AlfalfaGEDB | Msa0174050

M. sativa cultivar zhongmu-4 / Msa0174050

KEGG: K11324
GO: GO:0000122 GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0000981 GO:0001085 GO:0001103 GO:0003674 GO:0003700 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0034641 GO:0035267 GO:0036211 GO:0042306 GO:0042307 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045892 GO:0045934 GO:0046483 GO:0046822 GO:0046824 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051049 GO:0051050 GO:0051171 GO:0051172 GO:0051222 GO:0051223 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070491 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0090316 GO:0097346 GO:0140110 GO:1900180 GO:1900182 GO:1901360 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904949 GO:1904951 GO:1990234 GO:2000112 GO:2000113 GO:2001141
PFAM: PF16282.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0174050	sp\|Q8VZL6\|SWC4_ARATH	55.556	414	133	9	2	376	5	406	3.99e-146	425

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0174050	G7ICU5	86.742	445	16	2	1	402	1	445	0.0	766

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TFs/TRs:

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Gene ID	Type	Classification
Msa0174050	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0081730	Msa0174050	0.812199	4.781741e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0174050	MtrunA17_Chr1g0194351	91.436	397	13	1	1	376	1	397	0.0	734
Msa0174050	MtrunA17_Chr7g0270251	64.891	413	96	5	1	376	1	401	0.0	516

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0174050	AT2G47210.3	55.556	414	133	9	2	376	5	406	4.06e-147	425
Msa0174050	AT2G47210.1	55.556	414	133	9	2	376	5	406	4.06e-147	425
Msa0174050	AT2G47210.2	55.556	414	133	9	2	376	5	406	4.06e-147	425

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Find 135 sgRNAs with CRISPR-Local

Find 562 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATAGTCCCCTGTTGG+TGG	0.572554	1_4:-59547457	None:intergenic
AAAGCCTCCTTCAGACAAAA+AGG	0.356170	1_4:+59545017	Msa0174050:CDS
AAATCAAAATCATCAACTAA+AGG	0.456338	1_4:+59544685	Msa0174050:five_prime_UTR
AAATCAACTGCTGGCATAAG+AGG	0.458830	1_4:-59544979	None:intergenic
AAATGGTGTTCCACCAACAG+GGG	0.698079	1_4:+59547447	Msa0174050:CDS
AACAGAGACAAATCAACTGC+TGG	0.529934	1_4:-59544988	None:intergenic
AACATCCAACTCAGACTCTC+GGG	0.521677	1_4:-59549524	None:intergenic
AACCTATGCACTTGGACAAA+TGG	0.426661	1_4:+59550019	Msa0174050:CDS
AACTGTTTGACTTGTGTGAG+AGG	0.559257	1_4:+59548403	Msa0174050:CDS
AATAAAGTTCACTTCCTCTG+TGG	0.589152	1_4:-59552339	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAAACCCTAGATATTTCCA+TGG	+	chr1_4:59544770-59544789	Msa0174050:exon	30.0%
ATGGATGTGAAAAATATCCT+TGG	+	chr1_4:59544789-59544808	Msa0174050:CDS	30.0%
AACAAAATTAGAGTCGGAAA+CGG	+	chr1_4:59545112-59545131	Msa0174050:intron	30.0%
CATATAAAAAAAACAAGGGC+CGG	+	chr1_4:59545221-59545240	Msa0174050:intron	30.0%
GATATACAACATGTCAAGTT+TGG	+	chr1_4:59545294-59545313	Msa0174050:intron	30.0%
AACAGAATCTATATCCTATG+GGG	-	chr1_4:59545414-59545433	None:intergenic	30.0%
CAAACAGAATCTATATCCTA+TGG	-	chr1_4:59545416-59545435	None:intergenic	30.0%
CATAGGATATAGATTCTGTT+TGG	+	chr1_4:59545414-59545433	Msa0174050:intron	30.0%
TTCATTGAATAACAGGTATC+TGG	-	chr1_4:59545701-59545720	None:intergenic	30.0%
ATAAGTTGTTCTTTGGTACT+TGG	+	chr1_4:59545922-59545941	Msa0174050:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	59544480	59552573	59544480	ID=Msa0174050;Name=Msa0174050
chr1_4	mRNA	59544480	59552573	59544480	ID=Msa0174050-mRNA-1;Parent=Msa0174050;Name=Msa0174050-mRNA-1;_AED=0.15;_eAED=0.15;_QI=309\|0.84\|1\|1\|0.92\|1\|14\|318\|411
chr1_4	exon	59544480	59544860	59544480	ID=Msa0174050-mRNA-1:exon:18668;Parent=Msa0174050-mRNA-1
chr1_4	exon	59544952	59545038	59544952	ID=Msa0174050-mRNA-1:exon:18669;Parent=Msa0174050-mRNA-1
chr1_4	exon	59547433	59547495	59547433	ID=Msa0174050-mRNA-1:exon:18670;Parent=Msa0174050-mRNA-1
chr1_4	exon	59547614	59547670	59547614	ID=Msa0174050-mRNA-1:exon:18671;Parent=Msa0174050-mRNA-1
chr1_4	exon	59548378	59548507	59548378	ID=Msa0174050-mRNA-1:exon:18672;Parent=Msa0174050-mRNA-1
chr1_4	exon	59548636	59548703	59548636	ID=Msa0174050-mRNA-1:exon:18673;Parent=Msa0174050-mRNA-1
chr1_4	exon	59548858	59548950	59548858	ID=Msa0174050-mRNA-1:exon:18674;Parent=Msa0174050-mRNA-1
chr1_4	exon	59549065	59549112	59549065	ID=Msa0174050-mRNA-1:exon:18675;Parent=Msa0174050-mRNA-1
chr1_4	exon	59549520	59549687	59549520	ID=Msa0174050-mRNA-1:exon:18676;Parent=Msa0174050-mRNA-1
chr1_4	exon	59550002	59550112	59550002	ID=Msa0174050-mRNA-1:exon:18677;Parent=Msa0174050-mRNA-1
chr1_4	exon	59551175	59551270	59551175	ID=Msa0174050-mRNA-1:exon:18678;Parent=Msa0174050-mRNA-1
chr1_4	exon	59551389	59551460	59551389	ID=Msa0174050-mRNA-1:exon:18679;Parent=Msa0174050-mRNA-1
chr1_4	exon	59551605	59551665	59551605	ID=Msa0174050-mRNA-1:exon:18680;Parent=Msa0174050-mRNA-1
chr1_4	exon	59552146	59552573	59552146	ID=Msa0174050-mRNA-1:exon:18681;Parent=Msa0174050-mRNA-1
chr1_4	five_prime_UTR	59544480	59544788	59544480	ID=Msa0174050-mRNA-1:five_prime_utr;Parent=Msa0174050-mRNA-1
chr1_4	CDS	59544789	59544860	59544789	ID=Msa0174050-mRNA-1:cds;Parent=Msa0174050-mRNA-1
chr1_4	CDS	59544952	59545038	59544952	ID=Msa0174050-mRNA-1:cds;Parent=Msa0174050-mRNA-1
chr1_4	CDS	59547433	59547495	59547433	ID=Msa0174050-mRNA-1:cds;Parent=Msa0174050-mRNA-1
chr1_4	CDS	59547614	59547670	59547614	ID=Msa0174050-mRNA-1:cds;Parent=Msa0174050-mRNA-1
chr1_4	CDS	59548378	59548507	59548378	ID=Msa0174050-mRNA-1:cds;Parent=Msa0174050-mRNA-1
chr1_4	CDS	59548636	59548703	59548636	ID=Msa0174050-mRNA-1:cds;Parent=Msa0174050-mRNA-1
chr1_4	CDS	59548858	59548950	59548858	ID=Msa0174050-mRNA-1:cds;Parent=Msa0174050-mRNA-1
chr1_4	CDS	59549065	59549112	59549065	ID=Msa0174050-mRNA-1:cds;Parent=Msa0174050-mRNA-1
chr1_4	CDS	59549520	59549687	59549520	ID=Msa0174050-mRNA-1:cds;Parent=Msa0174050-mRNA-1
chr1_4	CDS	59550002	59550112	59550002	ID=Msa0174050-mRNA-1:cds;Parent=Msa0174050-mRNA-1
chr1_4	CDS	59551175	59551270	59551175	ID=Msa0174050-mRNA-1:cds;Parent=Msa0174050-mRNA-1
chr1_4	CDS	59551389	59551460	59551389	ID=Msa0174050-mRNA-1:cds;Parent=Msa0174050-mRNA-1
chr1_4	CDS	59551605	59551665	59551605	ID=Msa0174050-mRNA-1:cds;Parent=Msa0174050-mRNA-1
chr1_4	CDS	59552146	59552255	59552146	ID=Msa0174050-mRNA-1:cds;Parent=Msa0174050-mRNA-1
chr1_4	three_prime_UTR	59552256	59552573	59552256	ID=Msa0174050-mRNA-1:three_prime_utr;Parent=Msa0174050-mRNA-1

Gene Sequence

>Msa0174050

ATGGATGTGAAAAATATCCTTGGAGGATTACCCAATTTTTCCTTCCCACTTCAGGAGAAGAATTCTAGCGAGGTGTATGCACTTACTGGTGGATTTGCACCTCTTATGCCAGCAGTTGATTTGTCTCTGTTGAGAAAAAAGCCTCCTTCAGACAAAAAGCAGATTCAAATTGTAAATGGTGTTCCACCAACAGGGGACTATTCTTTTGCCAAGTATAACAAGTCTGTTGACATAACAAGATACACGGACGAGGAGTATGAGAAATATTTGGCAAATCCTAAATGGACCAAGGAGGAAACAGATCAACTGTTTGACTTGTGTGAGAGGTTTAATCTCCGATTTATTGTTATAGCTGATAGGTTCCCTTCATCTCGAACTGTTGAAGAATTGAAGGATCGATATTATAGTGTATCCCGGGCTATGTTAATTGCCAGGAATCCATCTTCTACGGATGTTGCAGTGGATCCACTTGTTCAGGAACCATATAACGTTTCACAGGAGATGGAGCGGAAACGAGCTCAGTCCCTGATCCTCTCTCAAACAAAGCAACAAGAGCGAAGAGATGAAGAGGTGCTTGCCGAAGCAAAAAGAATTGCTGAATTACGCATAACGACCAAGGTTGCCCGAGAGTCTGAGTTGGATGTTGCTTCAAAGGCTTGTGCAAACGTTACAGAGAGGGCCAACCCCGGTGAAACTGTATCTCCATCAAATACAGAACTTCCACCAATAGTCGTGCCTTCCATGATATCGACAGATAATGCATCTACCATAGCCTCTCTTCGCATGCTTTATGTCTATTCAAGAACCTATGCACTTGGACAAATGGTGCAATCTGCAAGCTCATCAGCTGGACTTCGGACTATCAAACGTGTTGATCAAACTTTGCTGGAACTTGGGGTCAATTTGAAACCAAGGGTTCCAACAAAAGCTGTTTGTGCAGAGCATCTAGAACTAAGAAATGAAATACTAACCTTGCTGAATCTTCAGAAACAGCTGCAAAATAAGGAGGCTGAAGGTTCATCTTTTCGTGACGGGTCACACTGCGAAACAACGGGAACACCAAAGCGTTTGCATCGAGGCGGAGATCAGGATCTGACATTTGTTCCAGATAACACAAGTTCTGGGGGTGGCAACCGGAATGGTGTTGCGATTTGTAGTGCTCTTTTGATAGGAATAATGAATCTTGTAGTAAGCAGCAGCGAACTCAAAACTCCTGGCAGTTCTGATTGTGGTTAG

Protein sequence

>Msa0174050

MDVKNILGGLPNFSFPLQEKNSSEVYALTGGFAPLMPAVDLSLLRKKPPSDKKQIQIVNGVPPTGDYSFAKYNKSVDITRYTDEEYEKYLANPKWTKEETDQLFDLCERFNLRFIVIADRFPSSRTVEELKDRYYSVSRAMLIARNPSSTDVAVDPLVQEPYNVSQEMERKRAQSLILSQTKQQERRDEEVLAEAKRIAELRITTKVARESELDVASKACANVTERANPGETVSPSNTELPPIVVPSMISTDNASTIASLRMLYVYSRTYALGQMVQSASSSAGLRTIKRVDQTLLELGVNLKPRVPTKAVCAEHLELRNEILTLLNLQKQLQNKEAEGSSFRDGSHCETTGTPKRLHRGGDQDLTFVPDNTSSGGGNRNGVAICSALLIGIMNLVVSSSELKTPGSSDCG*