Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082700 | XP_013468329.1 | 98.678 | 227 | 2 | 1 | 1 | 226 | 1 | 227 | 3.23e-156 | 451 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082700 | sp|B9SZB6|ARGJ_RICCO | 72.444 | 225 | 62 | 0 | 1 | 225 | 1 | 225 | 2.44e-110 | 327 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082700 | A0A072VLB2 | 98.678 | 227 | 2 | 1 | 1 | 226 | 1 | 227 | 1.54e-156 | 451 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0082700 | Msa0122630 | 0.804875 | 1.751110e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082700 | MtrunA17_Chr1g0182411 | 98.678 | 227 | 2 | 1 | 1 | 226 | 1 | 227 | 2.97e-160 | 451 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0082700 | AT2G37500.1 | 70.175 | 228 | 61 | 5 | 1 | 225 | 1 | 224 | 5.56e-99 | 296 |
| Msa0082700 | AT2G37500.2 | 76.829 | 164 | 38 | 0 | 62 | 225 | 2 | 165 | 2.59e-81 | 249 |
Find 75 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATACCTTTGACTTTGAATT+TGG | 0.071455 | 1_2:-61564355 | None:intergenic |
| CATTTCTCAGACTGTGTTCT+AGG | 0.216875 | 1_2:-61564278 | None:intergenic |
| AGGACCTTGGGGAAGGAAAA+TGG | 0.263937 | 1_2:-61564528 | None:intergenic |
| ATTGAATCCACTGGTGTAAT+TGG | 0.272665 | 1_2:+61567182 | Msa0082700:CDS |
| TTCAAAGCTGCGGGAATATA+TGG | 0.302267 | 1_2:+61566406 | Msa0082700:CDS |
| ATACCTTTGACTTTGAATTT+GGG | 0.303599 | 1_2:-61564354 | None:intergenic |
| GATTCAATTAATACTTCTTC+GGG | 0.312164 | 1_2:-61567167 | None:intergenic |
| AACTGGCTGAAACTCGCGTT+TGG | 0.341506 | 1_2:+61564062 | Msa0082700:five_prime_UTR |
| GGATTCAATTAATACTTCTT+CGG | 0.346437 | 1_2:-61567168 | None:intergenic |
| GAGTGTGGCAATTGAGTCTT+TGG | 0.352539 | 1_2:+61567755 | Msa0082700:CDS |
| TACAGTATGTTCTAGAGGTC+AGG | 0.353089 | 1_2:-61563996 | None:intergenic |
| AAGTTGTTGAGAAGTGAAAA+TGG | 0.365741 | 1_2:-61564330 | None:intergenic |
| GACCTGCTTCCAAGGACCTT+GGG | 0.370325 | 1_2:-61564540 | None:intergenic |
| ACTGGCTGAAACTCGCGTTT+GGG | 0.390085 | 1_2:+61564063 | Msa0082700:five_prime_UTR |
| AGAGGTCAGGGAAGCAAGAT+TGG | 0.396326 | 1_2:-61563983 | None:intergenic |
| TGTGAGCTTAAGTGTATGTT+TGG | 0.406973 | 1_2:-61564102 | None:intergenic |
| ACAAGCTGTAGGCTAGGAAA+TGG | 0.426810 | 1_2:+61564147 | Msa0082700:five_prime_UTR |
| AGTTAGTGAATTCACTAGTA+AGG | 0.428403 | 1_2:-61567412 | None:intergenic |
| TCTTATCTCCAGGGTGAAGC+AGG | 0.434230 | 1_2:+61566993 | Msa0082700:intron |
| TGAAAGCTAACCTGCAGATA+TGG | 0.439584 | 1_2:-61566488 | None:intergenic |
| CTCAGACTGTGTTCTAGGGT+TGG | 0.462786 | 1_2:-61564273 | None:intergenic |
| GGACCTTGGGGAAGGAAAAT+GGG | 0.467500 | 1_2:-61564527 | None:intergenic |
| GGAAGGAAAATGGGAGCAGC+AGG | 0.480592 | 1_2:-61564518 | None:intergenic |
| TCCCCAAGGTCCTTGGAAGC+AGG | 0.489414 | 1_2:+61564538 | Msa0082700:CDS |
| TAGAAAATGACCTGCTTCCA+AGG | 0.496506 | 1_2:-61564548 | None:intergenic |
| CTCTAGAACATACTGTAGCT+TGG | 0.497378 | 1_2:+61564002 | Msa0082700:five_prime_UTR |
| TGACCTGCTTCCAAGGACCT+TGG | 0.498551 | 1_2:-61564541 | None:intergenic |
| CATGTGACAAGTGCAAGATC+AGG | 0.502061 | 1_2:-61566454 | None:intergenic |
| GAGGTCAGGGAAGCAAGATT+GGG | 0.514827 | 1_2:-61563982 | None:intergenic |
| GCAGAGGGTTTCAAAGCTGC+GGG | 0.523037 | 1_2:+61566397 | Msa0082700:CDS |
| ATTTCTCAGACTGTGTTCTA+GGG | 0.523947 | 1_2:-61564277 | None:intergenic |
| GGGCGCCAGCGAAAAGTGAA+GGG | 0.526867 | 1_2:+61563917 | None:intergenic |
| TTCACTAACTTCTTCAGATG+AGG | 0.529205 | 1_2:+61567425 | Msa0082700:CDS |
| TACCTTTGACTTTGAATTTG+GGG | 0.529534 | 1_2:-61564353 | None:intergenic |
| GGTGGAGTTACTGCTGCAGA+GGG | 0.537120 | 1_2:+61566382 | Msa0082700:CDS |
| GTTAGTGAATTCACTAGTAA+GGG | 0.537585 | 1_2:-61567411 | None:intergenic |
| TGGGCGCCAGCGAAAAGTGA+AGG | 0.538029 | 1_2:+61563916 | None:intergenic |
| ACAGTATGTTCTAGAGGTCA+GGG | 0.538251 | 1_2:-61563995 | None:intergenic |
| GAAGTATTAATTGAATCCAC+TGG | 0.538453 | 1_2:+61567173 | Msa0082700:CDS |
| TGTTCATAATTTCAGCTACT+GGG | 0.539697 | 1_2:+61567137 | Msa0082700:intron |
| CGTGCTGTGTTAACTAATGC+AGG | 0.543735 | 1_2:+61566762 | Msa0082700:CDS |
| AGGTGGAGTTACTGCTGCAG+AGG | 0.545711 | 1_2:+61566381 | Msa0082700:CDS |
| TTCCCCAAATTCAAAGTCAA+AGG | 0.551177 | 1_2:+61564351 | Msa0082700:CDS |
| TCACTAACTTCTTCAGATGA+GGG | 0.560329 | 1_2:+61567426 | Msa0082700:CDS |
| TGCAGAGGGTTTCAAAGCTG+CGG | 0.561008 | 1_2:+61566396 | Msa0082700:CDS |
| TATGGAGGGTTGCGCGCTGT+AGG | 0.564441 | 1_2:+61566424 | Msa0082700:CDS |
| AATTGGTCAAAGAATAAAGA+AGG | 0.568321 | 1_2:+61567199 | Msa0082700:CDS |
| ACCTGCTTCCAAGGACCTTG+GGG | 0.569998 | 1_2:-61564539 | None:intergenic |
| CAGGGCAGATTCTGCAGCAG+TGG | 0.576520 | 1_2:+61567704 | Msa0082700:intron |
| GCTTCCAAGGACCTTGGGGA+AGG | 0.583623 | 1_2:-61564535 | None:intergenic |
| CTGGCTGAAACTCGCGTTTG+GGG | 0.585042 | 1_2:+61564064 | Msa0082700:five_prime_UTR |
| TGATTGATGACAAGTTGATA+CGG | 0.588339 | 1_2:-61564206 | None:intergenic |
| CCGCGATATGATAGAATGTG+TGG | 0.589545 | 1_2:+61567019 | Msa0082700:CDS |
| TCTTTGACCAATTACACCAG+TGG | 0.593128 | 1_2:-61567189 | None:intergenic |
| AGGGTCATTCACGACTAATG+TGG | 0.596492 | 1_2:+61566577 | Msa0082700:intron |
| CACTAACTTCTTCAGATGAG+GGG | 0.598054 | 1_2:+61567427 | Msa0082700:CDS |
| GGCGCCAGCGAAAAGTGAAG+GGG | 0.598822 | 1_2:+61563918 | None:intergenic |
| AGGTCAAGCAAATGCAGCTA+CGG | 0.604603 | 1_2:+61566782 | Msa0082700:CDS |
| CAAGCTACAGTATGTTCTAG+AGG | 0.604892 | 1_2:-61564001 | None:intergenic |
| TCTGCAGCAGTAACTCCACC+TGG | 0.610983 | 1_2:-61566379 | None:intergenic |
| AAAGCTGCGGGAATATATGG+AGG | 0.611780 | 1_2:+61566409 | Msa0082700:CDS |
| GATGTTGATGCCATATCTGC+AGG | 0.614029 | 1_2:+61566478 | Msa0082700:CDS |
| AAACATACACTTAAGCTCAC+AGG | 0.618541 | 1_2:+61564104 | Msa0082700:five_prime_UTR |
| ATGTGTGGAAAGCCTCGCAA+AGG | 0.627850 | 1_2:+61567034 | Msa0082700:CDS |
| AAATAGTACATACCTTTGCG+AGG | 0.634764 | 1_2:-61567046 | None:intergenic |
| AGAAGCTTGATTCTCCGTAG+TGG | 0.638632 | 1_2:-61564486 | None:intergenic |
| CTTGCTAACAAGATCTGTTG+TGG | 0.651501 | 1_2:-61567733 | None:intergenic |
| CCACACATTCTATCATATCG+CGG | 0.652423 | 1_2:-61567019 | None:intergenic |
| CGCCAGCGAAAAGTGAAGGG+GGG | 0.654795 | 1_2:+61563920 | None:intergenic |
| AGATCTTGTTAGCAAGAGTG+TGG | 0.658285 | 1_2:+61567740 | Msa0082700:CDS |
| GCGCCAGCGAAAAGTGAAGG+GGG | 0.658521 | 1_2:+61563919 | None:intergenic |
| TGAACTTCTCAGATTCCAGG+TGG | 0.661236 | 1_2:+61566364 | Msa0082700:intron |
| GATTCACGCTGTATCCACTA+CGG | 0.662779 | 1_2:+61564472 | Msa0082700:CDS |
| AAGCTGCGGGAATATATGGA+GGG | 0.664937 | 1_2:+61566410 | Msa0082700:CDS |
| AAATGGAGAGAAACGTTGTG+AGG | 0.702976 | 1_2:-61564313 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATATTGTAATTATGTT+AGG | + | chr1_2:61564772-61564791 | Msa0082700:intron | 10.0% |
| !!! | TTAAGTAAATATTTTTTGAT+TGG | + | chr1_2:61566964-61566983 | Msa0082700:intron | 10.0% |
| !!! | TAAGTAAATATTTTTTGATT+GGG | + | chr1_2:61566965-61566984 | Msa0082700:intron | 10.0% |
| !! | AAATGACAAATATAAATTTA+CGG | - | chr1_2:61567361-61567380 | None:intergenic | 10.0% |
| !!! | AAAAAAAACACATTTTAACA+AGG | + | chr1_2:61564035-61564054 | Msa0082700:five_prime_UTR | 15.0% |
| !!! | AAAAAAACACATTTTAACAA+GGG | + | chr1_2:61564036-61564055 | Msa0082700:five_prime_UTR | 15.0% |
| !! | AATTGTCCTATTTATATTAT+AGG | - | chr1_2:61564849-61564868 | None:intergenic | 15.0% |
| !!! | TATCTTGTTTTAGAATTTTT+TGG | + | chr1_2:61565334-61565353 | Msa0082700:intron | 15.0% |
| !!! | TTTAAGCTTTTATATGTATA+TGG | - | chr1_2:61565936-61565955 | None:intergenic | 15.0% |
| !!! | TACATCACAATTTTAAATTT+TGG | + | chr1_2:61566519-61566538 | Msa0082700:intron | 15.0% |
| !!! | ACATCACAATTTTAAATTTT+GGG | + | chr1_2:61566520-61566539 | Msa0082700:intron | 15.0% |
| !! | TCCAATCCTATAATATAAAT+AGG | + | chr1_2:61564840-61564859 | Msa0082700:intron | 20.0% |
| !! | TCCTATTTATATTATAGGAT+TGG | - | chr1_2:61564844-61564863 | None:intergenic | 20.0% |
| !! | TTATACACTACATATTGTAT+AGG | - | chr1_2:61565064-61565083 | None:intergenic | 20.0% |
| !!! | TCTAAGGTGTTTTTTTTTAA+TGG | - | chr1_2:61565223-61565242 | None:intergenic | 20.0% |
| !! | TAACAATGAACTTTGATTAT+TGG | - | chr1_2:61565996-61566015 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTCTTTCACTATT+TGG | - | chr1_2:61566070-61566089 | None:intergenic | 20.0% |
| !!! | AATTTAAAATTGTGATGTAC+AGG | - | chr1_2:61566518-61566537 | None:intergenic | 20.0% |
| !!! | AATTATGAACATTTCTAGTA+AGG | - | chr1_2:61567128-61567147 | None:intergenic | 20.0% |
| !!! | ATATTTGTCATTTTGTTTTC+AGG | + | chr1_2:61567368-61567387 | Msa0082700:intron | 20.0% |
| !!! | TATTTGTCATTTTGTTTTCA+GGG | + | chr1_2:61567369-61567388 | Msa0082700:intron | 20.0% |
| !! | CAATAAATAAGAAACTAAAC+TGG | - | chr1_2:61567597-61567616 | None:intergenic | 20.0% |
| !!! | TGAAAAGTAGAAAAAAGTTT+TGG | - | chr1_2:61567638-61567657 | None:intergenic | 20.0% |
| !!! | TTTTTCTACTTTTCAATCTT+CGG | + | chr1_2:61567643-61567662 | Msa0082700:intron | 20.0% |
| !! | ATACCTTTGACTTTGAATTT+GGG | - | chr1_2:61564357-61564376 | None:intergenic | 25.0% |
| !! | AATACCTTTGACTTTGAATT+TGG | - | chr1_2:61564358-61564377 | None:intergenic | 25.0% |
| ! | AAATCAAGCTAGTTAGAAAA+TGG | + | chr1_2:61564656-61564675 | Msa0082700:intron | 25.0% |
| !! | TATAAGTACTGTAAAAACTC+AGG | - | chr1_2:61564927-61564946 | None:intergenic | 25.0% |
| !!! | TTCAACCACAATTTTGATTT+TGG | + | chr1_2:61565555-61565574 | Msa0082700:intron | 25.0% |
| !!! | ATCCTTAAACTTTGAAATAG+CGG | - | chr1_2:61565885-61565904 | None:intergenic | 25.0% |
| !!! | ACTTATTTGCTTTTTGCATT+GGG | - | chr1_2:61566031-61566050 | None:intergenic | 25.0% |
| !!! | AACTTATTTGCTTTTTGCAT+TGG | - | chr1_2:61566032-61566051 | None:intergenic | 25.0% |
| !! | GCAAAAAGCAAATAAGTTTT+AGG | + | chr1_2:61566034-61566053 | Msa0082700:intron | 25.0% |
| ! | ATGTTGATATGAAATGTTAG+AGG | - | chr1_2:61566252-61566271 | None:intergenic | 25.0% |
| !!! | ACAATTTTAAATTTTGGGTC+TGG | + | chr1_2:61566525-61566544 | Msa0082700:intron | 25.0% |
| !! | ATCAATTTTTGCAATTTGTC+AGG | + | chr1_2:61566737-61566756 | Msa0082700:intron | 25.0% |
| ! | GATTCAATTAATACTTCTTC+GGG | - | chr1_2:61567170-61567189 | None:intergenic | 25.0% |
| ! | GGATTCAATTAATACTTCTT+CGG | - | chr1_2:61567171-61567190 | None:intergenic | 25.0% |
| ! | AATTGGTCAAAGAATAAAGA+AGG | + | chr1_2:61567199-61567218 | Msa0082700:CDS | 25.0% |
| ! | TTGTTTGAATATTTCTCAAG+TGG | - | chr1_2:61567294-61567313 | None:intergenic | 25.0% |
| !!! | ATTTGTCATTTTGTTTTCAG+GGG | + | chr1_2:61567370-61567389 | Msa0082700:intron | 25.0% |
| ! | AGCAAAATATTCATAAATGC+AGG | - | chr1_2:61567458-61567477 | None:intergenic | 25.0% |
| !!! | GAAGTTTTTTTTATTGTGTG+TGG | + | chr1_2:61567514-61567533 | Msa0082700:intron | 25.0% |
| !!! | AAGTAGAAAAAAGTTTTGGT+GGG | - | chr1_2:61567634-61567653 | None:intergenic | 25.0% |
| !!! | AAAGTAGAAAAAAGTTTTGG+TGG | - | chr1_2:61567635-61567654 | None:intergenic | 25.0% |
| !! | CATTTTAACAAGGGTAAAAC+TGG | + | chr1_2:61564045-61564064 | Msa0082700:five_prime_UTR | 30.0% |
| !! | AGCTAATTTTAACAAGCTGT+AGG | + | chr1_2:61564136-61564155 | Msa0082700:five_prime_UTR | 30.0% |
| ! | GAATTTTAGGCAATTTAGTG+CGG | + | chr1_2:61564169-61564188 | Msa0082700:five_prime_UTR | 30.0% |
| !! | TGATTGATGACAAGTTGATA+CGG | - | chr1_2:61564209-61564228 | None:intergenic | 30.0% |
| AAGTTGTTGAGAAGTGAAAA+TGG | - | chr1_2:61564333-61564352 | None:intergenic | 30.0% | |
| ! | TACCTTTGACTTTGAATTTG+GGG | - | chr1_2:61564356-61564375 | None:intergenic | 30.0% |
| ! | AAATCAACTAGTTTGAGCTA+AGG | + | chr1_2:61565119-61565138 | Msa0082700:intron | 30.0% |
| ! | AATCAACTAGTTTGAGCTAA+GGG | + | chr1_2:61565120-61565139 | Msa0082700:intron | 30.0% |
| TGTGTCCAAAATCAAAATTG+TGG | - | chr1_2:61565563-61565582 | None:intergenic | 30.0% | |
| !!! | ATTTTGATTTTGGACACAAG+TGG | + | chr1_2:61565565-61565584 | Msa0082700:intron | 30.0% |
| TTCATCTAAAGAGACAAGTT+TGG | + | chr1_2:61565597-61565616 | Msa0082700:intron | 30.0% | |
| ! | ACAATCTTTTCTATCATCTG+GGG | - | chr1_2:61565640-61565659 | None:intergenic | 30.0% |
| ! | CACAATCTTTTCTATCATCT+GGG | - | chr1_2:61565641-61565660 | None:intergenic | 30.0% |
| CCAAACATAGGTTAATCTAT+GGG | + | chr1_2:61565684-61565703 | Msa0082700:intron | 30.0% | |
| !!! | TATTTTTTGCAGGACAATGT+GGG | + | chr1_2:61565709-61565728 | Msa0082700:intron | 30.0% |
| !! | TATTGTTGTTTGCTAATGGT+TGG | - | chr1_2:61565853-61565872 | None:intergenic | 30.0% |
| ! | ATCCGCTATTTCAAAGTTTA+AGG | + | chr1_2:61565880-61565899 | Msa0082700:intron | 30.0% |
| GAAATTAGATACGTGCATAT+CGG | + | chr1_2:61566096-61566115 | Msa0082700:intron | 30.0% | |
| AAATTAGATACGTGCATATC+GGG | + | chr1_2:61566097-61566116 | Msa0082700:intron | 30.0% | |
| TAAAATTGTGATGTACAGGA+AGG | - | chr1_2:61566514-61566533 | None:intergenic | 30.0% | |
| TCTATCTTGATGAAAAAGCA+AGG | - | chr1_2:61566673-61566692 | None:intergenic | 30.0% | |
| ATAATCAGCATATTGTCTAC+TGG | + | chr1_2:61566853-61566872 | Msa0082700:intron | 30.0% | |
| ATGTTCATAATTTCAGCTAC+TGG | + | chr1_2:61567136-61567155 | Msa0082700:intron | 30.0% | |
| TGTTCATAATTTCAGCTACT+GGG | + | chr1_2:61567137-61567156 | Msa0082700:intron | 30.0% | |
| ! | GAAGTATTAATTGAATCCAC+TGG | + | chr1_2:61567173-61567192 | Msa0082700:CDS | 30.0% |
| !!! | TTTGTCATTTTGTTTTCAGG+GGG | + | chr1_2:61567371-61567390 | Msa0082700:intron | 30.0% |
| GTTAGTGAATTCACTAGTAA+GGG | - | chr1_2:61567414-61567433 | None:intergenic | 30.0% | |
| AGTTAGTGAATTCACTAGTA+AGG | - | chr1_2:61567415-61567434 | None:intergenic | 30.0% | |
| AAACTAAACTGGTGAAAGTA+AGG | - | chr1_2:61567586-61567605 | None:intergenic | 30.0% | |
| TGTGAGCTTAAGTGTATGTT+TGG | - | chr1_2:61564105-61564124 | None:intergenic | 35.0% | |
| AAACATACACTTAAGCTCAC+AGG | + | chr1_2:61564104-61564123 | Msa0082700:five_prime_UTR | 35.0% | |
| !! | ATTTTAACAAGCTGTAGGCT+AGG | + | chr1_2:61564141-61564160 | Msa0082700:five_prime_UTR | 35.0% |
| ! | AGGCTAGGAAATGGAATTTT+AGG | + | chr1_2:61564156-61564175 | Msa0082700:five_prime_UTR | 35.0% |
| ATTTCTCAGACTGTGTTCTA+GGG | - | chr1_2:61564280-61564299 | None:intergenic | 35.0% | |
| TTCCCCAAATTCAAAGTCAA+AGG | + | chr1_2:61564351-61564370 | Msa0082700:CDS | 35.0% | |
| AAAGTAACGAAAGAAGAGGA+AGG | - | chr1_2:61564585-61564604 | None:intergenic | 35.0% | |
| GAGTAAAGTAACGAAAGAAG+AGG | - | chr1_2:61564589-61564608 | None:intergenic | 35.0% | |
| CATTGTGTGTTTCATGTACA+AGG | - | chr1_2:61564873-61564892 | None:intergenic | 35.0% | |
| AGTACTGTAAAAACTCAGGA+AGG | - | chr1_2:61564923-61564942 | None:intergenic | 35.0% | |
| ATAACACACCTTAAACACTC+TGG | + | chr1_2:61565080-61565099 | Msa0082700:intron | 35.0% | |
| TAACACACCTTAAACACTCT+GGG | + | chr1_2:61565081-61565100 | Msa0082700:intron | 35.0% | |
| !!! | GTTAGTTTTTTCTCCTTGAC+AGG | - | chr1_2:61565175-61565194 | None:intergenic | 35.0% |
| ! | GCACAATCTTTTCTATCATC+TGG | - | chr1_2:61565642-61565661 | None:intergenic | 35.0% |
| ! | CCAGGAGGTACATAAAATTA+GGG | - | chr1_2:61565664-61565683 | None:intergenic | 35.0% |
| GCCAAACATAGGTTAATCTA+TGG | + | chr1_2:61565683-61565702 | Msa0082700:intron | 35.0% | |
| CCCATAGATTAACCTATGTT+TGG | - | chr1_2:61565687-61565706 | None:intergenic | 35.0% | |
| !!! | TCTATGGGTCTATTTTTTGC+AGG | + | chr1_2:61565699-61565718 | Msa0082700:intron | 35.0% |
| !!! | CTATTTTTTGCAGGACAATG+TGG | + | chr1_2:61565708-61565727 | Msa0082700:intron | 35.0% |
| !! | CCACTATTGTTGTTTGCTAA+TGG | - | chr1_2:61565857-61565876 | None:intergenic | 35.0% |
| CCATTAGCAAACAACAATAG+TGG | + | chr1_2:61565854-61565873 | Msa0082700:intron | 35.0% | |
| AATTAGATACGTGCATATCG+GGG | + | chr1_2:61566098-61566117 | Msa0082700:intron | 35.0% | |
| AAAAACAGAGCTGAACATTC+TGG | - | chr1_2:61566322-61566341 | None:intergenic | 35.0% | |
| ! | TTTTGAACTTCTCAGATTCC+AGG | + | chr1_2:61566361-61566380 | Msa0082700:intron | 35.0% |
| TATGTGACCAGATTTCTTTC+AGG | + | chr1_2:61566557-61566576 | Msa0082700:intron | 35.0% | |
| ATGTGACCAGATTTCTTTCA+GGG | + | chr1_2:61566558-61566577 | Msa0082700:intron | 35.0% | |
| TTCCTATTTCATGTGCATGT+GGG | + | chr1_2:61566821-61566840 | Msa0082700:intron | 35.0% | |
| ACTGGAGTTTAGATTTACTG+TGG | + | chr1_2:61566871-61566890 | Msa0082700:intron | 35.0% | |
| AAATAGTACATACCTTTGCG+AGG | - | chr1_2:61567049-61567068 | None:intergenic | 35.0% | |
| ! | TTTCAACATGGAGCACTATA+AGG | - | chr1_2:61567092-61567111 | None:intergenic | 35.0% |
| TTATAGTGCTCCATGTTGAA+AGG | + | chr1_2:61567091-61567110 | Msa0082700:intron | 35.0% | |
| TATAGTGCTCCATGTTGAAA+GGG | + | chr1_2:61567092-61567111 | Msa0082700:intron | 35.0% | |
| ATTGAATCCACTGGTGTAAT+TGG | + | chr1_2:61567182-61567201 | Msa0082700:CDS | 35.0% | |
| TTCACTAACTTCTTCAGATG+AGG | + | chr1_2:61567425-61567444 | Msa0082700:CDS | 35.0% | |
| TCACTAACTTCTTCAGATGA+GGG | + | chr1_2:61567426-61567445 | Msa0082700:CDS | 35.0% | |
| AAGCTTATTTGTCTGCATAC+AGG | + | chr1_2:61567685-61567704 | Msa0082700:intron | 35.0% | |
| AGCTTATTTGTCTGCATACA+GGG | + | chr1_2:61567686-61567705 | Msa0082700:intron | 35.0% | |
| !! | ACAGTATGTTCTAGAGGTCA+GGG | - | chr1_2:61563998-61564017 | None:intergenic | 40.0% |
| !! | TACAGTATGTTCTAGAGGTC+AGG | - | chr1_2:61563999-61564018 | None:intergenic | 40.0% |
| CAAGCTACAGTATGTTCTAG+AGG | - | chr1_2:61564004-61564023 | None:intergenic | 40.0% | |
| !! | CTCTAGAACATACTGTAGCT+TGG | + | chr1_2:61564002-61564021 | Msa0082700:five_prime_UTR | 40.0% |
| CATTTCTCAGACTGTGTTCT+AGG | - | chr1_2:61564281-61564300 | None:intergenic | 40.0% | |
| AAATGGAGAGAAACGTTGTG+AGG | - | chr1_2:61564316-61564335 | None:intergenic | 40.0% | |
| TAGAAAATGACCTGCTTCCA+AGG | - | chr1_2:61564551-61564570 | None:intergenic | 40.0% | |
| ! | ACTAGTTTGAGCTAAGGGTT+AGG | + | chr1_2:61565125-61565144 | Msa0082700:intron | 40.0% |
| CTAGTTTGAGCTAAGGGTTA+GGG | + | chr1_2:61565126-61565145 | Msa0082700:intron | 40.0% | |
| ! | GGTTGAAGTCTAGCATCTTT+TGG | - | chr1_2:61565542-61565561 | None:intergenic | 40.0% |
| TTGGACACAAGTGGTTAATG+TGG | + | chr1_2:61565574-61565593 | Msa0082700:intron | 40.0% | |
| ! | CCCTAATTTTATGTACCTCC+TGG | + | chr1_2:61565661-61565680 | Msa0082700:intron | 40.0% |
| ! | GCCAGGAGGTACATAAAATT+AGG | - | chr1_2:61565665-61565684 | None:intergenic | 40.0% |
| AGATTAACCTATGTTTGGCC+AGG | - | chr1_2:61565682-61565701 | None:intergenic | 40.0% | |
| AACACAACCAGTGTAGTCAA+TGG | + | chr1_2:61565817-61565836 | Msa0082700:intron | 40.0% | |
| !! | CGTTGTGCTGCACTTTTTAA+TGG | - | chr1_2:61566153-61566172 | None:intergenic | 40.0% |
| ! | TTAAAAAGTGCAGCACAACG+AGG | + | chr1_2:61566153-61566172 | Msa0082700:intron | 40.0% |
| TTCAAAGCTGCGGGAATATA+TGG | + | chr1_2:61566406-61566425 | Msa0082700:CDS | 40.0% | |
| TGAAAGCTAACCTGCAGATA+TGG | - | chr1_2:61566491-61566510 | None:intergenic | 40.0% | |
| GAATGACCCTGAAAGAAATC+TGG | - | chr1_2:61566567-61566586 | None:intergenic | 40.0% | |
| ! | GTGCTTTTGCAGTATAACAC+AGG | - | chr1_2:61566614-61566633 | None:intergenic | 40.0% |
| CAATGCATTCAGTACAAGCT+CGG | - | chr1_2:61566697-61566716 | None:intergenic | 40.0% | |
| CTTCCTATTTCATGTGCATG+TGG | + | chr1_2:61566820-61566839 | Msa0082700:intron | 40.0% | |
| CCACACATTCTATCATATCG+CGG | - | chr1_2:61567022-61567041 | None:intergenic | 40.0% | |
| TTGCACAAACCCTTTCAACA+TGG | - | chr1_2:61567104-61567123 | None:intergenic | 40.0% | |
| TCTTTGACCAATTACACCAG+TGG | - | chr1_2:61567192-61567211 | None:intergenic | 40.0% | |
| ATCAGAGGATACAAGCACAT+AGG | - | chr1_2:61567259-61567278 | None:intergenic | 40.0% | |
| ! | TTTCTCAAGTGGCTTGTCAA+TGG | - | chr1_2:61567283-61567302 | None:intergenic | 40.0% |
| CACTAACTTCTTCAGATGAG+GGG | + | chr1_2:61567427-61567446 | Msa0082700:CDS | 40.0% | |
| CTTGCTAACAAGATCTGTTG+TGG | - | chr1_2:61567736-61567755 | None:intergenic | 40.0% | |
| AGATCTTGTTAGCAAGAGTG+TGG | + | chr1_2:61567740-61567759 | Msa0082700:CDS | 40.0% | |
| ACAAGCTGTAGGCTAGGAAA+TGG | + | chr1_2:61564147-61564166 | Msa0082700:five_prime_UTR | 45.0% | |
| GATTCACGCTGTATCCACTA+CGG | + | chr1_2:61564472-61564491 | Msa0082700:CDS | 45.0% | |
| AGAAGCTTGATTCTCCGTAG+TGG | - | chr1_2:61564489-61564508 | None:intergenic | 45.0% | |
| ! | GCTGACTTAGCTTCAGATTG+AGG | - | chr1_2:61564978-61564997 | None:intergenic | 45.0% |
| AGCTCTTAGACAGACACCTT+TGG | + | chr1_2:61565018-61565037 | Msa0082700:intron | 45.0% | |
| GCTCTTAGACAGACACCTTT+GGG | + | chr1_2:61565019-61565038 | Msa0082700:intron | 45.0% | |
| !! | AGACAGACACCTTTGGGATT+AGG | + | chr1_2:61565025-61565044 | Msa0082700:intron | 45.0% |
| ATACACACGCCTAATCCCAA+AGG | - | chr1_2:61565037-61565056 | None:intergenic | 45.0% | |
| ACACCTTAAACACTCTGGGT+GGG | + | chr1_2:61565085-61565104 | Msa0082700:intron | 45.0% | |
| ! | TTAAACACTCTGGGTGGGTT+GGG | + | chr1_2:61565090-61565109 | Msa0082700:intron | 45.0% |
| TGAGCTAAGGGTTAGGGATT+TGG | + | chr1_2:61565132-61565151 | Msa0082700:intron | 45.0% | |
| TCAACGTGTTTGTGTCGTGT+CGG | + | chr1_2:61565442-61565461 | Msa0082700:intron | 45.0% | |
| GTCGGATGTTTGTGCTTCAT+AGG | + | chr1_2:61565460-61565479 | Msa0082700:intron | 45.0% | |
| TTAACCTATGTTTGGCCAGG+AGG | - | chr1_2:61565679-61565698 | None:intergenic | 45.0% | |
| ACAACCAGTGTAGTCAATGG+TGG | + | chr1_2:61565820-61565839 | Msa0082700:intron | 45.0% | |
| ! | CTATCCACCATTGACTACAC+TGG | - | chr1_2:61565827-61565846 | None:intergenic | 45.0% |
| !! | GTGTAGTCAATGGTGGATAG+TGG | + | chr1_2:61565827-61565846 | Msa0082700:intron | 45.0% |
| ! | AGCACAACGAGGTTTTGCAT+GGG | + | chr1_2:61566164-61566183 | Msa0082700:intron | 45.0% |
| GTCAATAGCAGCCACTATAG+TGG | - | chr1_2:61566218-61566237 | None:intergenic | 45.0% | |
| TGAACTTCTCAGATTCCAGG+TGG | + | chr1_2:61566364-61566383 | Msa0082700:intron | 45.0% | |
| AAAGCTGCGGGAATATATGG+AGG | + | chr1_2:61566409-61566428 | Msa0082700:CDS | 45.0% | |
| AAGCTGCGGGAATATATGGA+GGG | + | chr1_2:61566410-61566429 | Msa0082700:CDS | 45.0% | |
| CATGTGACAAGTGCAAGATC+AGG | - | chr1_2:61566457-61566476 | None:intergenic | 45.0% | |
| GATGTTGATGCCATATCTGC+AGG | + | chr1_2:61566478-61566497 | Msa0082700:CDS | 45.0% | |
| AGGGTCATTCACGACTAATG+TGG | + | chr1_2:61566577-61566596 | Msa0082700:intron | 45.0% | |
| CGTGCTGTGTTAACTAATGC+AGG | + | chr1_2:61566762-61566781 | Msa0082700:CDS | 45.0% | |
| AGGTCAAGCAAATGCAGCTA+CGG | + | chr1_2:61566782-61566801 | Msa0082700:CDS | 45.0% | |
| AGCCCACATGCACATGAAAT+AGG | - | chr1_2:61566826-61566845 | None:intergenic | 45.0% | |
| TTGGGTCCTTTCTTATCTCC+AGG | + | chr1_2:61566983-61567002 | Msa0082700:intron | 45.0% | |
| TGGGTCCTTTCTTATCTCCA+GGG | + | chr1_2:61566984-61567003 | Msa0082700:intron | 45.0% | |
| CTTCACCCTGGAGATAAGAA+AGG | - | chr1_2:61566992-61567011 | None:intergenic | 45.0% | |
| CCGCGATATGATAGAATGTG+TGG | + | chr1_2:61567019-61567038 | Msa0082700:CDS | 45.0% | |
| ! | TGGCTTGTCAATGGAATCAG+AGG | - | chr1_2:61567274-61567293 | None:intergenic | 45.0% |
| GAGGTCAGGGAAGCAAGATT+GGG | - | chr1_2:61563985-61564004 | None:intergenic | 50.0% | |
| AGAGGTCAGGGAAGCAAGAT+TGG | - | chr1_2:61563986-61564005 | None:intergenic | 50.0% | |
| AACTGGCTGAAACTCGCGTT+TGG | + | chr1_2:61564062-61564081 | Msa0082700:five_prime_UTR | 50.0% | |
| ACTGGCTGAAACTCGCGTTT+GGG | + | chr1_2:61564063-61564082 | Msa0082700:five_prime_UTR | 50.0% | |
| !! | CTCAGACTGTGTTCTAGGGT+TGG | - | chr1_2:61564276-61564295 | None:intergenic | 50.0% |
| CGTGAAGCAAACATCTGCAG+AGG | - | chr1_2:61564443-61564462 | None:intergenic | 50.0% | |
| GGACCTTGGGGAAGGAAAAT+GGG | - | chr1_2:61564530-61564549 | None:intergenic | 50.0% | |
| AGGACCTTGGGGAAGGAAAA+TGG | - | chr1_2:61564531-61564550 | None:intergenic | 50.0% | |
| ! | TTTTCCTTCCCCAAGGTCCT+TGG | + | chr1_2:61564531-61564550 | Msa0082700:CDS | 50.0% |
| CACACCTTAAACACTCTGGG+TGG | + | chr1_2:61565084-61565103 | Msa0082700:intron | 50.0% | |
| ! | CAACCCACCCAGAGTGTTTA+AGG | - | chr1_2:61565091-61565110 | None:intergenic | 50.0% |
| CTTAAACACTCTGGGTGGGT+TGG | + | chr1_2:61565089-61565108 | Msa0082700:intron | 50.0% | |
| GCTAAGGGTTAGGGATTTGG+AGG | + | chr1_2:61565135-61565154 | Msa0082700:intron | 50.0% | |
| GTTAGGGATTTGGAGGTCCA+GGG | + | chr1_2:61565142-61565161 | Msa0082700:intron | 50.0% | |
| ! | ACGTGTCTGTGGAGTGTCTA+AGG | - | chr1_2:61565239-61565258 | None:intergenic | 50.0% |
| ! | ATGTGTCTGAGACGTGTCTG+TGG | - | chr1_2:61565250-61565269 | None:intergenic | 50.0% |
| TGTACCTCCTGGCCAAACAT+AGG | + | chr1_2:61565672-61565691 | Msa0082700:intron | 50.0% | |
| ! | CAGCACAACGAGGTTTTGCA+TGG | + | chr1_2:61566163-61566182 | Msa0082700:intron | 50.0% |
| ! | AGGTTTTGCATGGGAGCCTA+TGG | + | chr1_2:61566173-61566192 | Msa0082700:intron | 50.0% |
| ! | GGTTTTGCATGGGAGCCTAT+GGG | + | chr1_2:61566174-61566193 | Msa0082700:intron | 50.0% |
| TGCAGAGGGTTTCAAAGCTG+CGG | + | chr1_2:61566396-61566415 | Msa0082700:CDS | 50.0% | |
| CAAGCAAATGCAGCTACGGT+AGG | + | chr1_2:61566786-61566805 | Msa0082700:intron | 50.0% | |
| TCTTATCTCCAGGGTGAAGC+AGG | + | chr1_2:61566993-61567012 | Msa0082700:intron | 50.0% | |
| ATGTGTGGAAAGCCTCGCAA+AGG | + | chr1_2:61567034-61567053 | Msa0082700:CDS | 50.0% | |
| CTGGCTGAAACTCGCGTTTG+GGG | + | chr1_2:61564064-61564083 | Msa0082700:five_prime_UTR | 55.0% | |
| GGAAGGAAAATGGGAGCAGC+AGG | - | chr1_2:61564521-61564540 | None:intergenic | 55.0% | |
| ! | GCTCCCATTTTCCTTCCCCA+AGG | + | chr1_2:61564524-61564543 | Msa0082700:CDS | 55.0% |
| ACCTGCTTCCAAGGACCTTG+GGG | - | chr1_2:61564542-61564561 | None:intergenic | 55.0% | |
| GACCTGCTTCCAAGGACCTT+GGG | - | chr1_2:61564543-61564562 | None:intergenic | 55.0% | |
| TGACCTGCTTCCAAGGACCT+TGG | - | chr1_2:61564544-61564563 | None:intergenic | 55.0% | |
| GGTTAGGGATTTGGAGGTCC+AGG | + | chr1_2:61565141-61565160 | Msa0082700:intron | 55.0% | |
| CCTTGACAGGACTTGAACCC+TGG | - | chr1_2:61565162-61565181 | None:intergenic | 55.0% | |
| CCAGGGTTCAAGTCCTGTCA+AGG | + | chr1_2:61565159-61565178 | Msa0082700:intron | 55.0% | |
| TGCACAGCATAGCAGCCCAT+AGG | - | chr1_2:61566192-61566211 | None:intergenic | 55.0% | |
| GCTGTGCAACGCCACTATAG+TGG | + | chr1_2:61566204-61566223 | Msa0082700:intron | 55.0% | |
| TCTGCAGCAGTAACTCCACC+TGG | - | chr1_2:61566382-61566401 | None:intergenic | 55.0% | |
| AGGTGGAGTTACTGCTGCAG+AGG | + | chr1_2:61566381-61566400 | Msa0082700:CDS | 55.0% | |
| GGTGGAGTTACTGCTGCAGA+GGG | + | chr1_2:61566382-61566401 | Msa0082700:CDS | 55.0% | |
| GCAGAGGGTTTCAAAGCTGC+GGG | + | chr1_2:61566397-61566416 | Msa0082700:CDS | 55.0% | |
| GCTTCCAAGGACCTTGGGGA+AGG | - | chr1_2:61564538-61564557 | None:intergenic | 60.0% | |
| TCCCCAAGGTCCTTGGAAGC+AGG | + | chr1_2:61564538-61564557 | Msa0082700:CDS | 60.0% | |
| TATGGAGGGTTGCGCGCTGT+AGG | + | chr1_2:61566424-61566443 | Msa0082700:CDS | 60.0% | |
| CAGGGCAGATTCTGCAGCAG+TGG | + | chr1_2:61567704-61567723 | Msa0082700:intron | 60.0% | |
| CTGGGGTCAAACTCGCGCAG+CGG | - | chr1_2:61565623-61565642 | None:intergenic | 65.0% | |
| CGCGGTAACCTGCTTCACCC+TGG | - | chr1_2:61567004-61567023 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 61563927 | 61567776 | 61563927 | ID=Msa0082700;Name=Msa0082700 |
| chr1_2 | mRNA | 61563927 | 61567776 | 61563927 | ID=Msa0082700-mRNA-1;Parent=Msa0082700;Name=Msa0082700-mRNA-1;_AED=0.01;_eAED=0.01;_QI=371|1|0.88|1|1|1|9|0|226 |
| chr1_2 | exon | 61563927 | 61564372 | 61563927 | ID=Msa0082700-mRNA-1:exon:20343;Parent=Msa0082700-mRNA-1 |
| chr1_2 | exon | 61564449 | 61564559 | 61564449 | ID=Msa0082700-mRNA-1:exon:20344;Parent=Msa0082700-mRNA-1 |
| chr1_2 | exon | 61566376 | 61566499 | 61566376 | ID=Msa0082700-mRNA-1:exon:20345;Parent=Msa0082700-mRNA-1 |
| chr1_2 | exon | 61566579 | 61566652 | 61566579 | ID=Msa0082700-mRNA-1:exon:20346;Parent=Msa0082700-mRNA-1 |
| chr1_2 | exon | 61566759 | 61566803 | 61566759 | ID=Msa0082700-mRNA-1:exon:20347;Parent=Msa0082700-mRNA-1 |
| chr1_2 | exon | 61567005 | 61567055 | 61567005 | ID=Msa0082700-mRNA-1:exon:20348;Parent=Msa0082700-mRNA-1 |
| chr1_2 | exon | 61567152 | 61567220 | 61567152 | ID=Msa0082700-mRNA-1:exon:20349;Parent=Msa0082700-mRNA-1 |
| chr1_2 | exon | 61567390 | 61567448 | 61567390 | ID=Msa0082700-mRNA-1:exon:20350;Parent=Msa0082700-mRNA-1 |
| chr1_2 | exon | 61567707 | 61567776 | 61567707 | ID=Msa0082700-mRNA-1:exon:20351;Parent=Msa0082700-mRNA-1 |
| chr1_2 | five_prime_UTR | 61563927 | 61564297 | 61563927 | ID=Msa0082700-mRNA-1:five_prime_utr;Parent=Msa0082700-mRNA-1 |
| chr1_2 | CDS | 61564298 | 61564372 | 61564298 | ID=Msa0082700-mRNA-1:cds;Parent=Msa0082700-mRNA-1 |
| chr1_2 | CDS | 61564449 | 61564559 | 61564449 | ID=Msa0082700-mRNA-1:cds;Parent=Msa0082700-mRNA-1 |
| chr1_2 | CDS | 61566376 | 61566499 | 61566376 | ID=Msa0082700-mRNA-1:cds;Parent=Msa0082700-mRNA-1 |
| chr1_2 | CDS | 61566579 | 61566652 | 61566579 | ID=Msa0082700-mRNA-1:cds;Parent=Msa0082700-mRNA-1 |
| chr1_2 | CDS | 61566759 | 61566803 | 61566759 | ID=Msa0082700-mRNA-1:cds;Parent=Msa0082700-mRNA-1 |
| chr1_2 | CDS | 61567005 | 61567055 | 61567005 | ID=Msa0082700-mRNA-1:cds;Parent=Msa0082700-mRNA-1 |
| chr1_2 | CDS | 61567152 | 61567220 | 61567152 | ID=Msa0082700-mRNA-1:cds;Parent=Msa0082700-mRNA-1 |
| chr1_2 | CDS | 61567390 | 61567448 | 61567390 | ID=Msa0082700-mRNA-1:cds;Parent=Msa0082700-mRNA-1 |
| chr1_2 | CDS | 61567707 | 61567776 | 61567707 | ID=Msa0082700-mRNA-1:cds;Parent=Msa0082700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
