Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0037730 | XP_003591638.2 | 93.333 | 225 | 15 | 0 | 1 | 225 | 1 | 225 | 3.45e-155 | 439 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0037730 | sp|Q03662|GSTX1_TOBAC | 45.755 | 212 | 110 | 3 | 1 | 211 | 1 | 208 | 6.01e-55 | 178 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0036230 | Msa0037730 | 0.801424 | 9.063863e-49 | -8.615850e-47 |
Msa0037730 | Msa0048950 | 0.821176 | 4.640849e-53 | -8.615850e-47 |
Msa0037730 | Msa0059880 | 0.813136 | 2.981199e-51 | -8.615850e-47 |
Msa0037730 | Msa0072030 | 0.801406 | 9.140832e-49 | -8.615850e-47 |
Msa0037730 | Msa0083250 | 0.812562 | 3.982388e-51 | -8.615850e-47 |
Msa0037730 | Msa0120070 | 0.807748 | 4.343859e-50 | -8.615850e-47 |
Msa0037730 | Msa0147670 | 0.802781 | 4.766924e-49 | -8.615850e-47 |
Msa0037730 | Msa0163340 | 0.805616 | 1.224628e-49 | -8.615850e-47 |
Msa0037730 | Msa0163370 | 0.825534 | 4.447447e-54 | -8.615850e-47 |
Msa0037730 | Msa0197750 | 0.816108 | 6.552690e-52 | -8.615850e-47 |
Msa0037730 | Msa0277280 | 0.805467 | 1.316396e-49 | -8.615850e-47 |
Msa0037730 | Msa0298270 | 0.808180 | 3.514638e-50 | -8.615850e-47 |
Msa0037730 | Msa0543740 | 0.834917 | 2.271800e-56 | -8.615850e-47 |
Msa0037730 | Msa0548970 | 0.821598 | 3.708552e-53 | -8.615850e-47 |
Msa0037730 | Msa0591490 | 0.805944 | 1.045044e-49 | -8.615850e-47 |
Msa0037730 | Msa0631700 | 0.804349 | 2.254681e-49 | -8.615850e-47 |
Msa0037730 | Msa0640290 | 0.817624 | 2.994344e-52 | -8.615850e-47 |
Msa0037730 | Msa0678620 | 0.822591 | 2.182354e-53 | -8.615850e-47 |
Msa0037730 | Msa0684720 | 0.823027 | 1.727522e-53 | -8.615850e-47 |
Msa0037730 | Msa0727480 | 0.805769 | 1.137311e-49 | -8.615850e-47 |
Msa0037730 | Msa0735280 | 0.830865 | 2.308013e-55 | -8.615850e-47 |
Msa0037730 | Msa0777250 | 0.827212 | 1.772027e-54 | -8.615850e-47 |
Msa0037730 | Msa0814230 | 0.807894 | 4.043603e-50 | -8.615850e-47 |
Msa0037730 | Msa0883640 | 0.815970 | 7.037752e-52 | -8.615850e-47 |
Msa0037730 | Msa0896920 | 0.814092 | 1.837209e-51 | -8.615850e-47 |
Msa0037730 | Msa0910830 | 0.815864 | 7.428823e-52 | -8.615850e-47 |
Msa0037730 | Msa0913550 | 0.819842 | 9.389763e-53 | -8.615850e-47 |
Msa0037730 | Msa0951150 | 0.808460 | 3.063787e-50 | -8.615850e-47 |
Msa0037730 | Msa0960090 | 0.817685 | 2.901245e-52 | -8.615850e-47 |
Msa0037730 | Msa0985700 | 0.817560 | 3.094908e-52 | -8.615850e-47 |
Msa0037730 | Msa1021620 | 0.817490 | 3.209862e-52 | -8.615850e-47 |
Msa0037730 | Msa1061670 | 0.809211 | 2.116168e-50 | -8.615850e-47 |
Msa0037730 | Msa1109890 | 0.806937 | 6.455039e-50 | -8.615850e-47 |
Msa0037730 | Msa1269050 | 0.813805 | 2.125780e-51 | -8.615850e-47 |
Msa0037730 | Msa1323030 | 0.809030 | 2.314471e-50 | -8.615850e-47 |
Msa0037730 | Msa1323120 | 0.810757 | 9.834448e-51 | -8.615850e-47 |
Msa0037730 | Msa1445900 | 0.824627 | 7.285732e-54 | -8.615850e-47 |
Msa0037730 | Msa1459610 | 0.817103 | 3.921536e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0037730 | MtrunA17_Chr1g0196711 | 93.333 | 225 | 15 | 0 | 1 | 225 | 1 | 225 | 3.17e-159 | 439 |
Msa0037730 | MtrunA17_Chr1g0196661 | 82.222 | 225 | 40 | 0 | 1 | 225 | 1 | 225 | 4.05e-140 | 391 |
Msa0037730 | MtrunA17_Chr1g0196721 | 83.256 | 215 | 36 | 0 | 4 | 218 | 3 | 217 | 1.84e-133 | 374 |
Msa0037730 | MtrunA17_Chr1g0196691 | 78.733 | 221 | 46 | 1 | 1 | 220 | 26 | 246 | 3.09e-127 | 359 |
Msa0037730 | MtrunA17_Chr4g0029341 | 66.977 | 215 | 71 | 0 | 3 | 217 | 4 | 218 | 3.33e-105 | 302 |
Msa0037730 | MtrunA17_Chr1g0212301 | 47.143 | 210 | 108 | 2 | 1 | 208 | 1 | 209 | 4.46e-63 | 196 |
Msa0037730 | MtrunA17_Chr3g0132581 | 44.595 | 222 | 111 | 5 | 1 | 214 | 1 | 218 | 4.42e-57 | 180 |
Msa0037730 | MtrunA17_Chr1g0196771 | 44.076 | 211 | 115 | 2 | 1 | 210 | 1 | 209 | 6.49e-57 | 180 |
Msa0037730 | MtrunA17_Chr4g0008791 | 41.905 | 210 | 118 | 2 | 2 | 210 | 6 | 212 | 9.15e-53 | 169 |
Msa0037730 | MtrunA17_Chr7g0240511 | 42.534 | 221 | 118 | 4 | 3 | 222 | 7 | 219 | 3.50e-52 | 167 |
Msa0037730 | MtrunA17_Chr4g0008781 | 43.810 | 210 | 112 | 3 | 3 | 210 | 8 | 213 | 1.02e-51 | 166 |
Msa0037730 | MtrunA17_Chr8g0379581 | 41.818 | 220 | 118 | 2 | 3 | 214 | 5 | 222 | 9.20e-51 | 164 |
Msa0037730 | MtrunA17_Chr7g0240641 | 44.286 | 210 | 109 | 5 | 4 | 210 | 8 | 212 | 2.20e-50 | 163 |
Msa0037730 | MtrunA17_Chr6g0483141 | 40.175 | 229 | 125 | 3 | 1 | 224 | 1 | 222 | 8.88e-50 | 162 |
Msa0037730 | MtrunA17_Chr7g0240561 | 40.541 | 222 | 126 | 3 | 3 | 222 | 7 | 224 | 8.95e-50 | 162 |
Msa0037730 | MtrunA17_Chr7g0240681 | 42.857 | 210 | 115 | 2 | 3 | 210 | 7 | 213 | 4.10e-49 | 160 |
Msa0037730 | MtrunA17_Chr5g0417011 | 40.654 | 214 | 119 | 4 | 2 | 209 | 6 | 217 | 2.15e-48 | 158 |
Msa0037730 | MtrunA17_Chr7g0240631 | 42.009 | 219 | 121 | 4 | 4 | 220 | 8 | 222 | 2.64e-48 | 158 |
Msa0037730 | MtrunA17_Chr7g0240691 | 40.952 | 210 | 119 | 2 | 3 | 210 | 37 | 243 | 8.36e-47 | 155 |
Msa0037730 | MtrunA17_Chr7g0240611 | 40.183 | 219 | 123 | 3 | 3 | 220 | 7 | 218 | 1.06e-46 | 154 |
Msa0037730 | MtrunA17_Chr7g0240581 | 38.914 | 221 | 129 | 4 | 4 | 222 | 8 | 224 | 2.14e-46 | 153 |
Msa0037730 | MtrunA17_Chr2g0312721 | 40.191 | 209 | 120 | 3 | 3 | 210 | 4 | 208 | 1.34e-45 | 151 |
Msa0037730 | MtrunA17_Chr2g0312771 | 41.627 | 209 | 117 | 3 | 3 | 210 | 4 | 208 | 2.92e-45 | 150 |
Msa0037730 | MtrunA17_Chr7g0240671 | 39.904 | 208 | 117 | 3 | 4 | 210 | 5 | 205 | 3.61e-45 | 150 |
Msa0037730 | MtrunA17_Chr2g0312811 | 40.758 | 211 | 118 | 4 | 3 | 210 | 4 | 210 | 4.52e-45 | 149 |
Msa0037730 | MtrunA17_Chr5g0415411 | 38.889 | 216 | 122 | 4 | 3 | 210 | 5 | 218 | 7.86e-45 | 149 |
Msa0037730 | MtrunA17_Chr2g0312751 | 41.148 | 209 | 118 | 3 | 3 | 210 | 4 | 208 | 1.70e-44 | 148 |
Msa0037730 | MtrunA17_Chr2g0312791 | 42.180 | 211 | 115 | 5 | 3 | 210 | 4 | 210 | 2.96e-44 | 147 |
Msa0037730 | MtrunA17_Chr8g0379561 | 39.904 | 208 | 123 | 1 | 3 | 210 | 6 | 211 | 6.47e-44 | 147 |
Msa0037730 | MtrunA17_Chr7g0240551 | 38.571 | 210 | 125 | 2 | 3 | 211 | 7 | 213 | 6.71e-44 | 147 |
Msa0037730 | MtrunA17_Chr2g0312731 | 38.605 | 215 | 124 | 4 | 3 | 216 | 4 | 211 | 8.78e-44 | 146 |
Msa0037730 | MtrunA17_Chr8g0363751 | 39.912 | 228 | 125 | 6 | 2 | 220 | 4 | 228 | 5.87e-43 | 144 |
Msa0037730 | MtrunA17_Chr2g0312781 | 38.605 | 215 | 124 | 4 | 3 | 216 | 21 | 228 | 1.33e-42 | 144 |
Msa0037730 | MtrunA17_Chr7g0240541 | 38.571 | 210 | 125 | 2 | 3 | 211 | 7 | 213 | 1.55e-42 | 143 |
Msa0037730 | MtrunA17_Chr7g0240521 | 40.359 | 223 | 126 | 5 | 3 | 222 | 14 | 232 | 3.04e-42 | 142 |
Msa0037730 | MtrunA17_Chr7g0240661 | 42.180 | 211 | 110 | 4 | 3 | 210 | 7 | 208 | 6.74e-41 | 139 |
Msa0037730 | MtrunA17_Chr7g0240531 | 37.619 | 210 | 127 | 2 | 3 | 211 | 7 | 213 | 8.63e-41 | 139 |
Msa0037730 | MtrunA17_Chr7g0240651 | 40.476 | 210 | 115 | 4 | 3 | 210 | 7 | 208 | 3.67e-40 | 137 |
Msa0037730 | MtrunA17_Chr3g0107741 | 39.423 | 208 | 121 | 4 | 4 | 210 | 10 | 213 | 2.94e-38 | 132 |
Msa0037730 | MtrunA17_Chr2g0312681 | 38.756 | 209 | 123 | 3 | 3 | 210 | 4 | 208 | 2.68e-37 | 129 |
Msa0037730 | MtrunA17_Chr3g0107731 | 38.095 | 210 | 125 | 3 | 2 | 210 | 8 | 213 | 8.86e-37 | 128 |
Msa0037730 | MtrunA17_Chr4g0069471 | 44.118 | 170 | 91 | 3 | 3 | 170 | 25 | 192 | 2.97e-36 | 126 |
Msa0037730 | MtrunA17_Chr8g0357241 | 38.614 | 202 | 119 | 4 | 10 | 210 | 11 | 208 | 2.38e-35 | 124 |
Msa0037730 | MtrunA17_Chr2g0312691 | 38.756 | 209 | 123 | 3 | 3 | 210 | 4 | 208 | 2.60e-34 | 122 |
Msa0037730 | MtrunA17_Chr8g0357211 | 37.129 | 202 | 122 | 3 | 10 | 210 | 11 | 208 | 4.03e-34 | 121 |
Msa0037730 | MtrunA17_Chr2g0312711 | 39.130 | 207 | 118 | 5 | 3 | 207 | 4 | 204 | 3.16e-33 | 119 |
Msa0037730 | MtrunA17_Chr8g0391631 | 43.125 | 160 | 79 | 6 | 1 | 151 | 19 | 175 | 9.68e-32 | 114 |
Msa0037730 | MtrunA17_Chr5g0433801 | 35.468 | 203 | 126 | 3 | 9 | 210 | 12 | 210 | 7.26e-31 | 113 |
Msa0037730 | MtrunA17_Chr2g0313561 | 62.500 | 56 | 20 | 1 | 47 | 101 | 2 | 57 | 1.50e-19 | 79.7 |
Msa0037730 | MtrunA17_Chr5g0415421 | 45.946 | 74 | 37 | 1 | 27 | 97 | 11 | 84 | 1.45e-13 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0037730 | AT2G29470.1 | 38.914 | 221 | 129 | 5 | 4 | 221 | 8 | 225 | 1.93e-50 | 164 |
Msa0037730 | AT3G09270.1 | 44.393 | 214 | 103 | 7 | 4 | 209 | 7 | 212 | 3.78e-48 | 158 |
Msa0037730 | AT2G29460.1 | 36.986 | 219 | 135 | 2 | 3 | 220 | 7 | 223 | 1.06e-47 | 157 |
Msa0037730 | AT2G29490.1 | 39.269 | 219 | 128 | 4 | 4 | 220 | 8 | 223 | 1.18e-46 | 154 |
Msa0037730 | AT2G29450.1 | 38.182 | 220 | 132 | 3 | 3 | 220 | 6 | 223 | 1.31e-46 | 154 |
Msa0037730 | AT1G10370.1 | 39.732 | 224 | 130 | 3 | 2 | 220 | 4 | 227 | 3.47e-46 | 153 |
Msa0037730 | AT1G59670.1 | 39.720 | 214 | 123 | 4 | 3 | 210 | 6 | 219 | 7.45e-46 | 152 |
Msa0037730 | AT2G29420.1 | 38.426 | 216 | 131 | 1 | 3 | 218 | 9 | 222 | 3.47e-45 | 150 |
Msa0037730 | AT1G59700.1 | 39.252 | 214 | 124 | 4 | 3 | 210 | 6 | 219 | 2.24e-43 | 146 |
Msa0037730 | AT2G29480.1 | 37.443 | 219 | 132 | 4 | 4 | 220 | 8 | 223 | 2.49e-43 | 145 |
Msa0037730 | AT1G10360.1 | 39.462 | 223 | 130 | 3 | 3 | 220 | 5 | 227 | 1.18e-42 | 144 |
Msa0037730 | AT2G29440.1 | 36.937 | 222 | 131 | 5 | 3 | 220 | 6 | 222 | 4.62e-42 | 142 |
Msa0037730 | AT1G78370.1 | 37.864 | 206 | 123 | 4 | 6 | 210 | 7 | 208 | 1.57e-41 | 140 |
Msa0037730 | AT1G74590.1 | 37.264 | 212 | 130 | 2 | 2 | 210 | 6 | 217 | 2.88e-41 | 140 |
Msa0037730 | AT1G78380.1 | 39.352 | 216 | 126 | 4 | 3 | 217 | 4 | 215 | 2.65e-40 | 137 |
Msa0037730 | AT5G62480.1 | 35.909 | 220 | 120 | 5 | 3 | 208 | 8 | 220 | 6.18e-40 | 137 |
Msa0037730 | AT1G17180.1 | 37.799 | 209 | 125 | 4 | 3 | 210 | 4 | 208 | 7.88e-40 | 136 |
Msa0037730 | AT1G78340.1 | 38.278 | 209 | 124 | 3 | 3 | 210 | 4 | 208 | 1.28e-39 | 136 |
Msa0037730 | AT1G78320.1 | 38.164 | 207 | 123 | 3 | 3 | 208 | 4 | 206 | 1.49e-39 | 135 |
Msa0037730 | AT1G17170.1 | 38.278 | 209 | 123 | 4 | 3 | 210 | 4 | 207 | 1.87e-38 | 133 |
Msa0037730 | AT1G69930.1 | 37.557 | 221 | 120 | 4 | 4 | 213 | 13 | 226 | 4.13e-38 | 132 |
Msa0037730 | AT3G43800.1 | 40.670 | 209 | 117 | 4 | 3 | 207 | 5 | 210 | 1.45e-37 | 131 |
Msa0037730 | AT1G78360.1 | 37.441 | 211 | 126 | 5 | 2 | 210 | 3 | 209 | 4.92e-37 | 129 |
Msa0037730 | AT1G69920.1 | 35.211 | 213 | 132 | 4 | 4 | 210 | 35 | 247 | 1.05e-35 | 127 |
Msa0037730 | AT1G17190.1 | 33.790 | 219 | 140 | 4 | 3 | 220 | 5 | 219 | 4.36e-34 | 122 |
Msa0037730 | AT1G27130.1 | 35.211 | 213 | 132 | 4 | 4 | 210 | 7 | 219 | 6.13e-34 | 121 |
Msa0037730 | AT1G27140.1 | 35.294 | 221 | 136 | 4 | 4 | 217 | 7 | 227 | 1.49e-33 | 121 |
Msa0037730 | AT1G53680.1 | 36.946 | 203 | 119 | 5 | 9 | 207 | 13 | 210 | 4.24e-33 | 119 |
Msa0037730 | AT5G62480.3 | 28.571 | 217 | 113 | 4 | 3 | 208 | 8 | 193 | 1.24e-23 | 94.7 |
Msa0037730 | AT5G62480.2 | 28.571 | 217 | 114 | 4 | 3 | 208 | 8 | 194 | 1.58e-23 | 94.4 |
Msa0037730 | AT1G78320.2 | 29.612 | 206 | 115 | 3 | 3 | 208 | 4 | 179 | 3.57e-20 | 85.1 |
Find 50 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGGTATACCTTTCAAATTT+AGG | 0.186037 | 1_1:+66848495 | None:intergenic |
ATAAAGCTCAAGCCCGATTT+TGG | 0.200050 | 1_1:-66848292 | Msa0037730:CDS |
AGAAGGCTAAAGAGAATTTA+TGG | 0.203200 | 1_1:-66847462 | Msa0037730:CDS |
TGGTATACCTTTCAAATTTA+GGG | 0.227243 | 1_1:+66848496 | None:intergenic |
CATACAACCCTTAAAGTAAA+AGG | 0.294008 | 1_1:+66848521 | None:intergenic |
AGGTGAAACTACATGGATTT+TGG | 0.314704 | 1_1:-66848550 | Msa0037730:CDS |
CAATATATTTAACCCAAAAT+CGG | 0.347669 | 1_1:+66848279 | None:intergenic |
GCCACCAACTTCTCTTGGTC+AGG | 0.366758 | 1_1:+66847217 | None:intergenic |
TTGAATACATTGATGAGATA+TGG | 0.380718 | 1_1:-66848349 | Msa0037730:CDS |
TCGGGCTTGAGCTTTATCAT+AGG | 0.384698 | 1_1:+66848298 | None:intergenic |
AATGATCATGGACTCACATA+TGG | 0.394155 | 1_1:+66848373 | None:intergenic |
TATTAAACCATAAATGCAAT+CGG | 0.423005 | 1_1:+66847275 | None:intergenic |
CTTCAAGATTTCGGCGATTG+AGG | 0.438196 | 1_1:-66847518 | Msa0037730:intron |
ATTAAACCATAAATGCAATC+GGG | 0.438271 | 1_1:+66847276 | None:intergenic |
AATATATTTAACCCAAAATC+GGG | 0.438660 | 1_1:+66848280 | None:intergenic |
AGTTGTTGAGGATCGGTGTT+TGG | 0.448281 | 1_1:-66847428 | Msa0037730:CDS |
AGCATTGTAGACATAACTCT+TGG | 0.468767 | 1_1:-66847370 | Msa0037730:CDS |
GAAAAGCCACCAACTTCTCT+TGG | 0.471664 | 1_1:+66847212 | None:intergenic |
GAAGGCTAAAGAGAATTTAT+GGG | 0.475049 | 1_1:-66847461 | Msa0037730:CDS |
TTTATGGTTTAATAATTTCA+AGG | 0.475281 | 1_1:-66847266 | Msa0037730:CDS |
TCTTCCTCTATGTTCTCATA+TGG | 0.483131 | 1_1:+66848476 | None:intergenic |
AATGTATTCAACAATGATCA+TGG | 0.484642 | 1_1:+66848361 | None:intergenic |
GCTTTATCATAGGGATGAGC+AGG | 0.495553 | 1_1:+66848308 | None:intergenic |
CGGGCTTGAGCTTTATCATA+GGG | 0.503497 | 1_1:+66848299 | None:intergenic |
CACCCCTGACCAAGAGAAGT+TGG | 0.508213 | 1_1:-66847221 | Msa0037730:CDS |
GGTTAAATATATTGATGGCA+TGG | 0.511265 | 1_1:-66848270 | Msa0037730:intron |
TTTCCATCATGAACTAGCAC+TGG | 0.520703 | 1_1:+66848398 | None:intergenic |
GGTTATATTGAAGAAGTTGA+GGG | 0.524798 | 1_1:+66848438 | None:intergenic |
ATGATCATGGACTCACATAT+GGG | 0.533497 | 1_1:+66848374 | None:intergenic |
AGAATATCTTGCAGAGTGAA+AGG | 0.542132 | 1_1:-66847303 | Msa0037730:CDS |
GGGTTATATTGAAGAAGTTG+AGG | 0.544588 | 1_1:+66848437 | None:intergenic |
GCTCTTCACAACTTATGCTA+TGG | 0.547521 | 1_1:+66847488 | None:intergenic |
ATGGCAGAGGTGAAACTACA+TGG | 0.553227 | 1_1:-66848557 | Msa0037730:CDS |
CCACCAACTTCTCTTGGTCA+GGG | 0.554529 | 1_1:+66847218 | None:intergenic |
GTATGGACCCTAAATTTGAA+AGG | 0.560566 | 1_1:-66848503 | Msa0037730:CDS |
GACTCAAAGTTGTTGAGGAT+CGG | 0.561201 | 1_1:-66847435 | Msa0037730:CDS |
ACTCCAGTGCTAGTTCATGA+TGG | 0.573621 | 1_1:-66848401 | Msa0037730:CDS |
GATCAGAAGAAATTCTATGC+GGG | 0.579648 | 1_1:-66847403 | Msa0037730:CDS |
TTAAACCATAAATGCAATCG+GGG | 0.593715 | 1_1:+66847277 | None:intergenic |
GGCGCGACTCAAAGTTGTTG+AGG | 0.594370 | 1_1:-66847440 | Msa0037730:CDS |
AAGTTGTGAAGAGCGAGAGA+AGG | 0.595648 | 1_1:-66847479 | Msa0037730:CDS |
CTTCACAACTTATGCTATGG+CGG | 0.605752 | 1_1:+66847491 | None:intergenic |
CCCTGACCAAGAGAAGTTGG+TGG | 0.608979 | 1_1:-66847218 | Msa0037730:CDS |
CAAGCTTAGGAGAATGGCAG+AGG | 0.610526 | 1_1:-66848570 | None:intergenic |
CACCAACTTCTCTTGGTCAG+GGG | 0.619146 | 1_1:+66847219 | None:intergenic |
GCAATCAAGACATCTTCTTG+AGG | 0.623017 | 1_1:-66847163 | None:intergenic |
TATACCATATGAGAACATAG+AGG | 0.675165 | 1_1:-66848480 | Msa0037730:CDS |
TAAACCATAAATGCAATCGG+GGG | 0.688859 | 1_1:+66847278 | None:intergenic |
TGATCAGAAGAAATTCTATG+CGG | 0.720599 | 1_1:-66847404 | Msa0037730:CDS |
GCAGGAAGCAATGAGTTGTG+TGG | 0.742760 | 1_1:+66848326 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAAAATAAAATACATCAT+TGG | + | chr1_1:66847499-66847518 | None:intergenic | 10.0% |
!! | ATATAATTTATCTTGATAAA+TGG | - | chr1_1:66847917-66847936 | Msa0037730:intron | 10.0% |
!! | ATAGATTATAGTTATAAAAT+AGG | + | chr1_1:66848078-66848097 | None:intergenic | 10.0% |
!! | AATAAAATAAAATACATCAT+TGG | + | chr1_1:66847499-66847518 | None:intergenic | 10.0% |
!! | ATATAATTTATCTTGATAAA+TGG | - | chr1_1:66847917-66847936 | Msa0037730:intron | 10.0% |
!! | ATAGATTATAGTTATAAAAT+AGG | + | chr1_1:66848078-66848097 | None:intergenic | 10.0% |
!!! | TTCTTTTGAAAAAACTAATT+GGG | + | chr1_1:66847598-66847617 | None:intergenic | 15.0% |
!!! | TTTCTTTTGAAAAAACTAAT+TGG | + | chr1_1:66847599-66847618 | None:intergenic | 15.0% |
!! | TTTAAAAACGTCAATAATAT+TGG | + | chr1_1:66847989-66848008 | None:intergenic | 15.0% |
!! | TTTATGGTTTAATAATTTCA+AGG | - | chr1_1:66848456-66848475 | Msa0037730:CDS | 15.0% |
!!! | TTCTTTTGAAAAAACTAATT+GGG | + | chr1_1:66847598-66847617 | None:intergenic | 15.0% |
!!! | TTTCTTTTGAAAAAACTAAT+TGG | + | chr1_1:66847599-66847618 | None:intergenic | 15.0% |
!! | TTTAAAAACGTCAATAATAT+TGG | + | chr1_1:66847989-66848008 | None:intergenic | 15.0% |
!! | TTTATGGTTTAATAATTTCA+AGG | - | chr1_1:66848456-66848475 | Msa0037730:CDS | 15.0% |
!! | AATATATTTAACCCAAAATC+GGG | + | chr1_1:66847445-66847464 | None:intergenic | 20.0% |
!! | CAATATATTTAACCCAAAAT+CGG | + | chr1_1:66847446-66847465 | None:intergenic | 20.0% |
!!! | TTTTGGGTTAAATATATTGA+TGG | - | chr1_1:66847447-66847466 | Msa0037730:CDS | 20.0% |
!! | AAAATATGACAAAGTTAGTT+TGG | - | chr1_1:66847962-66847981 | Msa0037730:intron | 20.0% |
!! | TTTGAAAACAATGAATTATG+AGG | - | chr1_1:66848048-66848067 | Msa0037730:intron | 20.0% |
!! | TTGAAAACAATGAATTATGA+GGG | - | chr1_1:66848049-66848068 | Msa0037730:intron | 20.0% |
!! | TATTAAACCATAAATGCAAT+CGG | + | chr1_1:66848450-66848469 | None:intergenic | 20.0% |
!! | TCTTCTAATTGAAAAAATCA+AGG | - | chr1_1:66848537-66848556 | Msa0037730:CDS | 20.0% |
!! | AATATATTTAACCCAAAATC+GGG | + | chr1_1:66847445-66847464 | None:intergenic | 20.0% |
!! | CAATATATTTAACCCAAAAT+CGG | + | chr1_1:66847446-66847465 | None:intergenic | 20.0% |
!!! | TTTTGGGTTAAATATATTGA+TGG | - | chr1_1:66847447-66847466 | Msa0037730:CDS | 20.0% |
!! | AAAATATGACAAAGTTAGTT+TGG | - | chr1_1:66847962-66847981 | Msa0037730:intron | 20.0% |
!! | TTTGAAAACAATGAATTATG+AGG | - | chr1_1:66848048-66848067 | Msa0037730:intron | 20.0% |
!! | TTGAAAACAATGAATTATGA+GGG | - | chr1_1:66848049-66848068 | Msa0037730:intron | 20.0% |
!! | TATTAAACCATAAATGCAAT+CGG | + | chr1_1:66848450-66848469 | None:intergenic | 20.0% |
!! | TCTTCTAATTGAAAAAATCA+AGG | - | chr1_1:66848537-66848556 | Msa0037730:CDS | 20.0% |
! | TGGTATACCTTTCAAATTTA+GGG | + | chr1_1:66847229-66847248 | None:intergenic | 25.0% |
! | ATGGTATACCTTTCAAATTT+AGG | + | chr1_1:66847230-66847249 | None:intergenic | 25.0% |
! | AATGTATTCAACAATGATCA+TGG | + | chr1_1:66847364-66847383 | None:intergenic | 25.0% |
! | TTGAATACATTGATGAGATA+TGG | - | chr1_1:66847373-66847392 | Msa0037730:CDS | 25.0% |
!! | GTTAGTTTGAATCATATCAA+TGG | + | chr1_1:66848165-66848184 | None:intergenic | 25.0% |
! | TTCAAACTAACAACACTATT+CGG | - | chr1_1:66848174-66848193 | Msa0037730:intron | 25.0% |
! | ATTAAACCATAAATGCAATC+GGG | + | chr1_1:66848449-66848468 | None:intergenic | 25.0% |
! | TGGTATACCTTTCAAATTTA+GGG | + | chr1_1:66847229-66847248 | None:intergenic | 25.0% |
! | ATGGTATACCTTTCAAATTT+AGG | + | chr1_1:66847230-66847249 | None:intergenic | 25.0% |
! | AATGTATTCAACAATGATCA+TGG | + | chr1_1:66847364-66847383 | None:intergenic | 25.0% |
! | TTGAATACATTGATGAGATA+TGG | - | chr1_1:66847373-66847392 | Msa0037730:CDS | 25.0% |
!! | GTTAGTTTGAATCATATCAA+TGG | + | chr1_1:66848165-66848184 | None:intergenic | 25.0% |
! | TTCAAACTAACAACACTATT+CGG | - | chr1_1:66848174-66848193 | Msa0037730:intron | 25.0% |
! | ATTAAACCATAAATGCAATC+GGG | + | chr1_1:66848449-66848468 | None:intergenic | 25.0% |
! | GTACAGTCCTTTTACTTTAA+GGG | - | chr1_1:66847194-66847213 | Msa0037730:CDS | 30.0% |
CATACAACCCTTAAAGTAAA+AGG | + | chr1_1:66847204-66847223 | None:intergenic | 30.0% | |
!! | CTTTTACTTTAAGGGTTGTA+TGG | - | chr1_1:66847202-66847221 | Msa0037730:CDS | 30.0% |
TATACCATATGAGAACATAG+AGG | - | chr1_1:66847242-66847261 | Msa0037730:CDS | 30.0% | |
GGTTATATTGAAGAAGTTGA+GGG | + | chr1_1:66847287-66847306 | None:intergenic | 30.0% | |
! | GGTTAAATATATTGATGGCA+TGG | - | chr1_1:66847452-66847471 | Msa0037730:CDS | 30.0% |
! | TTCCATCGTGATCATTTTAT+AGG | - | chr1_1:66847542-66847561 | Msa0037730:intron | 30.0% |
TTATAGGCAAAAACTACACT+AGG | - | chr1_1:66847558-66847577 | Msa0037730:intron | 30.0% | |
!! | ATCTCCATTTCTAGTTGAAA+TGG | - | chr1_1:66847766-66847785 | Msa0037730:intron | 30.0% |
! | TAAAATCGTTTGTAGTCTTG+GGG | + | chr1_1:66847805-66847824 | None:intergenic | 30.0% |
CTAAAATCGTTTGTAGTCTT+GGG | + | chr1_1:66847806-66847825 | None:intergenic | 30.0% | |
! | TCTAAAATCGTTTGTAGTCT+TGG | + | chr1_1:66847807-66847826 | None:intergenic | 30.0% |
AGTTGTGTTTATAAGACACA+AGG | + | chr1_1:66848116-66848135 | None:intergenic | 30.0% | |
GGATCAATACTTCAAGATTT+CGG | - | chr1_1:66848195-66848214 | Msa0037730:intron | 30.0% | |
AGAAGGCTAAAGAGAATTTA+TGG | - | chr1_1:66848260-66848279 | Msa0037730:intron | 30.0% | |
GAAGGCTAAAGAGAATTTAT+GGG | - | chr1_1:66848261-66848280 | Msa0037730:intron | 30.0% | |
TGATCAGAAGAAATTCTATG+CGG | - | chr1_1:66848318-66848337 | Msa0037730:CDS | 30.0% | |
TTAAACCATAAATGCAATCG+GGG | + | chr1_1:66848448-66848467 | None:intergenic | 30.0% | |
! | GTACAGTCCTTTTACTTTAA+GGG | - | chr1_1:66847194-66847213 | Msa0037730:CDS | 30.0% |
CATACAACCCTTAAAGTAAA+AGG | + | chr1_1:66847204-66847223 | None:intergenic | 30.0% | |
!! | CTTTTACTTTAAGGGTTGTA+TGG | - | chr1_1:66847202-66847221 | Msa0037730:CDS | 30.0% |
TATACCATATGAGAACATAG+AGG | - | chr1_1:66847242-66847261 | Msa0037730:CDS | 30.0% | |
GGTTATATTGAAGAAGTTGA+GGG | + | chr1_1:66847287-66847306 | None:intergenic | 30.0% | |
! | GGTTAAATATATTGATGGCA+TGG | - | chr1_1:66847452-66847471 | Msa0037730:CDS | 30.0% |
! | TTCCATCGTGATCATTTTAT+AGG | - | chr1_1:66847542-66847561 | Msa0037730:intron | 30.0% |
TTATAGGCAAAAACTACACT+AGG | - | chr1_1:66847558-66847577 | Msa0037730:intron | 30.0% | |
!! | ATCTCCATTTCTAGTTGAAA+TGG | - | chr1_1:66847766-66847785 | Msa0037730:intron | 30.0% |
! | TAAAATCGTTTGTAGTCTTG+GGG | + | chr1_1:66847805-66847824 | None:intergenic | 30.0% |
CTAAAATCGTTTGTAGTCTT+GGG | + | chr1_1:66847806-66847825 | None:intergenic | 30.0% | |
! | TCTAAAATCGTTTGTAGTCT+TGG | + | chr1_1:66847807-66847826 | None:intergenic | 30.0% |
AGTTGTGTTTATAAGACACA+AGG | + | chr1_1:66848116-66848135 | None:intergenic | 30.0% | |
GGATCAATACTTCAAGATTT+CGG | - | chr1_1:66848195-66848214 | Msa0037730:intron | 30.0% | |
AGAAGGCTAAAGAGAATTTA+TGG | - | chr1_1:66848260-66848279 | Msa0037730:intron | 30.0% | |
GAAGGCTAAAGAGAATTTAT+GGG | - | chr1_1:66848261-66848280 | Msa0037730:intron | 30.0% | |
TGATCAGAAGAAATTCTATG+CGG | - | chr1_1:66848318-66848337 | Msa0037730:CDS | 30.0% | |
TTAAACCATAAATGCAATCG+GGG | + | chr1_1:66848448-66848467 | None:intergenic | 30.0% | |
! | AGGTGAAACTACATGGATTT+TGG | - | chr1_1:66847172-66847191 | Msa0037730:CDS | 35.0% |
! | GGTACAGTCCTTTTACTTTA+AGG | - | chr1_1:66847193-66847212 | Msa0037730:CDS | 35.0% |
GTATGGACCCTAAATTTGAA+AGG | - | chr1_1:66847219-66847238 | Msa0037730:CDS | 35.0% | |
TCTTCCTCTATGTTCTCATA+TGG | + | chr1_1:66847249-66847268 | None:intergenic | 35.0% | |
GGGTTATATTGAAGAAGTTG+AGG | + | chr1_1:66847288-66847307 | None:intergenic | 35.0% | |
ATGATCATGGACTCACATAT+GGG | + | chr1_1:66847351-66847370 | None:intergenic | 35.0% | |
AATGATCATGGACTCACATA+TGG | + | chr1_1:66847352-66847371 | None:intergenic | 35.0% | |
TGCCTATAAAATGATCACGA+TGG | + | chr1_1:66847547-66847566 | None:intergenic | 35.0% | |
TCGTTAGAGCATATAAGGTA+AGG | + | chr1_1:66848140-66848159 | None:intergenic | 35.0% | |
TGGTATCGTTAGAGCATATA+AGG | + | chr1_1:66848145-66848164 | None:intergenic | 35.0% | |
GATCAGAAGAAATTCTATGC+GGG | - | chr1_1:66848319-66848338 | Msa0037730:CDS | 35.0% | |
AGCATTGTAGACATAACTCT+TGG | - | chr1_1:66848352-66848371 | Msa0037730:CDS | 35.0% | |
AGAATATCTTGCAGAGTGAA+AGG | - | chr1_1:66848419-66848438 | Msa0037730:CDS | 35.0% | |
TAAACCATAAATGCAATCGG+GGG | + | chr1_1:66848447-66848466 | None:intergenic | 35.0% | |
! | AGGTGAAACTACATGGATTT+TGG | - | chr1_1:66847172-66847191 | Msa0037730:CDS | 35.0% |
! | GGTACAGTCCTTTTACTTTA+AGG | - | chr1_1:66847193-66847212 | Msa0037730:CDS | 35.0% |
GTATGGACCCTAAATTTGAA+AGG | - | chr1_1:66847219-66847238 | Msa0037730:CDS | 35.0% | |
TCTTCCTCTATGTTCTCATA+TGG | + | chr1_1:66847249-66847268 | None:intergenic | 35.0% | |
GGGTTATATTGAAGAAGTTG+AGG | + | chr1_1:66847288-66847307 | None:intergenic | 35.0% | |
ATGATCATGGACTCACATAT+GGG | + | chr1_1:66847351-66847370 | None:intergenic | 35.0% | |
AATGATCATGGACTCACATA+TGG | + | chr1_1:66847352-66847371 | None:intergenic | 35.0% | |
TGCCTATAAAATGATCACGA+TGG | + | chr1_1:66847547-66847566 | None:intergenic | 35.0% | |
TCGTTAGAGCATATAAGGTA+AGG | + | chr1_1:66848140-66848159 | None:intergenic | 35.0% | |
TGGTATCGTTAGAGCATATA+AGG | + | chr1_1:66848145-66848164 | None:intergenic | 35.0% | |
GATCAGAAGAAATTCTATGC+GGG | - | chr1_1:66848319-66848338 | Msa0037730:CDS | 35.0% | |
AGCATTGTAGACATAACTCT+TGG | - | chr1_1:66848352-66848371 | Msa0037730:CDS | 35.0% | |
AGAATATCTTGCAGAGTGAA+AGG | - | chr1_1:66848419-66848438 | Msa0037730:CDS | 35.0% | |
TAAACCATAAATGCAATCGG+GGG | + | chr1_1:66848447-66848466 | None:intergenic | 35.0% | |
!! | CTGGAGTATTTTTGCGTACT+GGG | + | chr1_1:66847308-66847327 | None:intergenic | 40.0% |
!! | ACTGGAGTATTTTTGCGTAC+TGG | + | chr1_1:66847309-66847328 | None:intergenic | 40.0% |
TTTCCATCATGAACTAGCAC+TGG | + | chr1_1:66847327-66847346 | None:intergenic | 40.0% | |
! | ATAAAGCTCAAGCCCGATTT+TGG | - | chr1_1:66847430-66847449 | Msa0037730:CDS | 40.0% |
! | TAAAGCTCAAGCCCGATTTT+GGG | - | chr1_1:66847431-66847450 | Msa0037730:CDS | 40.0% |
CTCGCCATTTCAACTAGAAA+TGG | + | chr1_1:66847773-66847792 | None:intergenic | 40.0% | |
!! | CATTTCTAGTTGAAATGGCG+AGG | - | chr1_1:66847771-66847790 | Msa0037730:intron | 40.0% |
CTTCACAACTTATGCTATGG+CGG | + | chr1_1:66848234-66848253 | None:intergenic | 40.0% | |
GCTCTTCACAACTTATGCTA+TGG | + | chr1_1:66848237-66848256 | None:intergenic | 40.0% | |
GACTCAAAGTTGTTGAGGAT+CGG | - | chr1_1:66848287-66848306 | Msa0037730:CDS | 40.0% | |
!! | CTGGAGTATTTTTGCGTACT+GGG | + | chr1_1:66847308-66847327 | None:intergenic | 40.0% |
!! | ACTGGAGTATTTTTGCGTAC+TGG | + | chr1_1:66847309-66847328 | None:intergenic | 40.0% |
TTTCCATCATGAACTAGCAC+TGG | + | chr1_1:66847327-66847346 | None:intergenic | 40.0% | |
! | ATAAAGCTCAAGCCCGATTT+TGG | - | chr1_1:66847430-66847449 | Msa0037730:CDS | 40.0% |
! | TAAAGCTCAAGCCCGATTTT+GGG | - | chr1_1:66847431-66847450 | Msa0037730:CDS | 40.0% |
CTCGCCATTTCAACTAGAAA+TGG | + | chr1_1:66847773-66847792 | None:intergenic | 40.0% | |
!! | CATTTCTAGTTGAAATGGCG+AGG | - | chr1_1:66847771-66847790 | Msa0037730:intron | 40.0% |
CTTCACAACTTATGCTATGG+CGG | + | chr1_1:66848234-66848253 | None:intergenic | 40.0% | |
GCTCTTCACAACTTATGCTA+TGG | + | chr1_1:66848237-66848256 | None:intergenic | 40.0% | |
GACTCAAAGTTGTTGAGGAT+CGG | - | chr1_1:66848287-66848306 | Msa0037730:CDS | 40.0% | |
ATGGCAGAGGTGAAACTACA+TGG | - | chr1_1:66847165-66847184 | Msa0037730:CDS | 45.0% | |
ACTCCAGTGCTAGTTCATGA+TGG | - | chr1_1:66847321-66847340 | Msa0037730:CDS | 45.0% | |
GCTTTATCATAGGGATGAGC+AGG | + | chr1_1:66847417-66847436 | None:intergenic | 45.0% | |
! | CGGGCTTGAGCTTTATCATA+GGG | + | chr1_1:66847426-66847445 | None:intergenic | 45.0% |
! | TCGGGCTTGAGCTTTATCAT+AGG | + | chr1_1:66847427-66847446 | None:intergenic | 45.0% |
CTTCAAGATTTCGGCGATTG+AGG | - | chr1_1:66848204-66848223 | Msa0037730:intron | 45.0% | |
AAGTTGTGAAGAGCGAGAGA+AGG | - | chr1_1:66848243-66848262 | Msa0037730:intron | 45.0% | |
! | AGTTGTTGAGGATCGGTGTT+TGG | - | chr1_1:66848294-66848313 | Msa0037730:CDS | 45.0% |
!! | GGGGTGTTTTCTTTGATGAC+TGG | + | chr1_1:66848487-66848506 | None:intergenic | 45.0% |
GAAAAGCCACCAACTTCTCT+TGG | + | chr1_1:66848513-66848532 | None:intergenic | 45.0% | |
ATGGCAGAGGTGAAACTACA+TGG | - | chr1_1:66847165-66847184 | Msa0037730:CDS | 45.0% | |
ACTCCAGTGCTAGTTCATGA+TGG | - | chr1_1:66847321-66847340 | Msa0037730:CDS | 45.0% | |
GCTTTATCATAGGGATGAGC+AGG | + | chr1_1:66847417-66847436 | None:intergenic | 45.0% | |
! | CGGGCTTGAGCTTTATCATA+GGG | + | chr1_1:66847426-66847445 | None:intergenic | 45.0% |
! | TCGGGCTTGAGCTTTATCAT+AGG | + | chr1_1:66847427-66847446 | None:intergenic | 45.0% |
CTTCAAGATTTCGGCGATTG+AGG | - | chr1_1:66848204-66848223 | Msa0037730:intron | 45.0% | |
AAGTTGTGAAGAGCGAGAGA+AGG | - | chr1_1:66848243-66848262 | Msa0037730:intron | 45.0% | |
! | AGTTGTTGAGGATCGGTGTT+TGG | - | chr1_1:66848294-66848313 | Msa0037730:CDS | 45.0% |
!! | GGGGTGTTTTCTTTGATGAC+TGG | + | chr1_1:66848487-66848506 | None:intergenic | 45.0% |
GAAAAGCCACCAACTTCTCT+TGG | + | chr1_1:66848513-66848532 | None:intergenic | 45.0% | |
GCAGGAAGCAATGAGTTGTG+TGG | + | chr1_1:66847399-66847418 | None:intergenic | 50.0% | |
GGTTCCCCCGATTGCATTTA+TGG | - | chr1_1:66848440-66848459 | Msa0037730:CDS | 50.0% | |
CACCAACTTCTCTTGGTCAG+GGG | + | chr1_1:66848506-66848525 | None:intergenic | 50.0% | |
CCACCAACTTCTCTTGGTCA+GGG | + | chr1_1:66848507-66848526 | None:intergenic | 50.0% | |
GCAGGAAGCAATGAGTTGTG+TGG | + | chr1_1:66847399-66847418 | None:intergenic | 50.0% | |
GGTTCCCCCGATTGCATTTA+TGG | - | chr1_1:66848440-66848459 | Msa0037730:CDS | 50.0% | |
CACCAACTTCTCTTGGTCAG+GGG | + | chr1_1:66848506-66848525 | None:intergenic | 50.0% | |
CCACCAACTTCTCTTGGTCA+GGG | + | chr1_1:66848507-66848526 | None:intergenic | 50.0% | |
GGCGCGACTCAAAGTTGTTG+AGG | - | chr1_1:66848282-66848301 | Msa0037730:CDS | 55.0% | |
CACCCCTGACCAAGAGAAGT+TGG | - | chr1_1:66848501-66848520 | Msa0037730:CDS | 55.0% | |
CCCTGACCAAGAGAAGTTGG+TGG | - | chr1_1:66848504-66848523 | Msa0037730:CDS | 55.0% | |
GCCACCAACTTCTCTTGGTC+AGG | + | chr1_1:66848508-66848527 | None:intergenic | 55.0% | |
GGCGCGACTCAAAGTTGTTG+AGG | - | chr1_1:66848282-66848301 | Msa0037730:CDS | 55.0% | |
CACCCCTGACCAAGAGAAGT+TGG | - | chr1_1:66848501-66848520 | Msa0037730:CDS | 55.0% | |
CCCTGACCAAGAGAAGTTGG+TGG | - | chr1_1:66848504-66848523 | Msa0037730:CDS | 55.0% | |
GCCACCAACTTCTCTTGGTC+AGG | + | chr1_1:66848508-66848527 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_1 | gene | 66847165 | 66848579 | 66847165 | ID=Msa0037730;Name=Msa0037730 |
chr1_1 | mRNA | 66847165 | 66848579 | 66847165 | ID=Msa0037730-mRNA-1;Parent=Msa0037730;Name=Msa0037730-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0|0|1|1|1|2|0|225 |
chr1_1 | exon | 66848271 | 66848579 | 66848271 | ID=Msa0037730-mRNA-1:exon:21650;Parent=Msa0037730-mRNA-1 |
chr1_1 | exon | 66847165 | 66847533 | 66847165 | ID=Msa0037730-mRNA-1:exon:21649;Parent=Msa0037730-mRNA-1 |
chr1_1 | CDS | 66848271 | 66848579 | 66848271 | ID=Msa0037730-mRNA-1:cds;Parent=Msa0037730-mRNA-1 |
chr1_1 | CDS | 66847165 | 66847533 | 66847165 | ID=Msa0037730-mRNA-1:cds;Parent=Msa0037730-mRNA-1 |
Gene Sequence |
Protein sequence |