AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0037730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037730 MtrunA17_Chr1g0196711 93.333 225 15 0 1 225 1 225 3.17e-159 439
Msa0037730 MtrunA17_Chr1g0196661 82.222 225 40 0 1 225 1 225 4.05e-140 391
Msa0037730 MtrunA17_Chr1g0196721 83.256 215 36 0 4 218 3 217 1.84e-133 374
Msa0037730 MtrunA17_Chr1g0196691 78.733 221 46 1 1 220 26 246 3.09e-127 359
Msa0037730 MtrunA17_Chr4g0029341 66.977 215 71 0 3 217 4 218 3.33e-105 302
Msa0037730 MtrunA17_Chr1g0212301 47.143 210 108 2 1 208 1 209 4.46e-63 196
Msa0037730 MtrunA17_Chr3g0132581 44.595 222 111 5 1 214 1 218 4.42e-57 180
Msa0037730 MtrunA17_Chr1g0196771 44.076 211 115 2 1 210 1 209 6.49e-57 180
Msa0037730 MtrunA17_Chr4g0008791 41.905 210 118 2 2 210 6 212 9.15e-53 169
Msa0037730 MtrunA17_Chr7g0240511 42.534 221 118 4 3 222 7 219 3.50e-52 167
Msa0037730 MtrunA17_Chr4g0008781 43.810 210 112 3 3 210 8 213 1.02e-51 166
Msa0037730 MtrunA17_Chr8g0379581 41.818 220 118 2 3 214 5 222 9.20e-51 164
Msa0037730 MtrunA17_Chr7g0240641 44.286 210 109 5 4 210 8 212 2.20e-50 163
Msa0037730 MtrunA17_Chr6g0483141 40.175 229 125 3 1 224 1 222 8.88e-50 162
Msa0037730 MtrunA17_Chr7g0240561 40.541 222 126 3 3 222 7 224 8.95e-50 162
Msa0037730 MtrunA17_Chr7g0240681 42.857 210 115 2 3 210 7 213 4.10e-49 160
Msa0037730 MtrunA17_Chr5g0417011 40.654 214 119 4 2 209 6 217 2.15e-48 158
Msa0037730 MtrunA17_Chr7g0240631 42.009 219 121 4 4 220 8 222 2.64e-48 158
Msa0037730 MtrunA17_Chr7g0240691 40.952 210 119 2 3 210 37 243 8.36e-47 155
Msa0037730 MtrunA17_Chr7g0240611 40.183 219 123 3 3 220 7 218 1.06e-46 154
Msa0037730 MtrunA17_Chr7g0240581 38.914 221 129 4 4 222 8 224 2.14e-46 153
Msa0037730 MtrunA17_Chr2g0312721 40.191 209 120 3 3 210 4 208 1.34e-45 151
Msa0037730 MtrunA17_Chr2g0312771 41.627 209 117 3 3 210 4 208 2.92e-45 150
Msa0037730 MtrunA17_Chr7g0240671 39.904 208 117 3 4 210 5 205 3.61e-45 150
Msa0037730 MtrunA17_Chr2g0312811 40.758 211 118 4 3 210 4 210 4.52e-45 149
Msa0037730 MtrunA17_Chr5g0415411 38.889 216 122 4 3 210 5 218 7.86e-45 149
Msa0037730 MtrunA17_Chr2g0312751 41.148 209 118 3 3 210 4 208 1.70e-44 148
Msa0037730 MtrunA17_Chr2g0312791 42.180 211 115 5 3 210 4 210 2.96e-44 147
Msa0037730 MtrunA17_Chr8g0379561 39.904 208 123 1 3 210 6 211 6.47e-44 147
Msa0037730 MtrunA17_Chr7g0240551 38.571 210 125 2 3 211 7 213 6.71e-44 147
Msa0037730 MtrunA17_Chr2g0312731 38.605 215 124 4 3 216 4 211 8.78e-44 146
Msa0037730 MtrunA17_Chr8g0363751 39.912 228 125 6 2 220 4 228 5.87e-43 144
Msa0037730 MtrunA17_Chr2g0312781 38.605 215 124 4 3 216 21 228 1.33e-42 144
Msa0037730 MtrunA17_Chr7g0240541 38.571 210 125 2 3 211 7 213 1.55e-42 143
Msa0037730 MtrunA17_Chr7g0240521 40.359 223 126 5 3 222 14 232 3.04e-42 142
Msa0037730 MtrunA17_Chr7g0240661 42.180 211 110 4 3 210 7 208 6.74e-41 139
Msa0037730 MtrunA17_Chr7g0240531 37.619 210 127 2 3 211 7 213 8.63e-41 139
Msa0037730 MtrunA17_Chr7g0240651 40.476 210 115 4 3 210 7 208 3.67e-40 137
Msa0037730 MtrunA17_Chr3g0107741 39.423 208 121 4 4 210 10 213 2.94e-38 132
Msa0037730 MtrunA17_Chr2g0312681 38.756 209 123 3 3 210 4 208 2.68e-37 129
Msa0037730 MtrunA17_Chr3g0107731 38.095 210 125 3 2 210 8 213 8.86e-37 128
Msa0037730 MtrunA17_Chr4g0069471 44.118 170 91 3 3 170 25 192 2.97e-36 126
Msa0037730 MtrunA17_Chr8g0357241 38.614 202 119 4 10 210 11 208 2.38e-35 124
Msa0037730 MtrunA17_Chr2g0312691 38.756 209 123 3 3 210 4 208 2.60e-34 122
Msa0037730 MtrunA17_Chr8g0357211 37.129 202 122 3 10 210 11 208 4.03e-34 121
Msa0037730 MtrunA17_Chr2g0312711 39.130 207 118 5 3 207 4 204 3.16e-33 119
Msa0037730 MtrunA17_Chr8g0391631 43.125 160 79 6 1 151 19 175 9.68e-32 114
Msa0037730 MtrunA17_Chr5g0433801 35.468 203 126 3 9 210 12 210 7.26e-31 113
Msa0037730 MtrunA17_Chr2g0313561 62.500 56 20 1 47 101 2 57 1.50e-19 79.7
Msa0037730 MtrunA17_Chr5g0415421 45.946 74 37 1 27 97 11 84 1.45e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037730 AT2G29470.1 38.914 221 129 5 4 221 8 225 1.93e-50 164
Msa0037730 AT3G09270.1 44.393 214 103 7 4 209 7 212 3.78e-48 158
Msa0037730 AT2G29460.1 36.986 219 135 2 3 220 7 223 1.06e-47 157
Msa0037730 AT2G29490.1 39.269 219 128 4 4 220 8 223 1.18e-46 154
Msa0037730 AT2G29450.1 38.182 220 132 3 3 220 6 223 1.31e-46 154
Msa0037730 AT1G10370.1 39.732 224 130 3 2 220 4 227 3.47e-46 153
Msa0037730 AT1G59670.1 39.720 214 123 4 3 210 6 219 7.45e-46 152
Msa0037730 AT2G29420.1 38.426 216 131 1 3 218 9 222 3.47e-45 150
Msa0037730 AT1G59700.1 39.252 214 124 4 3 210 6 219 2.24e-43 146
Msa0037730 AT2G29480.1 37.443 219 132 4 4 220 8 223 2.49e-43 145
Msa0037730 AT1G10360.1 39.462 223 130 3 3 220 5 227 1.18e-42 144
Msa0037730 AT2G29440.1 36.937 222 131 5 3 220 6 222 4.62e-42 142
Msa0037730 AT1G78370.1 37.864 206 123 4 6 210 7 208 1.57e-41 140
Msa0037730 AT1G74590.1 37.264 212 130 2 2 210 6 217 2.88e-41 140
Msa0037730 AT1G78380.1 39.352 216 126 4 3 217 4 215 2.65e-40 137
Msa0037730 AT5G62480.1 35.909 220 120 5 3 208 8 220 6.18e-40 137
Msa0037730 AT1G17180.1 37.799 209 125 4 3 210 4 208 7.88e-40 136
Msa0037730 AT1G78340.1 38.278 209 124 3 3 210 4 208 1.28e-39 136
Msa0037730 AT1G78320.1 38.164 207 123 3 3 208 4 206 1.49e-39 135
Msa0037730 AT1G17170.1 38.278 209 123 4 3 210 4 207 1.87e-38 133
Msa0037730 AT1G69930.1 37.557 221 120 4 4 213 13 226 4.13e-38 132
Msa0037730 AT3G43800.1 40.670 209 117 4 3 207 5 210 1.45e-37 131
Msa0037730 AT1G78360.1 37.441 211 126 5 2 210 3 209 4.92e-37 129
Msa0037730 AT1G69920.1 35.211 213 132 4 4 210 35 247 1.05e-35 127
Msa0037730 AT1G17190.1 33.790 219 140 4 3 220 5 219 4.36e-34 122
Msa0037730 AT1G27130.1 35.211 213 132 4 4 210 7 219 6.13e-34 121
Msa0037730 AT1G27140.1 35.294 221 136 4 4 217 7 227 1.49e-33 121
Msa0037730 AT1G53680.1 36.946 203 119 5 9 207 13 210 4.24e-33 119
Msa0037730 AT5G62480.3 28.571 217 113 4 3 208 8 193 1.24e-23 94.7
Msa0037730 AT5G62480.2 28.571 217 114 4 3 208 8 194 1.58e-23 94.4
Msa0037730 AT1G78320.2 29.612 206 115 3 3 208 4 179 3.57e-20 85.1

Find 50 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGTATACCTTTCAAATTT+AGG 0.186037 1_1:+66848495 None:intergenic
ATAAAGCTCAAGCCCGATTT+TGG 0.200050 1_1:-66848292 Msa0037730:CDS
AGAAGGCTAAAGAGAATTTA+TGG 0.203200 1_1:-66847462 Msa0037730:CDS
TGGTATACCTTTCAAATTTA+GGG 0.227243 1_1:+66848496 None:intergenic
CATACAACCCTTAAAGTAAA+AGG 0.294008 1_1:+66848521 None:intergenic
AGGTGAAACTACATGGATTT+TGG 0.314704 1_1:-66848550 Msa0037730:CDS
CAATATATTTAACCCAAAAT+CGG 0.347669 1_1:+66848279 None:intergenic
GCCACCAACTTCTCTTGGTC+AGG 0.366758 1_1:+66847217 None:intergenic
TTGAATACATTGATGAGATA+TGG 0.380718 1_1:-66848349 Msa0037730:CDS
TCGGGCTTGAGCTTTATCAT+AGG 0.384698 1_1:+66848298 None:intergenic
AATGATCATGGACTCACATA+TGG 0.394155 1_1:+66848373 None:intergenic
TATTAAACCATAAATGCAAT+CGG 0.423005 1_1:+66847275 None:intergenic
CTTCAAGATTTCGGCGATTG+AGG 0.438196 1_1:-66847518 Msa0037730:intron
ATTAAACCATAAATGCAATC+GGG 0.438271 1_1:+66847276 None:intergenic
AATATATTTAACCCAAAATC+GGG 0.438660 1_1:+66848280 None:intergenic
AGTTGTTGAGGATCGGTGTT+TGG 0.448281 1_1:-66847428 Msa0037730:CDS
AGCATTGTAGACATAACTCT+TGG 0.468767 1_1:-66847370 Msa0037730:CDS
GAAAAGCCACCAACTTCTCT+TGG 0.471664 1_1:+66847212 None:intergenic
GAAGGCTAAAGAGAATTTAT+GGG 0.475049 1_1:-66847461 Msa0037730:CDS
TTTATGGTTTAATAATTTCA+AGG 0.475281 1_1:-66847266 Msa0037730:CDS
TCTTCCTCTATGTTCTCATA+TGG 0.483131 1_1:+66848476 None:intergenic
AATGTATTCAACAATGATCA+TGG 0.484642 1_1:+66848361 None:intergenic
GCTTTATCATAGGGATGAGC+AGG 0.495553 1_1:+66848308 None:intergenic
CGGGCTTGAGCTTTATCATA+GGG 0.503497 1_1:+66848299 None:intergenic
CACCCCTGACCAAGAGAAGT+TGG 0.508213 1_1:-66847221 Msa0037730:CDS
GGTTAAATATATTGATGGCA+TGG 0.511265 1_1:-66848270 Msa0037730:intron
TTTCCATCATGAACTAGCAC+TGG 0.520703 1_1:+66848398 None:intergenic
GGTTATATTGAAGAAGTTGA+GGG 0.524798 1_1:+66848438 None:intergenic
ATGATCATGGACTCACATAT+GGG 0.533497 1_1:+66848374 None:intergenic
AGAATATCTTGCAGAGTGAA+AGG 0.542132 1_1:-66847303 Msa0037730:CDS
GGGTTATATTGAAGAAGTTG+AGG 0.544588 1_1:+66848437 None:intergenic
GCTCTTCACAACTTATGCTA+TGG 0.547521 1_1:+66847488 None:intergenic
ATGGCAGAGGTGAAACTACA+TGG 0.553227 1_1:-66848557 Msa0037730:CDS
CCACCAACTTCTCTTGGTCA+GGG 0.554529 1_1:+66847218 None:intergenic
GTATGGACCCTAAATTTGAA+AGG 0.560566 1_1:-66848503 Msa0037730:CDS
GACTCAAAGTTGTTGAGGAT+CGG 0.561201 1_1:-66847435 Msa0037730:CDS
ACTCCAGTGCTAGTTCATGA+TGG 0.573621 1_1:-66848401 Msa0037730:CDS
GATCAGAAGAAATTCTATGC+GGG 0.579648 1_1:-66847403 Msa0037730:CDS
TTAAACCATAAATGCAATCG+GGG 0.593715 1_1:+66847277 None:intergenic
GGCGCGACTCAAAGTTGTTG+AGG 0.594370 1_1:-66847440 Msa0037730:CDS
AAGTTGTGAAGAGCGAGAGA+AGG 0.595648 1_1:-66847479 Msa0037730:CDS
CTTCACAACTTATGCTATGG+CGG 0.605752 1_1:+66847491 None:intergenic
CCCTGACCAAGAGAAGTTGG+TGG 0.608979 1_1:-66847218 Msa0037730:CDS
CAAGCTTAGGAGAATGGCAG+AGG 0.610526 1_1:-66848570 None:intergenic
CACCAACTTCTCTTGGTCAG+GGG 0.619146 1_1:+66847219 None:intergenic
GCAATCAAGACATCTTCTTG+AGG 0.623017 1_1:-66847163 None:intergenic
TATACCATATGAGAACATAG+AGG 0.675165 1_1:-66848480 Msa0037730:CDS
TAAACCATAAATGCAATCGG+GGG 0.688859 1_1:+66847278 None:intergenic
TGATCAGAAGAAATTCTATG+CGG 0.720599 1_1:-66847404 Msa0037730:CDS
GCAGGAAGCAATGAGTTGTG+TGG 0.742760 1_1:+66848326 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATAAAATACATCAT+TGG + chr1_1:66847499-66847518 None:intergenic 10.0%
!! ATATAATTTATCTTGATAAA+TGG - chr1_1:66847917-66847936 Msa0037730:intron 10.0%
!! ATAGATTATAGTTATAAAAT+AGG + chr1_1:66848078-66848097 None:intergenic 10.0%
!! AATAAAATAAAATACATCAT+TGG + chr1_1:66847499-66847518 None:intergenic 10.0%
!! ATATAATTTATCTTGATAAA+TGG - chr1_1:66847917-66847936 Msa0037730:intron 10.0%
!! ATAGATTATAGTTATAAAAT+AGG + chr1_1:66848078-66848097 None:intergenic 10.0%
!!! TTCTTTTGAAAAAACTAATT+GGG + chr1_1:66847598-66847617 None:intergenic 15.0%
!!! TTTCTTTTGAAAAAACTAAT+TGG + chr1_1:66847599-66847618 None:intergenic 15.0%
!! TTTAAAAACGTCAATAATAT+TGG + chr1_1:66847989-66848008 None:intergenic 15.0%
!! TTTATGGTTTAATAATTTCA+AGG - chr1_1:66848456-66848475 Msa0037730:CDS 15.0%
!!! TTCTTTTGAAAAAACTAATT+GGG + chr1_1:66847598-66847617 None:intergenic 15.0%
!!! TTTCTTTTGAAAAAACTAAT+TGG + chr1_1:66847599-66847618 None:intergenic 15.0%
!! TTTAAAAACGTCAATAATAT+TGG + chr1_1:66847989-66848008 None:intergenic 15.0%
!! TTTATGGTTTAATAATTTCA+AGG - chr1_1:66848456-66848475 Msa0037730:CDS 15.0%
!! AATATATTTAACCCAAAATC+GGG + chr1_1:66847445-66847464 None:intergenic 20.0%
!! CAATATATTTAACCCAAAAT+CGG + chr1_1:66847446-66847465 None:intergenic 20.0%
!!! TTTTGGGTTAAATATATTGA+TGG - chr1_1:66847447-66847466 Msa0037730:CDS 20.0%
!! AAAATATGACAAAGTTAGTT+TGG - chr1_1:66847962-66847981 Msa0037730:intron 20.0%
!! TTTGAAAACAATGAATTATG+AGG - chr1_1:66848048-66848067 Msa0037730:intron 20.0%
!! TTGAAAACAATGAATTATGA+GGG - chr1_1:66848049-66848068 Msa0037730:intron 20.0%
!! TATTAAACCATAAATGCAAT+CGG + chr1_1:66848450-66848469 None:intergenic 20.0%
!! TCTTCTAATTGAAAAAATCA+AGG - chr1_1:66848537-66848556 Msa0037730:CDS 20.0%
!! AATATATTTAACCCAAAATC+GGG + chr1_1:66847445-66847464 None:intergenic 20.0%
!! CAATATATTTAACCCAAAAT+CGG + chr1_1:66847446-66847465 None:intergenic 20.0%
!!! TTTTGGGTTAAATATATTGA+TGG - chr1_1:66847447-66847466 Msa0037730:CDS 20.0%
!! AAAATATGACAAAGTTAGTT+TGG - chr1_1:66847962-66847981 Msa0037730:intron 20.0%
!! TTTGAAAACAATGAATTATG+AGG - chr1_1:66848048-66848067 Msa0037730:intron 20.0%
!! TTGAAAACAATGAATTATGA+GGG - chr1_1:66848049-66848068 Msa0037730:intron 20.0%
!! TATTAAACCATAAATGCAAT+CGG + chr1_1:66848450-66848469 None:intergenic 20.0%
!! TCTTCTAATTGAAAAAATCA+AGG - chr1_1:66848537-66848556 Msa0037730:CDS 20.0%
! TGGTATACCTTTCAAATTTA+GGG + chr1_1:66847229-66847248 None:intergenic 25.0%
! ATGGTATACCTTTCAAATTT+AGG + chr1_1:66847230-66847249 None:intergenic 25.0%
! AATGTATTCAACAATGATCA+TGG + chr1_1:66847364-66847383 None:intergenic 25.0%
! TTGAATACATTGATGAGATA+TGG - chr1_1:66847373-66847392 Msa0037730:CDS 25.0%
!! GTTAGTTTGAATCATATCAA+TGG + chr1_1:66848165-66848184 None:intergenic 25.0%
! TTCAAACTAACAACACTATT+CGG - chr1_1:66848174-66848193 Msa0037730:intron 25.0%
! ATTAAACCATAAATGCAATC+GGG + chr1_1:66848449-66848468 None:intergenic 25.0%
! TGGTATACCTTTCAAATTTA+GGG + chr1_1:66847229-66847248 None:intergenic 25.0%
! ATGGTATACCTTTCAAATTT+AGG + chr1_1:66847230-66847249 None:intergenic 25.0%
! AATGTATTCAACAATGATCA+TGG + chr1_1:66847364-66847383 None:intergenic 25.0%
! TTGAATACATTGATGAGATA+TGG - chr1_1:66847373-66847392 Msa0037730:CDS 25.0%
!! GTTAGTTTGAATCATATCAA+TGG + chr1_1:66848165-66848184 None:intergenic 25.0%
! TTCAAACTAACAACACTATT+CGG - chr1_1:66848174-66848193 Msa0037730:intron 25.0%
! ATTAAACCATAAATGCAATC+GGG + chr1_1:66848449-66848468 None:intergenic 25.0%
! GTACAGTCCTTTTACTTTAA+GGG - chr1_1:66847194-66847213 Msa0037730:CDS 30.0%
CATACAACCCTTAAAGTAAA+AGG + chr1_1:66847204-66847223 None:intergenic 30.0%
!! CTTTTACTTTAAGGGTTGTA+TGG - chr1_1:66847202-66847221 Msa0037730:CDS 30.0%
TATACCATATGAGAACATAG+AGG - chr1_1:66847242-66847261 Msa0037730:CDS 30.0%
GGTTATATTGAAGAAGTTGA+GGG + chr1_1:66847287-66847306 None:intergenic 30.0%
! GGTTAAATATATTGATGGCA+TGG - chr1_1:66847452-66847471 Msa0037730:CDS 30.0%
! TTCCATCGTGATCATTTTAT+AGG - chr1_1:66847542-66847561 Msa0037730:intron 30.0%
TTATAGGCAAAAACTACACT+AGG - chr1_1:66847558-66847577 Msa0037730:intron 30.0%
!! ATCTCCATTTCTAGTTGAAA+TGG - chr1_1:66847766-66847785 Msa0037730:intron 30.0%
! TAAAATCGTTTGTAGTCTTG+GGG + chr1_1:66847805-66847824 None:intergenic 30.0%
CTAAAATCGTTTGTAGTCTT+GGG + chr1_1:66847806-66847825 None:intergenic 30.0%
! TCTAAAATCGTTTGTAGTCT+TGG + chr1_1:66847807-66847826 None:intergenic 30.0%
AGTTGTGTTTATAAGACACA+AGG + chr1_1:66848116-66848135 None:intergenic 30.0%
GGATCAATACTTCAAGATTT+CGG - chr1_1:66848195-66848214 Msa0037730:intron 30.0%
AGAAGGCTAAAGAGAATTTA+TGG - chr1_1:66848260-66848279 Msa0037730:intron 30.0%
GAAGGCTAAAGAGAATTTAT+GGG - chr1_1:66848261-66848280 Msa0037730:intron 30.0%
TGATCAGAAGAAATTCTATG+CGG - chr1_1:66848318-66848337 Msa0037730:CDS 30.0%
TTAAACCATAAATGCAATCG+GGG + chr1_1:66848448-66848467 None:intergenic 30.0%
! GTACAGTCCTTTTACTTTAA+GGG - chr1_1:66847194-66847213 Msa0037730:CDS 30.0%
CATACAACCCTTAAAGTAAA+AGG + chr1_1:66847204-66847223 None:intergenic 30.0%
!! CTTTTACTTTAAGGGTTGTA+TGG - chr1_1:66847202-66847221 Msa0037730:CDS 30.0%
TATACCATATGAGAACATAG+AGG - chr1_1:66847242-66847261 Msa0037730:CDS 30.0%
GGTTATATTGAAGAAGTTGA+GGG + chr1_1:66847287-66847306 None:intergenic 30.0%
! GGTTAAATATATTGATGGCA+TGG - chr1_1:66847452-66847471 Msa0037730:CDS 30.0%
! TTCCATCGTGATCATTTTAT+AGG - chr1_1:66847542-66847561 Msa0037730:intron 30.0%
TTATAGGCAAAAACTACACT+AGG - chr1_1:66847558-66847577 Msa0037730:intron 30.0%
!! ATCTCCATTTCTAGTTGAAA+TGG - chr1_1:66847766-66847785 Msa0037730:intron 30.0%
! TAAAATCGTTTGTAGTCTTG+GGG + chr1_1:66847805-66847824 None:intergenic 30.0%
CTAAAATCGTTTGTAGTCTT+GGG + chr1_1:66847806-66847825 None:intergenic 30.0%
! TCTAAAATCGTTTGTAGTCT+TGG + chr1_1:66847807-66847826 None:intergenic 30.0%
AGTTGTGTTTATAAGACACA+AGG + chr1_1:66848116-66848135 None:intergenic 30.0%
GGATCAATACTTCAAGATTT+CGG - chr1_1:66848195-66848214 Msa0037730:intron 30.0%
AGAAGGCTAAAGAGAATTTA+TGG - chr1_1:66848260-66848279 Msa0037730:intron 30.0%
GAAGGCTAAAGAGAATTTAT+GGG - chr1_1:66848261-66848280 Msa0037730:intron 30.0%
TGATCAGAAGAAATTCTATG+CGG - chr1_1:66848318-66848337 Msa0037730:CDS 30.0%
TTAAACCATAAATGCAATCG+GGG + chr1_1:66848448-66848467 None:intergenic 30.0%
! AGGTGAAACTACATGGATTT+TGG - chr1_1:66847172-66847191 Msa0037730:CDS 35.0%
! GGTACAGTCCTTTTACTTTA+AGG - chr1_1:66847193-66847212 Msa0037730:CDS 35.0%
GTATGGACCCTAAATTTGAA+AGG - chr1_1:66847219-66847238 Msa0037730:CDS 35.0%
TCTTCCTCTATGTTCTCATA+TGG + chr1_1:66847249-66847268 None:intergenic 35.0%
GGGTTATATTGAAGAAGTTG+AGG + chr1_1:66847288-66847307 None:intergenic 35.0%
ATGATCATGGACTCACATAT+GGG + chr1_1:66847351-66847370 None:intergenic 35.0%
AATGATCATGGACTCACATA+TGG + chr1_1:66847352-66847371 None:intergenic 35.0%
TGCCTATAAAATGATCACGA+TGG + chr1_1:66847547-66847566 None:intergenic 35.0%
TCGTTAGAGCATATAAGGTA+AGG + chr1_1:66848140-66848159 None:intergenic 35.0%
TGGTATCGTTAGAGCATATA+AGG + chr1_1:66848145-66848164 None:intergenic 35.0%
GATCAGAAGAAATTCTATGC+GGG - chr1_1:66848319-66848338 Msa0037730:CDS 35.0%
AGCATTGTAGACATAACTCT+TGG - chr1_1:66848352-66848371 Msa0037730:CDS 35.0%
AGAATATCTTGCAGAGTGAA+AGG - chr1_1:66848419-66848438 Msa0037730:CDS 35.0%
TAAACCATAAATGCAATCGG+GGG + chr1_1:66848447-66848466 None:intergenic 35.0%
! AGGTGAAACTACATGGATTT+TGG - chr1_1:66847172-66847191 Msa0037730:CDS 35.0%
! GGTACAGTCCTTTTACTTTA+AGG - chr1_1:66847193-66847212 Msa0037730:CDS 35.0%
GTATGGACCCTAAATTTGAA+AGG - chr1_1:66847219-66847238 Msa0037730:CDS 35.0%
TCTTCCTCTATGTTCTCATA+TGG + chr1_1:66847249-66847268 None:intergenic 35.0%
GGGTTATATTGAAGAAGTTG+AGG + chr1_1:66847288-66847307 None:intergenic 35.0%
ATGATCATGGACTCACATAT+GGG + chr1_1:66847351-66847370 None:intergenic 35.0%
AATGATCATGGACTCACATA+TGG + chr1_1:66847352-66847371 None:intergenic 35.0%
TGCCTATAAAATGATCACGA+TGG + chr1_1:66847547-66847566 None:intergenic 35.0%
TCGTTAGAGCATATAAGGTA+AGG + chr1_1:66848140-66848159 None:intergenic 35.0%
TGGTATCGTTAGAGCATATA+AGG + chr1_1:66848145-66848164 None:intergenic 35.0%
GATCAGAAGAAATTCTATGC+GGG - chr1_1:66848319-66848338 Msa0037730:CDS 35.0%
AGCATTGTAGACATAACTCT+TGG - chr1_1:66848352-66848371 Msa0037730:CDS 35.0%
AGAATATCTTGCAGAGTGAA+AGG - chr1_1:66848419-66848438 Msa0037730:CDS 35.0%
TAAACCATAAATGCAATCGG+GGG + chr1_1:66848447-66848466 None:intergenic 35.0%
!! CTGGAGTATTTTTGCGTACT+GGG + chr1_1:66847308-66847327 None:intergenic 40.0%
!! ACTGGAGTATTTTTGCGTAC+TGG + chr1_1:66847309-66847328 None:intergenic 40.0%
TTTCCATCATGAACTAGCAC+TGG + chr1_1:66847327-66847346 None:intergenic 40.0%
! ATAAAGCTCAAGCCCGATTT+TGG - chr1_1:66847430-66847449 Msa0037730:CDS 40.0%
! TAAAGCTCAAGCCCGATTTT+GGG - chr1_1:66847431-66847450 Msa0037730:CDS 40.0%
CTCGCCATTTCAACTAGAAA+TGG + chr1_1:66847773-66847792 None:intergenic 40.0%
!! CATTTCTAGTTGAAATGGCG+AGG - chr1_1:66847771-66847790 Msa0037730:intron 40.0%
CTTCACAACTTATGCTATGG+CGG + chr1_1:66848234-66848253 None:intergenic 40.0%
GCTCTTCACAACTTATGCTA+TGG + chr1_1:66848237-66848256 None:intergenic 40.0%
GACTCAAAGTTGTTGAGGAT+CGG - chr1_1:66848287-66848306 Msa0037730:CDS 40.0%
!! CTGGAGTATTTTTGCGTACT+GGG + chr1_1:66847308-66847327 None:intergenic 40.0%
!! ACTGGAGTATTTTTGCGTAC+TGG + chr1_1:66847309-66847328 None:intergenic 40.0%
TTTCCATCATGAACTAGCAC+TGG + chr1_1:66847327-66847346 None:intergenic 40.0%
! ATAAAGCTCAAGCCCGATTT+TGG - chr1_1:66847430-66847449 Msa0037730:CDS 40.0%
! TAAAGCTCAAGCCCGATTTT+GGG - chr1_1:66847431-66847450 Msa0037730:CDS 40.0%
CTCGCCATTTCAACTAGAAA+TGG + chr1_1:66847773-66847792 None:intergenic 40.0%
!! CATTTCTAGTTGAAATGGCG+AGG - chr1_1:66847771-66847790 Msa0037730:intron 40.0%
CTTCACAACTTATGCTATGG+CGG + chr1_1:66848234-66848253 None:intergenic 40.0%
GCTCTTCACAACTTATGCTA+TGG + chr1_1:66848237-66848256 None:intergenic 40.0%
GACTCAAAGTTGTTGAGGAT+CGG - chr1_1:66848287-66848306 Msa0037730:CDS 40.0%
ATGGCAGAGGTGAAACTACA+TGG - chr1_1:66847165-66847184 Msa0037730:CDS 45.0%
ACTCCAGTGCTAGTTCATGA+TGG - chr1_1:66847321-66847340 Msa0037730:CDS 45.0%
GCTTTATCATAGGGATGAGC+AGG + chr1_1:66847417-66847436 None:intergenic 45.0%
! CGGGCTTGAGCTTTATCATA+GGG + chr1_1:66847426-66847445 None:intergenic 45.0%
! TCGGGCTTGAGCTTTATCAT+AGG + chr1_1:66847427-66847446 None:intergenic 45.0%
CTTCAAGATTTCGGCGATTG+AGG - chr1_1:66848204-66848223 Msa0037730:intron 45.0%
AAGTTGTGAAGAGCGAGAGA+AGG - chr1_1:66848243-66848262 Msa0037730:intron 45.0%
! AGTTGTTGAGGATCGGTGTT+TGG - chr1_1:66848294-66848313 Msa0037730:CDS 45.0%
!! GGGGTGTTTTCTTTGATGAC+TGG + chr1_1:66848487-66848506 None:intergenic 45.0%
GAAAAGCCACCAACTTCTCT+TGG + chr1_1:66848513-66848532 None:intergenic 45.0%
ATGGCAGAGGTGAAACTACA+TGG - chr1_1:66847165-66847184 Msa0037730:CDS 45.0%
ACTCCAGTGCTAGTTCATGA+TGG - chr1_1:66847321-66847340 Msa0037730:CDS 45.0%
GCTTTATCATAGGGATGAGC+AGG + chr1_1:66847417-66847436 None:intergenic 45.0%
! CGGGCTTGAGCTTTATCATA+GGG + chr1_1:66847426-66847445 None:intergenic 45.0%
! TCGGGCTTGAGCTTTATCAT+AGG + chr1_1:66847427-66847446 None:intergenic 45.0%
CTTCAAGATTTCGGCGATTG+AGG - chr1_1:66848204-66848223 Msa0037730:intron 45.0%
AAGTTGTGAAGAGCGAGAGA+AGG - chr1_1:66848243-66848262 Msa0037730:intron 45.0%
! AGTTGTTGAGGATCGGTGTT+TGG - chr1_1:66848294-66848313 Msa0037730:CDS 45.0%
!! GGGGTGTTTTCTTTGATGAC+TGG + chr1_1:66848487-66848506 None:intergenic 45.0%
GAAAAGCCACCAACTTCTCT+TGG + chr1_1:66848513-66848532 None:intergenic 45.0%
GCAGGAAGCAATGAGTTGTG+TGG + chr1_1:66847399-66847418 None:intergenic 50.0%
GGTTCCCCCGATTGCATTTA+TGG - chr1_1:66848440-66848459 Msa0037730:CDS 50.0%
CACCAACTTCTCTTGGTCAG+GGG + chr1_1:66848506-66848525 None:intergenic 50.0%
CCACCAACTTCTCTTGGTCA+GGG + chr1_1:66848507-66848526 None:intergenic 50.0%
GCAGGAAGCAATGAGTTGTG+TGG + chr1_1:66847399-66847418 None:intergenic 50.0%
GGTTCCCCCGATTGCATTTA+TGG - chr1_1:66848440-66848459 Msa0037730:CDS 50.0%
CACCAACTTCTCTTGGTCAG+GGG + chr1_1:66848506-66848525 None:intergenic 50.0%
CCACCAACTTCTCTTGGTCA+GGG + chr1_1:66848507-66848526 None:intergenic 50.0%
GGCGCGACTCAAAGTTGTTG+AGG - chr1_1:66848282-66848301 Msa0037730:CDS 55.0%
CACCCCTGACCAAGAGAAGT+TGG - chr1_1:66848501-66848520 Msa0037730:CDS 55.0%
CCCTGACCAAGAGAAGTTGG+TGG - chr1_1:66848504-66848523 Msa0037730:CDS 55.0%
GCCACCAACTTCTCTTGGTC+AGG + chr1_1:66848508-66848527 None:intergenic 55.0%
GGCGCGACTCAAAGTTGTTG+AGG - chr1_1:66848282-66848301 Msa0037730:CDS 55.0%
CACCCCTGACCAAGAGAAGT+TGG - chr1_1:66848501-66848520 Msa0037730:CDS 55.0%
CCCTGACCAAGAGAAGTTGG+TGG - chr1_1:66848504-66848523 Msa0037730:CDS 55.0%
GCCACCAACTTCTCTTGGTC+AGG + chr1_1:66848508-66848527 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 66847165 66848579 66847165 ID=Msa0037730;Name=Msa0037730
chr1_1 mRNA 66847165 66848579 66847165 ID=Msa0037730-mRNA-1;Parent=Msa0037730;Name=Msa0037730-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0|0|1|1|1|2|0|225
chr1_1 exon 66848271 66848579 66848271 ID=Msa0037730-mRNA-1:exon:21650;Parent=Msa0037730-mRNA-1
chr1_1 exon 66847165 66847533 66847165 ID=Msa0037730-mRNA-1:exon:21649;Parent=Msa0037730-mRNA-1
chr1_1 CDS 66848271 66848579 66848271 ID=Msa0037730-mRNA-1:cds;Parent=Msa0037730-mRNA-1
chr1_1 CDS 66847165 66847533 66847165 ID=Msa0037730-mRNA-1:cds;Parent=Msa0037730-mRNA-1
Gene Sequence

>Msa0037730

ATGGCAGAGGTGAAACTACATGGATTTTGGTACAGTCCTTTTACTTTAAGGGTTGTATGGACCCTAAATTTGAAAGGTATACCATATGAGAACATAGAGGAAGATCGTTTCAATAAGAGCCCTCAACTTCTTCAATATAACCCAGTACGCAAAAATACTCCAGTGCTAGTTCATGATGGAAAACCCATATGTGAGTCCATGATCATTGTTGAATACATTGATGAGATATGGCCACACAACTCATTGCTTCCTGCTCATCCCTATGATAAAGCTCAAGCCCGATTTTGGGTTAAATATATTGATGGCATGATTTCGGCGATTGAGGCATTCCGCCATAGCATAAGTTGTGAAGAGCGAGAGAAGGCTAAAGAGAATTTATGGGCGCGACTCAAAGTTGTTGAGGATCGGTGTTTGGATGATCAGAAGAAATTCTATGCGGGAGACAACGTTAGCATTGTAGACATAACTCTTGGATCATTTGTCAAATTTATTGAAGTTCAAGAAGATATATTTGAAGAGAATATCTTGCAGAGTGAAAGGTTCCCCCGATTGCATTTATGGTTTAATAATTTCAAGGATGTTCCAGTCATCAAAGAAAACACCCCTGACCAAGAGAAGTTGGTGGCTTTTCATAATCTTCTAATTGAAAAAATCAAGGCAATCAAGACATCTTCTTGA

Protein sequence

>Msa0037730

MAEVKLHGFWYSPFTLRVVWTLNLKGIPYENIEEDRFNKSPQLLQYNPVRKNTPVLVHDGKPICESMIIVEYIDEIWPHNSLLPAHPYDKAQARFWVKYIDGMISAIEAFRHSISCEEREKAKENLWARLKVVEDRCLDDQKKFYAGDNVSIVDITLGSFVKFIEVQEDIFEENILQSERFPRLHLWFNNFKDVPVIKENTPDQEKLVAFHNLLIEKIKAIKTSS*