AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0085000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 154 sgRNAs with CRISPR-Local

Find 550 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTTGTTTGTCTTATTAT+AGG 0.157160 1_2:+64828332 Msa0085000:three_prime_UTR
TAGCCACGATGGAACGTTTC+TGG 0.171901 1_2:+64829481 Msa0085000:three_prime_UTR
ATTCAAAATTAATATTAAAA+AGG 0.227965 1_2:-64835198 None:intergenic
CTGTTTATTTCCTTCTATAA+GGG 0.277716 1_2:+64828258 Msa0085000:three_prime_UTR
GACTTCCTTATGTCGTTTAA+TGG 0.278873 1_2:+64829752 Msa0085000:three_prime_UTR
TTTCTCTGGAGGATCCTTAA+TGG 0.279006 1_2:+64829123 Msa0085000:three_prime_UTR
ATGATGGAGCTGTGAGATTA+TGG 0.280439 1_2:+64834789 Msa0085000:three_prime_UTR
ACTTCAACTATTGCTCTTAC+TGG 0.290120 1_2:+64832837 Msa0085000:three_prime_UTR
ACAGATTCTGTATCGAGTTT+AGG 0.294590 1_2:+64829455 Msa0085000:three_prime_UTR
ACGATGCAACCTTGAGAATA+TGG 0.299157 1_2:+64829930 Msa0085000:three_prime_UTR
TTGATGGAACTGTTAAAATC+TGG 0.307851 1_2:+64829516 Msa0085000:three_prime_UTR
ACTGTTTATTTCCTTCTATA+AGG 0.311282 1_2:+64828257 Msa0085000:three_prime_UTR
TTGTTTGATTGCATATGATA+TGG 0.321150 1_2:+64834969 Msa0085000:three_prime_UTR
TCATCATCACTATGATGATT+TGG 0.328094 1_2:-64828407 None:intergenic
AACTGTATGACAGTGGTTCC+TGG 0.340668 1_2:+64834269 Msa0085000:intron
GAATGGGCTTCCCAGCTTAA+TGG 0.341217 1_2:+64829147 Msa0085000:three_prime_UTR
GGGAAGCCCATTCTCCATTA+AGG 0.345840 1_2:-64829137 None:intergenic
GGAGAGCCGCCAGGAGGATC+AGG 0.348540 1_2:-64828557 None:intergenic
CAAGCATGTATATGTCCTTT+AGG 0.349274 1_2:+64835032 Msa0085000:three_prime_UTR
GATGGTGATGGTGGTGGTGA+TGG 0.350066 1_2:+64828690 Msa0085000:three_prime_UTR
ATTATCTTGCCCCTTATAGA+AGG 0.354025 1_2:-64828268 None:intergenic
AGAGGAAATGTCCTCATTGC+TGG 0.358059 1_2:+64829686 Msa0085000:three_prime_UTR
TCTGTGAATTAAGTGGAATT+TGG 0.367696 1_2:-64828161 None:intergenic
GGTGGTGGTGATGGTGGTGG+TGG 0.382501 1_2:+64828699 Msa0085000:three_prime_UTR
AATCTGAAAGGCACGTTAGA+TGG 0.390124 1_2:+64829551 Msa0085000:three_prime_UTR
GTTAAAATCTGGGATGCGTC+TGG 0.391279 1_2:+64829527 Msa0085000:three_prime_UTR
GCATGGATAAAATGACCATC+TGG 0.392161 1_2:+64834305 Msa0085000:three_prime_UTR
TGCCTCATCTGTTGGGCTGC+AGG 0.397890 1_2:-64829067 None:intergenic
TGTTCAATCCACTGAATGAA+TGG 0.399093 1_2:-64828013 None:intergenic
CCTCATGCTCACAAATGCTT+CGG 0.405559 1_2:-64834348 None:intergenic
GGAGGATCAGGGCCACCATC+TGG 0.408902 1_2:-64828545 None:intergenic
GATGGTGGTGGTGATGGTGG+TGG 0.409890 1_2:+64828696 Msa0085000:three_prime_UTR
GCCACAAGTGCCTCATCTGT+TGG 0.411659 1_2:-64829075 None:intergenic
GAAGGAAATAAACAGTAAAC+TGG 0.413205 1_2:-64828250 None:intergenic
AACAATATATACCATTAAGC+TGG 0.414279 1_2:-64829158 None:intergenic
CTCATGCTCACAAATGCTTC+GGG 0.414517 1_2:-64834347 None:intergenic
AGTGGTTCCTGGGCTGCAAT+TGG 0.415085 1_2:+64834280 Msa0085000:intron
GCTCTTACTGGTTCTGTGGA+TGG 0.419290 1_2:+64832849 Msa0085000:three_prime_UTR
GATGAGGCACTTGTGGCAAC+AGG 0.424253 1_2:+64829081 Msa0085000:three_prime_UTR
GGTGATGGTGGTGGTGATGG+TGG 0.426374 1_2:+64828693 Msa0085000:three_prime_UTR
CCACAAGTGCCTCATCTGTT+GGG 0.429128 1_2:-64829074 None:intergenic
TGTTTGATTGCATATGATAT+GGG 0.430437 1_2:+64834970 Msa0085000:three_prime_UTR
TGGTTCAGCTTTGTAGAAGT+TGG 0.432550 1_2:-64828230 None:intergenic
CCTGGCGGCTCTCCCGATCC+AGG 0.435267 1_2:+64828566 Msa0085000:three_prime_UTR
CTCACAAATGCTTCGGGCTA+AGG 0.436027 1_2:-64834341 None:intergenic
GGTTCCTGGGCTGCAATTGG+AGG 0.441360 1_2:+64834283 Msa0085000:three_prime_UTR
GAATGTGTCAGAACATTTAG+AGG 0.443558 1_2:+64834827 Msa0085000:three_prime_UTR
GATGGTGATGGTGATGGTGG+TGG 0.443920 1_2:+64828684 Msa0085000:three_prime_UTR
GGAGGATCCTTAATGGAGAA+TGG 0.450325 1_2:+64829130 Msa0085000:three_prime_UTR
GATGGTGATGGTGATGGTGA+TGG 0.452355 1_2:+64828678 Msa0085000:three_prime_UTR
GGATTGTCGTCAGGTGCATC+AGG 0.456455 1_2:-64828524 None:intergenic
GGCACATCGTATGTGGCTAC+TGG 0.459735 1_2:+64834761 Msa0085000:three_prime_UTR
CTATGTAGGCCACCTGGATC+GGG 0.461969 1_2:-64828578 None:intergenic
TGCTAAACATGTTAATCCCT+CGG 0.466251 1_2:-64832805 None:intergenic
CCGCCGTCGTCTCCATTCTC+AGG 0.468798 1_2:+64828041 Msa0085000:CDS
TTGTATTGCTTAAAGTATCA+AGG 0.475310 1_2:-64828376 None:intergenic
GATGGTGGCCCTGATCCTCC+TGG 0.475492 1_2:+64828548 Msa0085000:three_prime_UTR
TCAAGTTCCATTGAGTGTGT+TGG 0.479203 1_2:+64833693 Msa0085000:three_prime_UTR
TGATGGAGCTGTGAGATTAT+GGG 0.479339 1_2:+64834790 Msa0085000:three_prime_UTR
CCACCATCTGGATTGTCGTC+AGG 0.479833 1_2:-64828533 None:intergenic
TGCGAATCCAACACACTCAA+TGG 0.480617 1_2:-64833700 None:intergenic
GGTGATGGTGATGGTGATGG+TGG 0.481615 1_2:+64828681 Msa0085000:three_prime_UTR
GAGGATCCTTAATGGAGAAT+GGG 0.481827 1_2:+64829131 Msa0085000:three_prime_UTR
CATCGTCAGAGGGAACTTCA+TGG 0.482786 1_2:-64828493 None:intergenic
TGATGGAACTGTTAAAATCT+GGG 0.483493 1_2:+64829517 Msa0085000:three_prime_UTR
CGTGACCATTAAACGACATA+AGG 0.485564 1_2:-64829757 None:intergenic
CACATACGATGTGCCAAGCC+AGG 0.485853 1_2:-64834753 None:intergenic
CATGCCTCCAATTGCAGCCC+AGG 0.491862 1_2:-64834287 None:intergenic
CCTGGATCGGGAGAGCCGCC+AGG 0.491870 1_2:-64828566 None:intergenic
GATGGAACGTTTCTGGCATC+AGG 0.495719 1_2:+64829488 Msa0085000:three_prime_UTR
AGGAAGAAGTTCATCGTCAG+AGG 0.495964 1_2:-64828504 None:intergenic
CGGAGGTTAATATTTGCCAT+TGG 0.497479 1_2:-64827963 None:intergenic
GATTCTGTGCATACATTCAC+TGG 0.498391 1_2:+64828778 Msa0085000:three_prime_UTR
ACTATGTAGGCCACCTGGAT+CGG 0.499980 1_2:-64828579 None:intergenic
AAGAGTGTCTGTGAATTAAG+TGG 0.502002 1_2:-64828168 None:intergenic
GAAGAGAACGCACCTGAGAA+TGG 0.503141 1_2:-64828053 None:intergenic
CTGAAAATCCATTCATTCAG+TGG 0.503142 1_2:+64828005 Msa0085000:CDS
CATAACATAAAACAACAATC+TGG 0.505603 1_2:-64835079 None:intergenic
TATTGCTCTTACTGGTTCTG+TGG 0.506596 1_2:+64832845 Msa0085000:three_prime_UTR
GTGATGACGTAGGATTTCTC+TGG 0.509352 1_2:+64829109 Msa0085000:three_prime_UTR
AGGAACGCCCGCTGTCCTAA+AGG 0.509497 1_2:-64835047 None:intergenic
CCCAACAGATGAGGCACTTG+TGG 0.512260 1_2:+64829074 Msa0085000:three_prime_UTR
AATCCTCCTCAGTGTGGATG+TGG 0.512568 1_2:+64829717 Msa0085000:three_prime_UTR
GTTAATCCCTCGGTATGGTA+TGG 0.513418 1_2:-64832795 None:intergenic
GTTAAATCTTACAGTGGCTC+AGG 0.519678 1_2:+64829654 Msa0085000:intron
GCAATGAGGACATTTCCTCT+TGG 0.527044 1_2:-64829683 None:intergenic
CATATTGTGAATATCACTAC+AGG 0.527149 1_2:+64832879 Msa0085000:three_prime_UTR
CTGGCTTGGCACATCGTATG+TGG 0.530171 1_2:+64834754 Msa0085000:three_prime_UTR
CTGGGCTGCAATTGGAGGCA+TGG 0.532320 1_2:+64834288 Msa0085000:three_prime_UTR
TGTTTATTTCCTTCTATAAG+GGG 0.535426 1_2:+64828259 Msa0085000:three_prime_UTR
AGATTATGGGACAGTCGATC+TGG 0.536579 1_2:+64834803 Msa0085000:three_prime_UTR
CAGCTTTGTAGAAGTTGGAA+AGG 0.541395 1_2:-64828225 None:intergenic
TTAAATATCGCAGATGGTGA+TGG 0.545678 1_2:+64828660 Msa0085000:intron
GCACTTGTGGCAACAGGAGC+TGG 0.547872 1_2:+64829087 Msa0085000:three_prime_UTR
ACAATATATACCATTAAGCT+GGG 0.549455 1_2:-64829157 None:intergenic
TGGAACTTGAATGAGAAGGC+AGG 0.549465 1_2:-64833680 None:intergenic
GAGAATGGAGACGACGGCGG+CGG 0.550322 1_2:-64828038 None:intergenic
GGCACGTTAGATGGTCCTGA+AGG 0.554207 1_2:+64829560 Msa0085000:three_prime_UTR
AGGAGAAGAATATGAAGCAG+TGG 0.555430 1_2:-64828205 None:intergenic
GTTTGATTGCATATGATATG+GGG 0.555606 1_2:+64834971 Msa0085000:three_prime_UTR
TATATGTCCTTTAGGACAGC+GGG 0.559132 1_2:+64835040 Msa0085000:three_prime_UTR
TTAGGGAGAACAATATGTAC+TGG 0.559850 1_2:+64829902 Msa0085000:intron
ACTGTATGACAGTGGTTCCT+GGG 0.563238 1_2:+64834270 Msa0085000:intron
GGAGAAGAATATGAAGCAGT+GGG 0.563614 1_2:-64828204 None:intergenic
GTGGCTACTGGATCTAATGA+TGG 0.564521 1_2:+64834773 Msa0085000:three_prime_UTR
CCGAAGCATTTGTGAGCATG+AGG 0.565837 1_2:+64834348 Msa0085000:three_prime_UTR
ATTTCTGCTCTAGAATGTCT+AGG 0.565900 1_2:-64835150 None:intergenic
CAACAATCTGGCTTCTGTAG+AGG 0.567925 1_2:-64835067 None:intergenic
GAGAGCCGCCAGGAGGATCA+GGG 0.578266 1_2:-64828556 None:intergenic
GCACGTTAGATGGTCCTGAA+GGG 0.585298 1_2:+64829561 Msa0085000:three_prime_UTR
TAATCACGAGTACCTTGTCT+CGG 0.589265 1_2:+64834886 Msa0085000:three_prime_UTR
CACGTTAGATGGTCCTGAAG+GGG 0.591663 1_2:+64829562 Msa0085000:three_prime_UTR
AACATGTTAATCCCTCGGTA+TGG 0.591723 1_2:-64832800 None:intergenic
CATACATTCACTGGTCATGA+TGG 0.599726 1_2:+64828787 Msa0085000:three_prime_UTR
GATGGTGATGGTGATGGTGA+TGG 0.603742 1_2:+64828672 Msa0085000:intron
CATGGATAAAATGACCATCT+GGG 0.612989 1_2:+64834306 Msa0085000:three_prime_UTR
AAATCTTACAGTGGCTCAGG+TGG 0.615875 1_2:+64829657 Msa0085000:intron
GGAACTTGAATGAGAAGGCA+GGG 0.618213 1_2:-64833679 None:intergenic
TGCCTGCAGCCCAACAGATG+AGG 0.618221 1_2:+64829065 Msa0085000:three_prime_UTR
ATCGGGAGTAAAATCACCAC+AGG 0.624969 1_2:-64829792 None:intergenic
GTGACATGTTCAACCTGGCT+TGG 0.626776 1_2:+64834740 Msa0085000:three_prime_UTR
GGTCATCCATACCATACCGA+GGG 0.627020 1_2:+64832789 Msa0085000:intron
GATCTAAAGAAGCCGAGACA+AGG 0.627111 1_2:-64834898 None:intergenic
AGTTTAGGATTTAGCCACGA+TGG 0.627308 1_2:+64829470 Msa0085000:three_prime_UTR
GATGCGTCTGGAAATCTGAA+AGG 0.634031 1_2:+64829539 Msa0085000:three_prime_UTR
ATCGCAGATGGTGATGGTGA+TGG 0.637108 1_2:+64828666 Msa0085000:intron
AGTGTGTTGGATTCGCACCA+AGG 0.639273 1_2:+64833706 Msa0085000:three_prime_UTR
GGAAGAAGTTCATCGTCAGA+GGG 0.639941 1_2:-64828503 None:intergenic
ATGTCGTTTAATGGTCACGC+TGG 0.641738 1_2:+64829761 Msa0085000:three_prime_UTR
ATGGAGTGACATGTTCAACC+TGG 0.644264 1_2:+64834735 Msa0085000:three_prime_UTR
GGAGTGCTCTACATCCCAGA+TGG 0.644840 1_2:-64834320 None:intergenic
ATGACGTAGGATTTCTCTGG+AGG 0.647613 1_2:+64829112 Msa0085000:three_prime_UTR
ACGTTAGATGGTCCTGAAGG+GGG 0.655427 1_2:+64829563 Msa0085000:three_prime_UTR
CCTGACGACAATCCAGATGG+TGG 0.660117 1_2:+64828533 Msa0085000:three_prime_UTR
GCACCTGAGAATGGAGACGA+CGG 0.662780 1_2:-64828044 None:intergenic
TTGATGAATCCTCCTCAGTG+TGG 0.662951 1_2:+64829711 Msa0085000:three_prime_UTR
ATTCATCAAAACCAGCAATG+AGG 0.666974 1_2:-64829697 None:intergenic
AATGTGTCAGAACATTTAGA+GGG 0.671297 1_2:+64834828 Msa0085000:three_prime_UTR
GAAAGCATTCATGTTGTGCG+AGG 0.671673 1_2:+64829968 Msa0085000:three_prime_UTR
ATTCCACATCCACACTGAGG+AGG 0.672492 1_2:-64829720 None:intergenic
CCTGAGAATGGAGACGACGG+CGG 0.675601 1_2:-64828041 None:intergenic
ACAGGAGCTGGTGATGACGT+AGG 0.681696 1_2:+64829099 Msa0085000:three_prime_UTR
GGATCGGGAGAGCCGCCAGG+AGG 0.683258 1_2:-64828563 None:intergenic
AGGTCATCCATACCATACCG+AGG 0.684577 1_2:+64832788 Msa0085000:intron
TCAATGGAACTTGAATGAGA+AGG 0.685059 1_2:-64833684 None:intergenic
GTATATGTCCTTTAGGACAG+CGG 0.693297 1_2:+64835039 Msa0085000:three_prime_UTR
GCACCTGACGACAATCCAGA+TGG 0.695484 1_2:+64828530 Msa0085000:three_prime_UTR
TGGCTCAGGTGGCATCCAAG+AGG 0.696728 1_2:+64829668 Msa0085000:three_prime_UTR
CACGCTGGTAGTGTGACCTG+TGG 0.697317 1_2:+64829776 Msa0085000:three_prime_UTR
GGTTGGCGTCTAAAATAACA+CGG 0.705161 1_2:-64827983 None:intergenic
ATGCCAGAAACGTTCCATCG+TGG 0.721913 1_2:-64829484 None:intergenic
GCTATTCCACATCCACACTG+AGG 0.751183 1_2:-64829723 None:intergenic
GGTGGCCCTGATCCTCCTGG+CGG 0.759172 1_2:+64828551 Msa0085000:three_prime_UTR
TGGCGTCTAAAATAACACGG+AGG 0.847487 1_2:-64827980 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAACTTAATATTGTAATTTT+GGG - chr1_2:64830061-64830080 None:intergenic 10.0%
!!! TAAACTTAATATTGTAATTT+TGG - chr1_2:64830062-64830081 None:intergenic 10.0%
!!! ATATATTGTTTTCTTATGAA+AGG + chr1_2:64829171-64829190 Msa0085000:intron 15.0%
!!! AAAGTTATGTAACAATTTTT+GGG + chr1_2:64832061-64832080 Msa0085000:intron 15.0%
!! ATAATTTCAAAAATAACTGT+AGG + chr1_2:64832656-64832675 Msa0085000:intron 15.0%
!! ATTCTTTGTATTTAATGTAT+CGG - chr1_2:64832717-64832736 None:intergenic 15.0%
!!! TATCCTATTGTATTTTAATT+TGG + chr1_2:64834661-64834680 Msa0085000:intron 15.0%
!! ATTCCAAATTAAAATACAAT+AGG - chr1_2:64834667-64834686 None:intergenic 15.0%
!!! TTCTTTGTTTGTCTTATTAT+AGG + chr1_2:64828332-64828351 Msa0085000:three_prime_UTR 20.0%
!!! ATTATTTTAAATATCGCAGA+TGG + chr1_2:64828654-64828673 Msa0085000:intron 20.0%
!!! GATATTTTTTAATGCTTTCT+TGG + chr1_2:64829014-64829033 Msa0085000:intron 20.0%
!! TATCTAGTATAATATAAGTG+TGG + chr1_2:64829349-64829368 Msa0085000:intron 20.0%
!! GACATAATATAATATTCTGA+TGG - chr1_2:64830643-64830662 None:intergenic 20.0%
!! TCATCATACTAAGAATTTAA+AGG + chr1_2:64830719-64830738 Msa0085000:intron 20.0%
!! CATCATACTAAGAATTTAAA+GGG + chr1_2:64830720-64830739 Msa0085000:intron 20.0%
!! ATCATACTAAGAATTTAAAG+GGG + chr1_2:64830721-64830740 Msa0085000:intron 20.0%
!! AAGAATTATACGGTTTATTA+AGG - chr1_2:64830789-64830808 None:intergenic 20.0%
!!! AGGTTTTCAAAAGAATTATA+CGG - chr1_2:64830799-64830818 None:intergenic 20.0%
!!! AATCAACCACTTTTTTTTTA+AGG - chr1_2:64831610-64831629 None:intergenic 20.0%
!!! TTATGTTAAACCTTTTGAAT+TGG + chr1_2:64831690-64831709 Msa0085000:intron 20.0%
!! AATTGGTATTCAATGATTTA+TGG + chr1_2:64831707-64831726 Msa0085000:intron 20.0%
!! AATAGATATGTCTTAAGAAA+CGG + chr1_2:64831996-64832015 Msa0085000:intron 20.0%
!! AAAAAAATTGATAAGCAAGA+AGG - chr1_2:64832029-64832048 None:intergenic 20.0%
!!! CAAAGTTATGTAACAATTTT+TGG + chr1_2:64832060-64832079 Msa0085000:intron 20.0%
!! CATATCGTATCATAAAAATA+AGG - chr1_2:64832267-64832286 None:intergenic 20.0%
!! ATCATATCATGTAAATAACA+GGG - chr1_2:64832691-64832710 None:intergenic 20.0%
!! TATCATATCATGTAAATAAC+AGG - chr1_2:64832692-64832711 None:intergenic 20.0%
!!! TTAGTTATGTTTCTAAGATT+TGG + chr1_2:64833026-64833045 Msa0085000:intron 20.0%
!! AATATGTTAGAAACTAATGT+GGG - chr1_2:64833131-64833150 None:intergenic 20.0%
!! AAATATGTTAGAAACTAATG+TGG - chr1_2:64833132-64833151 None:intergenic 20.0%
!!! ATCCCAATTTTAATCATATT+GGG - chr1_2:64833229-64833248 None:intergenic 20.0%
!!! TATCCCAATTTTAATCATAT+TGG - chr1_2:64833230-64833249 None:intergenic 20.0%
!! AAACTCGATTACATTATATA+TGG + chr1_2:64833259-64833278 Msa0085000:intron 20.0%
!!! AAATTGATTAGTCAAAAGTT+TGG + chr1_2:64833337-64833356 Msa0085000:intron 20.0%
!!! TGCAACTTTATTTATGTAAA+AGG + chr1_2:64833584-64833603 Msa0085000:intron 20.0%
!!! GCAACTTTATTTATGTAAAA+GGG + chr1_2:64833585-64833604 Msa0085000:intron 20.0%
!!! ACTATTCATATTTAAGGTTT+AGG - chr1_2:64834088-64834107 None:intergenic 20.0%
!! AAACCTTAAATATGAATAGT+TGG + chr1_2:64834088-64834107 Msa0085000:intron 20.0%
!!! CTCAAAAGTTTTTTGTTTTA+TGG + chr1_2:64835235-64835254 Msa0085000:three_prime_UTR 20.0%
! TAGCGAGAAAATTGATTAAA+AGG - chr1_2:64828108-64828127 None:intergenic 25.0%
! ACTGTTTATTTCCTTCTATA+AGG + chr1_2:64828257-64828276 Msa0085000:three_prime_UTR 25.0%
! CTGTTTATTTCCTTCTATAA+GGG + chr1_2:64828258-64828277 Msa0085000:three_prime_UTR 25.0%
! TGTTTATTTCCTTCTATAAG+GGG + chr1_2:64828259-64828278 Msa0085000:three_prime_UTR 25.0%
!! TTGTATTGCTTAAAGTATCA+AGG - chr1_2:64828379-64828398 None:intergenic 25.0%
! AATCATCAATGTTACTATGT+AGG - chr1_2:64828595-64828614 None:intergenic 25.0%
! ACATAAACAAATAGAGTAGA+AGG - chr1_2:64828817-64828836 None:intergenic 25.0%
! ACAATATATACCATTAAGCT+GGG - chr1_2:64829160-64829179 None:intergenic 25.0%
! AACAATATATACCATTAAGC+TGG - chr1_2:64829161-64829180 None:intergenic 25.0%
! TTATGAAAGGCAAATATTAG+TGG + chr1_2:64829184-64829203 Msa0085000:intron 25.0%
!!! ATATTAGTGGTTAGTTTGTT+AGG + chr1_2:64829197-64829216 Msa0085000:intron 25.0%
!!! TATTAGTGGTTAGTTTGTTA+GGG + chr1_2:64829198-64829217 Msa0085000:intron 25.0%
!! ACAAAAAAGTGCAAGAAATT+AGG + chr1_2:64830287-64830306 Msa0085000:intron 25.0%
! ATGTTATAACCGATAAAGAA+AGG + chr1_2:64830398-64830417 Msa0085000:intron 25.0%
! GATAAATCTCTGATTAGATA+AGG + chr1_2:64830587-64830606 Msa0085000:intron 25.0%
!!! CATTTTGTTTGTGTTTTCTT+GGG - chr1_2:64830665-64830684 None:intergenic 25.0%
!!! ACATTTTGTTTGTGTTTTCT+TGG - chr1_2:64830666-64830685 None:intergenic 25.0%
! AAGAAAACACAAACAAAATG+TGG + chr1_2:64830665-64830684 Msa0085000:intron 25.0%
! TTCTTAGTATGATGAGAATT+GGG - chr1_2:64830714-64830733 None:intergenic 25.0%
! ATTCTTAGTATGATGAGAAT+TGG - chr1_2:64830715-64830734 None:intergenic 25.0%
! TCATACTAAGAATTTAAAGG+GGG + chr1_2:64830722-64830741 Msa0085000:intron 25.0%
! TTTATGTAGATCTATTGTTG+GGG - chr1_2:64830912-64830931 None:intergenic 25.0%
! CTTTATGTAGATCTATTGTT+GGG - chr1_2:64830913-64830932 None:intergenic 25.0%
! ACTTTATGTAGATCTATTGT+TGG - chr1_2:64830914-64830933 None:intergenic 25.0%
! ATCTCAAGCTAAATACATTT+GGG - chr1_2:64831001-64831020 None:intergenic 25.0%
! TATCTCAAGCTAAATACATT+TGG - chr1_2:64831002-64831021 None:intergenic 25.0%
!!! TGTATTTAGCTTGAGATAAA+AGG + chr1_2:64831004-64831023 Msa0085000:intron 25.0%
! TGAAGTAAAACACTTAATGA+TGG - chr1_2:64831036-64831055 None:intergenic 25.0%
! AGGAAAAGTCTATGAATAAT+CGG + chr1_2:64831415-64831434 Msa0085000:intron 25.0%
!!! CCACTTTTTTTTTAAGGTAT+TGG - chr1_2:64831604-64831623 None:intergenic 25.0%
! CCAATACCTTAAAAAAAAAG+TGG + chr1_2:64831601-64831620 Msa0085000:intron 25.0%
! AACATAAACCTTAGTAGAAA+GGG - chr1_2:64831677-64831696 None:intergenic 25.0%
! TAACATAAACCTTAGTAGAA+AGG - chr1_2:64831678-64831697 None:intergenic 25.0%
! TCATTGAATACCAATTCAAA+AGG - chr1_2:64831703-64831722 None:intergenic 25.0%
!! TAACTTGTATCACACAAAAA+AGG + chr1_2:64831973-64831992 Msa0085000:intron 25.0%
! GTTCTTTGTATTTATCGTAA+AGG - chr1_2:64832290-64832309 None:intergenic 25.0%
!!! TTTTTGAAATTATTGCCTTG+AGG - chr1_2:64832649-64832668 None:intergenic 25.0%
!!! TCGTTAACCTTTACTTTTAT+AGG + chr1_2:64832768-64832787 Msa0085000:intron 25.0%
! CATAACTAAAGACATATGAA+AGG - chr1_2:64833015-64833034 None:intergenic 25.0%
! ATATGTTAGAAACTAATGTG+GGG - chr1_2:64833130-64833149 None:intergenic 25.0%
! TAATCATATTGGGGATAATT+GGG - chr1_2:64833219-64833238 None:intergenic 25.0%
! TTAATCATATTGGGGATAAT+TGG - chr1_2:64833220-64833239 None:intergenic 25.0%
! ATCCCCAATATGATTAAAAT+TGG + chr1_2:64833223-64833242 Msa0085000:intron 25.0%
! TCCCCAATATGATTAAAATT+GGG + chr1_2:64833224-64833243 Msa0085000:intron 25.0%
!!! TCCCAATTTTAATCATATTG+GGG - chr1_2:64833228-64833247 None:intergenic 25.0%
! GATTACATTATATATGGAGA+TGG + chr1_2:64833265-64833284 Msa0085000:intron 25.0%
!! AATGATGTTCTTTTGTAATG+TGG + chr1_2:64833460-64833479 Msa0085000:intron 25.0%
!!! TATAAATTTAGCTTTCTGCT+TGG + chr1_2:64833616-64833635 Msa0085000:intron 25.0%
! ATGCCAACTATTCATATTTA+AGG - chr1_2:64834094-64834113 None:intergenic 25.0%
! TTGGCATAAGTGAAAATTAT+GGG + chr1_2:64834107-64834126 Msa0085000:intron 25.0%
! GTCTTAATCTAATGATGATT+TGG + chr1_2:64834197-64834216 Msa0085000:intron 25.0%
!! CATATTTAATTAGGAGTACA+AGG - chr1_2:64834224-64834243 None:intergenic 25.0%
! TTAAGGAACAAAGTTATTGA+GGG - chr1_2:64834249-64834268 None:intergenic 25.0%
! TTTAAGGAACAAAGTTATTG+AGG - chr1_2:64834250-64834269 None:intergenic 25.0%
! TTGTTTGATTGCATATGATA+TGG + chr1_2:64834969-64834988 Msa0085000:three_prime_UTR 25.0%
! TGTTTGATTGCATATGATAT+GGG + chr1_2:64834970-64834989 Msa0085000:three_prime_UTR 25.0%
! CATAACATAAAACAACAATC+TGG - chr1_2:64835082-64835101 None:intergenic 25.0%
!!! TGTTGTTTTATGTTATGTTG+TGG + chr1_2:64835085-64835104 Msa0085000:three_prime_UTR 25.0%
!! AGAAATGTGATTGTCTTTTA+AGG + chr1_2:64835167-64835186 Msa0085000:three_prime_UTR 25.0%
TCTGTGAATTAAGTGGAATT+TGG - chr1_2:64828164-64828183 None:intergenic 30.0%
GAAGGAAATAAACAGTAAAC+TGG - chr1_2:64828253-64828272 None:intergenic 30.0%
TCATCATCACTATGATGATT+TGG - chr1_2:64828410-64828429 None:intergenic 30.0%
ACACAAATCATATATGTGCA+AGG + chr1_2:64828974-64828993 Msa0085000:intron 30.0%
AATACATAGCTATTGATGTG+TGG + chr1_2:64829318-64829337 Msa0085000:intron 30.0%
GTATAATATAAGTGTGGCAT+TGG + chr1_2:64829355-64829374 Msa0085000:intron 30.0%
TTGATGGAACTGTTAAAATC+TGG + chr1_2:64829516-64829535 Msa0085000:three_prime_UTR 30.0%
TGATGGAACTGTTAAAATCT+GGG + chr1_2:64829517-64829536 Msa0085000:three_prime_UTR 30.0%
! GAAACTATCAAAAGCACAAA+AGG - chr1_2:64829622-64829641 None:intergenic 30.0%
TGAAGATAGATTACTACCAT+CGG - chr1_2:64829813-64829832 None:intergenic 30.0%
GTAGTAATCTATCTTCATCT+TGG + chr1_2:64829816-64829835 Msa0085000:intron 30.0%
! TTCTTTTCACTTGATACCTT+AGG + chr1_2:64829884-64829903 Msa0085000:intron 30.0%
! TCTTTTCACTTGATACCTTA+GGG + chr1_2:64829885-64829904 Msa0085000:intron 30.0%
CAACTAACTCCTTTCTTTAT+CGG - chr1_2:64830410-64830429 None:intergenic 30.0%
! CTGCCTTATTACAAAAATGT+CGG + chr1_2:64830479-64830498 Msa0085000:intron 30.0%
! TGATTAGATAAGGCTTTAGT+TGG + chr1_2:64830597-64830616 Msa0085000:intron 30.0%
TCTGATATGTATCTTTGTGA+TGG + chr1_2:64830872-64830891 Msa0085000:intron 30.0%
ACTGTAAACTTTCCAAGTAT+GGG - chr1_2:64830957-64830976 None:intergenic 30.0%
AACTGTAAACTTTCCAAGTA+TGG - chr1_2:64830958-64830977 None:intergenic 30.0%
! AAGCTAAATACATTTGGGAT+CGG - chr1_2:64830996-64831015 None:intergenic 30.0%
! AGTGTTTTACTTCAATTCCT+AGG + chr1_2:64831042-64831061 Msa0085000:intron 30.0%
! AATGCTTTATTACTCGTAAC+CGG + chr1_2:64831268-64831287 Msa0085000:intron 30.0%
TAGTGCACTTAACAAGTATA+AGG - chr1_2:64831481-64831500 None:intergenic 30.0%
!! ATAATGGGTGTTTAAGGAAA+AGG - chr1_2:64831514-64831533 None:intergenic 30.0%
AATACATGGATAATAGATCC+AGG - chr1_2:64831790-64831809 None:intergenic 30.0%
CATCTACAGAAATGAATACA+TGG - chr1_2:64831804-64831823 None:intergenic 30.0%
CTTGATATTGATAAGGAAAG+TGG - chr1_2:64832103-64832122 None:intergenic 30.0%
TTCCTTATCAATATCAAGCA+AGG + chr1_2:64832105-64832124 Msa0085000:intron 30.0%
AGTGAAATTGAGAAATATCC+TGG + chr1_2:64832141-64832160 Msa0085000:intron 30.0%
GTTGGAGCATATAAATCATA+TGG + chr1_2:64832338-64832357 Msa0085000:intron 30.0%
AATTTGACAAAGTTGTGATG+TGG + chr1_2:64832430-64832449 Msa0085000:intron 30.0%
!! AATTTGTTAAGCACGACTTA+GGG + chr1_2:64832512-64832531 Msa0085000:intron 30.0%
! AGGCAATATAAAATTGACTC+TGG - chr1_2:64832629-64832648 None:intergenic 30.0%
! GTCAATTTTATATTGCCTCA+AGG + chr1_2:64832631-64832650 Msa0085000:intron 30.0%
TGGATGACCTATAAAAGTAA+AGG - chr1_2:64832778-64832797 None:intergenic 30.0%
CATATTGTGAATATCACTAC+AGG + chr1_2:64832879-64832898 Msa0085000:three_prime_UTR 30.0%
TTATAAACATAGGTTCGTTC+AGG - chr1_2:64833091-64833110 None:intergenic 30.0%
TGAACGAACCTATGTTTATA+AGG + chr1_2:64833090-64833109 Msa0085000:intron 30.0%
GAACGAACCTATGTTTATAA+GGG + chr1_2:64833091-64833110 Msa0085000:intron 30.0%
TGTCTTTCCCTTATAAACAT+AGG - chr1_2:64833101-64833120 None:intergenic 30.0%
! TAACATATTTTCACGAGTCA+GGG + chr1_2:64833142-64833161 Msa0085000:intron 30.0%
AATCATATTGGGGATAATTG+GGG - chr1_2:64833218-64833237 None:intergenic 30.0%
!! TAATCAACCCAACTGTTTTT+GGG + chr1_2:64833406-64833425 Msa0085000:intron 30.0%
GATAAAACCCAAAAACAGTT+GGG - chr1_2:64833416-64833435 None:intergenic 30.0%
AGATAAAACCCAAAAACAGT+TGG - chr1_2:64833417-64833436 None:intergenic 30.0%
!!! GTTTTTGGGTTTTATCTCAT+CGG + chr1_2:64833420-64833439 Msa0085000:intron 30.0%
AAGGATAAGTGATGAAAGTT+TGG - chr1_2:64833533-64833552 None:intergenic 30.0%
AAATGTTGTATCTTGTTGAC+AGG + chr1_2:64833647-64833666 Msa0085000:intron 30.0%
ATGACTGTAACTCTATAATG+CGG - chr1_2:64833866-64833885 None:intergenic 30.0%
CTACTTCTTTCAAACATCAA+CGG - chr1_2:64833934-64833953 None:intergenic 30.0%
GTTGATGTTTGAAAGAAGTA+GGG + chr1_2:64833933-64833952 Msa0085000:intron 30.0%
!! GACGGTTATTTTATAACACT+TGG - chr1_2:64833986-64834005 None:intergenic 30.0%
GTTGGCATAAGTGAAAATTA+TGG + chr1_2:64834106-64834125 Msa0085000:intron 30.0%
TTGAGGGCTCATATTTAATT+AGG - chr1_2:64834233-64834252 None:intergenic 30.0%
! AATCAACACCCATTTTCTTA+TGG + chr1_2:64834498-64834517 Msa0085000:intron 30.0%
! ATCAACACCCATTTTCTTAT+GGG + chr1_2:64834499-64834518 Msa0085000:intron 30.0%
GATTTCACCCATAAGAAAAT+GGG - chr1_2:64834509-64834528 None:intergenic 30.0%
TGATTTCACCCATAAGAAAA+TGG - chr1_2:64834510-64834529 None:intergenic 30.0%
! ATTTTCTTATGGGTGAAATC+AGG + chr1_2:64834509-64834528 Msa0085000:intron 30.0%
AGTCTCACCATATTGAAAAT+GGG - chr1_2:64834559-64834578 None:intergenic 30.0%
AATGTGTCAGAACATTTAGA+GGG + chr1_2:64834828-64834847 Msa0085000:three_prime_UTR 30.0%
GTTTGATTGCATATGATATG+GGG + chr1_2:64834971-64834990 Msa0085000:three_prime_UTR 30.0%
!!! CTAATCAAAACCCCTTTTTT+TGG + chr1_2:64835005-64835024 Msa0085000:three_prime_UTR 30.0%
! CATAAGGTTTCGAATTTTGA+CGG + chr1_2:64835126-64835145 Msa0085000:three_prime_UTR 30.0%
!!! AGTTTTTTGTTTTATGGCGA+TGG + chr1_2:64835241-64835260 Msa0085000:three_prime_UTR 30.0%
!!! GTTTTTTGTTTTATGGCGAT+GGG + chr1_2:64835242-64835261 Msa0085000:three_prime_UTR 30.0%
!!! GAATGAATGGATTTTCAGGT+TGG - chr1_2:64828003-64828022 None:intergenic 35.0%
!! CACTGAATGAATGGATTTTC+AGG - chr1_2:64828007-64828026 None:intergenic 35.0%
CTGAAAATCCATTCATTCAG+TGG + chr1_2:64828005-64828024 Msa0085000:CDS 35.0%
TGTTCAATCCACTGAATGAA+TGG - chr1_2:64828016-64828035 None:intergenic 35.0%
!! AAGAGTGTCTGTGAATTAAG+TGG - chr1_2:64828171-64828190 None:intergenic 35.0%
ATTATCTTGCCCCTTATAGA+AGG - chr1_2:64828271-64828290 None:intergenic 35.0%
TTAAATATCGCAGATGGTGA+TGG + chr1_2:64828660-64828679 Msa0085000:intron 35.0%
ACAATAACTGTTACCACATG+GGG - chr1_2:64828923-64828942 None:intergenic 35.0%
CACAATAACTGTTACCACAT+GGG - chr1_2:64828924-64828943 None:intergenic 35.0%
ACACAATAACTGTTACCACA+TGG - chr1_2:64828925-64828944 None:intergenic 35.0%
TGTGGTAACAGTTATTGTGT+TGG + chr1_2:64828925-64828944 Msa0085000:intron 35.0%
GTGGTAACAGTTATTGTGTT+GGG + chr1_2:64828926-64828945 Msa0085000:intron 35.0%
! TATATGTGCAAGGTGTTAGA+AGG + chr1_2:64828984-64829003 Msa0085000:intron 35.0%
CTTTCTTGGATTCTTGTGTA+GGG + chr1_2:64829028-64829047 Msa0085000:intron 35.0%
TTTCTTGGATTCTTGTGTAG+GGG + chr1_2:64829029-64829048 Msa0085000:intron 35.0%
ATGTTTCAACCCATACGATT+GGG + chr1_2:64829286-64829305 Msa0085000:intron 35.0%
!! GTTTGTTATCAATCTTGTGC+AGG + chr1_2:64829428-64829447 Msa0085000:intron 35.0%
ACAGATTCTGTATCGAGTTT+AGG + chr1_2:64829455-64829474 Msa0085000:three_prime_UTR 35.0%
TGAGCCACTGTAAGATTTAA+CGG - chr1_2:64829655-64829674 None:intergenic 35.0%
ATTCATCAAAACCAGCAATG+AGG - chr1_2:64829700-64829719 None:intergenic 35.0%
! GACTTCCTTATGTCGTTTAA+TGG + chr1_2:64829752-64829771 Msa0085000:three_prime_UTR 35.0%
GAAGATAGATTACTACCATC+GGG - chr1_2:64829812-64829831 None:intergenic 35.0%
AGTACATATTGTTCTCCCTA+AGG - chr1_2:64829903-64829922 None:intergenic 35.0%
TTAGGGAGAACAATATGTAC+TGG + chr1_2:64829902-64829921 Msa0085000:intron 35.0%
!!! TTTTGGGTTCCATATTCTCA+AGG - chr1_2:64829942-64829961 None:intergenic 35.0%
AGAATATGGAACCCAAAAAG+TGG + chr1_2:64829944-64829963 Msa0085000:three_prime_UTR 35.0%
!!! GAATGCTTTCTCCACTTTTT+GGG - chr1_2:64829958-64829977 None:intergenic 35.0%
!! TGAATGCTTTCTCCACTTTT+TGG - chr1_2:64829959-64829978 None:intergenic 35.0%
TTAGAAGTTCTCTTGTAGAC+AGG - chr1_2:64830113-64830132 None:intergenic 35.0%
AAAGGAGTTAGTTGTACAGT+AGG + chr1_2:64830416-64830435 Msa0085000:intron 35.0%
! TGGCCGACATTTTTGTAATA+AGG - chr1_2:64830485-64830504 None:intergenic 35.0%
!! AGAGTAGTTCTAATACTGTG+TGG - chr1_2:64830505-64830524 None:intergenic 35.0%
TCAGAGATTTATCCCTTTGA+GGG - chr1_2:64830580-64830599 None:intergenic 35.0%
ATCAGAGATTTATCCCTTTG+AGG - chr1_2:64830581-64830600 None:intergenic 35.0%
AATGTGGATCTTCTATCATC+CGG + chr1_2:64830681-64830700 Msa0085000:intron 35.0%
! CATATCAGATTTGCTCTACA+AGG - chr1_2:64830861-64830880 None:intergenic 35.0%
! AGAAAGATGTGGATTAAGCT+TGG + chr1_2:64831094-64831113 Msa0085000:intron 35.0%
! ATGCTTTATTACTCGTAACC+GGG + chr1_2:64831269-64831288 Msa0085000:intron 35.0%
GTATACATACAACAACTACC+CGG - chr1_2:64831290-64831309 None:intergenic 35.0%
AGCAAACGGGATGTAAATAT+TGG - chr1_2:64831328-64831347 None:intergenic 35.0%
AATATTTACATCCCGTTTGC+TGG + chr1_2:64831327-64831346 Msa0085000:intron 35.0%
TCCTTAAACACCCATTATGA+TGG + chr1_2:64831516-64831535 Msa0085000:intron 35.0%
ATGTTCACTACCACATAATG+GGG - chr1_2:64831559-64831578 None:intergenic 35.0%
CATGTTCACTACCACATAAT+GGG - chr1_2:64831560-64831579 None:intergenic 35.0%
ACATGTTCACTACCACATAA+TGG - chr1_2:64831561-64831580 None:intergenic 35.0%
GAATCTACAGGAGTAAATAC+AGG - chr1_2:64831768-64831787 None:intergenic 35.0%
TATTTACTCCTGTAGATTCC+TGG + chr1_2:64831769-64831788 Msa0085000:intron 35.0%
TAATAGATCCAGGAATCTAC+AGG - chr1_2:64831780-64831799 None:intergenic 35.0%
TATTCATTTCTGTAGATGCC+TGG + chr1_2:64831806-64831825 Msa0085000:intron 35.0%
TATCATCCAAAACAGAAACC+TGG + chr1_2:64831832-64831851 Msa0085000:intron 35.0%
TCAGAGCTCTTTAGACTATT+TGG + chr1_2:64831882-64831901 Msa0085000:intron 35.0%
CAGAGCTCTTTAGACTATTT+GGG + chr1_2:64831883-64831902 Msa0085000:intron 35.0%
ATTGATAAGCAAGAAGGTTG+TGG - chr1_2:64832023-64832042 None:intergenic 35.0%
GACCTTGCTTGATATTGATA+AGG - chr1_2:64832110-64832129 None:intergenic 35.0%
ATTCATGTCAAATTGCAGCT+TGG + chr1_2:64832189-64832208 Msa0085000:intron 35.0%
!! CAGCTTGGTCGATTTTATAT+AGG + chr1_2:64832204-64832223 Msa0085000:intron 35.0%
TTATATGCTCCAACTTGAGA+GGG - chr1_2:64832332-64832351 None:intergenic 35.0%
TTTATATGCTCCAACTTGAG+AGG - chr1_2:64832333-64832352 None:intergenic 35.0%
! AGAAGCATATTGAGATAGAC+TGG - chr1_2:64832485-64832504 None:intergenic 35.0%
AGTCGTGCTTAACAAATTGA+GGG - chr1_2:64832510-64832529 None:intergenic 35.0%
AAGTCGTGCTTAACAAATTG+AGG - chr1_2:64832511-64832530 None:intergenic 35.0%
!! CAATTTGTTAAGCACGACTT+AGG + chr1_2:64832511-64832530 Msa0085000:intron 35.0%
CTCAATATGAAATGAGCCTA+TGG - chr1_2:64832546-64832565 None:intergenic 35.0%
TGCTAAACATGTTAATCCCT+CGG - chr1_2:64832808-64832827 None:intergenic 35.0%
ACTTCAACTATTGCTCTTAC+TGG + chr1_2:64832837-64832856 Msa0085000:three_prime_UTR 35.0%
TAATGTGAGACTCAACATTC+TGG - chr1_2:64833056-64833075 None:intergenic 35.0%
TTAGAAACTAATGTGGGGAA+GGG - chr1_2:64833125-64833144 None:intergenic 35.0%
! CTAACATATTTTCACGAGTC+AGG + chr1_2:64833141-64833160 Msa0085000:intron 35.0%
! GATTAGTCAAAAGTTTGGCT+TGG + chr1_2:64833342-64833361 Msa0085000:intron 35.0%
! GTAATCAACCCAACTGTTTT+TGG + chr1_2:64833405-64833424 Msa0085000:intron 35.0%
AAAAGGAACAAACTAGCACA+AGG - chr1_2:64833552-64833571 None:intergenic 35.0%
TCAATGGAACTTGAATGAGA+AGG - chr1_2:64833687-64833706 None:intergenic 35.0%
!! GCTAGTCTTAAAACATACCT+TGG - chr1_2:64833726-64833745 None:intergenic 35.0%
TGACTGTAACTCTATAATGC+GGG - chr1_2:64833865-64833884 None:intergenic 35.0%
CGTTGATGTTTGAAAGAAGT+AGG + chr1_2:64833932-64833951 Msa0085000:intron 35.0%
GTAATTCCATCTCATTCTCA+AGG + chr1_2:64834042-64834061 Msa0085000:intron 35.0%
ATCATTCCTTGAGAATGAGA+TGG - chr1_2:64834051-64834070 None:intergenic 35.0%
TCCTTAAAACTGTATGACAG+TGG + chr1_2:64834262-64834281 Msa0085000:intron 35.0%
! ACCACTGTCATACAGTTTTA+AGG - chr1_2:64834266-64834285 None:intergenic 35.0%
CATGGATAAAATGACCATCT+GGG + chr1_2:64834306-64834325 Msa0085000:three_prime_UTR 35.0%
GAGTCTCACCATATTGAAAA+TGG - chr1_2:64834560-64834579 None:intergenic 35.0%
ATAGGATATGCATGAACATC+AGG - chr1_2:64834649-64834668 None:intergenic 35.0%
GAATGTGTCAGAACATTTAG+AGG + chr1_2:64834827-64834846 Msa0085000:three_prime_UTR 35.0%
ATGCTTGTGTGCCAAAAAAA+GGG - chr1_2:64835019-64835038 None:intergenic 35.0%
CAAGCATGTATATGTCCTTT+AGG + chr1_2:64835032-64835051 Msa0085000:three_prime_UTR 35.0%
GAGTCAAAAACTGTTGCATA+AGG + chr1_2:64835110-64835129 Msa0085000:three_prime_UTR 35.0%
!! ATTTCTGCTCTAGAATGTCT+AGG - chr1_2:64835153-64835172 None:intergenic 35.0%
! GGTTGGCGTCTAAAATAACA+CGG - chr1_2:64827986-64828005 None:intergenic 40.0%
GGAGAAGAATATGAAGCAGT+GGG - chr1_2:64828207-64828226 None:intergenic 40.0%
AGGAGAAGAATATGAAGCAG+TGG - chr1_2:64828208-64828227 None:intergenic 40.0%
! CAGCTTTGTAGAAGTTGGAA+AGG - chr1_2:64828228-64828247 None:intergenic 40.0%
! TGGTTCAGCTTTGTAGAAGT+TGG - chr1_2:64828233-64828252 None:intergenic 40.0%
GATTCTGTGCATACATTCAC+TGG + chr1_2:64828778-64828797 Msa0085000:three_prime_UTR 40.0%
CATACATTCACTGGTCATGA+TGG + chr1_2:64828787-64828806 Msa0085000:three_prime_UTR 40.0%
! TGTTTTTCCTTTTTCCGTCC+TGG + chr1_2:64828834-64828853 Msa0085000:intron 40.0%
AATCAAACCAGGACGGAAAA+AGG - chr1_2:64828844-64828863 None:intergenic 40.0%
!! TTTTTCCGTCCTGGTTTGAT+TGG + chr1_2:64828843-64828862 Msa0085000:intron 40.0%
!! TTTTCCGTCCTGGTTTGATT+GGG + chr1_2:64828844-64828863 Msa0085000:intron 40.0%
GCTTTCTTGGATTCTTGTGT+AGG + chr1_2:64829027-64829046 Msa0085000:intron 40.0%
! TTTCTCTGGAGGATCCTTAA+TGG + chr1_2:64829123-64829142 Msa0085000:three_prime_UTR 40.0%
GAGGATCCTTAATGGAGAAT+GGG + chr1_2:64829131-64829150 Msa0085000:three_prime_UTR 40.0%
!! AGTGGTTAGTTTGTTAGGGT+AGG + chr1_2:64829202-64829221 Msa0085000:intron 40.0%
!! GTGGTTAGTTTGTTAGGGTA+GGG + chr1_2:64829203-64829222 Msa0085000:intron 40.0%
!! TGGTTAGTTTGTTAGGGTAG+GGG + chr1_2:64829204-64829223 Msa0085000:intron 40.0%
TAGTAGCAGAGATTGAACTC+TGG + chr1_2:64829240-64829259 Msa0085000:intron 40.0%
ACATCGAAGGAGTTCAATGT+AGG - chr1_2:64829270-64829289 None:intergenic 40.0%
GATGTTTCAACCCATACGAT+TGG + chr1_2:64829285-64829304 Msa0085000:intron 40.0%
ATGCAGATACCCAATCGTAT+GGG - chr1_2:64829298-64829317 None:intergenic 40.0%
TATGCAGATACCCAATCGTA+TGG - chr1_2:64829299-64829318 None:intergenic 40.0%
!! TGTGGCATTGGCATGATAAT+TGG + chr1_2:64829367-64829386 Msa0085000:intron 40.0%
! AGTTTAGGATTTAGCCACGA+TGG + chr1_2:64829470-64829489 Msa0085000:three_prime_UTR 40.0%
! AATCTGAAAGGCACGTTAGA+TGG + chr1_2:64829551-64829570 Msa0085000:three_prime_UTR 40.0%
GTTGCCGTTAAATCTTACAG+TGG + chr1_2:64829648-64829667 Msa0085000:intron 40.0%
GTTAAATCTTACAGTGGCTC+AGG + chr1_2:64829654-64829673 Msa0085000:intron 40.0%
CGTGACCATTAAACGACATA+AGG - chr1_2:64829760-64829779 None:intergenic 40.0%
ACGATGCAACCTTGAGAATA+TGG + chr1_2:64829930-64829949 Msa0085000:three_prime_UTR 40.0%
! GTTTAAGATGCTTCGAACAC+CGG + chr1_2:64830077-64830096 Msa0085000:intron 40.0%
! CTCAAATTCTAGTTGAGGCA+AGG - chr1_2:64830254-64830273 None:intergenic 40.0%
! CGCTTCTCAAATTCTAGTTG+AGG - chr1_2:64830259-64830278 None:intergenic 40.0%
CAGTGATCTTATAGTGAGCT+AGG + chr1_2:64830452-64830471 Msa0085000:intron 40.0%
ATGAGAATTGGGCATCTAAC+CGG - chr1_2:64830703-64830722 None:intergenic 40.0%
AAAACCTTCTGATACTCCTC+TGG + chr1_2:64830812-64830831 Msa0085000:intron 40.0%
CTACATAGTCTACCCATACT+TGG + chr1_2:64830942-64830961 Msa0085000:intron 40.0%
CATCTTTCTCACAAACTGCT+AGG - chr1_2:64831083-64831102 None:intergenic 40.0%
AGCAGTTTGTGAGAAAGATG+TGG + chr1_2:64831083-64831102 Msa0085000:intron 40.0%
AGTCTTGCATATGCTCTCTT+GGG - chr1_2:64831209-64831228 None:intergenic 40.0%
AAACACACAACAATGGGGTT+TGG - chr1_2:64831238-64831257 None:intergenic 40.0%
ATTGGCAATATCCAGCAAAC+GGG - chr1_2:64831341-64831360 None:intergenic 40.0%
CATTGGCAATATCCAGCAAA+CGG - chr1_2:64831342-64831361 None:intergenic 40.0%
! CAAAGTGAGGAGTATGCTAA+TGG + chr1_2:64831374-64831393 Msa0085000:intron 40.0%
! GGTGACTGACTTTACAATAG+AGG + chr1_2:64831395-64831414 Msa0085000:intron 40.0%
AATCGGAACCTGATTGTTGT+TGG + chr1_2:64831432-64831451 Msa0085000:intron 40.0%
AACGGTTTCCAACAACAATC+AGG - chr1_2:64831443-64831462 None:intergenic 40.0%
CAAGTATAAGGCTCAACTTG+AGG - chr1_2:64831469-64831488 None:intergenic 40.0%
!! GCCATCATAATGGGTGTTTA+AGG - chr1_2:64831520-64831539 None:intergenic 40.0%
ATCTGCAGTGCCATCATAAT+GGG - chr1_2:64831529-64831548 None:intergenic 40.0%
AATCTGCAGTGCCATCATAA+TGG - chr1_2:64831530-64831549 None:intergenic 40.0%
TTATGATGGCACTGCAGATT+AGG + chr1_2:64831530-64831549 Msa0085000:intron 40.0%
TACTGCTTATTGCCTAGACA+AGG + chr1_2:64831633-64831652 Msa0085000:intron 40.0%
ACCTTAGTAGAAAGGGTAGT+TGG - chr1_2:64831670-64831689 None:intergenic 40.0%
!! CTGTTTTGGATGATAGATCC+AGG - chr1_2:64831827-64831846 None:intergenic 40.0%
AGCTCTTTAGACTATTTGGG+CGG + chr1_2:64831886-64831905 Msa0085000:intron 40.0%
CTAGATTTGACAACATTCCC+AGG - chr1_2:64831939-64831958 None:intergenic 40.0%
CTGGGAATGTTGTCAAATCT+AGG + chr1_2:64831937-64831956 Msa0085000:intron 40.0%
!! ACTGATTTGTGTACCTCTCA+AGG + chr1_2:64832382-64832401 Msa0085000:intron 40.0%
GTGTTCACTAAATCCTTGAG+AGG - chr1_2:64832398-64832417 None:intergenic 40.0%
GCTAGGGAGAAGATCAAATT+GGG - chr1_2:64832456-64832475 None:intergenic 40.0%
TGCTAGGGAGAAGATCAAAT+TGG - chr1_2:64832457-64832476 None:intergenic 40.0%
GTCGTGCTTAACAAATTGAG+GGG - chr1_2:64832509-64832528 None:intergenic 40.0%
AGAGAGACAAAGGAGACATA+TGG + chr1_2:64832578-64832597 Msa0085000:intron 40.0%
! CATATGGTGACACCATGTTT+TGG + chr1_2:64832594-64832613 Msa0085000:intron 40.0%
TGGTGTGTAGTTCCAAAACA+TGG - chr1_2:64832609-64832628 None:intergenic 40.0%
AACATGTTAATCCCTCGGTA+TGG - chr1_2:64832803-64832822 None:intergenic 40.0%
!! TATTGCTCTTACTGGTTCTG+TGG + chr1_2:64832845-64832864 Msa0085000:three_prime_UTR 40.0%
GTTAGAAACTAATGTGGGGA+AGG - chr1_2:64833126-64833145 None:intergenic 40.0%
!! TAGTCAAAAGTTTGGCTTGG+TGG + chr1_2:64833345-64833364 Msa0085000:intron 40.0%
!! TTGGGTTGATTACCTACTCA+AGG - chr1_2:64833398-64833417 None:intergenic 40.0%
TAATGTGGTCTGTGTAGTAC+TGG + chr1_2:64833475-64833494 Msa0085000:intron 40.0%
TTGCAGCATGCAAAGACAAA+AGG - chr1_2:64833569-64833588 None:intergenic 40.0%
TCAAGTTCCATTGAGTGTGT+TGG + chr1_2:64833693-64833712 Msa0085000:three_prime_UTR 40.0%
TCATGTCCATGTATGCTTGT+CGG + chr1_2:64833788-64833807 Msa0085000:intron 40.0%
GCATGGATAAAATGACCATC+TGG + chr1_2:64834305-64834324 Msa0085000:three_prime_UTR 40.0%
TTTGTGAGCATGAGGTTTGT+TGG + chr1_2:64834356-64834375 Msa0085000:intron 40.0%
TTCTTATGGGTGAAATCAGG+TGG + chr1_2:64834512-64834531 Msa0085000:intron 40.0%
TCTTATGGGTGAAATCAGGT+GGG + chr1_2:64834513-64834532 Msa0085000:intron 40.0%
! TGTGGAGCCCATTTTCAATA+TGG + chr1_2:64834549-64834568 Msa0085000:intron 40.0%
TTTCCATTCTCTGAGCAGTA+TGG + chr1_2:64834716-64834735 Msa0085000:intron 40.0%
! ATGATGGAGCTGTGAGATTA+TGG + chr1_2:64834789-64834808 Msa0085000:three_prime_UTR 40.0%
TGATGGAGCTGTGAGATTAT+GGG + chr1_2:64834790-64834809 Msa0085000:three_prime_UTR 40.0%
TAATCACGAGTACCTTGTCT+CGG + chr1_2:64834886-64834905 Msa0085000:three_prime_UTR 40.0%
! GCTCGTGTTTTCGATGTTAA+AGG + chr1_2:64834926-64834945 Msa0085000:three_prime_UTR 40.0%
TGCTTGTGTGCCAAAAAAAG+GGG - chr1_2:64835018-64835037 None:intergenic 40.0%
CATGCTTGTGTGCCAAAAAA+AGG - chr1_2:64835020-64835039 None:intergenic 40.0%
!! GTATATGTCCTTTAGGACAG+CGG + chr1_2:64835039-64835058 Msa0085000:three_prime_UTR 40.0%
!! TATATGTCCTTTAGGACAGC+GGG + chr1_2:64835040-64835059 Msa0085000:three_prime_UTR 40.0%
! TGGCGTCTAAAATAACACGG+AGG - chr1_2:64827983-64828002 None:intergenic 45.0%
!! AGTGCTGCTTTCACTTGTGT+AGG + chr1_2:64828135-64828154 Msa0085000:intron 45.0%
GGAAGAAGTTCATCGTCAGA+GGG - chr1_2:64828506-64828525 None:intergenic 45.0%
AGGAAGAAGTTCATCGTCAG+AGG - chr1_2:64828507-64828526 None:intergenic 45.0%
ATGTTACTATGTAGGCCACC+TGG - chr1_2:64828587-64828606 None:intergenic 45.0%
!! TTTGATTGGGTTGGGAACCT+AGG + chr1_2:64828857-64828876 Msa0085000:intron 45.0%
! AGAAGCACACTACAAGTCCT+AGG - chr1_2:64828877-64828896 None:intergenic 45.0%
CTTGTAGTGTGCTTCTCTCT+AGG + chr1_2:64828881-64828900 Msa0085000:intron 45.0%
CATGTTCAAATCTCCCCATG+TGG + chr1_2:64828907-64828926 Msa0085000:intron 45.0%
! GTGATGACGTAGGATTTCTC+TGG + chr1_2:64829109-64829128 Msa0085000:three_prime_UTR 45.0%
ATGACGTAGGATTTCTCTGG+AGG + chr1_2:64829112-64829131 Msa0085000:three_prime_UTR 45.0%
GGAGGATCCTTAATGGAGAA+TGG + chr1_2:64829130-64829149 Msa0085000:three_prime_UTR 45.0%
!! GGTTAGTTTGTTAGGGTAGG+GGG + chr1_2:64829205-64829224 Msa0085000:intron 45.0%
TCGAAGGAGTTCAATGTAGG+AGG - chr1_2:64829267-64829286 None:intergenic 45.0%
! CGTATGGGTTGAAACATCGA+AGG - chr1_2:64829283-64829302 None:intergenic 45.0%
!! CTGGCATCAGGAAGTTTTGA+TGG + chr1_2:64829500-64829519 Msa0085000:three_prime_UTR 45.0%
! GTTAAAATCTGGGATGCGTC+TGG + chr1_2:64829527-64829546 Msa0085000:three_prime_UTR 45.0%
GATGCGTCTGGAAATCTGAA+AGG + chr1_2:64829539-64829558 Msa0085000:three_prime_UTR 45.0%
AAATCTTACAGTGGCTCAGG+TGG + chr1_2:64829657-64829676 Msa0085000:intron 45.0%
GCAATGAGGACATTTCCTCT+TGG - chr1_2:64829686-64829705 None:intergenic 45.0%
AGAGGAAATGTCCTCATTGC+TGG + chr1_2:64829686-64829705 Msa0085000:three_prime_UTR 45.0%
TTGATGAATCCTCCTCAGTG+TGG + chr1_2:64829711-64829730 Msa0085000:three_prime_UTR 45.0%
! ATGTCGTTTAATGGTCACGC+TGG + chr1_2:64829761-64829780 Msa0085000:three_prime_UTR 45.0%
ATCGGGAGTAAAATCACCAC+AGG - chr1_2:64829795-64829814 None:intergenic 45.0%
! TGTGGTGATTTTACTCCCGA+TGG + chr1_2:64829794-64829813 Msa0085000:three_prime_UTR 45.0%
!! GAAAGCATTCATGTTGTGCG+AGG + chr1_2:64829968-64829987 Msa0085000:three_prime_UTR 45.0%
AGTTCTCTTGTAGACAGGAG+AGG - chr1_2:64830108-64830127 None:intergenic 45.0%
GTGAGTGAGCAAAGGAAAGT+TGG + chr1_2:64830545-64830564 Msa0085000:intron 45.0%
TTGGTATCAGACACCCTCAA+AGG + chr1_2:64830564-64830583 Msa0085000:intron 45.0%
TGGTATCAGACACCCTCAAA+GGG + chr1_2:64830565-64830584 Msa0085000:intron 45.0%
TGGTCAAAGAAAGCCACTAG+TGG - chr1_2:64830623-64830642 None:intergenic 45.0%
AATTTACTCCCAACCTCCAG+AGG - chr1_2:64830831-64830850 None:intergenic 45.0%
! CATTTGGGATCGGCTAGAAA+AGG - chr1_2:64830986-64831005 None:intergenic 45.0%
ACACTGGGTGTGAAAAGAGA+GGG + chr1_2:64831155-64831174 Msa0085000:intron 45.0%
GAGTCTTGCATATGCTCTCT+TGG - chr1_2:64831210-64831229 None:intergenic 45.0%
ACCCCATTGTTGTGTGTTTG+AGG + chr1_2:64831239-64831258 Msa0085000:intron 45.0%
CCCTCAAACACACAACAATG+GGG - chr1_2:64831243-64831262 None:intergenic 45.0%
CCCCATTGTTGTGTGTTTGA+GGG + chr1_2:64831240-64831259 Msa0085000:intron 45.0%
GCCCTCAAACACACAACAAT+GGG - chr1_2:64831244-64831263 None:intergenic 45.0%
TGCCCTCAAACACACAACAA+TGG - chr1_2:64831245-64831264 None:intergenic 45.0%
CTTTGACGCTCACTCATCAT+TGG - chr1_2:64831359-64831378 None:intergenic 45.0%
AGGCTCAACTTGAGGCAAAA+CGG - chr1_2:64831461-64831480 None:intergenic 45.0%
! TTCACTACCACATAATGGGG+TGG - chr1_2:64831556-64831575 None:intergenic 45.0%
GCCAACTACCCTTTCTACTA+AGG + chr1_2:64831666-64831685 Msa0085000:intron 45.0%
TACAGGTAGCAGCAACAAGA+GGG - chr1_2:64831751-64831770 None:intergenic 45.0%
ATACAGGTAGCAGCAACAAG+AGG - chr1_2:64831752-64831771 None:intergenic 45.0%
!! AGAGTGCCAGGTTTCTGTTT+TGG - chr1_2:64831841-64831860 None:intergenic 45.0%
GCTCTTTAGACTATTTGGGC+GGG + chr1_2:64831887-64831906 Msa0085000:intron 45.0%
CTCTTTAGACTATTTGGGCG+GGG + chr1_2:64831888-64831907 Msa0085000:intron 45.0%
TTTGACAACATTCCCAGGAC+AGG - chr1_2:64831934-64831953 None:intergenic 45.0%
TTCAACACTCCCTCTCAAGT+TGG + chr1_2:64832320-64832339 Msa0085000:intron 45.0%
GATAGACTGGCACATTGCTA+GGG - chr1_2:64832472-64832491 None:intergenic 45.0%
AGATAGACTGGCACATTGCT+AGG - chr1_2:64832473-64832492 None:intergenic 45.0%
TGTTAAGCACGACTTAGGGT+TGG + chr1_2:64832516-64832535 Msa0085000:intron 45.0%
AGAGTGAGAGAGAGAGACAA+AGG + chr1_2:64832568-64832587 Msa0085000:intron 45.0%
GTTAATCCCTCGGTATGGTA+TGG - chr1_2:64832798-64832817 None:intergenic 45.0%
ACACTATGAGCTCCTTGAGT+AGG + chr1_2:64833383-64833402 Msa0085000:intron 45.0%
! GTGATGAAAGTTTGGAGCCT+TGG - chr1_2:64833525-64833544 None:intergenic 45.0%
GGAACTTGAATGAGAAGGCA+GGG - chr1_2:64833682-64833701 None:intergenic 45.0%
TGGAACTTGAATGAGAAGGC+AGG - chr1_2:64833683-64833702 None:intergenic 45.0%
TGCGAATCCAACACACTCAA+TGG - chr1_2:64833703-64833722 None:intergenic 45.0%
CATGATCCGACAAGCATACA+TGG - chr1_2:64833797-64833816 None:intergenic 45.0%
TGTCGGATCATGCATGTGTA+TGG + chr1_2:64833805-64833824 Msa0085000:intron 45.0%
ACCGTCAGTGACTTTGTTCA+CGG + chr1_2:64834000-64834019 Msa0085000:intron 45.0%
ACCGTGAACAAAGTCACTGA+CGG - chr1_2:64834004-64834023 None:intergenic 45.0%
AACTGTATGACAGTGGTTCC+TGG + chr1_2:64834269-64834288 Msa0085000:intron 45.0%
ACTGTATGACAGTGGTTCCT+GGG + chr1_2:64834270-64834289 Msa0085000:intron 45.0%
CTCATGCTCACAAATGCTTC+GGG - chr1_2:64834350-64834369 None:intergenic 45.0%
CCTCATGCTCACAAATGCTT+CGG - chr1_2:64834351-64834370 None:intergenic 45.0%
TGTTAGAACTACTCGACGAG+AGG - chr1_2:64834452-64834471 None:intergenic 45.0%
TGGGCTCCACATAAAGTTGT+GGG - chr1_2:64834540-64834559 None:intergenic 45.0%
ATGGGCTCCACATAAAGTTG+TGG - chr1_2:64834541-64834560 None:intergenic 45.0%
ACTCCATACTGCTCAGAGAA+TGG - chr1_2:64834722-64834741 None:intergenic 45.0%
ATGGAGTGACATGTTCAACC+TGG + chr1_2:64834735-64834754 Msa0085000:three_prime_UTR 45.0%
GTGGCTACTGGATCTAATGA+TGG + chr1_2:64834773-64834792 Msa0085000:three_prime_UTR 45.0%
AGATTATGGGACAGTCGATC+TGG + chr1_2:64834803-64834822 Msa0085000:three_prime_UTR 45.0%
GATCTAAAGAAGCCGAGACA+AGG - chr1_2:64834901-64834920 None:intergenic 45.0%
! CAACAATCTGGCTTCTGTAG+AGG - chr1_2:64835070-64835089 None:intergenic 45.0%
!! ATTCAAAATTAATATTAAAA+AGG - chr1_2:64835201-64835220 None:intergenic 5.0%
GAAGAGAACGCACCTGAGAA+TGG - chr1_2:64828056-64828075 None:intergenic 50.0%
CATCGTCAGAGGGAACTTCA+TGG - chr1_2:64828496-64828515 None:intergenic 50.0%
ACTATGTAGGCCACCTGGAT+CGG - chr1_2:64828582-64828601 None:intergenic 50.0%
!! ATCGCAGATGGTGATGGTGA+TGG + chr1_2:64828666-64828685 Msa0085000:intron 50.0%
!! GATGGTGATGGTGATGGTGA+TGG + chr1_2:64828672-64828691 Msa0085000:intron 50.0%
!! GATGGTGATGGTGATGGTGA+TGG + chr1_2:64828672-64828691 Msa0085000:intron 50.0%
! GTAATGGTGGTGTGTGTGTG+TGG + chr1_2:64828721-64828740 Msa0085000:intron 50.0%
CCAACCCAATCAAACCAGGA+CGG - chr1_2:64828851-64828870 None:intergenic 50.0%
! CGTCCTGGTTTGATTGGGTT+GGG + chr1_2:64828849-64828868 Msa0085000:intron 50.0%
GTTCCCAACCCAATCAAACC+AGG - chr1_2:64828855-64828874 None:intergenic 50.0%
CCACAAGTGCCTCATCTGTT+GGG - chr1_2:64829077-64829096 None:intergenic 50.0%
GGGAAGCCCATTCTCCATTA+AGG - chr1_2:64829140-64829159 None:intergenic 50.0%
! GAATGGGCTTCCCAGCTTAA+TGG + chr1_2:64829147-64829166 Msa0085000:three_prime_UTR 50.0%
TAGCCACGATGGAACGTTTC+TGG + chr1_2:64829481-64829500 Msa0085000:three_prime_UTR 50.0%
ATGCCAGAAACGTTCCATCG+TGG - chr1_2:64829487-64829506 None:intergenic 50.0%
!! GATGGAACGTTTCTGGCATC+AGG + chr1_2:64829488-64829507 Msa0085000:three_prime_UTR 50.0%
GCACGTTAGATGGTCCTGAA+GGG + chr1_2:64829561-64829580 Msa0085000:three_prime_UTR 50.0%
CACGTTAGATGGTCCTGAAG+GGG + chr1_2:64829562-64829581 Msa0085000:three_prime_UTR 50.0%
ACGTTAGATGGTCCTGAAGG+GGG + chr1_2:64829563-64829582 Msa0085000:three_prime_UTR 50.0%
AATCCTCCTCAGTGTGGATG+TGG + chr1_2:64829717-64829736 Msa0085000:three_prime_UTR 50.0%
ATTCCACATCCACACTGAGG+AGG - chr1_2:64829723-64829742 None:intergenic 50.0%
GCTATTCCACATCCACACTG+AGG - chr1_2:64829726-64829745 None:intergenic 50.0%
CTACTCTTTAACATGCCCCC+TGG + chr1_2:64830518-64830537 Msa0085000:intron 50.0%
! AGGCTTTAGTTGGCCACTAG+TGG + chr1_2:64830607-64830626 Msa0085000:intron 50.0%
! GGGGACTGAAATGATGATGC+TGG + chr1_2:64830741-64830760 Msa0085000:intron 50.0%
ACCTTCTGATACTCCTCTGG+AGG + chr1_2:64830815-64830834 Msa0085000:intron 50.0%
!! ACCTCCAGAGGAGTATCAGA+AGG - chr1_2:64830819-64830838 None:intergenic 50.0%
! TCTGATACTCCTCTGGAGGT+TGG + chr1_2:64830819-64830838 Msa0085000:intron 50.0%
! CTGATACTCCTCTGGAGGTT+GGG + chr1_2:64830820-64830839 Msa0085000:intron 50.0%
TGGGATCGGCTAGAAAAGGA+AGG - chr1_2:64830982-64831001 None:intergenic 50.0%
GGTGAGCTGGACAATATCCT+AGG - chr1_2:64831062-64831081 None:intergenic 50.0%
TCACAAACTGCTAGGTGAGC+TGG - chr1_2:64831075-64831094 None:intergenic 50.0%
AAGATGTGCTGTGACGACAC+TGG + chr1_2:64831139-64831158 Msa0085000:intron 50.0%
AGATGTGCTGTGACGACACT+GGG + chr1_2:64831140-64831159 Msa0085000:intron 50.0%
GACACTGGGTGTGAAAAGAG+AGG + chr1_2:64831154-64831173 Msa0085000:intron 50.0%
GCATATGCTCTCTTGGGTCT+AGG - chr1_2:64831203-64831222 None:intergenic 50.0%
GATGAGTGAGCGTCAAAGTG+AGG + chr1_2:64831361-64831380 Msa0085000:intron 50.0%
GATTAGGCCACCCCATTATG+TGG + chr1_2:64831546-64831565 Msa0085000:intron 50.0%
GCAGACAATGTGCCTTGTCT+AGG - chr1_2:64831648-64831667 None:intergenic 50.0%
CAGCAACAAGAGGGTTCCAT+GGG - chr1_2:64831742-64831761 None:intergenic 50.0%
ACAGAAACCTGGCACTCTCA+TGG + chr1_2:64831843-64831862 Msa0085000:intron 50.0%
!! TGTAAGACCATGAGAGTGCC+AGG - chr1_2:64831853-64831872 None:intergenic 50.0%
TTTAGACTATTTGGGCGGGG+AGG + chr1_2:64831891-64831910 Msa0085000:intron 50.0%
TTAGACTATTTGGGCGGGGA+GGG + chr1_2:64831892-64831911 Msa0085000:intron 50.0%
TCTTACGTTCAGACCTGTCC+TGG + chr1_2:64831918-64831937 Msa0085000:intron 50.0%
CTTACGTTCAGACCTGTCCT+GGG + chr1_2:64831919-64831938 Msa0085000:intron 50.0%
GAAGCTATAGTGAGTGTGCC+AGG - chr1_2:64832162-64832181 None:intergenic 50.0%
!! ACTTAGGGTTGGCTCTCCAT+AGG + chr1_2:64832527-64832546 Msa0085000:intron 50.0%
AGGTCATCCATACCATACCG+AGG + chr1_2:64832788-64832807 Msa0085000:intron 50.0%
GGTCATCCATACCATACCGA+GGG + chr1_2:64832789-64832808 Msa0085000:intron 50.0%
!! GCTCTTACTGGTTCTGTGGA+TGG + chr1_2:64832849-64832868 Msa0085000:three_prime_UTR 50.0%
CTGCAAGAGCTGACTAACCA+AGG + chr1_2:64833505-64833524 Msa0085000:intron 50.0%
AGTGTGTTGGATTCGCACCA+AGG + chr1_2:64833706-64833725 Msa0085000:three_prime_UTR 50.0%
GCACGAATGCACATAGACAC+AGG - chr1_2:64833762-64833781 None:intergenic 50.0%
CTCACAAATGCTTCGGGCTA+AGG - chr1_2:64834344-64834363 None:intergenic 50.0%
! CCGAAGCATTTGTGAGCATG+AGG + chr1_2:64834348-64834367 Msa0085000:three_prime_UTR 50.0%
TAGAACTACTCGACGAGAGG+AGG - chr1_2:64834449-64834468 None:intergenic 50.0%
GTGGGTCCCACAACTTTATG+TGG + chr1_2:64834531-64834550 Msa0085000:intron 50.0%
GTGACATGTTCAACCTGGCT+TGG + chr1_2:64834740-64834759 Msa0085000:three_prime_UTR 50.0%
GCACCTGAGAATGGAGACGA+CGG - chr1_2:64828047-64828066 None:intergenic 55.0%
GGATTGTCGTCAGGTGCATC+AGG - chr1_2:64828527-64828546 None:intergenic 55.0%
GCACCTGACGACAATCCAGA+TGG + chr1_2:64828530-64828549 Msa0085000:three_prime_UTR 55.0%
CCACCATCTGGATTGTCGTC+AGG - chr1_2:64828536-64828555 None:intergenic 55.0%
CCTGACGACAATCCAGATGG+TGG + chr1_2:64828533-64828552 Msa0085000:three_prime_UTR 55.0%
CTATGTAGGCCACCTGGATC+GGG - chr1_2:64828581-64828600 None:intergenic 55.0%
!! GGTGATGGTGATGGTGATGG+TGG + chr1_2:64828675-64828694 Msa0085000:three_prime_UTR 55.0%
!! GATGGTGATGGTGATGGTGG+TGG + chr1_2:64828684-64828703 Msa0085000:three_prime_UTR 55.0%
!! GATGGTGATGGTGGTGGTGA+TGG + chr1_2:64828690-64828709 Msa0085000:three_prime_UTR 55.0%
!! GGTGATGGTGGTGGTGGTAA+TGG + chr1_2:64828705-64828724 Msa0085000:intron 55.0%
!! GATGGTGGTGGTGGTAATGG+TGG + chr1_2:64828708-64828727 Msa0085000:intron 55.0%
! ATGGTGGTGTGTGTGTGTGG+TGG + chr1_2:64828724-64828743 Msa0085000:intron 55.0%
! CCGTCCTGGTTTGATTGGGT+TGG + chr1_2:64828848-64828867 Msa0085000:intron 55.0%
! CCCAACAGATGAGGCACTTG+TGG + chr1_2:64829074-64829093 Msa0085000:three_prime_UTR 55.0%
GCCACAAGTGCCTCATCTGT+TGG - chr1_2:64829078-64829097 None:intergenic 55.0%
! GATGAGGCACTTGTGGCAAC+AGG + chr1_2:64829081-64829100 Msa0085000:three_prime_UTR 55.0%
! ACAGGAGCTGGTGATGACGT+AGG + chr1_2:64829099-64829118 Msa0085000:three_prime_UTR 55.0%
!! AGTTTGTTAGGGTAGGGGGC+TGG + chr1_2:64829209-64829228 Msa0085000:intron 55.0%
GGCACGTTAGATGGTCCTGA+AGG + chr1_2:64829560-64829579 Msa0085000:three_prime_UTR 55.0%
CTTACCTCAACTCCCCCTTC+AGG - chr1_2:64829578-64829597 None:intergenic 55.0%
AGGGGGAGTTGAGGTAAGAC+TGG + chr1_2:64829580-64829599 Msa0085000:intron 55.0%
!! GTAGACAGGAGAGGTGTTGC+CGG - chr1_2:64830099-64830118 None:intergenic 55.0%
TCTTTAACATGCCCCCTGGC+AGG + chr1_2:64830522-64830541 Msa0085000:intron 55.0%
CTTTAACATGCCCCCTGGCA+GGG + chr1_2:64830523-64830542 Msa0085000:intron 55.0%
TTTGCTCACTCACCCTGCCA+GGG - chr1_2:64830538-64830557 None:intergenic 55.0%
CAACAAGAGGGTTCCATGGG+CGG - chr1_2:64831739-64831758 None:intergenic 55.0%
GCAGCAACAAGAGGGTTCCA+TGG - chr1_2:64831743-64831762 None:intergenic 55.0%
TAGACTATTTGGGCGGGGAG+GGG + chr1_2:64831893-64831912 Msa0085000:intron 55.0%
AGTGGTTCCTGGGCTGCAAT+TGG + chr1_2:64834280-64834299 Msa0085000:intron 55.0%
! GGAGTGCTCTACATCCCAGA+TGG - chr1_2:64834323-64834342 None:intergenic 55.0%
CACATACGATGTGCCAAGCC+AGG - chr1_2:64834756-64834775 None:intergenic 55.0%
!! CTGGCTTGGCACATCGTATG+TGG + chr1_2:64834754-64834773 Msa0085000:three_prime_UTR 55.0%
GGCACATCGTATGTGGCTAC+TGG + chr1_2:64834761-64834780 Msa0085000:three_prime_UTR 55.0%
CCTGAGAATGGAGACGACGG+CGG - chr1_2:64828044-64828063 None:intergenic 60.0%
!! GGTGATGGTGGTGGTGATGG+TGG + chr1_2:64828693-64828712 Msa0085000:three_prime_UTR 60.0%
!! GATGGTGGTGGTGATGGTGG+TGG + chr1_2:64828696-64828715 Msa0085000:three_prime_UTR 60.0%
GTGGTGTGTGTGTGTGGTGG+TGG + chr1_2:64828727-64828746 Msa0085000:intron 60.0%
!! GTGTGTGTGTGTGGTGGTGG+TGG + chr1_2:64828730-64828749 Msa0085000:intron 60.0%
!! TGTGTGTGTGGTGGTGGTGG+TGG + chr1_2:64828733-64828752 Msa0085000:intron 60.0%
TGCCTGCAGCCCAACAGATG+AGG + chr1_2:64829065-64829084 Msa0085000:three_prime_UTR 60.0%
TGCCTCATCTGTTGGGCTGC+AGG - chr1_2:64829070-64829089 None:intergenic 60.0%
GCACTTGTGGCAACAGGAGC+TGG + chr1_2:64829087-64829106 Msa0085000:three_prime_UTR 60.0%
TGGTCCTGAAGGGGGAGTTG+AGG + chr1_2:64829571-64829590 Msa0085000:three_prime_UTR 60.0%
TGGCTCAGGTGGCATCCAAG+AGG + chr1_2:64829668-64829687 Msa0085000:three_prime_UTR 60.0%
! CACGCTGGTAGTGTGACCTG+TGG + chr1_2:64829776-64829795 Msa0085000:three_prime_UTR 60.0%
TTGCTCACTCACCCTGCCAG+GGG - chr1_2:64830537-64830556 None:intergenic 60.0%
CTTTGCTCACTCACCCTGCC+AGG - chr1_2:64830539-64830558 None:intergenic 60.0%
CTGGCAGGGTGAGTGAGCAA+AGG + chr1_2:64830537-64830556 Msa0085000:intron 60.0%
TTTATGGAGCCCTCCGCCCA+TGG + chr1_2:64831723-64831742 Msa0085000:intron 60.0%
AAGAGGGTTCCATGGGCGGA+GGG - chr1_2:64831735-64831754 None:intergenic 60.0%
AGACTATTTGGGCGGGGAGG+GGG + chr1_2:64831894-64831913 Msa0085000:intron 60.0%
GGTTCCTGGGCTGCAATTGG+AGG + chr1_2:64834283-64834302 Msa0085000:three_prime_UTR 60.0%
CATGCCTCCAATTGCAGCCC+AGG - chr1_2:64834290-64834309 None:intergenic 60.0%
CTGGGCTGCAATTGGAGGCA+TGG + chr1_2:64834288-64834307 Msa0085000:three_prime_UTR 60.0%
AGGAACGCCCGCTGTCCTAA+AGG - chr1_2:64835050-64835069 None:intergenic 60.0%
GAGAATGGAGACGACGGCGG+CGG - chr1_2:64828041-64828060 None:intergenic 65.0%
CCGCCGTCGTCTCCATTCTC+AGG + chr1_2:64828041-64828060 Msa0085000:CDS 65.0%
GGAGGATCAGGGCCACCATC+TGG - chr1_2:64828548-64828567 None:intergenic 65.0%
! GATGGTGGCCCTGATCCTCC+TGG + chr1_2:64828548-64828567 Msa0085000:three_prime_UTR 65.0%
GAGAGCCGCCAGGAGGATCA+GGG - chr1_2:64828559-64828578 None:intergenic 65.0%
!! GGTGGTGGTGATGGTGGTGG+TGG + chr1_2:64828699-64828718 Msa0085000:three_prime_UTR 65.0%
!! GTGTGTGGTGGTGGTGGTGG+TGG + chr1_2:64828736-64828755 Msa0085000:intron 65.0%
!! TGTGGTGGTGGTGGTGGTGG+TGG + chr1_2:64828739-64828758 Msa0085000:intron 65.0%
TGCTCACTCACCCTGCCAGG+GGG - chr1_2:64830536-64830555 None:intergenic 65.0%
CAAGAGGGTTCCATGGGCGG+AGG - chr1_2:64831736-64831755 None:intergenic 65.0%
GGTGGCCCTGATCCTCCTGG+CGG + chr1_2:64828551-64828570 Msa0085000:three_prime_UTR 70.0%
GGAGAGCCGCCAGGAGGATC+AGG - chr1_2:64828560-64828579 None:intergenic 70.0%
!! GGTGGTGGTGGTGGTGGTGG+TGG + chr1_2:64828742-64828761 Msa0085000:intron 70.0%
!! GGTGGTGGTGGTGGTGGTGG+TGG + chr1_2:64828742-64828761 Msa0085000:intron 70.0%
GGATCGGGAGAGCCGCCAGG+AGG - chr1_2:64828566-64828585 None:intergenic 75.0%
CCTGGATCGGGAGAGCCGCC+AGG - chr1_2:64828569-64828588 None:intergenic 75.0%
CCTGGCGGCTCTCCCGATCC+AGG + chr1_2:64828566-64828585 Msa0085000:three_prime_UTR 75.0%
GGCGGCTCTCCCGATCCAGG+TGG + chr1_2:64828569-64828588 Msa0085000:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 64827966 64835297 64827966 ID=Msa0085000;Name=Msa0085000
chr1_2 mRNA 64827966 64835297 64827966 ID=Msa0085000-mRNA-1;Parent=Msa0085000;Name=Msa0085000-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.90|0.83|1|0.81|0.75|12|1766|62
chr1_2 exon 64827966 64828062 64827966 ID=Msa0085000-mRNA-1:exon:21887;Parent=Msa0085000-mRNA-1
chr1_2 exon 64828157 64828587 64828157 ID=Msa0085000-mRNA-1:exon:21888;Parent=Msa0085000-mRNA-1
chr1_2 exon 64828673 64828720 64828673 ID=Msa0085000-mRNA-1:exon:21889;Parent=Msa0085000-mRNA-1
chr1_2 exon 64828752 64828808 64828752 ID=Msa0085000-mRNA-1:exon:21890;Parent=Msa0085000-mRNA-1
chr1_2 exon 64829049 64829168 64829049 ID=Msa0085000-mRNA-1:exon:21891;Parent=Msa0085000-mRNA-1
chr1_2 exon 64829450 64829592 64829450 ID=Msa0085000-mRNA-1:exon:21892;Parent=Msa0085000-mRNA-1
chr1_2 exon 64829668 64829815 64829668 ID=Msa0085000-mRNA-1:exon:21893;Parent=Msa0085000-mRNA-1
chr1_2 exon 64829906 64829989 64829906 ID=Msa0085000-mRNA-1:exon:21894;Parent=Msa0085000-mRNA-1
chr1_2 exon 64832790 64832905 64832790 ID=Msa0085000-mRNA-1:exon:21895;Parent=Msa0085000-mRNA-1
chr1_2 exon 64833669 64833727 64833669 ID=Msa0085000-mRNA-1:exon:21896;Parent=Msa0085000-mRNA-1
chr1_2 exon 64834282 64834369 64834282 ID=Msa0085000-mRNA-1:exon:21897;Parent=Msa0085000-mRNA-1
chr1_2 exon 64834734 64835297 64834734 ID=Msa0085000-mRNA-1:exon:21898;Parent=Msa0085000-mRNA-1
chr1_2 CDS 64827966 64828062 64827966 ID=Msa0085000-mRNA-1:cds;Parent=Msa0085000-mRNA-1
chr1_2 CDS 64828157 64828248 64828157 ID=Msa0085000-mRNA-1:cds;Parent=Msa0085000-mRNA-1
chr1_2 three_prime_UTR 64828249 64828587 64828249 ID=Msa0085000-mRNA-1:three_prime_utr;Parent=Msa0085000-mRNA-1
chr1_2 three_prime_UTR 64828673 64828720 64828673 ID=Msa0085000-mRNA-1:three_prime_utr;Parent=Msa0085000-mRNA-1
chr1_2 three_prime_UTR 64828752 64828808 64828752 ID=Msa0085000-mRNA-1:three_prime_utr;Parent=Msa0085000-mRNA-1
chr1_2 three_prime_UTR 64829049 64829168 64829049 ID=Msa0085000-mRNA-1:three_prime_utr;Parent=Msa0085000-mRNA-1
chr1_2 three_prime_UTR 64829450 64829592 64829450 ID=Msa0085000-mRNA-1:three_prime_utr;Parent=Msa0085000-mRNA-1
chr1_2 three_prime_UTR 64829668 64829815 64829668 ID=Msa0085000-mRNA-1:three_prime_utr;Parent=Msa0085000-mRNA-1
chr1_2 three_prime_UTR 64829906 64829989 64829906 ID=Msa0085000-mRNA-1:three_prime_utr;Parent=Msa0085000-mRNA-1
chr1_2 three_prime_UTR 64832790 64832905 64832790 ID=Msa0085000-mRNA-1:three_prime_utr;Parent=Msa0085000-mRNA-1
chr1_2 three_prime_UTR 64833669 64833727 64833669 ID=Msa0085000-mRNA-1:three_prime_utr;Parent=Msa0085000-mRNA-1
chr1_2 three_prime_UTR 64834282 64834369 64834282 ID=Msa0085000-mRNA-1:three_prime_utr;Parent=Msa0085000-mRNA-1
chr1_2 three_prime_UTR 64834734 64835297 64834734 ID=Msa0085000-mRNA-1:three_prime_utr;Parent=Msa0085000-mRNA-1
Gene Sequence

>Msa0085000

ATGGCAAATATTAACCTCCGTGTTATTTTAGACGCCAACCTGAAAATCCATTCATTCAGTGGATTGAACAAGCCGCCGCCGTCGTCTCCATTCTCAGGTTTCCAAATTCCACTTAATTCACAGACACTCTTGTTGCTTGCTTTTCCCACTGCTTCATATTCTTCTCCTTTCCAACTTCTACAAAGCTGA
Protein sequence

>Msa0085000

MANINLRVILDANLKIHSFSGLNKPPPSSPFSGFQIPLNSQTLLLLAFPTASYSSPFQLLQS*