAGGTAAATGC+AGG + chr1_4:59547484-59547503 Msa0174050:intron 30.0%
! TTCTGATTTTCTATCTTGAC+TGG + chr1_4:59547540-59547559 Msa0174050:intron 30.0%
! TCTGATTTTCTATCTTGACT+GGG + chr1_4:59547541-59547560 Msa0174050:intron 30.0%
TGTTGACATAACAAGATACA+CGG + chr1_4:59547616-59547635 Msa0174050:CDS 30.0%
AAATATTTGGCAAATCCTGT+AGG + chr1_4:59547653-59547672 Msa0174050:intron 30.0%
! TGTTGTTTAAGCAATCTCAA+AGG - chr1_4:59547721-59547740 None:intergenic 30.0%
! ATGTATATGAAAGGCCTTTT+CGG + chr1_4:59547841-59547860 Msa0174050:intron 30.0%
TTAAGATGTATACACCGAAA+AGG - chr1_4:59547858-59547877 None:intergenic 30.0%
! TTTCGGTGTATACATCTTAA+AGG + chr1_4:59547858-59547877 Msa0174050:intron 30.0%
! TTCGGTGTATACATCTTAAA+GGG + chr1_4:59547859-59547878 Msa0174050:intron 30.0%
CTTCCTTAACTGTATCTTTA+GGG - chr1_4:59547900-59547919 None:intergenic 30.0%
! TTTTTATAACCAATGCCCTA+AGG + chr1_4:59548009-59548028 Msa0174050:intron 30.0%
! TTTTATAACCAATGCCCTAA+GGG + chr1_4:59548010-59548029 Msa0174050:intron 30.0%
GGGTAAGTGCATTTATAAAA+CGG - chr1_4:59548217-59548236 None:intergenic 30.0%
ATTTATGTAGAAATGGACCA+AGG + chr1_4:59548368-59548387 Msa0174050:intron 30.0%
TTGAAGGATCGATATTATAG+TGG + chr1_4:59548486-59548505 Msa0174050:CDS 30.0%
! TTCAGCAATTCTTTTTGCTT+CGG - chr1_4:59549075-59549094 None:intergenic 30.0%
! ACGACCAAGGTAATTTTTAA+TGG + chr1_4:59549104-59549123 Msa0174050:intron 30.0%
ACTTATAATTACATGTGGAG+AGG + chr1_4:59549142-59549161 Msa0174050:intron 30.0%
GAAACATCTCTTAGTATTTG+AGG - chr1_4:59549240-59549259 None:intergenic 30.0%
! GTTAGTTTCATTGGATCAAT+TGG + chr1_4:59549398-59549417 Msa0174050:intron 30.0%
TAGTTTCATTGGATCAATTG+GGG + chr1_4:59549400-59549419 Msa0174050:intron 30.0%
CGCATGGTAAGTTAAAAATA+AGG + chr1_4:59549682-59549701 Msa0174050:intron 30.0%
CTTGAAAATTGTGTTTCACA+AGG - chr1_4:59549919-59549938 None:intergenic 30.0%
!! CACAATTTTCAAGCATTTGT+TGG + chr1_4:59549926-59549945 Msa0174050:intron 30.0%
ACATCAGAAATGCATTAAAG+AGG - chr1_4:59550129-59550148 None:intergenic 30.0%
!! TAATGTTATTGGTACTGATC+AGG - chr1_4:59550188-59550207 None:intergenic 30.0%
TAGTGAAATGTAGAATGCAA+GGG - chr1_4:59550218-59550237 None:intergenic 30.0%
ATAGTGAAATGTAGAATGCA+AGG - chr1_4:59550219-59550238 None:intergenic 30.0%
ACATTTCACTATTTCAGGAT+TGG + chr1_4:59550227-59550246 Msa0174050:intron 30.0%
TGGTTAATGAGTTTCAGTTA+AGG - chr1_4:59550426-59550445 None:intergenic 30.0%
CAAGTAGTGTCTTAATAGTT+CGG + chr1_4:59550571-59550590 Msa0174050:intron 30.0%
TCTCACATTTCAAGCATAAA+TGG + chr1_4:59550702-59550721 Msa0174050:intron 30.0%
! GTATTTCTATTAGAAGCCTA+AGG - chr1_4:59550971-59550990 None:intergenic 30.0%
GGTATTTCGTCTTCAAAAAA+AGG - chr1_4:59551097-59551116 None:intergenic 30.0%
! AAATTATTATCAGGAAGTGC+AGG - chr1_4:59551118-59551137 None:intergenic 30.0%
TTTCTTTGTACTATGATTGC+AGG + chr1_4:59551153-59551172 Msa0174050:intron 30.0%
GCTGAAACAAATTAAAGACA+CGG - chr1_4:59551370-59551389 None:intergenic 30.0%
TTTGTTTCAGCTGCAAAATA+AGG + chr1_4:59551379-59551398 Msa0174050:intron 30.0%
! CCATTCTTTTTCTCAAATCA+CGG + chr1_4:59551556-59551575 Msa0174050:intron 30.0%
! CATTCTTTTTCTCAAATCAC+GGG + chr1_4:59551557-59551576 Msa0174050:intron 30.0%
TAGATGAAATTTCTAACGCT+TGG - chr1_4:59551713-59551732 None:intergenic 30.0%
AGAATCAAACAAAAGATAGG+AGG - chr1_4:59552041-59552060 None:intergenic 30.0%
! ATTTGTAGTGCTCTTTTGAT+AGG + chr1_4:59552169-59552188 Msa0174050:CDS 30.0%
!!! AAGTGAACTTTATTTTGTGC+TGG + chr1_4:59552348-59552367 Msa0174050:three_prime_UTR 30.0%
TATACAAATCCTAATGAGCT+TGG - chr1_4:59552417-59552436 None:intergenic 30.0%
ATATATAGTTTCGGGCTTAA+AGG - chr1_4:59552505-59552524 None:intergenic 30.0%
TAAGCCCGAAACTATATATA+AGG + chr1_4:59552506-59552525 Msa0174050:three_prime_UTR 30.0%
TAAGGATGTAGAAATTGGTT+TGG + chr1_4:59552524-59552543 Msa0174050:three_prime_UTR 30.0%
!! ATGTAGAAATTGGTTTGGTA+AGG + chr1_4:59552529-59552548 Msa0174050:three_prime_UTR 30.0%
! TTTTTCGCAGCTCAAAACTT+TGG + chr1_4:59544638-59544657 Msa0174050:five_prime_UTR 35.0%
GAATTCGTGATTAGAAAGAG+TGG + chr1_4:59544723-59544742 Msa0174050:five_prime_UTR 35.0%
CACATCCATGGAAATATCTA+GGG - chr1_4:59544778-59544797 None:intergenic 35.0%
TCACATCCATGGAAATATCT+AGG - chr1_4:59544779-59544798 None:intergenic 35.0%
GATGTGAAAAATATCCTTGG+AGG + chr1_4:59544792-59544811 Msa0174050:CDS 35.0%
AAAAATTGGGTAATCCTCCA+AGG - chr1_4:59544809-59544828 None:intergenic 35.0%
TGAAGTGGGAAGGAAAAATT+GGG - chr1_4:59544822-59544841 None:intergenic 35.0%
TAGAATTCTTCTCCTGAAGT+GGG - chr1_4:59544836-59544855 None:intergenic 35.0%
!! CATTTTTCACCAAAGCACTT+AGG + chr1_4:59544870-59544889 Msa0174050:intron 35.0%
TTATAGGTGTATGCACTTAC+TGG + chr1_4:59544946-59544965 Msa0174050:intron 35.0%
! AATACCTTTTTGTCTGAAGG+AGG - chr1_4:59545024-59545043 None:intergenic 35.0%
TTGTGATTAGTGTTGCAGTA+TGG + chr1_4:59545072-59545091 Msa0174050:intron 35.0%
ACAAAATTAGAGTCGGAAAC+GGG + chr1_4:59545113-59545132 Msa0174050:intron 35.0%
TGCTTATAATAGTAACCGGA+GGG - chr1_4:59545623-59545642 None:intergenic 35.0%
TTGCTTATAATAGTAACCGG+AGG - chr1_4:59545624-59545643 None:intergenic 35.0%
!!! TTTGGTTTTTATAGTGACCG+AGG + chr1_4:59545734-59545753 Msa0174050:intron 35.0%
GTTAATGACATGTACTTCCT+CGG - chr1_4:59545754-59545773 None:intergenic 35.0%
AAGTAATTGTGCAACTGCTT+GGG - chr1_4:59545780-59545799 None:intergenic 35.0%
TAAGTAATTGTGCAACTGCT+TGG - chr1_4:59545781-59545800 None:intergenic 35.0%
TATCTTCTTATGAGCCAGTT+TGG - chr1_4:59545833-59545852 None:intergenic 35.0%
!! TCTGTTTGGCACTTGTTTTT+GGG + chr1_4:59546131-59546150 Msa0174050:intron 35.0%
GGTTCATAAACACACATGAA+TGG - chr1_4:59546181-59546200 None:intergenic 35.0%
!! ATTCTCAGACATTGGCTTAT+AGG - chr1_4:59546202-59546221 None:intergenic 35.0%
!! GAAGAAAAGTACCAAATAGG+TGG + chr1_4:59546230-59546249 Msa0174050:intron 35.0%
! ACCTCTAGAAAACTTGGTTA+GGG - chr1_4:59546407-59546426 None:intergenic 35.0%
TTACAAACGAACTTACCCAA+TGG - chr1_4:59546700-59546719 None:intergenic 35.0%
GTTAGCCCTTTATGTTATCT+TGG + chr1_4:59546737-59546756 Msa0174050:intron 35.0%
CATGCTCCAAGATAACATAA+AGG - chr1_4:59546746-59546765 None:intergenic 35.0%
CTTTATGTTATCTTGGAGCA+TGG + chr1_4:59546744-59546763 Msa0174050:intron 35.0%
! ACACTTCATGCAATCTGTTT+TGG - chr1_4:59546828-59546847 None:intergenic 35.0%
TTATAAATGCAACGGAGTTG+GGG - chr1_4:59546890-59546909 None:intergenic 35.0%
GTTATAAATGCAACGGAGTT+GGG - chr1_4:59546891-59546910 None:intergenic 35.0%
CTGCATCGTTATAAATGCAA+CGG - chr1_4:59546898-59546917 None:intergenic 35.0%
TATAACGATGCAGATATTGG+GGG + chr1_4:59546905-59546924 Msa0174050:intron 35.0%
AGAGAGCTAAACAATCAATG+TGG + chr1_4:59546934-59546953 Msa0174050:intron 35.0%
GAGAGCTAAACAATCAATGT+GGG + chr1_4:59546935-59546954 Msa0174050:intron 35.0%
AGAGCTAAACAATCAATGTG+GGG + chr1_4:59546936-59546955 Msa0174050:intron 35.0%
!! GAATGGATTTGGTAATGAGT+GGG + chr1_4:59546963-59546982 Msa0174050:intron 35.0%
! GAGAAGATTGGTAATAGTGT+TGG + chr1_4:59547084-59547103 Msa0174050:intron 35.0%
! GAAGATTGGTAATAGTGTTG+GGG + chr1_4:59547086-59547105 Msa0174050:intron 35.0%
ACACCGAAGATATTTAGGTA+TGG + chr1_4:59547199-59547218 Msa0174050:intron 35.0%
AAATGGGCAGCTGAAAATAT+AGG + chr1_4:59547251-59547270 Msa0174050:intron 35.0%
AATGGGCAGCTGAAAATATA+GGG + chr1_4:59547252-59547271 Msa0174050:intron 35.0%
AAATCAGAAAAATGCAGACC+AGG - chr1_4:59547529-59547548 None:intergenic 35.0%
! CGAGGAGTATGAGAAATATT+TGG + chr1_4:59547640-59547659 Msa0174050:CDS 35.0%
AATCTAGACATGATACCTAC+AGG - chr1_4:59547671-59547690 None:intergenic 35.0%
! GGTGATGATGTATCATGTTA+AGG + chr1_4:59547780-59547799 Msa0174050:intron 35.0%
GTTCCCTAAAGATACAGTTA+AGG + chr1_4:59547894-59547913 Msa0174050:intron 35.0%
GCTTCCTTAACTGTATCTTT+AGG - chr1_4:59547901-59547920 None:intergenic 35.0%
AGTTGGATTTCGATATGCAT+TGG + chr1_4:59548272-59548291 Msa0174050:intron 35.0%
GATATGCATTGGACATTCTA+CGG + chr1_4:59548283-59548302 Msa0174050:intron 35.0%
ATATGCATTGGACATTCTAC+GGG + chr1_4:59548284-59548303 Msa0174050:intron 35.0%
TCGAACTGTTGAAGAATTGA+AGG + chr1_4:59548470-59548489 Msa0174050:CDS 35.0%
GTTATATGGTTCCTGCATTA+AGG - chr1_4:59548850-59548869 None:intergenic 35.0%
ATCTCCTGTGAAACGTTATA+TGG - chr1_4:59548864-59548883 None:intergenic 35.0%
ATATAACGTTTCACAGGAGA+TGG + chr1_4:59548863-59548882 Msa0174050:CDS 35.0%
! ACAGTTCTAATTTCATTCCC+AGG - chr1_4:59549331-59549350 None:intergenic 35.0%
CCTACTCTCAGTGAAAATAT+AGG - chr1_4:59549373-59549392 None:intergenic 35.0%
! CCTATATTTTCACTGAGAGT+AGG + chr1_4:59549370-59549389 Msa0174050:intron 35.0%
TTATCTGTCGATATCATGGA+AGG - chr1_4:59549640-59549659 None:intergenic 35.0%
TGCATTATCTGTCGATATCA+TGG - chr1_4:59549644-59549663 None:intergenic 35.0%
TGTCAACAGAAAAGAGACAT+CGG - chr1_4:59549723-59549742 None:intergenic 35.0%
! TTCTTTCTCTTTTTGTGCTG+GGG - chr1_4:59549781-59549800 None:intergenic 35.0%
! GTTCTTTCTCTTTTTGTGCT+GGG - chr1_4:59549782-59549801 None:intergenic 35.0%
! TGTTCTTTCTCTTTTTGTGC+TGG - chr1_4:59549783-59549802 None:intergenic 35.0%
TATTCAAGAACCTATGCACT+TGG + chr1_4:59550011-59550030 Msa0174050:CDS 35.0%
ATCAAACTTTGCTGGAACTT+GGG + chr1_4:59550090-59550109 Msa0174050:CDS 35.0%
TCAACCACTTGGTTTACTTT+GGG + chr1_4:59550453-59550472 Msa0174050:intron 35.0%
TTAAGACACTACTTGAGCTA+AGG - chr1_4:59550566-59550585 None:intergenic 35.0%
ATTGTAGACACACTTGATCA+TGG - chr1_4:59550669-59550688 None:intergenic 35.0%
GGTTCAAACTTAAATGAGCT+TGG - chr1_4:59550897-59550916 None:intergenic 35.0%
! AGCTCATTTAAGTTTGAACC+TGG + chr1_4:59550897-59550916 Msa0174050:intron 35.0%
TTTCTATTAGAAGCCTAAGG+AGG - chr1_4:59550968-59550987 None:intergenic 35.0%
! TCTTCAAAAAAAGGAAGTGC+AGG - chr1_4:59551088-59551107 None:intergenic 35.0%
GTTAGTGAACAAACCAATGT+TGG - chr1_4:59551338-59551357 None:intergenic 35.0%
CCGTGATTTGAGAAAAAGAA+TGG - chr1_4:59551559-59551578 None:intergenic 35.0%
TTCCAGATAACACAAGTTCT+GGG + chr1_4:59551642-59551661 Msa0174050:CDS 35.0%
ATTGTATGCATGCAATGAAC+TGG + chr1_4:59551744-59551763 Msa0174050:intron 35.0%
AGGGGAAAGAATTGGTAAAA+GGG + chr1_4:59551771-59551790 Msa0174050:intron 35.0%
TGAATTGAAGCTCTTACTAG+GGG - chr1_4:59552018-59552037 None:intergenic 35.0%
GTGAATTGAAGCTCTTACTA+GGG - chr1_4:59552019-59552038 None:intergenic 35.0%
ATAAAGTTCACTTCCTCTGT+GGG - chr1_4:59552341-59552360 None:intergenic 35.0%
AATAAAGTTCACTTCCTCTG+TGG - chr1_4:59552342-59552361 None:intergenic 35.0%
CATAAGCATCTGCAAATTTC+TGG - chr1_4:59552467-59552486 None:intergenic 35.0%
! TTTTTGTCCAAGGTTCGAAC+CGG - chr1_4:59544516-59544535 None:intergenic 40.0%
ACTGTGCTGTAACACTGTAA+TGG + chr1_4:59544611-59544630 Msa0174050:five_prime_UTR 40.0%
CTGAAGTGGGAAGGAAAAAT+TGG - chr1_4:59544823-59544842 None:intergenic 40.0%
! CAATTTTTCCTTCCCACTTC+AGG + chr1_4:59544821-59544840 Msa0174050:CDS 40.0%
CTAGAATTCTTCTCCTGAAG+TGG - chr1_4:59544837-59544856 None:intergenic 40.0%
TGGTTAAACCCTAAGTGCTT+TGG - chr1_4:59544882-59544901 None:intergenic 40.0%
AAATCAACTGCTGGCATAAG+AGG - chr1_4:59544982-59545001 None:intergenic 40.0%
AACAGAGACAAATCAACTGC+TGG - chr1_4:59544991-59545010 None:intergenic 40.0%
AAAGCCTCCTTCAGACAAAA+AGG + chr1_4:59545017-59545036 Msa0174050:CDS 40.0%
CAAAATTAGAGTCGGAAACG+GGG + chr1_4:59545114-59545133 Msa0174050:intron 40.0%
AATAACTTACGTACTCCCTC+CGG + chr1_4:59545605-59545624 Msa0174050:intron 40.0%
!! GTCTGTTTGGCACTTGTTTT+TGG + chr1_4:59546130-59546149 Msa0174050:intron 40.0%
!!! TTTGGCACTTGTTTTTGGGT+AGG + chr1_4:59546135-59546154 Msa0174050:intron 40.0%
!!! ACTTGTTTTTGGGTAGGTTG+AGG + chr1_4:59546141-59546160 Msa0174050:intron 40.0%
! TAGGTTGAGGAATTCATGCA+TGG + chr1_4:59546154-59546173 Msa0174050:intron 40.0%
GCATGTACTATCCACCTATT+TGG - chr1_4:59546244-59546263 None:intergenic 40.0%
! TCCCTAACCAAGTTTTCTAG+AGG + chr1_4:59546403-59546422 Msa0174050:intron 40.0%
! GACCTCTAGAAAACTTGGTT+AGG - chr1_4:59546408-59546427 None:intergenic 40.0%
TTGAAGCCTAAACAATGTCC+GGG - chr1_4:59546494-59546513 None:intergenic 40.0%
CTTGAAGCCTAAACAATGTC+CGG - chr1_4:59546495-59546514 None:intergenic 40.0%
AGCTCATACAAGAGCCATTT+GGG - chr1_4:59546518-59546537 None:intergenic 40.0%
TTTCCCTCATTCAGGTCATT+TGG + chr1_4:59546624-59546643 Msa0174050:intron 40.0%
ATGATCTTCAGCTTCACCAT+TGG + chr1_4:59546681-59546700 Msa0174050:intron 40.0%
TGATCTTCAGCTTCACCATT+GGG + chr1_4:59546682-59546701 Msa0174050:intron 40.0%
TGGAAATATTGCCTCTTCCA+TGG + chr1_4:59546764-59546783 Msa0174050:intron 40.0%
TAAGGATATGCATCGGAATG+CGG - chr1_4:59546800-59546819 None:intergenic 40.0%
!!! CAATCTGTTTTGGTGGTGTA+AGG - chr1_4:59546818-59546837 None:intergenic 40.0%
!! CTTCATGCAATCTGTTTTGG+TGG - chr1_4:59546825-59546844 None:intergenic 40.0%
! GATTGCATGAAGTGTTTCCT+TGG + chr1_4:59546833-59546852 Msa0174050:intron 40.0%
GTGAATCTGGCACATTATTC+TGG - chr1_4:59546862-59546881 None:intergenic 40.0%
CGTTATAAATGCAACGGAGT+TGG - chr1_4:59546892-59546911 None:intergenic 40.0%
CTAAACAATCAATGTGGGGT+GGG + chr1_4:59546940-59546959 Msa0174050:intron 40.0%
TAAACAATCAATGTGGGGTG+GGG + chr1_4:59546941-59546960 Msa0174050:intron 40.0%
!! GGAATGGATTTGGTAATGAG+TGG + chr1_4:59546962-59546981 Msa0174050:intron 40.0%
! TGCAAGAATCTTGTTTGCTG+CGG + chr1_4:59546989-59547008 Msa0174050:intron 40.0%
!!! CAATGGAGGCTTGTCATTTT+AGG - chr1_4:59547124-59547143 None:intergenic 40.0%
CTAAAATGACAAGCCTCCAT+TGG + chr1_4:59547122-59547141 Msa0174050:intron 40.0%
TTAATTGTCCTTGCCAATGG+AGG - chr1_4:59547138-59547157 None:intergenic 40.0%
AGCTTAATTGTCCTTGCCAA+TGG - chr1_4:59547141-59547160 None:intergenic 40.0%
TGAGAGCAGAGAGACTAAAT+GGG + chr1_4:59547235-59547254 Msa0174050:intron 40.0%
TAAATGGTGTTCCACCAACA+GGG + chr1_4:59547446-59547465 Msa0174050:CDS 40.0%
AATGCTAATGAGTGCCCTTA+GGG - chr1_4:59548027-59548046 None:intergenic 40.0%
AAATGCTAATGAGTGCCCTT+AGG - chr1_4:59548028-59548047 None:intergenic 40.0%
AAGATGCAGATGCAAAGTGA+CGG - chr1_4:59548173-59548192 None:intergenic 40.0%
AATTACACAGCTGTGCTTGA+GGG - chr1_4:59548237-59548256 None:intergenic 40.0%
TATGTAGAAATGGACCAAGG+AGG + chr1_4:59548371-59548390 Msa0174050:intron 40.0%
!! AACTGTTTGACTTGTGTGAG+AGG + chr1_4:59548403-59548422 Msa0174050:CDS 40.0%
CTTCAACAGTTCGAGATGAA+GGG - chr1_4:59548464-59548483 None:intergenic 40.0%
TCTTCAACAGTTCGAGATGA+AGG - chr1_4:59548465-59548484 None:intergenic 40.0%
GCAACATCCTAATGCTGAAA+AGG - chr1_4:59548799-59548818 None:intergenic 40.0%
TTATTCTCCCTCCTTAATGC+AGG + chr1_4:59548836-59548855 Msa0174050:intron 40.0%
TATGGTTCCTGCATTAAGGA+GGG - chr1_4:59548846-59548865 None:intergenic 40.0%
ATATGGTTCCTGCATTAAGG+AGG - chr1_4:59548847-59548866 None:intergenic 40.0%
GGAACCATATAACGTTTCAC+AGG + chr1_4:59548857-59548876 Msa0174050:intron 40.0%
! CTTTGTTTGAGAGAGGATCA+GGG - chr1_4:59548907-59548926 None:intergenic 40.0%
!! CTTGTTGCTTTGTTTGAGAG+AGG - chr1_4:59548914-59548933 None:intergenic 40.0%
TGAATTACGCATAACGACCA+AGG + chr1_4:59549091-59549110 Msa0174050:CDS 40.0%
! AGTATTTGAGGTTCACTAGC+AGG - chr1_4:59549228-59549247 None:intergenic 40.0%
!! TTTTTATTTGTTCAGGGGCC+TGG + chr1_4:59549310-59549329 Msa0174050:intron 40.0%
!! TTTTATTTGTTCAGGGGCCT+GGG + chr1_4:59549311-59549330 Msa0174050:intron 40.0%
CACAGGTTCATCCAAAGTTT+GGG - chr1_4:59549457-59549476 None:intergenic 40.0%
ACACAGGTTCATCCAAAGTT+TGG - chr1_4:59549458-59549477 None:intergenic 40.0%
! TGAGTTGGATGTTGCTTCAA+AGG + chr1_4:59549534-59549553 Msa0174050:CDS 40.0%
TTGTGCAAACGTTACAGAGA+GGG + chr1_4:59549558-59549577 Msa0174050:CDS 40.0%
TGATGGAGATACAGTTTCAC+CGG - chr1_4:59549590-59549609 None:intergenic 40.0%
GGTGGAAGTTCTGTATTTGA+TGG - chr1_4:59549607-59549626 None:intergenic 40.0%
TTAACTTACCATGCGAAGAG+AGG - chr1_4:59549677-59549696 None:intergenic 40.0%
AGAGACATCGGGTGAATAAT+TGG - chr1_4:59549711-59549730 None:intergenic 40.0%
GTCAACAGAAAAGAGACATC+GGG - chr1_4:59549722-59549741 None:intergenic 40.0%
! TCTTTCTCTTTTTGTGCTGG+GGG - chr1_4:59549780-59549799 None:intergenic 40.0%
AACCTATGCACTTGGACAAA+TGG + chr1_4:59550019-59550038 Msa0174050:CDS 40.0%
! ACGTGTTGATCAAACTTTGC+TGG + chr1_4:59550082-59550101 Msa0174050:CDS 40.0%
GATCAAACTTTGCTGGAACT+TGG + chr1_4:59550089-59550108 Msa0174050:CDS 40.0%
TCAAACTTTGCTGGAACTTG+GGG + chr1_4:59550091-59550110 Msa0174050:CDS 40.0%
!! ATTTTAACCCTCCTGTTCCT+AGG + chr1_4:59550297-59550316 Msa0174050:intron 40.0%
! TTTTAACCCTCCTGTTCCTA+GGG + chr1_4:59550298-59550317 Msa0174050:intron 40.0%
TCAGTTAAGGACGAAACGTT+CGG - chr1_4:59550413-59550432 None:intergenic 40.0%
CTCAACCACTTGGTTTACTT+TGG + chr1_4:59550452-59550471 Msa0174050:intron 40.0%
CAACCACTTGGTTTACTTTG+GGG + chr1_4:59550454-59550473 Msa0174050:intron 40.0%
AACCACTTGGTTTACTTTGG+GGG + chr1_4:59550455-59550474 Msa0174050:intron 40.0%
!!! AGCTCTTTTAGAGCTTGACT+TGG + chr1_4:59550536-59550555 Msa0174050:intron 40.0%
TTATGAACACATACTGAGCC+AGG - chr1_4:59550918-59550937 None:intergenic 40.0%
TTTGCTAGGGTGATTGGAAT+TGG - chr1_4:59551062-59551081 None:intergenic 40.0%
! AGGTATTTTGCTAGGGTGAT+TGG - chr1_4:59551068-59551087 None:intergenic 40.0%
! GAAGTGCAGGTATTTTGCTA+GGG - chr1_4:59551075-59551094 None:intergenic 40.0%
! TGCAGGTCAATTTGAAACCA+AGG + chr1_4:59551170-59551189 Msa0174050:intron 40.0%
! GCAGGTCAATTTGAAACCAA+GGG + chr1_4:59551171-59551190 Msa0174050:intron 40.0%
! TCTGCACAAACAGCTTTTGT+TGG - chr1_4:59551199-59551218 None:intergenic 40.0%
!! CTGTTTCTGAAGATTCAGCA+AGG - chr1_4:59551251-59551270 None:intergenic 40.0%
CTTGCTGAATCTTCAGAAAC+AGG + chr1_4:59551249-59551268 Msa0174050:CDS 40.0%
AGGATTACCAACACCAACAT+TGG + chr1_4:59551322-59551341 Msa0174050:intron 40.0%
GAACAAACCAATGTTGGTGT+TGG - chr1_4:59551332-59551351 None:intergenic 40.0%
GTTTCAGCTGCAAAATAAGG+AGG + chr1_4:59551382-59551401 Msa0174050:intron 40.0%
! GAAGGTTCATCTTTTCGTGA+CGG + chr1_4:59551407-59551426 Msa0174050:CDS 40.0%
! AAGGTTCATCTTTTCGTGAC+GGG + chr1_4:59551408-59551427 Msa0174050:CDS 40.0%
GTTCCAGATAACACAAGTTC+TGG + chr1_4:59551641-59551660 Msa0174050:CDS 40.0%
TCCAGATAACACAAGTTCTG+GGG + chr1_4:59551643-59551662 Msa0174050:CDS 40.0%
CTTGGAGAAATTCAGATAGC+AGG - chr1_4:59551695-59551714 None:intergenic 40.0%
! CATGCAATGAACTGGTTTCA+GGG + chr1_4:59551752-59551771 Msa0174050:intron 40.0%
! ATGCAATGAACTGGTTTCAG+GGG + chr1_4:59551753-59551772 Msa0174050:intron 40.0%
CAGGGGAAAGAATTGGTAAA+AGG + chr1_4:59551770-59551789 Msa0174050:intron 40.0%
! TAAAAGGGATCAAAAGCGCA+AGG + chr1_4:59551786-59551805 Msa0174050:intron 40.0%
!! TTCTGTCTTTTTGATTGGGC+TGG - chr1_4:59551968-59551987 None:intergenic 40.0%
GGTGAATTGAAGCTCTTACT+AGG - chr1_4:59552020-59552039 None:intergenic 40.0%
TCCACTGTAGTCACTAAATG+AGG + chr1_4:59552104-59552123 Msa0174050:intron 40.0%
ACCTCATTTAGTGACTACAG+TGG - chr1_4:59552108-59552127 None:intergenic 40.0%
AGGTTTGCATGCTTTCTGTT+AGG + chr1_4:59552124-59552143 Msa0174050:intron 40.0%
TTTGCATGCTTTCTGTTAGG+TGG + chr1_4:59552127-59552146 Msa0174050:intron 40.0%
TACAAATCGCAACACCATTC+CGG - chr1_4:59552156-59552175 None:intergenic 40.0%
TAAAGTTCACTTCCTCTGTG+GGG - chr1_4:59552340-59552359 None:intergenic 40.0%
CAAATCCTAATGAGCTTGGT+TGG - chr1_4:59552413-59552432 None:intergenic 40.0%
ATTCTTCTCCTGAAGTGGGA+AGG - chr1_4:59544832-59544851 None:intergenic 45.0%
TCAGGAGAAGAATTCTAGCG+AGG + chr1_4:59544839-59544858 Msa0174050:CDS 45.0%
TAGGTGTATGCACTTACTGG+TGG + chr1_4:59544949-59544968 Msa0174050:intron 45.0%
!! AGCACAACTGGTTTGAGGTA+AGG + chr1_4:59545143-59545162 Msa0174050:intron 45.0%
!! GCACAACTGGTTTGAGGTAA+GGG + chr1_4:59545144-59545163 Msa0174050:intron 45.0%
! TGGTTTGAGGTAAGGGATCA+GGG + chr1_4:59545151-59545170 Msa0174050:intron 45.0%
AGGGATCAGGGTTCAAAACT+TGG + chr1_4:59545163-59545182 Msa0174050:intron 45.0%
TCTTTACTCTTGTGCCCCAT+AGG + chr1_4:59545397-59545416 Msa0174050:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr1_4:59546015-59546034 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr1_4:59546016-59546035 None:intergenic 45.0%
CCAAACAGACTAAACCAGCA+AGG - chr1_4:59546120-59546139 None:intergenic 45.0%
!! CCTTGCTGGTTTAGTCTGTT+TGG + chr1_4:59546117-59546136 Msa0174050:intron 45.0%
! GGATCGACCTCTAGAAAACT+TGG - chr1_4:59546413-59546432 None:intergenic 45.0%
AACAATATGTTGTGTGGGCC+CGG + chr1_4:59546473-59546492 Msa0174050:intron 45.0%
GTTTAGGCTTCAAGCCCAAA+TGG + chr1_4:59546501-59546520 Msa0174050:intron 45.0%
CAGCTCATACAAGAGCCATT+TGG - chr1_4:59546519-59546538 None:intergenic 45.0%
TCGCCAAATGACCTGAATGA+GGG - chr1_4:59546630-59546649 None:intergenic 45.0%
ATCGCCAAATGACCTGAATG+AGG - chr1_4:59546631-59546650 None:intergenic 45.0%
TCATTCAGGTCATTTGGCGA+TGG + chr1_4:59546630-59546649 Msa0174050:intron 45.0%
! GTTGTTGACTACCATGGAAG+AGG - chr1_4:59546778-59546797 None:intergenic 45.0%
! AATGCGGTTGTTGACTACCA+TGG - chr1_4:59546784-59546803 None:intergenic 45.0%
GGTGGTGTAAGGATATGCAT+CGG - chr1_4:59546807-59546826 None:intergenic 45.0%
GCACATTATTCTGGCAACCA+AGG - chr1_4:59546853-59546872 None:intergenic 45.0%
AGTTGGGGTTCTTGTGAATC+TGG - chr1_4:59546875-59546894 None:intergenic 45.0%
GCTAAACAATCAATGTGGGG+TGG + chr1_4:59546939-59546958 Msa0174050:intron 45.0%
! GCAAGAATCTTGTTTGCTGC+GGG + chr1_4:59546990-59547009 Msa0174050:intron 45.0%
! CAAGAATCTTGTTTGCTGCG+GGG + chr1_4:59546991-59547010 Msa0174050:intron 45.0%
ACAATTAAGCTCCAGCAGTG+AGG + chr1_4:59547150-59547169 Msa0174050:intron 45.0%
CAATTAAGCTCCAGCAGTGA+GGG + chr1_4:59547151-59547170 Msa0174050:intron 45.0%
AGTGAGGGTTGCGTGTTTAA+AGG + chr1_4:59547166-59547185 Msa0174050:intron 45.0%
GTGAGGGTTGCGTGTTTAAA+GGG + chr1_4:59547167-59547186 Msa0174050:intron 45.0%
CTGAGAGCAGAGAGACTAAA+TGG + chr1_4:59547234-59547253 Msa0174050:intron 45.0%
GTAAATGGTGTTCCACCAAC+AGG + chr1_4:59547445-59547464 Msa0174050:CDS 45.0%
AAATGGTGTTCCACCAACAG+GGG + chr1_4:59547447-59547466 Msa0174050:CDS 45.0%
AAAGAATAGTCCCCTGTTGG+TGG - chr1_4:59547460-59547479 None:intergenic 45.0%
GCAAAAGAATAGTCCCCTGT+TGG - chr1_4:59547463-59547482 None:intergenic 45.0%
TCAGTCTTTACCTTCATGCC+TGG + chr1_4:59547508-59547527 Msa0174050:intron 45.0%
AAAATGCAGACCAGGCATGA+AGG - chr1_4:59547521-59547540 None:intergenic 45.0%
CATAACAAGATACACGGACG+AGG + chr1_4:59547622-59547641 Msa0174050:CDS 45.0%
GAATTACACAGCTGTGCTTG+AGG - chr1_4:59548238-59548257 None:intergenic 45.0%
CAGTTGATCTGTTTCCTCCT+TGG - chr1_4:59548388-59548407 None:intergenic 45.0%
TCCTGGCAATTAACATAGCC+CGG - chr1_4:59548643-59548662 None:intergenic 45.0%
TGCCAGGAATCCATCTTCTA+CGG + chr1_4:59548655-59548674 Msa0174050:CDS 45.0%
! ATCCGTAGAAGATGGATTCC+TGG - chr1_4:59548660-59548679 None:intergenic 45.0%
ACTGCAACATCCGTAGAAGA+TGG - chr1_4:59548668-59548687 None:intergenic 45.0%
ATCTTCTACGGATGTTGCAG+TGG + chr1_4:59548667-59548686 Msa0174050:CDS 45.0%
!! GCTTTGTTTGAGAGAGGATC+AGG - chr1_4:59548908-59548927 None:intergenic 45.0%
ACAAGAGCGAAGAGATGAAG+AGG + chr1_4:59548929-59548948 Msa0174050:CDS 45.0%
AACATCCAACTCAGACTCTC+GGG - chr1_4:59549527-59549546 None:intergenic 45.0%
CAACATCCAACTCAGACTCT+CGG - chr1_4:59549528-59549547 None:intergenic 45.0%
CTTGTGCAAACGTTACAGAG+AGG + chr1_4:59549557-59549576 Msa0174050:CDS 45.0%
ATGGAGATACAGTTTCACCG+GGG - chr1_4:59549588-59549607 None:intergenic 45.0%
GATGGAGATACAGTTTCACC+GGG - chr1_4:59549589-59549608 None:intergenic 45.0%
! ATCATGGAAGGCACGACTAT+TGG - chr1_4:59549628-59549647 None:intergenic 45.0%
CACCATTTGTCCAAGTGCAT+AGG - chr1_4:59550024-59550043 None:intergenic 45.0%
GACTACAACAGGGAGGATAA+AGG - chr1_4:59550154-59550173 None:intergenic 45.0%
GCTGCTACATGACTACAACA+GGG - chr1_4:59550164-59550183 None:intergenic 45.0%
AGCTGCTACATGACTACAAC+AGG - chr1_4:59550165-59550184 None:intergenic 45.0%
TTTAACCCTCCTGTTCCTAG+GGG + chr1_4:59550299-59550318 Msa0174050:intron 45.0%
ATGGTAATCCGGACTTAGCT+GGG + chr1_4:59550331-59550350 Msa0174050:intron 45.0%
TTCCTGACTGGAACAATCCT+TGG - chr1_4:59550374-59550393 None:intergenic 45.0%
TTCCAGTCAGGAATCGAACT+CGG + chr1_4:59550381-59550400 Msa0174050:intron 45.0%
CAGTTAAGGACGAAACGTTC+GGG - chr1_4:59550412-59550431 None:intergenic 45.0%
AACCCCCAAAGTAAACCAAG+TGG - chr1_4:59550460-59550479 None:intergenic 45.0%
! CTTGGTTTACTTTGGGGGTT+TGG + chr1_4:59550460-59550479 Msa0174050:intron 45.0%
!!! GGGGTTTGGTTTTGAGATTG+TGG + chr1_4:59550474-59550493 Msa0174050:intron 45.0%
TCAAGCATAAATGGCTCGTG+TGG + chr1_4:59550711-59550730 Msa0174050:intron 45.0%
!! TAGAAGCCTAAGGAGGCATT+TGG - chr1_4:59550961-59550980 None:intergenic 45.0%
!! GGAAGTGCAGGTATTTTGCT+AGG - chr1_4:59551076-59551095 None:intergenic 45.0%
! ACAGCTTTTGTTGGAACCCT+TGG - chr1_4:59551190-59551209 None:intergenic 45.0%
CTGCAAAATAAGGAGGCTGA+AGG + chr1_4:59551389-59551408 Msa0174050:CDS 45.0%
! CCAGATAACACAAGTTCTGG+GGG + chr1_4:59551644-59551663 Msa0174050:CDS 45.0%
! GCATGCAATGAACTGGTTTC+AGG + chr1_4:59551751-59551770 Msa0174050:intron 45.0%
CTGGTTTCAGGGGAAAGAAT+TGG + chr1_4:59551763-59551782 Msa0174050:intron 45.0%
ACGTTACCTGTAAATGCGTC+TGG + chr1_4:59551917-59551936 Msa0174050:intron 45.0%
TAACCACAATCAGAACTGCC+AGG - chr1_4:59552235-59552254 None:intergenic 45.0%
CATCAAATACATCCCCACAG+AGG + chr1_4:59552325-59552344 Msa0174050:three_prime_UTR 45.0%
!! ATAAATAATACTTATTAAAA+GGG - chr1_4:59548968-59548987 None:intergenic 5.0%
!! TATAAATAATACTTATTAAA+AGG - chr1_4:59548969-59548988 None:intergenic 5.0%
!! TTTAATAAGTATTATTTATA+TGG + chr1_4:59548969-59548988 Msa0174050:intron 5.0%
!!! TTCTTTTTAATTAAATTTTT+AGG + chr1_4:59551474-59551493 Msa0174050:intron 5.0%
!!! TTTATTTATTTATTTTATCT+TGG + chr1_4:59551892-59551911 Msa0174050:intron 5.0%
ATTAGAGTCGGAAACGGGGT+TGG + chr1_4:59545118-59545137 Msa0174050:intron 50.0%
TTAGAGTCGGAAACGGGGTT+GGG + chr1_4:59545119-59545138 Msa0174050:intron 50.0%
!! TGGGTAGCACAACTGGTTTG+AGG + chr1_4:59545138-59545157 Msa0174050:intron 50.0%
! CTGGTTTGAGGTAAGGGATC+AGG + chr1_4:59545150-59545169 Msa0174050:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr1_4:59546011-59546030 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr1_4:59546017-59546036 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr1_4:59546014-59546033 Msa0174050:intron 50.0%
GCAAGGAACTTTCAAGCGAG+TGG - chr1_4:59546103-59546122 None:intergenic 50.0%
CTCGCTTGAAAGTTCCTTGC+TGG + chr1_4:59546103-59546122 Msa0174050:intron 50.0%
CGATGCAGATATTGGGGGAA+CGG + chr1_4:59546910-59546929 Msa0174050:intron 50.0%
GATGCAGATATTGGGGGAAC+GGG + chr1_4:59546911-59546930 Msa0174050:intron 50.0%
AATCAATGTGGGGTGGGGAA+TGG + chr1_4:59546946-59546965 Msa0174050:intron 50.0%
TCGTCACATGTCTCTCAGCA+TGG + chr1_4:59547051-59547070 Msa0174050:intron 50.0%
TCTCTCAGCATGGACTTGCA+TGG + chr1_4:59547061-59547080 Msa0174050:intron 50.0%
CTCTCAGCATGGACTTGCAT+GGG + chr1_4:59547062-59547081 Msa0174050:intron 50.0%
GGACTTGCATGGGAGAAGAT+TGG + chr1_4:59547072-59547091 Msa0174050:intron 50.0%
ATGACAAGCCTCCATTGGCA+AGG + chr1_4:59547127-59547146 Msa0174050:intron 50.0%
AGGGTTGCGTGTTTAAAGGG+AGG + chr1_4:59547170-59547189 Msa0174050:intron 50.0%
AATGAGTGCCCTTAGGGCAT+TGG - chr1_4:59548021-59548040 None:intergenic 50.0%
GCAGATGCAAAGTGACGGTT+AGG - chr1_4:59548168-59548187 None:intergenic 50.0%
CCTGGCAATTAACATAGCCC+GGG - chr1_4:59548642-59548661 None:intergenic 50.0%
TGCAGTGGATCCACTTGTTC+AGG + chr1_4:59548682-59548701 Msa0174050:CDS 50.0%
TGGATCCACTTGTTCAGGTG+TGG + chr1_4:59548687-59548706 Msa0174050:intron 50.0%
ACGTTTCACAGGAGATGGAG+CGG + chr1_4:59548868-59548887 Msa0174050:CDS 50.0%
AGATACAGTTTCACCGGGGT+TGG - chr1_4:59549584-59549603 None:intergenic 50.0%
! ATGGAAGGCACGACTATTGG+TGG - chr1_4:59549625-59549644 None:intergenic 50.0%
TACCATAGCCTCTCTTCGCA+TGG + chr1_4:59549666-59549685 Msa0174050:CDS 50.0%
TACCATGCGAAGAGAGGCTA+TGG - chr1_4:59549671-59549690 None:intergenic 50.0%
! TCTTTTTGTGCTGGGGGAAC+AGG - chr1_4:59549774-59549793 None:intergenic 50.0%
CAATCTGCAAGCTCATCAGC+TGG + chr1_4:59550044-59550063 Msa0174050:CDS 50.0%
CAAGCTCATCAGCTGGACTT+CGG + chr1_4:59550051-59550070 Msa0174050:CDS 50.0%
GCTACATGACTACAACAGGG+AGG - chr1_4:59550161-59550180 None:intergenic 50.0%
CAGCTAAGTCCGGATTACCA+TGG - chr1_4:59550332-59550351 None:intergenic 50.0%
CATGGTAATCCGGACTTAGC+TGG + chr1_4:59550330-59550349 Msa0174050:intron 50.0%
ACTTACCTCCCAGCTAAGTC+CGG - chr1_4:59550342-59550361 None:intergenic 50.0%
GCTGGGAGGTAAGTAAAGTC+CGG + chr1_4:59550348-59550367 Msa0174050:intron 50.0%
AGGTAAGTAAAGTCCGGCCA+AGG + chr1_4:59550354-59550373 Msa0174050:intron 50.0%
TGACTGGAACAATCCTTGGC+CGG - chr1_4:59550370-59550389 None:intergenic 50.0%
TCCAGTCAGGAATCGAACTC+GGG + chr1_4:59550382-59550401 Msa0174050:intron 50.0%
ACCACTTGAGCTCAACCACT+TGG + chr1_4:59550442-59550461 Msa0174050:intron 50.0%
ACCAAGTGGTTGAGCTCAAG+TGG - chr1_4:59550446-59550465 None:intergenic 50.0%
GCTCTTCCAAATGCCTCCTT+AGG + chr1_4:59550952-59550971 Msa0174050:intron 50.0%
CGAAACAACGGGAACACCAA+AGG + chr1_4:59551439-59551458 Msa0174050:CDS 50.0%
CCCCCAGAACTTGTGTTATC+TGG - chr1_4:59551647-59551666 None:intergenic 50.0%
! GGGATCAAAAGCGCAAGGTA+CGG + chr1_4:59551791-59551810 Msa0174050:intron 50.0%
TGTCGTCCAGACGCATTTAC+AGG - chr1_4:59551926-59551945 None:intergenic 50.0%
GCTTTCTGTTAGGTGGCAAC+CGG + chr1_4:59552134-59552153 Msa0174050:intron 50.0%
AGCAGCGAACTCAAAACTCC+TGG + chr1_4:59552214-59552233 Msa0174050:CDS 50.0%
! ACTCCTGGCAGTTCTGATTG+TGG + chr1_4:59552229-59552248 Msa0174050:CDS 50.0%
CAGTGCTACATGGAGCAATG+AGG + chr1_4:59552291-59552310 Msa0174050:three_prime_UTR 50.0%
TTAGAGTGATACCAGCCACC+AGG + chr1_4:59552378-59552397 Msa0174050:three_prime_UTR 50.0%
AGGGACCAACCAAGCTCATT+AGG + chr1_4:59552405-59552424 Msa0174050:three_prime_UTR 50.0%
! GTAAGGTCCGGTTCGAACCT+TGG + chr1_4:59544506-59544525 Msa0174050:five_prime_UTR 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr1_4:59546009-59546028 Msa0174050:intron 55.0%
TGTGGGCCCGGACATTGTTT+AGG + chr1_4:59546485-59546504 Msa0174050:intron 55.0%
! TGTGGGGTGGGGAATGGATT+TGG + chr1_4:59546952-59546971 Msa0174050:intron 55.0%
AAACACGCAACCCTCACTGC+TGG - chr1_4:59547164-59547183 None:intergenic 55.0%
GTCCTTGCCATGCAGTATCC+CGG + chr1_4:59548621-59548640 Msa0174050:intron 55.0%
TCCTTGCCATGCAGTATCCC+GGG + chr1_4:59548622-59548641 Msa0174050:intron 55.0%
ACATAGCCCGGGATACTGCA+TGG - chr1_4:59548631-59548650 None:intergenic 55.0%
CCCGGGCTATGTTAATTGCC+AGG + chr1_4:59548639-59548658 Msa0174050:CDS 55.0%
GTCGACCACACCTGAACAAG+TGG - chr1_4:59548695-59548714 None:intergenic 55.0%
! TTTTGTGCTGGGGGAACAGG+TGG - chr1_4:59549771-59549790 None:intergenic 55.0%
CCTTTCCCCTAGGAACAGGA+GGG - chr1_4:59550307-59550326 None:intergenic 55.0%
CCTCCTGTTCCTAGGGGAAA+GGG + chr1_4:59550305-59550324 Msa0174050:intron 55.0%
CTCCTGTTCCTAGGGGAAAG+GGG + chr1_4:59550306-59550325 Msa0174050:intron 55.0%
GGAAAGGGGCCATGGTAATC+CGG + chr1_4:59550320-59550339 Msa0174050:intron 55.0%
GTAATCCGGACTTAGCTGGG+AGG + chr1_4:59550334-59550353 Msa0174050:intron 55.0%
GGCCAAGGATTGTTCCAGTC+AGG + chr1_4:59550369-59550388 Msa0174050:intron 55.0%
ACCCGAGTTCGATTCCTGAC+TGG - chr1_4:59550386-59550405 None:intergenic 55.0%
CGGGTCACACTGCGAAACAA+CGG + chr1_4:59551427-59551446 Msa0174050:CDS 55.0%
GGGTCACACTGCGAAACAAC+GGG + chr1_4:59551428-59551447 Msa0174050:CDS 55.0%
TTTGCATCGAGGCGGAGATC+AGG + chr1_4:59551607-59551626 Msa0174050:CDS 55.0%
CTGTTAGGTGGCAACCGGAA+TGG + chr1_4:59552139-59552158 Msa0174050:intron 55.0%
ATACCAGCCACCAGGTGCTA+GGG + chr1_4:59552386-59552405 Msa0174050:three_prime_UTR 55.0%
ACGGGGTTGGGTAGCACAAC+TGG + chr1_4:59545131-59545150 Msa0174050:intron 60.0%
ACTAAGTGGGGTCGGCTGCA+TGG - chr1_4:59546003-59546022 None:intergenic 60.0%
ATGCAGCCGACCCCACTTAG+TGG + chr1_4:59546002-59546021 Msa0174050:intron 60.0%
TGCAGCCGACCCCACTTAGT+GGG + chr1_4:59546003-59546022 Msa0174050:intron 60.0%
GGTTGCCCGAGAGTCTGAGT+TGG + chr1_4:59549519-59549538 Msa0174050:intron 60.0%
GTTACAGAGAGGGCCAACCC+CGG + chr1_4:59549568-59549587 Msa0174050:CDS 60.0%
GGAACAGGTGGAGATGGGGA+AGG - chr1_4:59549759-59549778 None:intergenic 60.0%
TGGGGGAACAGGTGGAGATG+GGG - chr1_4:59549763-59549782 None:intergenic 60.0%
CTGGGGGAACAGGTGGAGAT+GGG - chr1_4:59549764-59549783 None:intergenic 60.0%
CCCTCCTGTTCCTAGGGGAA+AGG + chr1_4:59550304-59550323 Msa0174050:intron 60.0%
CCCTTTCCCCTAGGAACAGG+AGG - chr1_4:59550308-59550327 None:intergenic 60.0%
TTCCTAGGGGAAAGGGGCCA+TGG + chr1_4:59550312-59550331 Msa0174050:intron 60.0%
TACCATGGCCCCTTTCCCCT+AGG - chr1_4:59550317-59550336 None:intergenic 60.0%
TGCCGACAGCGTTTGCATCG+AGG + chr1_4:59551596-59551615 Msa0174050:intron 60.0%
CGCCTCGATGCAAACGCTGT+CGG - chr1_4:59551601-59551620 None:intergenic 60.0%
CGACAGCGTTTGCATCGAGG+CGG + chr1_4:59551599-59551618 Msa0174050:intron 60.0%
GATACCAGCCACCAGGTGCT+AGG + chr1_4:59552385-59552404 Msa0174050:three_prime_UTR 60.0%
! CTTGGTTGGTCCCTAGCACC+TGG - chr1_4:59552399-59552418 None:intergenic 60.0%
GCCCGGGATACTGCATGGCA+AGG - chr1_4:59548626-59548645 None:intergenic 65.0%
GCTGGGGGAACAGGTGGAGA+TGG - chr1_4:59549765-59549784 None:intergenic 65.0%
GGCCCCTTTCCCCTAGGAAC+AGG - chr1_4:59550311-59550330 None:intergenic 65.0%
! GGTTGGTCCCTAGCACCTGG+TGG - chr1_4:59552396-59552415 None:intergenic 65.0%
GGTCCCTAGCACCTGGTGGC+TGG - chr1_4:59552392-59552411 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 59544480 59552573 59544480 ID=Msa0174050;Name=Msa0174050
chr1_4 mRNA 59544480 59552573 59544480 ID=Msa0174050-mRNA-1;Parent=Msa0174050;Name=Msa0174050-mRNA-1;_AED=0.15;_eAED=0.15;_QI=309|0.84|1|1|0.92|1|14|318|411
chr1_4 exon 59544480 59544860 59544480 ID=Msa0174050-mRNA-1:exon:18668;Parent=Msa0174050-mRNA-1
chr1_4 exon 59544952 59545038 59544952 ID=Msa0174050-mRNA-1:exon:18669;Parent=Msa0174050-mRNA-1
chr1_4 exon 59547433 59547495 59547433 ID=Msa0174050-mRNA-1:exon:18670;Parent=Msa0174050-mRNA-1
chr1_4 exon 59547614 59547670 59547614 ID=Msa0174050-mRNA-1:exon:18671;Parent=Msa0174050-mRNA-1
chr1_4 exon 59548378 59548507 59548378 ID=Msa0174050-mRNA-1:exon:18672;Parent=Msa0174050-mRNA-1
chr1_4 exon 59548636 59548703 59548636 ID=Msa0174050-mRNA-1:exon:18673;Parent=Msa0174050-mRNA-1
chr1_4 exon 59548858 59548950 59548858 ID=Msa0174050-mRNA-1:exon:18674;Parent=Msa0174050-mRNA-1
chr1_4 exon 59549065 59549112 59549065 ID=Msa0174050-mRNA-1:exon:18675;Parent=Msa0174050-mRNA-1
chr1_4 exon 59549520 59549687 59549520 ID=Msa0174050-mRNA-1:exon:18676;Parent=Msa0174050-mRNA-1
chr1_4 exon 59550002 59550112 59550002 ID=Msa0174050-mRNA-1:exon:18677;Parent=Msa0174050-mRNA-1
chr1_4 exon 59551175 59551270 59551175 ID=Msa0174050-mRNA-1:exon:18678;Parent=Msa0174050-mRNA-1
chr1_4 exon 59551389 59551460 59551389 ID=Msa0174050-mRNA-1:exon:18679;Parent=Msa0174050-mRNA-1
chr1_4 exon 59551605 59551665 59551605 ID=Msa0174050-mRNA-1:exon:18680;Parent=Msa0174050-mRNA-1
chr1_4 exon 59552146 59552573 59552146 ID=Msa0174050-mRNA-1:exon:18681;Parent=Msa0174050-mRNA-1
chr1_4 five_prime_UTR 59544480 59544788 59544480 ID=Msa0174050-mRNA-1:five_prime_utr;Parent=Msa0174050-mRNA-1
chr1_4 CDS 59544789 59544860 59544789 ID=Msa0174050-mRNA-1:cds;Parent=Msa0174050-mRNA-1
chr1_4 CDS 59544952 59545038 59544952 ID=Msa0174050-mRNA-1:cds;Parent=Msa0174050-mRNA-1
chr1_4 CDS 59547433 59547495 59547433 ID=Msa0174050-mRNA-1:cds;Parent=Msa0174050-mRNA-1
chr1_4 CDS 59547614 59547670 59547614 ID=Msa0174050-mRNA-1:cds;Parent=Msa0174050-mRNA-1
chr1_4 CDS 59548378 59548507 59548378 ID=Msa0174050-mRNA-1:cds;Parent=Msa0174050-mRNA-1
chr1_4 CDS 59548636 59548703 59548636 ID=Msa0174050-mRNA-1:cds;Parent=Msa0174050-mRNA-1
chr1_4 CDS 59548858 59548950 59548858 ID=Msa0174050-mRNA-1:cds;Parent=Msa0174050-mRNA-1
chr1_4 CDS 59549065 59549112 59549065 ID=Msa0174050-mRNA-1:cds;Parent=Msa0174050-mRNA-1
chr1_4 CDS 59549520 59549687 59549520 ID=Msa0174050-mRNA-1:cds;Parent=Msa0174050-mRNA-1
chr1_4 CDS 59550002 59550112 59550002 ID=Msa0174050-mRNA-1:cds;Parent=Msa0174050-mRNA-1
chr1_4 CDS 59551175 59551270 59551175 ID=Msa0174050-mRNA-1:cds;Parent=Msa0174050-mRNA-1
chr1_4 CDS 59551389 59551460 59551389 ID=Msa0174050-mRNA-1:cds;Parent=Msa0174050-mRNA-1
chr1_4 CDS 59551605 59551665 59551605 ID=Msa0174050-mRNA-1:cds;Parent=Msa0174050-mRNA-1
chr1_4 CDS 59552146 59552255 59552146 ID=Msa0174050-mRNA-1:cds;Parent=Msa0174050-mRNA-1
chr1_4 three_prime_UTR 59552256 59552573 59552256 ID=Msa0174050-mRNA-1:three_prime_utr;Parent=Msa0174050-mRNA-1
Gene Sequence

>Msa0174050

ATGGATGTGAAAAATATCCTTGGAGGATTACCCAATTTTTCCTTCCCACTTCAGGAGAAGAATTCTAGCGAGGTGTATGCACTTACTGGTGGATTTGCACCTCTTATGCCAGCAGTTGATTTGTCTCTGTTGAGAAAAAAGCCTCCTTCAGACAAAAAGCAGATTCAAATTGTAAATGGTGTTCCACCAACAGGGGACTATTCTTTTGCCAAGTATAACAAGTCTGTTGACATAACAAGATACACGGACGAGGAGTATGAGAAATATTTGGCAAATCCTAAATGGACCAAGGAGGAAACAGATCAACTGTTTGACTTGTGTGAGAGGTTTAATCTCCGATTTATTGTTATAGCTGATAGGTTCCCTTCATCTCGAACTGTTGAAGAATTGAAGGATCGATATTATAGTGTATCCCGGGCTATGTTAATTGCCAGGAATCCATCTTCTACGGATGTTGCAGTGGATCCACTTGTTCAGGAACCATATAACGTTTCACAGGAGATGGAGCGGAAACGAGCTCAGTCCCTGATCCTCTCTCAAACAAAGCAACAAGAGCGAAGAGATGAAGAGGTGCTTGCCGAAGCAAAAAGAATTGCTGAATTACGCATAACGACCAAGGTTGCCCGAGAGTCTGAGTTGGATGTTGCTTCAAAGGCTTGTGCAAACGTTACAGAGAGGGCCAACCCCGGTGAAACTGTATCTCCATCAAATACAGAACTTCCACCAATAGTCGTGCCTTCCATGATATCGACAGATAATGCATCTACCATAGCCTCTCTTCGCATGCTTTATGTCTATTCAAGAACCTATGCACTTGGACAAATGGTGCAATCTGCAAGCTCATCAGCTGGACTTCGGACTATCAAACGTGTTGATCAAACTTTGCTGGAACTTGGGGTCAATTTGAAACCAAGGGTTCCAACAAAAGCTGTTTGTGCAGAGCATCTAGAACTAAGAAATGAAATACTAACCTTGCTGAATCTTCAGAAACAGCTGCAAAATAAGGAGGCTGAAGGTTCATCTTTTCGTGACGGGTCACACTGCGAAACAACGGGAACACCAAAGCGTTTGCATCGAGGCGGAGATCAGGATCTGACATTTGTTCCAGATAACACAAGTTCTGGGGGTGGCAACCGGAATGGTGTTGCGATTTGTAGTGCTCTTTTGATAGGAATAATGAATCTTGTAGTAAGCAGCAGCGAACTCAAAACTCCTGGCAGTTCTGATTGTGGTTAG

Protein sequence

>Msa0174050

MDVKNILGGLPNFSFPLQEKNSSEVYALTGGFAPLMPAVDLSLLRKKPPSDKKQIQIVNGVPPTGDYSFAKYNKSVDITRYTDEEYEKYLANPKWTKEETDQLFDLCERFNLRFIVIADRFPSSRTVEELKDRYYSVSRAMLIARNPSSTDVAVDPLVQEPYNVSQEMERKRAQSLILSQTKQQERRDEEVLAEAKRIAELRITTKVARESELDVASKACANVTERANPGETVSPSNTELPPIVVPSMISTDNASTIASLRMLYVYSRTYALGQMVQSASSSAGLRTIKRVDQTLLELGVNLKPRVPTKAVCAEHLELRNEILTLLNLQKQLQNKEAEGSSFRDGSHCETTGTPKRLHRGGDQDLTFVPDNTSSGGGNRNGVAICSALLIGIMNLVVSSSELKTPGSSDCG*