Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0086500 | G7KX87 | 63.484 | 419 | 130 | 12 | 8 | 416 | 27 | 432 | 6.00e-167 | 484 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0086500 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038820 | Msa0086500 | 0.834166 | 3.506514e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0086500 | MtrunA17_Chr7g0252101 | 63.484 | 419 | 130 | 12 | 8 | 416 | 27 | 432 | 1.15e-170 | 484 |
| Msa0086500 | MtrunA17_Chr3g0093911 | 68.451 | 355 | 98 | 9 | 71 | 416 | 1 | 350 | 4.54e-156 | 444 |
| Msa0086500 | MtrunA17_Chr1g0207351 | 67.042 | 355 | 100 | 9 | 75 | 416 | 16 | 366 | 1.56e-151 | 433 |
| Msa0086500 | MtrunA17_Chr4g0075971 | 57.920 | 423 | 161 | 8 | 7 | 416 | 184 | 602 | 2.93e-148 | 434 |
| Msa0086500 | MtrunA17_Chr3g0077801 | 57.507 | 353 | 136 | 6 | 71 | 413 | 1 | 349 | 1.79e-129 | 377 |
| Msa0086500 | MtrunA17_Chr6g0488101 | 49.087 | 438 | 185 | 11 | 8 | 416 | 27 | 455 | 4.77e-127 | 374 |
| Msa0086500 | MtrunA17_Chr6g0488271 | 49.764 | 424 | 176 | 10 | 21 | 416 | 1 | 415 | 1.44e-126 | 372 |
| Msa0086500 | MtrunA17_Chr3g0077901 | 56.022 | 357 | 147 | 5 | 67 | 415 | 17 | 371 | 4.35e-124 | 363 |
| Msa0086500 | MtrunA17_Chr3g0077851 | 56.677 | 337 | 136 | 5 | 87 | 415 | 1 | 335 | 7.53e-118 | 347 |
| Msa0086500 | MtrunA17_Chr1g0209051 | 66.418 | 268 | 81 | 5 | 156 | 415 | 4 | 270 | 4.17e-117 | 342 |
| Msa0086500 | MtrunA17_Chr7g0243331 | 55.747 | 348 | 144 | 7 | 76 | 416 | 6 | 350 | 1.90e-113 | 336 |
| Msa0086500 | MtrunA17_Chr3g0112311 | 53.333 | 360 | 147 | 8 | 71 | 414 | 1 | 355 | 5.25e-111 | 330 |
| Msa0086500 | MtrunA17_Chr6g0452641 | 50.157 | 319 | 135 | 6 | 116 | 416 | 28 | 340 | 3.49e-85 | 263 |
| Msa0086500 | MtrunA17_Chr3g0122991 | 46.462 | 325 | 108 | 6 | 73 | 383 | 2 | 274 | 3.37e-82 | 253 |
| Msa0086500 | MtrunA17_Chr3g0123471 | 52.453 | 265 | 110 | 7 | 153 | 408 | 2 | 259 | 1.05e-77 | 241 |
| Msa0086500 | MtrunA17_Chr1g0202841 | 66.111 | 180 | 50 | 6 | 247 | 416 | 1 | 179 | 2.69e-69 | 217 |
| Msa0086500 | MtrunA17_Chr7g0243391 | 48.148 | 216 | 108 | 3 | 67 | 282 | 14 | 225 | 3.94e-55 | 182 |
| Msa0086500 | MtrunA17_Chr4g0075861 | 55.208 | 192 | 78 | 3 | 7 | 192 | 184 | 373 | 9.03e-53 | 180 |
| Msa0086500 | MtrunA17_Chr1g0196231 | 64.865 | 148 | 46 | 4 | 68 | 214 | 224 | 366 | 1.42e-49 | 172 |
| Msa0086500 | MtrunA17_Chr1g0187941 | 62.222 | 135 | 44 | 3 | 250 | 377 | 3 | 137 | 3.09e-45 | 153 |
| Msa0086500 | MtrunA17_Chr6g0486591 | 51.875 | 160 | 58 | 5 | 275 | 416 | 1 | 159 | 4.17e-42 | 145 |
| Msa0086500 | MtrunA17_Chr1g0206951 | 58.400 | 125 | 50 | 2 | 74 | 197 | 2 | 125 | 1.54e-39 | 138 |
| Msa0086500 | MtrunA17_Chr1g0209191 | 67.347 | 98 | 22 | 2 | 328 | 415 | 1 | 98 | 6.05e-37 | 130 |
| Msa0086500 | MtrunA17_Chr1g0196241 | 73.864 | 88 | 19 | 2 | 317 | 400 | 1 | 88 | 1.05e-34 | 124 |
| Msa0086500 | MtrunA17_Chr6g0459061 | 27.003 | 337 | 216 | 10 | 79 | 401 | 18 | 338 | 1.38e-26 | 109 |
| Msa0086500 | MtrunA17_Chr1g0209061 | 58.333 | 96 | 22 | 3 | 15 | 110 | 30 | 107 | 1.08e-25 | 100 |
| Msa0086500 | MtrunA17_Chr7g0238781 | 40.741 | 135 | 77 | 2 | 103 | 237 | 27 | 158 | 1.03e-23 | 96.7 |
| Msa0086500 | MtrunA17_Chr1g0206781 | 53.571 | 56 | 26 | 0 | 7 | 62 | 23 | 78 | 3.31e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 89 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTCTTTATTCTTGTAAA+TGG | 0.131332 | 1_2:-67227299 | None:intergenic |
| TCCTACTCCTGTCAAATTAT+TGG | 0.135605 | 1_2:-67228056 | None:intergenic |
| TATGAAATTTGAAGAATTAA+TGG | 0.141021 | 1_2:-67227119 | None:intergenic |
| CTCTCATATCCCCACCTATT+TGG | 0.159328 | 1_2:-67227812 | None:intergenic |
| CTGCCTCGTCATGGTAGTTC+TGG | 0.199501 | 1_2:-67225484 | None:intergenic |
| CCTTTATGTAGTGTTTATTC+AGG | 0.216363 | 1_2:+67227860 | Msa0086500:CDS |
| TTTGAAGAATTAATGGTTCT+TGG | 0.256322 | 1_2:-67227112 | None:intergenic |
| CAAATTATTGGCAAACAAAA+AGG | 0.284650 | 1_2:-67228044 | None:intergenic |
| CTCCAGTTTGACATAATTCA+TGG | 0.299341 | 1_2:-67227729 | None:intergenic |
| TCTCATATCCCCACCTATTT+GGG | 0.303333 | 1_2:-67227811 | None:intergenic |
| GAAGCCGAGTCTTATCATTA+TGG | 0.307560 | 1_2:+67227341 | Msa0086500:CDS |
| ATGCATTGAGCAACCCAAAT+AGG | 0.308917 | 1_2:+67227798 | Msa0086500:CDS |
| TGGATTACTTATTCGTCAAT+AGG | 0.317482 | 1_2:+67227470 | Msa0086500:CDS |
| GGTCGACAAAATCTAGTGTT+TGG | 0.335860 | 1_2:-67227016 | None:intergenic |
| CCTAAGGGAAAATGTTTCAT+TGG | 0.345717 | 1_2:-67227624 | None:intergenic |
| GGGGAGGGTGGTTGACTTTG+TGG | 0.347817 | 1_2:+67227502 | Msa0086500:CDS |
| ACTTTACTGGAGAAATTTCT+TGG | 0.348229 | 1_2:+67227085 | Msa0086500:CDS |
| TTGAAGAATTAATGGTTCTT+GGG | 0.369399 | 1_2:-67227111 | None:intergenic |
| AACCATGAATTATGTCAAAC+TGG | 0.388496 | 1_2:+67227727 | Msa0086500:CDS |
| TGCCTCGTCATGGTAGTTCT+GGG | 0.393485 | 1_2:-67225483 | None:intergenic |
| AGAGAACCGTGAACTTCCTT+TGG | 0.394473 | 1_2:+67226974 | Msa0086500:CDS |
| ATTTAAGGTTCGACGAAGTA+AGG | 0.397434 | 1_2:+67227681 | Msa0086500:CDS |
| AGTTTGATTTGATGTTCCTT+TGG | 0.399942 | 1_2:-67225641 | None:intergenic |
| CAAGTTCCTTCATGTTGGAT+TGG | 0.401543 | 1_2:+67227930 | Msa0086500:CDS |
| TTATGTCAAACTGGAGACTT+TGG | 0.403683 | 1_2:+67227736 | Msa0086500:CDS |
| ACACACCGGCAAATTGAAAA+AGG | 0.404330 | 1_2:-67227037 | None:intergenic |
| CTCTGAGGAATTTATCTTGG+TGG | 0.409746 | 1_2:+67227394 | Msa0086500:CDS |
| GTTGTGATCTAAAGGGAAAA+AGG | 0.417556 | 1_2:+67226938 | Msa0086500:intron |
| TTGCCGGTGTGTGCAAGAAT+TGG | 0.418875 | 1_2:+67227048 | Msa0086500:CDS |
| TTCGTCAATAGGAAATGAAC+GGG | 0.420738 | 1_2:+67227481 | Msa0086500:CDS |
| ATGCTCTGAGGAATTTATCT+TGG | 0.430555 | 1_2:+67227391 | Msa0086500:CDS |
| CTAAGGGAAAATGTTTCATT+GGG | 0.435162 | 1_2:-67227623 | None:intergenic |
| CCTGAATAAACACTACATAA+AGG | 0.437679 | 1_2:-67227860 | None:intergenic |
| GTCGACAAAATCTAGTGTTT+GGG | 0.443544 | 1_2:-67227015 | None:intergenic |
| TGATTTGATGTTCCTTTGGC+AGG | 0.443659 | 1_2:-67225637 | None:intergenic |
| TTGTTTGCCAATAATTTGAC+AGG | 0.461977 | 1_2:+67228049 | Msa0086500:three_prime_UTR |
| AAGGAACTTGCTCCTTGAGT+TGG | 0.466623 | 1_2:-67227917 | None:intergenic |
| ATGATAAGACTCGGCTTCAA+AGG | 0.473874 | 1_2:-67227336 | None:intergenic |
| CATCACAATTAACTAACCTA+AGG | 0.476886 | 1_2:-67227640 | None:intergenic |
| GAGTACCCCTATGTTGGCCT+TGG | 0.476948 | 1_2:-67227555 | None:intergenic |
| TATGTCAAACTGGAGACTTT+GGG | 0.481376 | 1_2:+67227737 | Msa0086500:CDS |
| CTTTATGTAGTGTTTATTCA+GGG | 0.488519 | 1_2:+67227861 | Msa0086500:CDS |
| TGATAAGACTCGGCTTCAAA+GGG | 0.489177 | 1_2:-67227335 | None:intergenic |
| TCCATTTACAAGAATAAAGA+AGG | 0.500617 | 1_2:+67227298 | Msa0086500:CDS |
| ATCAATCTCGAAATTGTGGT+TGG | 0.504810 | 1_2:+67227450 | Msa0086500:CDS |
| AGGAGCAAGTTCCTTCATGT+TGG | 0.509044 | 1_2:+67227925 | Msa0086500:CDS |
| AGAGTCAAGGAGCTGCTTGA+AGG | 0.509677 | 1_2:+67225581 | Msa0086500:CDS |
| TTGGTCGGGTAGGCTAATCA+AGG | 0.512881 | 1_2:-67227162 | None:intergenic |
| GCCAATAATTTGACAGGAGT+AGG | 0.513461 | 1_2:+67228055 | Msa0086500:three_prime_UTR |
| GAGCAACTCTATGTATGCAC+TGG | 0.514243 | 1_2:+67227832 | Msa0086500:CDS |
| GTCTATCAATCTCGAAATTG+TGG | 0.522717 | 1_2:+67227446 | Msa0086500:CDS |
| TTGATTACGCTTCCAACTCA+AGG | 0.533033 | 1_2:+67227905 | Msa0086500:CDS |
| AGGTGCTGCGGCAAGAGTCA+AGG | 0.534822 | 1_2:+67225568 | Msa0086500:CDS |
| TTGATGTTCCTTTGGCAGGA+AGG | 0.538933 | 1_2:-67225633 | None:intergenic |
| GAGTCAAGGAGCTGCTTGAA+GGG | 0.541631 | 1_2:+67225582 | Msa0086500:CDS |
| AAAAGTCCTAAAAGATGTGA+AGG | 0.543573 | 1_2:+67225526 | Msa0086500:CDS |
| GTCACTACCAAGGCCAACAT+AGG | 0.547612 | 1_2:+67227548 | Msa0086500:CDS |
| TCACTACCAAGGCCAACATA+GGG | 0.550648 | 1_2:+67227549 | Msa0086500:CDS |
| CGAGGCAGTACAAGCTAATG+AGG | 0.552124 | 1_2:+67225499 | Msa0086500:CDS |
| GCACATCCAAAGGAAGTTCA+CGG | 0.562215 | 1_2:-67226980 | None:intergenic |
| GCCTCGTCATGGTAGTTCTG+GGG | 0.562928 | 1_2:-67225482 | None:intergenic |
| TTGCAACACTATGTTACTTG+TGG | 0.567630 | 1_2:+67228002 | Msa0086500:three_prime_UTR |
| CAAATCAAACTTGAGACCAC+TGG | 0.570634 | 1_2:+67225653 | Msa0086500:CDS |
| CAAGCTGAGTACCCCTATGT+TGG | 0.578511 | 1_2:-67227561 | None:intergenic |
| GCATTTGTCAAAAGCAAGCA+AGG | 0.584204 | 1_2:-67227372 | None:intergenic |
| TTTATGTAGTGTTTATTCAG+GGG | 0.586406 | 1_2:+67227862 | Msa0086500:CDS |
| CATTGAGCAACCCAAATAGG+TGG | 0.598653 | 1_2:+67227801 | Msa0086500:CDS |
| AAAACACCAATCCAACATGA+AGG | 0.599108 | 1_2:-67227936 | None:intergenic |
| ATCACAATTAACTAACCTAA+GGG | 0.600746 | 1_2:-67227639 | None:intergenic |
| ATTCGTCAATAGGAAATGAA+CGG | 0.603412 | 1_2:+67227480 | Msa0086500:CDS |
| GGAGTAGGAAAAGCTTGCAA+TGG | 0.606769 | 1_2:+67228070 | Msa0086500:three_prime_UTR |
| CCTCGTCATGGTAGTTCTGG+GGG | 0.607116 | 1_2:-67225481 | None:intergenic |
| ATGATATCAAGCACATCCAA+AGG | 0.608076 | 1_2:-67226990 | None:intergenic |
| ATTCAATACCTTCCTGCCAA+AGG | 0.612236 | 1_2:+67225625 | Msa0086500:CDS |
| ATTGAGCAACCCAAATAGGT+GGG | 0.612873 | 1_2:+67227802 | Msa0086500:CDS |
| GATCAAAGAATTTATACAAG+AGG | 0.613874 | 1_2:+67225548 | Msa0086500:CDS |
| TAGCTTGTACTGCCTCGTCA+TGG | 0.617598 | 1_2:-67225493 | None:intergenic |
| CGGTGTGTGCAAGAATTGGA+AGG | 0.623153 | 1_2:+67227052 | Msa0086500:CDS |
| CTTCCAATTCTTGCACACAC+CGG | 0.626272 | 1_2:-67227051 | None:intergenic |
| AATTTATACAAGAGGTGCTG+CGG | 0.636068 | 1_2:+67225556 | Msa0086500:CDS |
| AGCAACTCTATGTATGCACT+GGG | 0.636113 | 1_2:+67227833 | Msa0086500:CDS |
| ATCTATGCTACATCTTCTAG+CGG | 0.636928 | 1_2:+67227230 | Msa0086500:CDS |
| AATATATGTTGTCACTACCA+AGG | 0.650134 | 1_2:+67227538 | Msa0086500:CDS |
| CACTACCAAGGCCAACATAG+GGG | 0.661007 | 1_2:+67227550 | Msa0086500:CDS |
| TTGAGCAACCCAAATAGGTG+GGG | 0.691982 | 1_2:+67227803 | Msa0086500:CDS |
| ATTACCATAATGATAAGACT+CGG | 0.708713 | 1_2:-67227345 | None:intergenic |
| GATAAGACTCGGCTTCAAAG+GGG | 0.717149 | 1_2:-67227334 | None:intergenic |
| TCGTCAATAGGAAATGAACG+GGG | 0.727167 | 1_2:+67227482 | Msa0086500:CDS |
| CGTCAATAGGAAATGAACGG+GGG | 0.729159 | 1_2:+67227483 | Msa0086500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTCAGAAATAAATAAAA+AGG | + | chr1_2:67226883-67226902 | Msa0086500:intron | 10.0% |
| !!! | TATATATAGATTACTTTTTC+CGG | - | chr1_2:67226128-67226147 | None:intergenic | 15.0% |
| !!! | TGAAAAACTATATTTTAATG+TGG | + | chr1_2:67226199-67226218 | Msa0086500:intron | 15.0% |
| !!! | TTATCATTTTTCTTTTTGTT+GGG | + | chr1_2:67226597-67226616 | Msa0086500:intron | 15.0% |
| !!! | AACTTAAAGCATTAAATATT+AGG | - | chr1_2:67226648-67226667 | None:intergenic | 15.0% |
| !! | TATGAAATTTGAAGAATTAA+TGG | - | chr1_2:67227122-67227141 | None:intergenic | 15.0% |
| !! | TCAAAATAGTCTCTAAATTA+GGG | - | chr1_2:67225762-67225781 | None:intergenic | 20.0% |
| !! | ATCAAAATAGTCTCTAAATT+AGG | - | chr1_2:67225763-67225782 | None:intergenic | 20.0% |
| !!! | AGTTTTGCACAATTAATTTA+TGG | + | chr1_2:67225785-67225804 | Msa0086500:intron | 20.0% |
| !!! | TTTTTCATGTAATCAATTGA+TGG | + | chr1_2:67225842-67225861 | Msa0086500:intron | 20.0% |
| !!! | TTTTCATGTAATCAATTGAT+GGG | + | chr1_2:67225843-67225862 | Msa0086500:intron | 20.0% |
| !! | CAACAAAAAGAAAAATGATA+AGG | - | chr1_2:67226598-67226617 | None:intergenic | 20.0% |
| !!! | CTTATCATTTTTCTTTTTGT+TGG | + | chr1_2:67226596-67226615 | Msa0086500:intron | 20.0% |
| !!! | TATCATTTTTCTTTTTGTTG+GGG | + | chr1_2:67226598-67226617 | Msa0086500:intron | 20.0% |
| !! | TTCACATGAAGAAAAAAAAA+AGG | + | chr1_2:67226745-67226764 | Msa0086500:intron | 20.0% |
| !! | TGATAATATCATAGAAAATG+AGG | - | chr1_2:67226845-67226864 | None:intergenic | 20.0% |
| !!! | TCAAGCAATAATAAACTTTT+TGG | - | chr1_2:67227184-67227203 | None:intergenic | 20.0% |
| !!! | CAATTTTAGACAAAGTATTA+AGG | + | chr1_2:67228103-67228122 | Msa0086500:three_prime_UTR | 20.0% |
| ! | GATCAAAGAATTTATACAAG+AGG | + | chr1_2:67225548-67225567 | Msa0086500:CDS | 25.0% |
| ! | AATGATAAATTACTAACCAG+TGG | - | chr1_2:67225672-67225691 | None:intergenic | 25.0% |
| ! | AACATAAGTCAAGATAACAA+GGG | - | chr1_2:67226026-67226045 | None:intergenic | 25.0% |
| ! | AAACATAAGTCAAGATAACA+AGG | - | chr1_2:67226027-67226046 | None:intergenic | 25.0% |
| !! | AAAGCATTAAATATTAGGCA+TGG | - | chr1_2:67226643-67226662 | None:intergenic | 25.0% |
| !!! | TGTTTGCTATACATTGAAAA+TGG | + | chr1_2:67226710-67226729 | Msa0086500:intron | 25.0% |
| !!! | GTTTGCTATACATTGAAAAT+GGG | + | chr1_2:67226711-67226730 | Msa0086500:intron | 25.0% |
| ! | TATACATTGAAAATGGGAAA+AGG | + | chr1_2:67226717-67226736 | Msa0086500:intron | 25.0% |
| ! | ATCACAACAATGACAAAATT+AGG | - | chr1_2:67226926-67226945 | None:intergenic | 25.0% |
| ! | TTGAAGAATTAATGGTTCTT+GGG | - | chr1_2:67227114-67227133 | None:intergenic | 25.0% |
| ! | TTTGAAGAATTAATGGTTCT+TGG | - | chr1_2:67227115-67227134 | None:intergenic | 25.0% |
| !!! | CAATAATAAACTTTTTGGTC+GGG | - | chr1_2:67227179-67227198 | None:intergenic | 25.0% |
| !!! | GCAATAATAAACTTTTTGGT+CGG | - | chr1_2:67227180-67227199 | None:intergenic | 25.0% |
| ! | TCCATTTACAAGAATAAAGA+AGG | + | chr1_2:67227298-67227317 | Msa0086500:CDS | 25.0% |
| ! | ACCTTCTTTATTCTTGTAAA+TGG | - | chr1_2:67227302-67227321 | None:intergenic | 25.0% |
| ! | ATTACCATAATGATAAGACT+CGG | - | chr1_2:67227348-67227367 | None:intergenic | 25.0% |
| ! | ATCACAATTAACTAACCTAA+GGG | - | chr1_2:67227642-67227661 | None:intergenic | 25.0% |
| !!! | AACTTTTAGTGGTTGATTTA+AGG | + | chr1_2:67227666-67227685 | Msa0086500:CDS | 25.0% |
| !!! | CATTGCATTATTTTATGCTT+TGG | + | chr1_2:67227763-67227782 | Msa0086500:CDS | 25.0% |
| ! | CTTTATGTAGTGTTTATTCA+GGG | + | chr1_2:67227861-67227880 | Msa0086500:CDS | 25.0% |
| ! | TTTATGTAGTGTTTATTCAG+GGG | + | chr1_2:67227862-67227881 | Msa0086500:CDS | 25.0% |
| !! | TTTTAGACATCTACAATATG+AGG | + | chr1_2:67227955-67227974 | Msa0086500:CDS | 25.0% |
| ! | CAAATTATTGGCAAACAAAA+AGG | - | chr1_2:67228047-67228066 | None:intergenic | 25.0% |
| !!! | GAACGATTTTTTGTTTGTTT+TGG | + | chr1_2:67228131-67228150 | Msa0086500:three_prime_UTR | 25.0% |
| !!! | TTTTGTTTGTTTTGGAAACA+AGG | + | chr1_2:67228139-67228158 | Msa0086500:three_prime_UTR | 25.0% |
| AAAAGTCCTAAAAGATGTGA+AGG | + | chr1_2:67225526-67225545 | Msa0086500:CDS | 30.0% | |
| ! | TTTGATCCTTCACATCTTTT+AGG | - | chr1_2:67225535-67225554 | None:intergenic | 30.0% |
| !! | AGTTTGATTTGATGTTCCTT+TGG | - | chr1_2:67225644-67225663 | None:intergenic | 30.0% |
| !! | ATGTAATCAATTGATGGGTT+TGG | + | chr1_2:67225848-67225867 | Msa0086500:intron | 30.0% |
| ATTAAGCTCAATGAAATCCT+AGG | - | chr1_2:67226403-67226422 | None:intergenic | 30.0% | |
| GAAAAAAAAATCAAGCACAG+CGG | - | chr1_2:67226442-67226461 | None:intergenic | 30.0% | |
| !!! | TTTTTTTCTCAGACGATTGT+AGG | + | chr1_2:67226516-67226535 | Msa0086500:intron | 30.0% |
| !!! | TTTTTTCTCAGACGATTGTA+GGG | + | chr1_2:67226517-67226536 | Msa0086500:intron | 30.0% |
| ATGATAAGGATTAAAGACGT+AGG | - | chr1_2:67226584-67226603 | None:intergenic | 30.0% | |
| !!! | TTAGAGTGTTATTTTCCATG+AGG | + | chr1_2:67226666-67226685 | Msa0086500:intron | 30.0% |
| ! | GATATCTATTTTCATCCTCA+TGG | - | chr1_2:67226684-67226703 | None:intergenic | 30.0% |
| AGATGTTTGTTTGGCAAAAA+TGG | + | chr1_2:67226798-67226817 | Msa0086500:intron | 30.0% | |
| TTGTCATTGTTGTGATCTAA+AGG | + | chr1_2:67226930-67226949 | Msa0086500:intron | 30.0% | |
| TGTCATTGTTGTGATCTAAA+GGG | + | chr1_2:67226931-67226950 | Msa0086500:intron | 30.0% | |
| ACTTTACTGGAGAAATTTCT+TGG | + | chr1_2:67227085-67227104 | Msa0086500:CDS | 30.0% | |
| !! | TTCTAGCGGATATTTTATCA+TGG | + | chr1_2:67227244-67227263 | Msa0086500:CDS | 30.0% |
| TGGATTACTTATTCGTCAAT+AGG | + | chr1_2:67227470-67227489 | Msa0086500:CDS | 30.0% | |
| ATTCGTCAATAGGAAATGAA+CGG | + | chr1_2:67227480-67227499 | Msa0086500:CDS | 30.0% | |
| AATATATGTTGTCACTACCA+AGG | + | chr1_2:67227538-67227557 | Msa0086500:CDS | 30.0% | |
| CTAAGGGAAAATGTTTCATT+GGG | - | chr1_2:67227626-67227645 | None:intergenic | 30.0% | |
| CATCACAATTAACTAACCTA+AGG | - | chr1_2:67227643-67227662 | None:intergenic | 30.0% | |
| AACCATGAATTATGTCAAAC+TGG | + | chr1_2:67227727-67227746 | Msa0086500:CDS | 30.0% | |
| CCTGAATAAACACTACATAA+AGG | - | chr1_2:67227863-67227882 | None:intergenic | 30.0% | |
| CCTTTATGTAGTGTTTATTC+AGG | + | chr1_2:67227860-67227879 | Msa0086500:CDS | 30.0% | |
| TTGGCAAACAAAAAGGAAAT+AGG | - | chr1_2:67228040-67228059 | None:intergenic | 30.0% | |
| TTGTTTGCCAATAATTTGAC+AGG | + | chr1_2:67228049-67228068 | Msa0086500:three_prime_UTR | 30.0% | |
| !! | AATTTATACAAGAGGTGCTG+CGG | + | chr1_2:67225556-67225575 | Msa0086500:CDS | 35.0% |
| AGTCTCTAAATTAGGGCATA+TGG | - | chr1_2:67225755-67225774 | None:intergenic | 35.0% | |
| ! | TGGGTTTGGAGTATTATAAC+AGG | + | chr1_2:67225862-67225881 | Msa0086500:intron | 35.0% |
| ! | GGGTTTGGAGTATTATAACA+GGG | + | chr1_2:67225863-67225882 | Msa0086500:intron | 35.0% |
| ! | GGTTTGGAGTATTATAACAG+GGG | + | chr1_2:67225864-67225883 | Msa0086500:intron | 35.0% |
| GAGTATTATAACAGGGGTTA+GGG | + | chr1_2:67225870-67225889 | Msa0086500:intron | 35.0% | |
| AGTATTATAACAGGGGTTAG+GGG | + | chr1_2:67225871-67225890 | Msa0086500:intron | 35.0% | |
| ! | TAGGGGTTCATGCAATTTTA+TGG | + | chr1_2:67225888-67225907 | Msa0086500:intron | 35.0% |
| AAATAGAGTCCTAGATAGTG+TGG | - | chr1_2:67226061-67226080 | None:intergenic | 35.0% | |
| ! | ATTTTGTCGCTCTATTTAGC+CGG | + | chr1_2:67226106-67226125 | Msa0086500:intron | 35.0% |
| ACTACTACAGTTGCAATCAA+CGG | - | chr1_2:67226172-67226191 | None:intergenic | 35.0% | |
| CTGAAGAACACACTAATTGT+TGG | - | chr1_2:67226334-67226353 | None:intergenic | 35.0% | |
| GTGTTCTTCAGTAACAAAAG+TGG | + | chr1_2:67226343-67226362 | Msa0086500:intron | 35.0% | |
| TCAGTAACAAAAGTGGAAAG+TGG | + | chr1_2:67226350-67226369 | Msa0086500:intron | 35.0% | |
| AACAAAAGTGGAAAGTGGAA+AGG | + | chr1_2:67226355-67226374 | Msa0086500:intron | 35.0% | |
| ! | CTATTAGTTCTTCACTACCT+AGG | + | chr1_2:67226383-67226402 | Msa0086500:intron | 35.0% |
| ! | TTTTTCTCAGACGATTGTAG+GGG | + | chr1_2:67226518-67226537 | Msa0086500:intron | 35.0% |
| TAGGAAACTGTCAATTAGTG+AGG | - | chr1_2:67226565-67226584 | None:intergenic | 35.0% | |
| ! | TTTTCTTTTTGTTGGGGAGT+AGG | + | chr1_2:67226604-67226623 | Msa0086500:intron | 35.0% |
| ! | TTTCTTTTTGTTGGGGAGTA+GGG | + | chr1_2:67226605-67226624 | Msa0086500:intron | 35.0% |
| ! | TGCTGTTCTAGATGTTTGTT+TGG | + | chr1_2:67226789-67226808 | Msa0086500:intron | 35.0% |
| GTTGTGATCTAAAGGGAAAA+AGG | + | chr1_2:67226938-67226957 | Msa0086500:intron | 35.0% | |
| TAAAGGGAAAAAGGTGAAGA+AGG | + | chr1_2:67226947-67226966 | Msa0086500:intron | 35.0% | |
| ATGATATCAAGCACATCCAA+AGG | - | chr1_2:67226993-67227012 | None:intergenic | 35.0% | |
| GTCGACAAAATCTAGTGTTT+GGG | - | chr1_2:67227018-67227037 | None:intergenic | 35.0% | |
| !! | AATAAACTTTTTGGTCGGGT+AGG | - | chr1_2:67227175-67227194 | None:intergenic | 35.0% |
| ATCTATGCTACATCTTCTAG+CGG | + | chr1_2:67227230-67227249 | Msa0086500:CDS | 35.0% | |
| !! | TAGCGGATATTTTATCATGG+TGG | + | chr1_2:67227247-67227266 | Msa0086500:CDS | 35.0% |
| ! | AGCGGATATTTTATCATGGT+GGG | + | chr1_2:67227248-67227267 | Msa0086500:CDS | 35.0% |
| !! | ATGCTCTGAGGAATTTATCT+TGG | + | chr1_2:67227391-67227410 | Msa0086500:CDS | 35.0% |
| !!! | TGGTTTTTTGCTGCTATCTT+TGG | + | chr1_2:67227414-67227433 | Msa0086500:CDS | 35.0% |
| GTCTATCAATCTCGAAATTG+TGG | + | chr1_2:67227446-67227465 | Msa0086500:CDS | 35.0% | |
| ATCAATCTCGAAATTGTGGT+TGG | + | chr1_2:67227450-67227469 | Msa0086500:CDS | 35.0% | |
| TTCGTCAATAGGAAATGAAC+GGG | + | chr1_2:67227481-67227500 | Msa0086500:CDS | 35.0% | |
| CCTAAGGGAAAATGTTTCAT+TGG | - | chr1_2:67227627-67227646 | None:intergenic | 35.0% | |
| ! | CCAATGAAACATTTTCCCTT+AGG | + | chr1_2:67227624-67227643 | Msa0086500:CDS | 35.0% |
| ! | TTGTGATGAGCAACTTTTAG+TGG | + | chr1_2:67227655-67227674 | Msa0086500:CDS | 35.0% |
| ! | ATTTAAGGTTCGACGAAGTA+AGG | + | chr1_2:67227681-67227700 | Msa0086500:CDS | 35.0% |
| CTCCAGTTTGACATAATTCA+TGG | - | chr1_2:67227732-67227751 | None:intergenic | 35.0% | |
| TTATGTCAAACTGGAGACTT+TGG | + | chr1_2:67227736-67227755 | Msa0086500:CDS | 35.0% | |
| TATGTCAAACTGGAGACTTT+GGG | + | chr1_2:67227737-67227756 | Msa0086500:CDS | 35.0% | |
| AAAACACCAATCCAACATGA+AGG | - | chr1_2:67227939-67227958 | None:intergenic | 35.0% | |
| ! | TTGCAACACTATGTTACTTG+TGG | + | chr1_2:67228002-67228021 | Msa0086500:three_prime_UTR | 35.0% |
| TCCTACTCCTGTCAAATTAT+TGG | - | chr1_2:67228059-67228078 | None:intergenic | 35.0% | |
| ATTCAATACCTTCCTGCCAA+AGG | + | chr1_2:67225625-67225644 | Msa0086500:CDS | 40.0% | |
| TGATTTGATGTTCCTTTGGC+AGG | - | chr1_2:67225640-67225659 | None:intergenic | 40.0% | |
| CAAATCAAACTTGAGACCAC+TGG | + | chr1_2:67225653-67225672 | Msa0086500:CDS | 40.0% | |
| ! | ATGGATTAAGTTGCGACACT+CGG | + | chr1_2:67225804-67225823 | Msa0086500:intron | 40.0% |
| ! | GGAGTATTATAACAGGGGTT+AGG | + | chr1_2:67225869-67225888 | Msa0086500:intron | 40.0% |
| TAATTCTTCCCGAGCATCTA+TGG | + | chr1_2:67225962-67225981 | Msa0086500:intron | 40.0% | |
| AATTCTTCCCGAGCATCTAT+GGG | + | chr1_2:67225963-67225982 | Msa0086500:intron | 40.0% | |
| ATTACATCCCCATAGATGCT+CGG | - | chr1_2:67225974-67225993 | None:intergenic | 40.0% | |
| AGCATCTATGGGGATGTAAT+TGG | + | chr1_2:67225974-67225993 | Msa0086500:intron | 40.0% | |
| AAGTCAAGATAACAAGGGCT+GGG | - | chr1_2:67226021-67226040 | None:intergenic | 40.0% | |
| TAAGTCAAGATAACAAGGGC+TGG | - | chr1_2:67226022-67226041 | None:intergenic | 40.0% | |
| GTTTACTGTCCACACTATCT+AGG | + | chr1_2:67226049-67226068 | Msa0086500:intron | 40.0% | |
| AACGTCATGACTGTTTGTGA+TGG | + | chr1_2:67226241-67226260 | Msa0086500:intron | 40.0% | |
| ! | TTGTGATGGAAAAGAACACG+AGG | + | chr1_2:67226255-67226274 | Msa0086500:intron | 40.0% |
| ! | TTCTTTTTGTTGGGGAGTAG+GGG | + | chr1_2:67226606-67226625 | Msa0086500:intron | 40.0% |
| GGTCGACAAAATCTAGTGTT+TGG | - | chr1_2:67227019-67227038 | None:intergenic | 40.0% | |
| !!! | GTCGACCTTTTTCAATTTGC+CGG | + | chr1_2:67227032-67227051 | Msa0086500:CDS | 40.0% |
| ACACACCGGCAAATTGAAAA+AGG | - | chr1_2:67227040-67227059 | None:intergenic | 40.0% | |
| ! | AGGCTTTTCAGACACTTTAC+TGG | + | chr1_2:67227072-67227091 | Msa0086500:CDS | 40.0% |
| ! | GCGGATATTTTATCATGGTG+GGG | + | chr1_2:67227249-67227268 | Msa0086500:CDS | 40.0% |
| TGATAAGACTCGGCTTCAAA+GGG | - | chr1_2:67227338-67227357 | None:intergenic | 40.0% | |
| ATGATAAGACTCGGCTTCAA+AGG | - | chr1_2:67227339-67227358 | None:intergenic | 40.0% | |
| ! | GAAGCCGAGTCTTATCATTA+TGG | + | chr1_2:67227341-67227360 | Msa0086500:CDS | 40.0% |
| GCATTTGTCAAAAGCAAGCA+AGG | - | chr1_2:67227375-67227394 | None:intergenic | 40.0% | |
| ! | TGCTTTTGACAAATGCTCTG+AGG | + | chr1_2:67227379-67227398 | Msa0086500:CDS | 40.0% |
| ! | CTCTGAGGAATTTATCTTGG+TGG | + | chr1_2:67227394-67227413 | Msa0086500:CDS | 40.0% |
| TCGTCAATAGGAAATGAACG+GGG | + | chr1_2:67227482-67227501 | Msa0086500:CDS | 40.0% | |
| ATGCATTGAGCAACCCAAAT+AGG | + | chr1_2:67227798-67227817 | Msa0086500:CDS | 40.0% | |
| ATTGAGCAACCCAAATAGGT+GGG | + | chr1_2:67227802-67227821 | Msa0086500:CDS | 40.0% | |
| TCTCATATCCCCACCTATTT+GGG | - | chr1_2:67227814-67227833 | None:intergenic | 40.0% | |
| AGCAACTCTATGTATGCACT+GGG | + | chr1_2:67227833-67227852 | Msa0086500:CDS | 40.0% | |
| TTGATTACGCTTCCAACTCA+AGG | + | chr1_2:67227905-67227924 | Msa0086500:CDS | 40.0% | |
| CAAGTTCCTTCATGTTGGAT+TGG | + | chr1_2:67227930-67227949 | Msa0086500:CDS | 40.0% | |
| GCCAATAATTTGACAGGAGT+AGG | + | chr1_2:67228055-67228074 | Msa0086500:three_prime_UTR | 40.0% | |
| TTGATGTTCCTTTGGCAGGA+AGG | - | chr1_2:67225636-67225655 | None:intergenic | 45.0% | |
| ATTCTTCCCGAGCATCTATG+GGG | + | chr1_2:67225964-67225983 | Msa0086500:intron | 45.0% | |
| TTACATCCCCATAGATGCTC+GGG | - | chr1_2:67225973-67225992 | None:intergenic | 45.0% | |
| AGTCAAGATAACAAGGGCTG+GGG | - | chr1_2:67226020-67226039 | None:intergenic | 45.0% | |
| GGAAAACTTTCTGACTGCAG+AGG | - | chr1_2:67226151-67226170 | None:intergenic | 45.0% | |
| GACGCTTTGACACTCTCTTA+TGG | - | chr1_2:67226476-67226495 | None:intergenic | 45.0% | |
| ACGATTGTAGGGGAATTGCA+TGG | + | chr1_2:67226528-67226547 | Msa0086500:intron | 45.0% | |
| GTAGGGGAATTGCATGGAAA+TGG | + | chr1_2:67226534-67226553 | Msa0086500:intron | 45.0% | |
| AGAGAACCGTGAACTTCCTT+TGG | + | chr1_2:67226974-67226993 | Msa0086500:CDS | 45.0% | |
| GCACATCCAAAGGAAGTTCA+CGG | - | chr1_2:67226983-67227002 | None:intergenic | 45.0% | |
| CTTCCAATTCTTGCACACAC+CGG | - | chr1_2:67227054-67227073 | None:intergenic | 45.0% | |
| GATAAGACTCGGCTTCAAAG+GGG | - | chr1_2:67227337-67227356 | None:intergenic | 45.0% | |
| CGTCAATAGGAAATGAACGG+GGG | + | chr1_2:67227483-67227502 | Msa0086500:CDS | 45.0% | |
| AATAGGAAATGAACGGGGGA+GGG | + | chr1_2:67227487-67227506 | Msa0086500:CDS | 45.0% | |
| TCACTACCAAGGCCAACATA+GGG | + | chr1_2:67227549-67227568 | Msa0086500:CDS | 45.0% | |
| CATTGAGCAACCCAAATAGG+TGG | + | chr1_2:67227801-67227820 | Msa0086500:CDS | 45.0% | |
| TTGAGCAACCCAAATAGGTG+GGG | + | chr1_2:67227803-67227822 | Msa0086500:CDS | 45.0% | |
| CTCTCATATCCCCACCTATT+TGG | - | chr1_2:67227815-67227834 | None:intergenic | 45.0% | |
| GAGCAACTCTATGTATGCAC+TGG | + | chr1_2:67227832-67227851 | Msa0086500:CDS | 45.0% | |
| ! | AAGGAACTTGCTCCTTGAGT+TGG | - | chr1_2:67227920-67227939 | None:intergenic | 45.0% |
| AGGAGCAAGTTCCTTCATGT+TGG | + | chr1_2:67227925-67227944 | Msa0086500:CDS | 45.0% | |
| GGAGTAGGAAAAGCTTGCAA+TGG | + | chr1_2:67228070-67228089 | Msa0086500:three_prime_UTR | 45.0% | |
| TGCCTCGTCATGGTAGTTCT+GGG | - | chr1_2:67225486-67225505 | None:intergenic | 50.0% | |
| ! | TAGCTTGTACTGCCTCGTCA+TGG | - | chr1_2:67225496-67225515 | None:intergenic | 50.0% |
| CGAGGCAGTACAAGCTAATG+AGG | + | chr1_2:67225499-67225518 | Msa0086500:CDS | 50.0% | |
| AGAGTCAAGGAGCTGCTTGA+AGG | + | chr1_2:67225581-67225600 | Msa0086500:CDS | 50.0% | |
| GAGTCAAGGAGCTGCTTGAA+GGG | + | chr1_2:67225582-67225601 | Msa0086500:CDS | 50.0% | |
| ! | TGTTTTACGCGAGCGAGCAT+TGG | + | chr1_2:67225926-67225945 | Msa0086500:intron | 50.0% |
| ATAACAAGGGCTGGGGAATG+GGG | - | chr1_2:67226013-67226032 | None:intergenic | 50.0% | |
| GATAACAAGGGCTGGGGAAT+GGG | - | chr1_2:67226014-67226033 | None:intergenic | 50.0% | |
| AGATAACAAGGGCTGGGGAA+TGG | - | chr1_2:67226015-67226034 | None:intergenic | 50.0% | |
| TTGCCGGTGTGTGCAAGAAT+TGG | + | chr1_2:67227048-67227067 | Msa0086500:CDS | 50.0% | |
| CGGTGTGTGCAAGAATTGGA+AGG | + | chr1_2:67227052-67227071 | Msa0086500:CDS | 50.0% | |
| TTGGTCGGGTAGGCTAATCA+AGG | - | chr1_2:67227165-67227184 | None:intergenic | 50.0% | |
| CAATAGGAAATGAACGGGGG+AGG | + | chr1_2:67227486-67227505 | Msa0086500:CDS | 50.0% | |
| GTCACTACCAAGGCCAACAT+AGG | + | chr1_2:67227548-67227567 | Msa0086500:CDS | 50.0% | |
| CACTACCAAGGCCAACATAG+GGG | + | chr1_2:67227550-67227569 | Msa0086500:CDS | 50.0% | |
| CAAGCTGAGTACCCCTATGT+TGG | - | chr1_2:67227564-67227583 | None:intergenic | 50.0% | |
| !! | CCTCGTCATGGTAGTTCTGG+GGG | - | chr1_2:67225484-67225503 | None:intergenic | 55.0% |
| ! | GCCTCGTCATGGTAGTTCTG+GGG | - | chr1_2:67225485-67225504 | None:intergenic | 55.0% |
| CTGCCTCGTCATGGTAGTTC+TGG | - | chr1_2:67225487-67225506 | None:intergenic | 55.0% | |
| !! | TACGCGAGCGAGCATTGGAA+AGG | + | chr1_2:67225931-67225950 | Msa0086500:intron | 55.0% |
| !! | ACGCGAGCGAGCATTGGAAA+GGG | + | chr1_2:67225932-67225951 | Msa0086500:intron | 55.0% |
| ! | GAGTACCCCTATGTTGGCCT+TGG | - | chr1_2:67227558-67227577 | None:intergenic | 55.0% |
| CCCCCAGAACTACCATGACG+AGG | + | chr1_2:67225481-67225500 | Msa0086500:CDS | 60.0% | |
| ! | AGGTGCTGCGGCAAGAGTCA+AGG | + | chr1_2:67225568-67225587 | Msa0086500:CDS | 60.0% |
| !! | CGAGCGAGCATTGGAAAGGG+TGG | + | chr1_2:67225935-67225954 | Msa0086500:intron | 60.0% |
| AGGAAATGAACGGGGGAGGG+TGG | + | chr1_2:67227490-67227509 | Msa0086500:CDS | 60.0% | |
| ! | GGGGAGGGTGGTTGACTTTG+TGG | + | chr1_2:67227502-67227521 | Msa0086500:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 67225473 | 67228197 | 67225473 | ID=Msa0086500;Name=Msa0086500 |
| chr1_2 | mRNA | 67225473 | 67228197 | 67225473 | ID=Msa0086500-mRNA-1;Parent=Msa0086500;Name=Msa0086500-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0.5|1|1|1|2|197|416 |
| chr1_2 | exon | 67225473 | 67225674 | 67225473 | ID=Msa0086500-mRNA-1:exon:22751;Parent=Msa0086500-mRNA-1 |
| chr1_2 | exon | 67226952 | 67228197 | 67226952 | ID=Msa0086500-mRNA-1:exon:22752;Parent=Msa0086500-mRNA-1 |
| chr1_2 | CDS | 67225473 | 67225674 | 67225473 | ID=Msa0086500-mRNA-1:cds;Parent=Msa0086500-mRNA-1 |
| chr1_2 | CDS | 67226952 | 67228000 | 67226952 | ID=Msa0086500-mRNA-1:cds;Parent=Msa0086500-mRNA-1 |
| chr1_2 | three_prime_UTR | 67228001 | 67228197 | 67228001 | ID=Msa0086500-mRNA-1:three_prime_utr;Parent=Msa0086500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
