Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0083250 | sp|Q03662|GSTX1_TOBAC | 45.755 | 212 | 110 | 3 | 1 | 211 | 1 | 208 | 5.88e-55 | 178 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0083250 | Q1RSH9 | 93.333 | 225 | 15 | 0 | 1 | 225 | 1 | 225 | 3.44e-155 | 438 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037730 | Msa0083250 | 0.812562 | 3.982388e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0083250 | MtrunA17_Chr1g0196711 | 93.333 | 225 | 15 | 0 | 1 | 225 | 1 | 225 | 6.62e-159 | 438 |
| Msa0083250 | MtrunA17_Chr1g0196661 | 81.778 | 225 | 41 | 0 | 1 | 225 | 1 | 225 | 1.10e-139 | 390 |
| Msa0083250 | MtrunA17_Chr1g0196721 | 82.791 | 215 | 37 | 0 | 4 | 218 | 3 | 217 | 5.21e-133 | 373 |
| Msa0083250 | MtrunA17_Chr1g0196691 | 78.281 | 221 | 47 | 1 | 1 | 220 | 26 | 246 | 9.67e-127 | 358 |
| Msa0083250 | MtrunA17_Chr4g0029341 | 66.977 | 215 | 71 | 0 | 3 | 217 | 4 | 218 | 7.24e-105 | 301 |
| Msa0083250 | MtrunA17_Chr1g0212301 | 47.143 | 210 | 108 | 2 | 1 | 208 | 1 | 209 | 4.66e-63 | 196 |
| Msa0083250 | MtrunA17_Chr3g0132581 | 44.595 | 222 | 111 | 5 | 1 | 214 | 1 | 218 | 4.47e-57 | 180 |
| Msa0083250 | MtrunA17_Chr1g0196771 | 44.076 | 211 | 115 | 2 | 1 | 210 | 1 | 209 | 5.52e-57 | 180 |
| Msa0083250 | MtrunA17_Chr4g0008791 | 41.905 | 210 | 118 | 2 | 2 | 210 | 6 | 212 | 9.98e-53 | 169 |
| Msa0083250 | MtrunA17_Chr4g0008781 | 43.810 | 210 | 112 | 3 | 3 | 210 | 8 | 213 | 1.08e-51 | 166 |
| Msa0083250 | MtrunA17_Chr7g0240511 | 42.081 | 221 | 119 | 4 | 3 | 222 | 7 | 219 | 1.14e-51 | 166 |
| Msa0083250 | MtrunA17_Chr8g0379581 | 41.818 | 220 | 118 | 2 | 3 | 214 | 5 | 222 | 9.30e-51 | 164 |
| Msa0083250 | MtrunA17_Chr7g0240641 | 44.286 | 210 | 109 | 5 | 4 | 210 | 8 | 212 | 2.13e-50 | 163 |
| Msa0083250 | MtrunA17_Chr6g0483141 | 40.175 | 229 | 125 | 3 | 1 | 224 | 1 | 222 | 5.11e-50 | 162 |
| Msa0083250 | MtrunA17_Chr7g0240561 | 40.090 | 222 | 127 | 3 | 3 | 222 | 7 | 224 | 2.85e-49 | 160 |
| Msa0083250 | MtrunA17_Chr7g0240681 | 42.857 | 210 | 115 | 2 | 3 | 210 | 7 | 213 | 4.48e-49 | 160 |
| Msa0083250 | MtrunA17_Chr5g0417011 | 40.654 | 214 | 119 | 4 | 2 | 209 | 6 | 217 | 2.47e-48 | 158 |
| Msa0083250 | MtrunA17_Chr7g0240631 | 43.062 | 209 | 113 | 4 | 4 | 210 | 8 | 212 | 3.58e-48 | 157 |
| Msa0083250 | MtrunA17_Chr7g0240691 | 39.908 | 218 | 126 | 2 | 3 | 218 | 37 | 251 | 7.42e-47 | 155 |
| Msa0083250 | MtrunA17_Chr7g0240611 | 39.726 | 219 | 124 | 3 | 3 | 220 | 7 | 218 | 3.30e-46 | 152 |
| Msa0083250 | MtrunA17_Chr7g0240581 | 38.462 | 221 | 130 | 4 | 4 | 222 | 8 | 224 | 6.24e-46 | 152 |
| Msa0083250 | MtrunA17_Chr2g0312721 | 40.191 | 209 | 120 | 3 | 3 | 210 | 4 | 208 | 1.29e-45 | 151 |
| Msa0083250 | MtrunA17_Chr2g0312771 | 41.627 | 209 | 117 | 3 | 3 | 210 | 4 | 208 | 2.54e-45 | 150 |
| Msa0083250 | MtrunA17_Chr7g0240671 | 39.904 | 208 | 117 | 3 | 4 | 210 | 5 | 205 | 3.53e-45 | 150 |
| Msa0083250 | MtrunA17_Chr2g0312811 | 40.758 | 211 | 118 | 4 | 3 | 210 | 4 | 210 | 3.84e-45 | 150 |
| Msa0083250 | MtrunA17_Chr5g0415411 | 38.889 | 216 | 122 | 4 | 3 | 210 | 5 | 218 | 8.21e-45 | 149 |
| Msa0083250 | MtrunA17_Chr2g0312751 | 41.148 | 209 | 118 | 3 | 3 | 210 | 4 | 208 | 1.58e-44 | 148 |
| Msa0083250 | MtrunA17_Chr2g0312791 | 42.180 | 211 | 115 | 5 | 3 | 210 | 4 | 210 | 2.80e-44 | 147 |
| Msa0083250 | MtrunA17_Chr8g0379561 | 39.904 | 208 | 123 | 1 | 3 | 210 | 6 | 211 | 6.47e-44 | 147 |
| Msa0083250 | MtrunA17_Chr7g0240551 | 38.571 | 210 | 125 | 2 | 3 | 211 | 7 | 213 | 6.49e-44 | 147 |
| Msa0083250 | MtrunA17_Chr2g0312731 | 38.785 | 214 | 123 | 4 | 3 | 215 | 4 | 210 | 1.61e-43 | 145 |
| Msa0083250 | MtrunA17_Chr8g0363751 | 39.912 | 228 | 125 | 6 | 2 | 220 | 4 | 228 | 4.53e-43 | 145 |
| Msa0083250 | MtrunA17_Chr7g0240541 | 38.571 | 210 | 125 | 2 | 3 | 211 | 7 | 213 | 1.52e-42 | 143 |
| Msa0083250 | MtrunA17_Chr2g0312781 | 38.140 | 215 | 125 | 4 | 3 | 216 | 21 | 228 | 3.61e-42 | 142 |
| Msa0083250 | MtrunA17_Chr7g0240521 | 39.910 | 223 | 127 | 5 | 3 | 222 | 14 | 232 | 9.31e-42 | 141 |
| Msa0083250 | MtrunA17_Chr7g0240661 | 42.180 | 211 | 110 | 4 | 3 | 210 | 7 | 208 | 6.81e-41 | 139 |
| Msa0083250 | MtrunA17_Chr7g0240531 | 37.619 | 210 | 127 | 2 | 3 | 211 | 7 | 213 | 8.18e-41 | 139 |
| Msa0083250 | MtrunA17_Chr7g0240651 | 40.476 | 210 | 115 | 4 | 3 | 210 | 7 | 208 | 3.83e-40 | 137 |
| Msa0083250 | MtrunA17_Chr3g0107741 | 39.423 | 208 | 121 | 4 | 4 | 210 | 10 | 213 | 2.76e-38 | 132 |
| Msa0083250 | MtrunA17_Chr2g0312681 | 38.756 | 209 | 123 | 3 | 3 | 210 | 4 | 208 | 2.51e-37 | 130 |
| Msa0083250 | MtrunA17_Chr3g0107731 | 38.095 | 210 | 125 | 3 | 2 | 210 | 8 | 213 | 7.70e-37 | 129 |
| Msa0083250 | MtrunA17_Chr4g0069471 | 44.118 | 170 | 91 | 3 | 3 | 170 | 25 | 192 | 2.82e-36 | 126 |
| Msa0083250 | MtrunA17_Chr8g0357241 | 38.614 | 202 | 119 | 4 | 10 | 210 | 11 | 208 | 2.51e-35 | 124 |
| Msa0083250 | MtrunA17_Chr2g0312691 | 38.756 | 209 | 123 | 3 | 3 | 210 | 4 | 208 | 2.57e-34 | 122 |
| Msa0083250 | MtrunA17_Chr8g0357211 | 37.129 | 202 | 122 | 3 | 10 | 210 | 11 | 208 | 3.78e-34 | 121 |
| Msa0083250 | MtrunA17_Chr2g0312711 | 39.130 | 207 | 118 | 5 | 3 | 207 | 4 | 204 | 3.00e-33 | 119 |
| Msa0083250 | MtrunA17_Chr8g0391631 | 43.125 | 160 | 79 | 6 | 1 | 151 | 19 | 175 | 9.78e-32 | 114 |
| Msa0083250 | MtrunA17_Chr5g0433801 | 35.468 | 203 | 126 | 3 | 9 | 210 | 12 | 210 | 6.81e-31 | 113 |
| Msa0083250 | MtrunA17_Chr2g0313561 | 62.500 | 56 | 20 | 1 | 47 | 101 | 2 | 57 | 1.57e-19 | 79.7 |
| Msa0083250 | MtrunA17_Chr5g0415421 | 45.946 | 74 | 37 | 1 | 27 | 97 | 11 | 84 | 1.56e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0083250 | AT2G29470.1 | 38.914 | 221 | 129 | 5 | 4 | 221 | 8 | 225 | 1.25e-50 | 164 |
| Msa0083250 | AT3G09270.1 | 42.222 | 225 | 114 | 7 | 4 | 220 | 7 | 223 | 2.64e-48 | 158 |
| Msa0083250 | AT2G29460.1 | 36.530 | 219 | 136 | 2 | 3 | 220 | 7 | 223 | 2.74e-47 | 155 |
| Msa0083250 | AT2G29490.1 | 38.813 | 219 | 129 | 4 | 4 | 220 | 8 | 223 | 2.95e-46 | 153 |
| Msa0083250 | AT2G29450.1 | 37.727 | 220 | 133 | 3 | 3 | 220 | 6 | 223 | 3.19e-46 | 153 |
| Msa0083250 | AT1G10370.1 | 39.732 | 224 | 130 | 3 | 2 | 220 | 4 | 227 | 3.63e-46 | 153 |
| Msa0083250 | AT1G59670.1 | 38.496 | 226 | 133 | 4 | 3 | 222 | 6 | 231 | 4.68e-46 | 153 |
| Msa0083250 | AT2G29420.1 | 37.963 | 216 | 132 | 1 | 3 | 218 | 9 | 222 | 1.05e-44 | 149 |
| Msa0083250 | AT1G59700.1 | 39.252 | 214 | 124 | 4 | 3 | 210 | 6 | 219 | 2.10e-43 | 146 |
| Msa0083250 | AT2G29480.1 | 36.986 | 219 | 133 | 4 | 4 | 220 | 8 | 223 | 6.43e-43 | 144 |
| Msa0083250 | AT1G10360.1 | 39.462 | 223 | 130 | 3 | 3 | 220 | 5 | 227 | 1.31e-42 | 144 |
| Msa0083250 | AT2G29440.1 | 36.486 | 222 | 132 | 5 | 3 | 220 | 6 | 222 | 1.01e-41 | 141 |
| Msa0083250 | AT1G78370.1 | 37.864 | 206 | 123 | 4 | 6 | 210 | 7 | 208 | 1.61e-41 | 140 |
| Msa0083250 | AT1G74590.1 | 37.264 | 212 | 130 | 2 | 2 | 210 | 6 | 217 | 2.73e-41 | 140 |
| Msa0083250 | AT1G78380.1 | 39.713 | 209 | 121 | 4 | 3 | 210 | 4 | 208 | 4.40e-40 | 137 |
| Msa0083250 | AT5G62480.1 | 35.909 | 220 | 120 | 5 | 3 | 208 | 8 | 220 | 6.31e-40 | 137 |
| Msa0083250 | AT1G17180.1 | 37.799 | 209 | 125 | 4 | 3 | 210 | 4 | 208 | 6.92e-40 | 137 |
| Msa0083250 | AT1G78340.1 | 38.278 | 209 | 124 | 3 | 3 | 210 | 4 | 208 | 1.26e-39 | 136 |
| Msa0083250 | AT1G78320.1 | 38.164 | 207 | 123 | 3 | 3 | 208 | 4 | 206 | 1.40e-39 | 136 |
| Msa0083250 | AT1G17170.1 | 38.278 | 209 | 123 | 4 | 3 | 210 | 4 | 207 | 1.95e-38 | 133 |
| Msa0083250 | AT1G69930.1 | 37.557 | 221 | 120 | 4 | 4 | 213 | 13 | 226 | 4.65e-38 | 132 |
| Msa0083250 | AT3G43800.1 | 40.670 | 209 | 117 | 4 | 3 | 207 | 5 | 210 | 1.78e-37 | 130 |
| Msa0083250 | AT1G78360.1 | 37.441 | 211 | 126 | 5 | 2 | 210 | 3 | 209 | 4.86e-37 | 129 |
| Msa0083250 | AT1G69920.1 | 35.211 | 213 | 132 | 4 | 4 | 210 | 35 | 247 | 1.06e-35 | 127 |
| Msa0083250 | AT1G27130.1 | 35.211 | 213 | 132 | 4 | 4 | 210 | 7 | 219 | 5.81e-34 | 121 |
| Msa0083250 | AT1G17190.1 | 33.790 | 219 | 140 | 4 | 3 | 220 | 5 | 219 | 6.92e-34 | 121 |
| Msa0083250 | AT1G27140.1 | 35.849 | 212 | 129 | 4 | 4 | 208 | 7 | 218 | 1.92e-33 | 120 |
| Msa0083250 | AT1G53680.1 | 36.946 | 203 | 119 | 5 | 9 | 207 | 13 | 210 | 4.02e-33 | 119 |
| Msa0083250 | AT5G62480.3 | 28.571 | 217 | 113 | 4 | 3 | 208 | 8 | 193 | 1.28e-23 | 94.4 |
| Msa0083250 | AT5G62480.2 | 28.571 | 217 | 114 | 4 | 3 | 208 | 8 | 194 | 1.55e-23 | 94.4 |
| Msa0083250 | AT1G78320.2 | 29.612 | 206 | 115 | 3 | 3 | 208 | 4 | 179 | 3.36e-20 | 85.1 |
Find 51 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGTATACCTTTCAAATTT+AGG | 0.186037 | 1_2:+62308808 | None:intergenic |
| ATAAAGCTCAAGCCCGATTT+TGG | 0.200050 | 1_2:-62308605 | Msa0083250:CDS |
| AGAAGGCTAAAGAGAATTTA+TGG | 0.203200 | 1_2:-62307775 | Msa0083250:CDS |
| TGGTATACCTTTCAAATTTA+GGG | 0.227243 | 1_2:+62308809 | None:intergenic |
| CATACAACCCTTAAAGTAAA+AGG | 0.294008 | 1_2:+62308834 | None:intergenic |
| AGGTGAAACTACATGGATTT+TGG | 0.314704 | 1_2:-62308863 | Msa0083250:CDS |
| CAATATATTTAACCCAAAAT+CGG | 0.347669 | 1_2:+62308592 | None:intergenic |
| GCCACCAACTTCTCTTGGTC+AGG | 0.366758 | 1_2:+62307530 | None:intergenic |
| TTGAATACATTGATGAGATA+TGG | 0.380718 | 1_2:-62308662 | Msa0083250:CDS |
| TCGGGCTTGAGCTTTATCAT+AGG | 0.384698 | 1_2:+62308611 | None:intergenic |
| AATGATCATGGACTCACATA+TGG | 0.394155 | 1_2:+62308686 | None:intergenic |
| TATTAAACCATAAATGCAAT+CGG | 0.423005 | 1_2:+62307588 | None:intergenic |
| GAAGGCTAAAGAGAATTTAT+GGG | 0.434374 | 1_2:-62307774 | Msa0083250:CDS |
| CTTCAAGATTTCGGCGATTG+AGG | 0.438196 | 1_2:-62307831 | Msa0083250:intron |
| ATTAAACCATAAATGCAATC+GGG | 0.438271 | 1_2:+62307589 | None:intergenic |
| AATATATTTAACCCAAAATC+GGG | 0.438660 | 1_2:+62308593 | None:intergenic |
| AGTTGTTGAGGATCGGTGTT+TGG | 0.448281 | 1_2:-62307741 | Msa0083250:CDS |
| AGCATTGTAGACATAACTCT+TGG | 0.468767 | 1_2:-62307683 | Msa0083250:CDS |
| GAAAAGCCACCAACTTCTCT+TGG | 0.471664 | 1_2:+62307525 | None:intergenic |
| TTTATGGTTTAATAATTTCA+AGG | 0.475281 | 1_2:-62307579 | Msa0083250:CDS |
| TCTTCCTCTATGTTCTCATA+TGG | 0.483131 | 1_2:+62308789 | None:intergenic |
| AATGTATTCAACAATGATCA+TGG | 0.484642 | 1_2:+62308674 | None:intergenic |
| GCTTTATCATAGGGATGAGC+AGG | 0.495553 | 1_2:+62308621 | None:intergenic |
| CGGGCTTGAGCTTTATCATA+GGG | 0.503497 | 1_2:+62308612 | None:intergenic |
| CACCCCTGACCAAGAGAAGT+TGG | 0.508213 | 1_2:-62307534 | Msa0083250:CDS |
| GGTTAAATATATTGATGGCA+TGG | 0.511265 | 1_2:-62308583 | Msa0083250:intron |
| TTTCCATCATGAACTAGCAC+TGG | 0.520703 | 1_2:+62308711 | None:intergenic |
| TCTTCTAATTGATAAAATCA+AGG | 0.524764 | 1_2:-62307498 | Msa0083250:CDS |
| GGTTATATTGAAGAAGTTGA+GGG | 0.524798 | 1_2:+62308751 | None:intergenic |
| ATGATCATGGACTCACATAT+GGG | 0.533497 | 1_2:+62308687 | None:intergenic |
| AGAATATCTTGCAGAGTGAA+AGG | 0.542132 | 1_2:-62307616 | Msa0083250:CDS |
| GGGTTATATTGAAGAAGTTG+AGG | 0.544588 | 1_2:+62308750 | None:intergenic |
| GCTCTTCACAACTTATGCTA+TGG | 0.547521 | 1_2:+62307801 | None:intergenic |
| GACTCAAAGTTGTTGAGGAT+CGG | 0.551469 | 1_2:-62307748 | Msa0083250:CDS |
| ATGGCAGAGGTGAAACTACA+TGG | 0.553227 | 1_2:-62308870 | Msa0083250:CDS |
| CCACCAACTTCTCTTGGTCA+GGG | 0.554529 | 1_2:+62307531 | None:intergenic |
| GTATGGACCCTAAATTTGAA+AGG | 0.560566 | 1_2:-62308816 | Msa0083250:CDS |
| ACTCCAGTGCTAGTTCATGA+TGG | 0.573621 | 1_2:-62308714 | Msa0083250:CDS |
| GATCAGAAGAAATTCTATGC+GGG | 0.579648 | 1_2:-62307716 | Msa0083250:CDS |
| GGCGAGACTCAAAGTTGTTG+AGG | 0.587855 | 1_2:-62307753 | Msa0083250:CDS |
| TTAAACCATAAATGCAATCG+GGG | 0.593715 | 1_2:+62307590 | None:intergenic |
| AAGTTGTGAAGAGCGAGAGA+AGG | 0.595648 | 1_2:-62307792 | Msa0083250:CDS |
| CTTCACAACTTATGCTATGG+CGG | 0.605752 | 1_2:+62307804 | None:intergenic |
| CCCTGACCAAGAGAAGTTGG+TGG | 0.608979 | 1_2:-62307531 | Msa0083250:CDS |
| CAAGCTTAGGAGAATGGCAG+AGG | 0.610526 | 1_2:-62308883 | None:intergenic |
| CACCAACTTCTCTTGGTCAG+GGG | 0.619146 | 1_2:+62307532 | None:intergenic |
| GCAATCAAGACATCTTCTTG+AGG | 0.623017 | 1_2:-62307476 | None:intergenic |
| TATACCATATGAGAACATAG+AGG | 0.675165 | 1_2:-62308793 | Msa0083250:CDS |
| TAAACCATAAATGCAATCGG+GGG | 0.688859 | 1_2:+62307591 | None:intergenic |
| TGATCAGAAGAAATTCTATG+CGG | 0.720599 | 1_2:-62307717 | Msa0083250:CDS |
| GCAGGAAGCAATGAGTTGTG+TGG | 0.742760 | 1_2:+62308639 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATAAAATACATCAT+TGG | + | chr1_2:62307812-62307831 | None:intergenic | 10.0% |
| !! | ATATAATTTATCTTGATAAA+TGG | - | chr1_2:62308230-62308249 | Msa0083250:intron | 10.0% |
| !! | ATAGATTATAGTTATAAAAT+AGG | + | chr1_2:62308391-62308410 | None:intergenic | 10.0% |
| !! | AATAAAATAAAATACATCAT+TGG | + | chr1_2:62307812-62307831 | None:intergenic | 10.0% |
| !! | ATATAATTTATCTTGATAAA+TGG | - | chr1_2:62308230-62308249 | Msa0083250:intron | 10.0% |
| !! | ATAGATTATAGTTATAAAAT+AGG | + | chr1_2:62308391-62308410 | None:intergenic | 10.0% |
| !!! | TTCTTTTGAAAAAACTAATT+GGG | + | chr1_2:62307911-62307930 | None:intergenic | 15.0% |
| !!! | TTTCTTTTGAAAAAACTAAT+TGG | + | chr1_2:62307912-62307931 | None:intergenic | 15.0% |
| !! | TTTAAAAACGTCAATAATAT+TGG | + | chr1_2:62308302-62308321 | None:intergenic | 15.0% |
| !! | TTTATGGTTTAATAATTTCA+AGG | - | chr1_2:62308769-62308788 | Msa0083250:CDS | 15.0% |
| !!! | TTCTTTTGAAAAAACTAATT+GGG | + | chr1_2:62307911-62307930 | None:intergenic | 15.0% |
| !!! | TTTCTTTTGAAAAAACTAAT+TGG | + | chr1_2:62307912-62307931 | None:intergenic | 15.0% |
| !! | TTTAAAAACGTCAATAATAT+TGG | + | chr1_2:62308302-62308321 | None:intergenic | 15.0% |
| !! | TTTATGGTTTAATAATTTCA+AGG | - | chr1_2:62308769-62308788 | Msa0083250:CDS | 15.0% |
| !! | AATATATTTAACCCAAAATC+GGG | + | chr1_2:62307758-62307777 | None:intergenic | 20.0% |
| !! | CAATATATTTAACCCAAAAT+CGG | + | chr1_2:62307759-62307778 | None:intergenic | 20.0% |
| !!! | TTTTGGGTTAAATATATTGA+TGG | - | chr1_2:62307760-62307779 | Msa0083250:CDS | 20.0% |
| !! | AAAATAAGACAAAGTTAGTT+TGG | - | chr1_2:62308275-62308294 | Msa0083250:intron | 20.0% |
| !! | TTTGAAAACAATGAATTATG+AGG | - | chr1_2:62308361-62308380 | Msa0083250:intron | 20.0% |
| !! | TTGAAAACAATGAATTATGA+GGG | - | chr1_2:62308362-62308381 | Msa0083250:intron | 20.0% |
| !! | TATTAAACCATAAATGCAAT+CGG | + | chr1_2:62308763-62308782 | None:intergenic | 20.0% |
| !! | TCTTCTAATTGATAAAATCA+AGG | - | chr1_2:62308850-62308869 | Msa0083250:CDS | 20.0% |
| !! | AATATATTTAACCCAAAATC+GGG | + | chr1_2:62307758-62307777 | None:intergenic | 20.0% |
| !! | CAATATATTTAACCCAAAAT+CGG | + | chr1_2:62307759-62307778 | None:intergenic | 20.0% |
| !!! | TTTTGGGTTAAATATATTGA+TGG | - | chr1_2:62307760-62307779 | Msa0083250:CDS | 20.0% |
| !! | AAAATAAGACAAAGTTAGTT+TGG | - | chr1_2:62308275-62308294 | Msa0083250:intron | 20.0% |
| !! | TTTGAAAACAATGAATTATG+AGG | - | chr1_2:62308361-62308380 | Msa0083250:intron | 20.0% |
| !! | TTGAAAACAATGAATTATGA+GGG | - | chr1_2:62308362-62308381 | Msa0083250:intron | 20.0% |
| !! | TATTAAACCATAAATGCAAT+CGG | + | chr1_2:62308763-62308782 | None:intergenic | 20.0% |
| !! | TCTTCTAATTGATAAAATCA+AGG | - | chr1_2:62308850-62308869 | Msa0083250:CDS | 20.0% |
| ! | TGGTATACCTTTCAAATTTA+GGG | + | chr1_2:62307542-62307561 | None:intergenic | 25.0% |
| ! | ATGGTATACCTTTCAAATTT+AGG | + | chr1_2:62307543-62307562 | None:intergenic | 25.0% |
| ! | AATGTATTCAACAATGATCA+TGG | + | chr1_2:62307677-62307696 | None:intergenic | 25.0% |
| ! | TTGAATACATTGATGAGATA+TGG | - | chr1_2:62307686-62307705 | Msa0083250:CDS | 25.0% |
| ! | AGTTATGTTTATAAGACACA+AGG | + | chr1_2:62308429-62308448 | None:intergenic | 25.0% |
| !! | GTTAGTTTGAATCATATCAA+TGG | + | chr1_2:62308478-62308497 | None:intergenic | 25.0% |
| ! | TTCAAACTAACAACACTATT+CGG | - | chr1_2:62308487-62308506 | Msa0083250:intron | 25.0% |
| ! | ATTAAACCATAAATGCAATC+GGG | + | chr1_2:62308762-62308781 | None:intergenic | 25.0% |
| ! | TGGTATACCTTTCAAATTTA+GGG | + | chr1_2:62307542-62307561 | None:intergenic | 25.0% |
| ! | ATGGTATACCTTTCAAATTT+AGG | + | chr1_2:62307543-62307562 | None:intergenic | 25.0% |
| ! | AATGTATTCAACAATGATCA+TGG | + | chr1_2:62307677-62307696 | None:intergenic | 25.0% |
| ! | TTGAATACATTGATGAGATA+TGG | - | chr1_2:62307686-62307705 | Msa0083250:CDS | 25.0% |
| ! | AGTTATGTTTATAAGACACA+AGG | + | chr1_2:62308429-62308448 | None:intergenic | 25.0% |
| !! | GTTAGTTTGAATCATATCAA+TGG | + | chr1_2:62308478-62308497 | None:intergenic | 25.0% |
| ! | TTCAAACTAACAACACTATT+CGG | - | chr1_2:62308487-62308506 | Msa0083250:intron | 25.0% |
| ! | ATTAAACCATAAATGCAATC+GGG | + | chr1_2:62308762-62308781 | None:intergenic | 25.0% |
| ! | GTACAGTCCTTTTACTTTAA+GGG | - | chr1_2:62307507-62307526 | Msa0083250:CDS | 30.0% |
| CATACAACCCTTAAAGTAAA+AGG | + | chr1_2:62307517-62307536 | None:intergenic | 30.0% | |
| !! | CTTTTACTTTAAGGGTTGTA+TGG | - | chr1_2:62307515-62307534 | Msa0083250:CDS | 30.0% |
| TATACCATATGAGAACATAG+AGG | - | chr1_2:62307555-62307574 | Msa0083250:CDS | 30.0% | |
| GGTTATATTGAAGAAGTTGA+GGG | + | chr1_2:62307600-62307619 | None:intergenic | 30.0% | |
| ! | GGTTAAATATATTGATGGCA+TGG | - | chr1_2:62307765-62307784 | Msa0083250:CDS | 30.0% |
| ! | TTCCATCGTGATCATTTTAT+AGG | - | chr1_2:62307855-62307874 | Msa0083250:intron | 30.0% |
| TTATAGGCAAAAACTACACT+AGG | - | chr1_2:62307871-62307890 | Msa0083250:intron | 30.0% | |
| !! | ATCTCCATTTCTAGTTGAAA+TGG | - | chr1_2:62308079-62308098 | Msa0083250:intron | 30.0% |
| ! | TAAAATCGTTTGTAGTCTTG+GGG | + | chr1_2:62308118-62308137 | None:intergenic | 30.0% |
| CTAAAATCGTTTGTAGTCTT+GGG | + | chr1_2:62308119-62308138 | None:intergenic | 30.0% | |
| ! | TCTAAAATCGTTTGTAGTCT+TGG | + | chr1_2:62308120-62308139 | None:intergenic | 30.0% |
| GGATCAATACTTCAAGATTT+CGG | - | chr1_2:62308508-62308527 | Msa0083250:intron | 30.0% | |
| AGAAGGCTAAAGAGAATTTA+TGG | - | chr1_2:62308573-62308592 | Msa0083250:intron | 30.0% | |
| GAAGGCTAAAGAGAATTTAT+GGG | - | chr1_2:62308574-62308593 | Msa0083250:intron | 30.0% | |
| TGATCAGAAGAAATTCTATG+CGG | - | chr1_2:62308631-62308650 | Msa0083250:CDS | 30.0% | |
| TTAAACCATAAATGCAATCG+GGG | + | chr1_2:62308761-62308780 | None:intergenic | 30.0% | |
| ! | GTACAGTCCTTTTACTTTAA+GGG | - | chr1_2:62307507-62307526 | Msa0083250:CDS | 30.0% |
| CATACAACCCTTAAAGTAAA+AGG | + | chr1_2:62307517-62307536 | None:intergenic | 30.0% | |
| !! | CTTTTACTTTAAGGGTTGTA+TGG | - | chr1_2:62307515-62307534 | Msa0083250:CDS | 30.0% |
| TATACCATATGAGAACATAG+AGG | - | chr1_2:62307555-62307574 | Msa0083250:CDS | 30.0% | |
| GGTTATATTGAAGAAGTTGA+GGG | + | chr1_2:62307600-62307619 | None:intergenic | 30.0% | |
| ! | GGTTAAATATATTGATGGCA+TGG | - | chr1_2:62307765-62307784 | Msa0083250:CDS | 30.0% |
| ! | TTCCATCGTGATCATTTTAT+AGG | - | chr1_2:62307855-62307874 | Msa0083250:intron | 30.0% |
| TTATAGGCAAAAACTACACT+AGG | - | chr1_2:62307871-62307890 | Msa0083250:intron | 30.0% | |
| !! | ATCTCCATTTCTAGTTGAAA+TGG | - | chr1_2:62308079-62308098 | Msa0083250:intron | 30.0% |
| ! | TAAAATCGTTTGTAGTCTTG+GGG | + | chr1_2:62308118-62308137 | None:intergenic | 30.0% |
| CTAAAATCGTTTGTAGTCTT+GGG | + | chr1_2:62308119-62308138 | None:intergenic | 30.0% | |
| ! | TCTAAAATCGTTTGTAGTCT+TGG | + | chr1_2:62308120-62308139 | None:intergenic | 30.0% |
| GGATCAATACTTCAAGATTT+CGG | - | chr1_2:62308508-62308527 | Msa0083250:intron | 30.0% | |
| AGAAGGCTAAAGAGAATTTA+TGG | - | chr1_2:62308573-62308592 | Msa0083250:intron | 30.0% | |
| GAAGGCTAAAGAGAATTTAT+GGG | - | chr1_2:62308574-62308593 | Msa0083250:intron | 30.0% | |
| TGATCAGAAGAAATTCTATG+CGG | - | chr1_2:62308631-62308650 | Msa0083250:CDS | 30.0% | |
| TTAAACCATAAATGCAATCG+GGG | + | chr1_2:62308761-62308780 | None:intergenic | 30.0% | |
| ! | AGGTGAAACTACATGGATTT+TGG | - | chr1_2:62307485-62307504 | Msa0083250:CDS | 35.0% |
| ! | GGTACAGTCCTTTTACTTTA+AGG | - | chr1_2:62307506-62307525 | Msa0083250:CDS | 35.0% |
| GTATGGACCCTAAATTTGAA+AGG | - | chr1_2:62307532-62307551 | Msa0083250:CDS | 35.0% | |
| TCTTCCTCTATGTTCTCATA+TGG | + | chr1_2:62307562-62307581 | None:intergenic | 35.0% | |
| GGGTTATATTGAAGAAGTTG+AGG | + | chr1_2:62307601-62307620 | None:intergenic | 35.0% | |
| ATGATCATGGACTCACATAT+GGG | + | chr1_2:62307664-62307683 | None:intergenic | 35.0% | |
| AATGATCATGGACTCACATA+TGG | + | chr1_2:62307665-62307684 | None:intergenic | 35.0% | |
| TGCCTATAAAATGATCACGA+TGG | + | chr1_2:62307860-62307879 | None:intergenic | 35.0% | |
| TCGTTAGAGCATATAAGGTA+AGG | + | chr1_2:62308453-62308472 | None:intergenic | 35.0% | |
| TGGTATCGTTAGAGCATATA+AGG | + | chr1_2:62308458-62308477 | None:intergenic | 35.0% | |
| GATCAGAAGAAATTCTATGC+GGG | - | chr1_2:62308632-62308651 | Msa0083250:CDS | 35.0% | |
| AGCATTGTAGACATAACTCT+TGG | - | chr1_2:62308665-62308684 | Msa0083250:CDS | 35.0% | |
| AGAATATCTTGCAGAGTGAA+AGG | - | chr1_2:62308732-62308751 | Msa0083250:CDS | 35.0% | |
| TAAACCATAAATGCAATCGG+GGG | + | chr1_2:62308760-62308779 | None:intergenic | 35.0% | |
| ! | AGGTGAAACTACATGGATTT+TGG | - | chr1_2:62307485-62307504 | Msa0083250:CDS | 35.0% |
| ! | GGTACAGTCCTTTTACTTTA+AGG | - | chr1_2:62307506-62307525 | Msa0083250:CDS | 35.0% |
| GTATGGACCCTAAATTTGAA+AGG | - | chr1_2:62307532-62307551 | Msa0083250:CDS | 35.0% | |
| TCTTCCTCTATGTTCTCATA+TGG | + | chr1_2:62307562-62307581 | None:intergenic | 35.0% | |
| GGGTTATATTGAAGAAGTTG+AGG | + | chr1_2:62307601-62307620 | None:intergenic | 35.0% | |
| ATGATCATGGACTCACATAT+GGG | + | chr1_2:62307664-62307683 | None:intergenic | 35.0% | |
| AATGATCATGGACTCACATA+TGG | + | chr1_2:62307665-62307684 | None:intergenic | 35.0% | |
| TGCCTATAAAATGATCACGA+TGG | + | chr1_2:62307860-62307879 | None:intergenic | 35.0% | |
| TCGTTAGAGCATATAAGGTA+AGG | + | chr1_2:62308453-62308472 | None:intergenic | 35.0% | |
| TGGTATCGTTAGAGCATATA+AGG | + | chr1_2:62308458-62308477 | None:intergenic | 35.0% | |
| GATCAGAAGAAATTCTATGC+GGG | - | chr1_2:62308632-62308651 | Msa0083250:CDS | 35.0% | |
| AGCATTGTAGACATAACTCT+TGG | - | chr1_2:62308665-62308684 | Msa0083250:CDS | 35.0% | |
| AGAATATCTTGCAGAGTGAA+AGG | - | chr1_2:62308732-62308751 | Msa0083250:CDS | 35.0% | |
| TAAACCATAAATGCAATCGG+GGG | + | chr1_2:62308760-62308779 | None:intergenic | 35.0% | |
| !! | CTGGAGTATTTTTGCGTACT+GGG | + | chr1_2:62307621-62307640 | None:intergenic | 40.0% |
| !! | ACTGGAGTATTTTTGCGTAC+TGG | + | chr1_2:62307622-62307641 | None:intergenic | 40.0% |
| TTTCCATCATGAACTAGCAC+TGG | + | chr1_2:62307640-62307659 | None:intergenic | 40.0% | |
| ! | ATAAAGCTCAAGCCCGATTT+TGG | - | chr1_2:62307743-62307762 | Msa0083250:CDS | 40.0% |
| ! | TAAAGCTCAAGCCCGATTTT+GGG | - | chr1_2:62307744-62307763 | Msa0083250:CDS | 40.0% |
| CTCGCCATTTCAACTAGAAA+TGG | + | chr1_2:62308086-62308105 | None:intergenic | 40.0% | |
| !! | CATTTCTAGTTGAAATGGCG+AGG | - | chr1_2:62308084-62308103 | Msa0083250:intron | 40.0% |
| CTTCACAACTTATGCTATGG+CGG | + | chr1_2:62308547-62308566 | None:intergenic | 40.0% | |
| GCTCTTCACAACTTATGCTA+TGG | + | chr1_2:62308550-62308569 | None:intergenic | 40.0% | |
| GACTCAAAGTTGTTGAGGAT+CGG | - | chr1_2:62308600-62308619 | Msa0083250:CDS | 40.0% | |
| !! | CTGGAGTATTTTTGCGTACT+GGG | + | chr1_2:62307621-62307640 | None:intergenic | 40.0% |
| !! | ACTGGAGTATTTTTGCGTAC+TGG | + | chr1_2:62307622-62307641 | None:intergenic | 40.0% |
| TTTCCATCATGAACTAGCAC+TGG | + | chr1_2:62307640-62307659 | None:intergenic | 40.0% | |
| ! | ATAAAGCTCAAGCCCGATTT+TGG | - | chr1_2:62307743-62307762 | Msa0083250:CDS | 40.0% |
| ! | TAAAGCTCAAGCCCGATTTT+GGG | - | chr1_2:62307744-62307763 | Msa0083250:CDS | 40.0% |
| CTCGCCATTTCAACTAGAAA+TGG | + | chr1_2:62308086-62308105 | None:intergenic | 40.0% | |
| !! | CATTTCTAGTTGAAATGGCG+AGG | - | chr1_2:62308084-62308103 | Msa0083250:intron | 40.0% |
| CTTCACAACTTATGCTATGG+CGG | + | chr1_2:62308547-62308566 | None:intergenic | 40.0% | |
| GCTCTTCACAACTTATGCTA+TGG | + | chr1_2:62308550-62308569 | None:intergenic | 40.0% | |
| GACTCAAAGTTGTTGAGGAT+CGG | - | chr1_2:62308600-62308619 | Msa0083250:CDS | 40.0% | |
| ATGGCAGAGGTGAAACTACA+TGG | - | chr1_2:62307478-62307497 | Msa0083250:CDS | 45.0% | |
| ACTCCAGTGCTAGTTCATGA+TGG | - | chr1_2:62307634-62307653 | Msa0083250:CDS | 45.0% | |
| GCTTTATCATAGGGATGAGC+AGG | + | chr1_2:62307730-62307749 | None:intergenic | 45.0% | |
| ! | CGGGCTTGAGCTTTATCATA+GGG | + | chr1_2:62307739-62307758 | None:intergenic | 45.0% |
| ! | TCGGGCTTGAGCTTTATCAT+AGG | + | chr1_2:62307740-62307759 | None:intergenic | 45.0% |
| CTTCAAGATTTCGGCGATTG+AGG | - | chr1_2:62308517-62308536 | Msa0083250:intron | 45.0% | |
| AAGTTGTGAAGAGCGAGAGA+AGG | - | chr1_2:62308556-62308575 | Msa0083250:intron | 45.0% | |
| ! | AGTTGTTGAGGATCGGTGTT+TGG | - | chr1_2:62308607-62308626 | Msa0083250:CDS | 45.0% |
| !! | GGGGTGTTTTCTTTGATGAC+TGG | + | chr1_2:62308800-62308819 | None:intergenic | 45.0% |
| GAAAAGCCACCAACTTCTCT+TGG | + | chr1_2:62308826-62308845 | None:intergenic | 45.0% | |
| ATGGCAGAGGTGAAACTACA+TGG | - | chr1_2:62307478-62307497 | Msa0083250:CDS | 45.0% | |
| ACTCCAGTGCTAGTTCATGA+TGG | - | chr1_2:62307634-62307653 | Msa0083250:CDS | 45.0% | |
| GCTTTATCATAGGGATGAGC+AGG | + | chr1_2:62307730-62307749 | None:intergenic | 45.0% | |
| ! | CGGGCTTGAGCTTTATCATA+GGG | + | chr1_2:62307739-62307758 | None:intergenic | 45.0% |
| ! | TCGGGCTTGAGCTTTATCAT+AGG | + | chr1_2:62307740-62307759 | None:intergenic | 45.0% |
| CTTCAAGATTTCGGCGATTG+AGG | - | chr1_2:62308517-62308536 | Msa0083250:intron | 45.0% | |
| AAGTTGTGAAGAGCGAGAGA+AGG | - | chr1_2:62308556-62308575 | Msa0083250:intron | 45.0% | |
| ! | AGTTGTTGAGGATCGGTGTT+TGG | - | chr1_2:62308607-62308626 | Msa0083250:CDS | 45.0% |
| !! | GGGGTGTTTTCTTTGATGAC+TGG | + | chr1_2:62308800-62308819 | None:intergenic | 45.0% |
| GAAAAGCCACCAACTTCTCT+TGG | + | chr1_2:62308826-62308845 | None:intergenic | 45.0% | |
| GCAGGAAGCAATGAGTTGTG+TGG | + | chr1_2:62307712-62307731 | None:intergenic | 50.0% | |
| GGCGAGACTCAAAGTTGTTG+AGG | - | chr1_2:62308595-62308614 | Msa0083250:CDS | 50.0% | |
| GGTTCCCCCGATTGCATTTA+TGG | - | chr1_2:62308753-62308772 | Msa0083250:CDS | 50.0% | |
| CACCAACTTCTCTTGGTCAG+GGG | + | chr1_2:62308819-62308838 | None:intergenic | 50.0% | |
| CCACCAACTTCTCTTGGTCA+GGG | + | chr1_2:62308820-62308839 | None:intergenic | 50.0% | |
| GCAGGAAGCAATGAGTTGTG+TGG | + | chr1_2:62307712-62307731 | None:intergenic | 50.0% | |
| GGCGAGACTCAAAGTTGTTG+AGG | - | chr1_2:62308595-62308614 | Msa0083250:CDS | 50.0% | |
| GGTTCCCCCGATTGCATTTA+TGG | - | chr1_2:62308753-62308772 | Msa0083250:CDS | 50.0% | |
| CACCAACTTCTCTTGGTCAG+GGG | + | chr1_2:62308819-62308838 | None:intergenic | 50.0% | |
| CCACCAACTTCTCTTGGTCA+GGG | + | chr1_2:62308820-62308839 | None:intergenic | 50.0% | |
| CACCCCTGACCAAGAGAAGT+TGG | - | chr1_2:62308814-62308833 | Msa0083250:CDS | 55.0% | |
| CCCTGACCAAGAGAAGTTGG+TGG | - | chr1_2:62308817-62308836 | Msa0083250:CDS | 55.0% | |
| GCCACCAACTTCTCTTGGTC+AGG | + | chr1_2:62308821-62308840 | None:intergenic | 55.0% | |
| CACCCCTGACCAAGAGAAGT+TGG | - | chr1_2:62308814-62308833 | Msa0083250:CDS | 55.0% | |
| CCCTGACCAAGAGAAGTTGG+TGG | - | chr1_2:62308817-62308836 | Msa0083250:CDS | 55.0% | |
| GCCACCAACTTCTCTTGGTC+AGG | + | chr1_2:62308821-62308840 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 62307478 | 62308892 | 62307478 | ID=Msa0083250;Name=Msa0083250 |
| chr1_2 | mRNA | 62307478 | 62308892 | 62307478 | ID=Msa0083250-mRNA-1;Parent=Msa0083250;Name=Msa0083250-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0|0|1|1|1|2|0|225 |
| chr1_2 | exon | 62308584 | 62308892 | 62308584 | ID=Msa0083250-mRNA-1:exon:20772;Parent=Msa0083250-mRNA-1 |
| chr1_2 | exon | 62307478 | 62307846 | 62307478 | ID=Msa0083250-mRNA-1:exon:20771;Parent=Msa0083250-mRNA-1 |
| chr1_2 | CDS | 62308584 | 62308892 | 62308584 | ID=Msa0083250-mRNA-1:cds;Parent=Msa0083250-mRNA-1 |
| chr1_2 | CDS | 62307478 | 62307846 | 62307478 | ID=Msa0083250-mRNA-1:cds;Parent=Msa0083250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
