AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0087760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0087760 MtrunA17_Chr1g0204651 97.853 326 7 0 385 710 15 340 0.0 661
Msa0087760 MtrunA17_Chr1g0204651 89.381 339 35 1 5 342 2 340 0.0 625
Msa0087760 MtrunA17_Chr7g0274061 65.385 338 113 1 9 342 12 349 6.78e-164 475
Msa0087760 MtrunA17_Chr7g0274061 65.046 329 112 1 385 710 21 349 3.40e-160 466
Msa0087760 MtrunA17_Chr7g0274041 62.941 340 123 3 6 343 5 343 6.72e-159 462
Msa0087760 MtrunA17_Chr7g0274041 61.774 327 123 2 385 710 17 342 5.79e-152 444
Msa0087760 MtrunA17_Chr7g0274071 63.205 337 122 1 8 344 13 347 1.32e-158 462
Msa0087760 MtrunA17_Chr7g0274071 62.883 326 118 2 385 710 23 345 2.85e-153 448
Msa0087760 MtrunA17_Chr7g0222171 57.185 341 139 3 8 347 4 338 4.00e-133 396
Msa0087760 MtrunA17_Chr7g0222171 57.669 326 130 5 385 709 14 332 5.82e-126 378
Msa0087760 MtrunA17_Chr7g0221791 55.814 344 139 5 8 347 4 338 1.09e-127 382
Msa0087760 MtrunA17_Chr7g0221791 57.055 326 132 6 385 709 14 332 3.46e-122 368
Msa0087760 MtrunA17_Chr7g0222121 50.794 378 139 6 8 347 4 372 3.16e-120 364
Msa0087760 MtrunA17_Chr7g0222121 51.667 360 132 7 385 709 14 366 8.16e-115 350
Msa0087760 MtrunA17_Chr7g0274081 62.755 196 71 1 517 710 2 197 2.47e-88 275
Msa0087760 MtrunA17_Chr7g0274081 60.714 196 75 1 149 342 2 197 1.26e-82 260
Msa0087760 MtrunA17_Chr7g0221781 54.264 129 57 2 8 136 4 130 4.11e-38 138
Msa0087760 MtrunA17_Chr7g0221781 52.500 120 54 3 385 504 14 130 3.20e-31 119
Msa0087760 MtrunA17_Chr7g0221771 50.909 110 50 2 600 709 1 106 5.13e-32 120
Msa0087760 MtrunA17_Chr7g0221771 50.476 105 48 1 237 341 6 106 1.09e-30 116
Msa0087760 MtrunA17_Chr7g0274091 57.895 95 39 1 4 98 6 99 7.83e-32 119
Msa0087760 MtrunA17_Chr7g0274091 59.551 89 34 1 385 471 19 107 8.06e-29 111
Msa0087760 MtrunA17_Chr7g0222141 80.303 66 13 0 522 587 65 130 1.10e-31 121
Msa0087760 MtrunA17_Chr7g0222141 57.732 97 32 1 123 219 43 130 2.81e-30 117
Msa0087760 MtrunA17_Chr7g0222151 60.526 76 30 0 600 675 1 76 8.96e-28 106
Msa0087760 MtrunA17_Chr7g0222151 60.526 76 30 0 232 307 1 76 1.76e-26 103
Msa0087760 MtrunA17_Chr1g0169691 30.154 325 191 12 13 315 6 316 2.52e-26 110
Msa0087760 MtrunA17_Chr1g0169691 29.907 321 188 12 385 683 11 316 5.77e-24 103
Msa0087760 MtrunA17_Chr3g0095421 29.321 324 195 12 10 311 37 348 2.83e-26 111
Msa0087760 MtrunA17_Chr3g0095421 28.840 319 188 11 385 679 45 348 1.94e-24 105
Msa0087760 MtrunA17_Chr3g0127491 28.571 336 192 16 7 315 35 349 2.78e-24 105
Msa0087760 MtrunA17_Chr3g0127491 28.308 325 188 14 385 683 44 349 9.14e-23 100
Msa0087760 MtrunA17_Chr8g0380261 25.641 351 208 11 8 312 40 383 1.85e-21 97.4
Msa0087760 MtrunA17_Chr8g0380261 25.146 342 205 9 385 681 49 384 1.30e-20 94.7
Msa0087760 MtrunA17_Chr1g0167421 26.807 332 192 12 12 299 65 389 3.65e-21 96.7
Msa0087760 MtrunA17_Chr1g0167421 26.263 297 175 12 413 667 95 389 4.06e-17 84.3
Msa0087760 MtrunA17_Chr4g0049341 28.980 245 159 6 12 247 5 243 2.81e-19 89.4
Msa0087760 MtrunA17_Chr4g0049341 27.843 255 161 8 385 623 11 258 9.68e-17 82.0
Msa0087760 MtrunA17_Chr4g0018921 28.228 333 161 15 6 311 1 282 2.03e-15 77.8
Msa0087760 MtrunA17_Chr4g0018921 24.444 315 176 10 399 691 20 294 1.65e-11 66.2
Msa0087760 MtrunA17_Chr7g0221801 47.826 69 35 1 8 76 4 71 3.28e-14 68.6
Msa0087760 MtrunA17_Chr2g0321131 25.740 338 212 13 3 314 49 373 7.95e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0087760 AT1G60710.1 57.313 335 139 3 8 341 7 338 2.62e-128 384
Msa0087760 AT1G60710.1 57.055 326 135 4 385 709 17 338 6.74e-123 370
Msa0087760 AT1G60680.1 56.083 337 143 4 7 341 6 339 1.67e-126 380
Msa0087760 AT1G60680.1 56.442 326 138 3 385 709 17 339 2.08e-125 377
Msa0087760 AT1G60690.1 55.655 336 145 3 7 341 6 338 1.98e-126 379
Msa0087760 AT1G60690.1 55.521 326 140 4 385 709 17 338 5.86e-122 368
Msa0087760 AT1G60750.1 54.155 349 140 4 1 348 1 330 5.37e-125 375
Msa0087760 AT1G60750.1 55.692 325 125 4 385 709 18 323 5.71e-121 365
Msa0087760 AT1G60730.1 54.839 341 150 3 8 347 7 344 1.34e-124 375
Msa0087760 AT1G60730.1 55.521 326 140 4 385 709 17 338 1.88e-120 364
Msa0087760 AT1G10810.1 55.162 339 146 5 8 344 7 341 9.71e-122 367
Msa0087760 AT1G10810.1 55.521 326 140 4 385 709 17 338 5.30e-118 358
Msa0087760 AT1G60730.3 51.801 361 150 4 8 347 7 364 7.98e-120 363
Msa0087760 AT1G60730.3 52.312 346 140 5 385 709 17 358 1.25e-115 352
Msa0087760 AT1G10810.3 58.955 268 106 3 443 709 22 286 2.61e-103 318
Msa0087760 AT1G10810.3 56.667 270 114 2 76 344 22 289 1.28e-100 311
Msa0087760 AT1G60680.2 64.651 215 74 2 7 220 6 219 3.33e-90 282
Msa0087760 AT1G60680.2 64.216 204 72 1 385 588 17 219 4.50e-86 271
Msa0087760 AT1G10810.2 58.974 234 92 4 8 239 7 238 4.05e-85 269
Msa0087760 AT1G10810.2 60.377 212 81 3 385 595 17 226 4.54e-78 251
Msa0087760 AT1G60730.2 53.793 145 64 2 8 152 7 148 4.83e-42 151
Msa0087760 AT1G60730.2 52.206 136 61 3 385 520 17 148 1.27e-35 133
Msa0087760 AT1G04690.1 31.699 306 182 10 13 301 6 301 9.40e-31 124
Msa0087760 AT1G04690.1 31.090 312 185 11 377 669 1 301 2.26e-28 117
Msa0087760 AT1G06690.1 29.141 326 193 11 10 311 48 359 2.39e-27 115
Msa0087760 AT1G06690.1 28.875 329 191 12 385 685 56 369 1.14e-24 107
Msa0087760 AT5G53580.1 29.129 333 188 15 10 315 39 350 2.06e-23 103
Msa0087760 AT5G53580.1 27.778 324 191 13 385 683 45 350 2.30e-21 97.1
Msa0087760 AT4G33670.1 31.163 215 133 6 13 218 9 217 2.49e-22 99.0
Msa0087760 AT4G33670.1 28.627 255 159 8 385 623 14 261 8.98e-20 91.3
Msa0087760 AT1G04420.1 26.496 351 203 13 12 315 60 402 6.87e-19 90.1
Msa0087760 AT3G53880.1 26.087 253 124 10 54 282 42 255 3.34e-11 65.5
Msa0087760 AT3G53880.2 26.087 253 124 10 54 282 42 255 3.62e-11 65.5
Msa0087760 AT2G27680.1 23.171 328 217 11 10 314 48 363 4.88e-11 65.9

Find 176 sgRNAs with CRISPR-Local

Find 450 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATCTGATGGCATGGTTT+TGG 0.180811 1_2:+68696570 Msa0087760:CDS
TTATTTCAAGCCTATCTTCT+TGG 0.229354 1_2:+68698365 Msa0087760:three_prime_UTR
AAGGTTTACAGGAGAAAATT+TGG 0.231620 1_2:+68697553 Msa0087760:CDS
TTTGGATGTGGAGGATTATC+TGG 0.250656 1_2:+68691556 Msa0087760:CDS
TTTGGATGTGGAGGATTATC+TGG 0.250656 1_2:+68696080 Msa0087760:CDS
CAGCACTCCCTCACATATTC+AGG 0.270626 1_2:-68692073 None:intergenic
CAGCACTCCCTCACATATTC+AGG 0.270626 1_2:-68696607 None:intergenic
GAAGGAAAGATAAAATATAT+TGG 0.282400 1_2:+68696862 Msa0087760:CDS
AGATGGATGTTCAATTATTA+AGG 0.288430 1_2:+68691606 Msa0087760:CDS
AGATGGATGTTCAATTATTA+AGG 0.288430 1_2:+68696130 Msa0087760:CDS
TGTTTCAACTTTGCATCTTT+AGG 0.293414 1_2:+68690731 Msa0087760:five_prime_UTR
GTTCAATTGGCTACAAAGTT+TGG 0.297740 1_2:+68692010 Msa0087760:CDS
GCAAGTCCCAAGAGTTAAAC+TGG 0.317895 1_2:+68690799 Msa0087760:CDS
GAGATCTGATGTATCGAAAA+AGG 0.319260 1_2:-68691650 None:intergenic
GAGATCTGATGTATCGAAAA+AGG 0.319260 1_2:-68696174 None:intergenic
AAGCTTACAGTTTCTTCAAT+TGG 0.320394 1_2:-68696703 None:intergenic
TGCAAATGGAGTATTCCTTA+TGG 0.321118 1_2:+68692401 Msa0087760:CDS
TCCTATTACTGCTTTGGAAA+TGG 0.326973 1_2:+68696933 Msa0087760:CDS
GTCCAATTGGCTACGAAGTT+TGG 0.338391 1_2:+68696541 Msa0087760:CDS
ATAGTATATCACAATATCTT+TGG 0.338665 1_2:+68698154 Msa0087760:CDS
GCTATGCATCCAAGGTTTAC+AGG 0.342718 1_2:+68697542 Msa0087760:CDS
ATTAAGGAAGTATTCAATAG+AGG 0.343469 1_2:+68691622 Msa0087760:CDS
ATTAAGGAAGTATTCAATAG+AGG 0.343469 1_2:+68696146 Msa0087760:CDS
GAAGGAAAGATAAGACATAT+TGG 0.346838 1_2:+68692316 Msa0087760:CDS
TGGAAATGGAGTATTCCTTA+TGG 0.354234 1_2:+68696947 Msa0087760:CDS
ATTAGCATGGCTTCTGCATC+AGG 0.361890 1_2:+68693058 Msa0087760:CDS
ATTAGCATGGCTTCTGCATC+AGG 0.361890 1_2:+68697649 Msa0087760:CDS
CAGGTTCACTGGAGTAAATC+TGG 0.365796 1_2:+68692962 Msa0087760:CDS
CAGATTTACTCCAGTGAACC+TGG 0.365930 1_2:-68692961 None:intergenic
AAGCTTACGGTGTCTTCAAT+TGG 0.376667 1_2:-68692169 None:intergenic
ACTGGGTAGCCATGGTTTAG+AGG 0.377445 1_2:+68690817 Msa0087760:CDS
TCCATTTGCAAAGCAGTAAT+AGG 0.379605 1_2:-68692388 None:intergenic
TCCATTTCCAAAGCAGTAAT+AGG 0.379605 1_2:-68696934 None:intergenic
ATTTCAACAACCTTTGGCTT+TGG 0.387417 1_2:+68690678 Msa0087760:five_prime_UTR
AGTTCATCCTATTACTGCTT+TGG 0.389070 1_2:+68696927 Msa0087760:CDS
TCCTATTACTGCTTTGCAAA+TGG 0.395606 1_2:+68692387 Msa0087760:CDS
TAATTGAACATCCATCTTCA+TGG 0.401357 1_2:-68691600 None:intergenic
TCTAGGTTGGGATTTGGATG+TGG 0.401427 1_2:+68691544 Msa0087760:CDS
TCTAGGTTGGGATTTGGATG+TGG 0.401427 1_2:+68696068 Msa0087760:CDS
TTCCCAGCGATTTCCGCAAC+AGG 0.402843 1_2:-68693539 None:intergenic
CGCCAAACTTCGTAGCCAAT+TGG 0.403863 1_2:-68696543 None:intergenic
GACATAGACGTCTTTGTTGT+CGG 0.405924 1_2:-68694177 None:intergenic
TTTGTCTAGTCAGAGCTTGC+TGG 0.406910 1_2:+68697163 Msa0087760:CDS
TTGCATTCTTGCAGAGAACT+AGG 0.412767 1_2:+68692625 Msa0087760:intron
AAGGAAAGATAAAATATATT+GGG 0.415250 1_2:+68696863 Msa0087760:CDS
CAGGTGTCTAGGTTGGGATT+TGG 0.416345 1_2:+68691538 Msa0087760:intron
CAGGTGTCTAGGTTGGGATT+TGG 0.416345 1_2:+68696062 Msa0087760:intron
AAGGAAAGATAAGACATATT+GGG 0.422532 1_2:+68692317 Msa0087760:CDS
ACAGTTTGTCGCAATATAGT+TGG 0.424329 1_2:+68693573 Msa0087760:CDS
GTGGACATTTCAACAACCTT+TGG 0.427271 1_2:+68690672 Msa0087760:five_prime_UTR
TCCCCAGCAATTTCCTCAAC+GGG 0.432009 1_2:-68698120 None:intergenic
AGATGAAAATCCAAGAAGAT+AGG 0.438862 1_2:-68698375 None:intergenic
TTCTCTCTATGCAATTACTT+TGG 0.439392 1_2:-68698195 None:intergenic
GGCTACCCAGTTTAACTCTT+GGG 0.439987 1_2:-68690805 None:intergenic
TCTCTATGCAATTACTTTGG+CGG 0.441447 1_2:-68698192 None:intergenic
GCAATAATTGTGTTGAAGAA+TGG 0.441753 1_2:+68690763 Msa0087760:exon
GTTCCTGTTGCGGAAATCGC+TGG 0.442573 1_2:+68693536 Msa0087760:CDS
TTGCATCTTTAGGCAAAGAA+AGG 0.444354 1_2:+68690741 Msa0087760:five_prime_UTR
TGCAGGAAAGTCAGTGGTAG+AGG 0.445925 1_2:+68697139 Msa0087760:CDS
TGCAGGAAAGTCGGTGGTAG+AGG 0.447986 1_2:+68692690 Msa0087760:CDS
TCACTATGCAATTACTTTGG+CGG 0.451369 1_2:-68693611 None:intergenic
TTCAATGTCACGGGACCATA+AGG 0.451962 1_2:-68692416 None:intergenic
TTCAATGTCACGGGACCATA+AGG 0.451962 1_2:-68696962 None:intergenic
TGGCTACCCAGTTTAACTCT+TGG 0.452145 1_2:-68690806 None:intergenic
AATATGCATCCCAGGTTCAC+TGG 0.452442 1_2:+68692951 Msa0087760:CDS
CTATGAACGAATCAATGTAT+TGG 0.457910 1_2:+68693001 Msa0087760:CDS
TTGGCGTTACTTTATCTGAT+GGG 0.457988 1_2:+68692029 Msa0087760:CDS
TTAAGGAAGTATTCAATAGA+GGG 0.463934 1_2:+68691623 Msa0087760:CDS
TTAAGGAAGTATTCAATAGA+GGG 0.463934 1_2:+68696147 Msa0087760:CDS
GCTTACACAAGAAGATTTGA+AGG 0.464856 1_2:+68698080 Msa0087760:CDS
AAGAAATAATTCCACTCTGC+AGG 0.468173 1_2:+68692440 Msa0087760:CDS
AAGAAATAATTCCACTCTGC+AGG 0.468173 1_2:+68696986 Msa0087760:CDS
CAAACATGATAATGAAATCA+TGG 0.469776 1_2:+68691681 Msa0087760:CDS
CAAACATGATAATGAAATCA+TGG 0.469776 1_2:+68696205 Msa0087760:CDS
TGGAATGCAGGTGTCTAGGT+TGG 0.481219 1_2:+68696055 Msa0087760:intron
AGGTTGGGATTTGGATGTGG+AGG 0.483229 1_2:+68691547 Msa0087760:CDS
AGGTTGGGATTTGGATGTGG+AGG 0.483229 1_2:+68696071 Msa0087760:CDS
CTATGAACGAATCAATGACT+TGG 0.485970 1_2:+68697592 Msa0087760:CDS
CTCAAACAACTTGTAAATGA+AGG 0.486296 1_2:+68696844 Msa0087760:CDS
ATTAAGACAGTACCGGGGAT+AGG 0.486830 1_2:-68693095 None:intergenic
AACAACCTTTGGCTTTGGCA+TGG 0.487757 1_2:+68690683 Msa0087760:five_prime_UTR
TATTTCTTCTTCAATGTCAC+GGG 0.490828 1_2:-68692425 None:intergenic
TATTTCTTCTTCAATGTCAC+GGG 0.490828 1_2:-68696971 None:intergenic
TTAAGACAGTACCGGGGATA+GGG 0.491603 1_2:-68693094 None:intergenic
CGTTACTTTATCTGATGGCA+TGG 0.494293 1_2:+68696564 Msa0087760:CDS
TCTTGCAGAGAACTAGGGAT+TGG 0.494459 1_2:+68692631 Msa0087760:intron
GCTGTGAAGCTAGTCTCAAC+CGG 0.495009 1_2:+68696626 Msa0087760:CDS
TTCCAAATAAAAGACCTACT+AGG 0.495848 1_2:-68698434 None:intergenic
TAATGAAATCATGGTTGGTA+AGG 0.496217 1_2:+68691690 Msa0087760:CDS
TAATGAAATCATGGTTGGTA+AGG 0.496217 1_2:+68696214 Msa0087760:CDS
TTCTGATGCAGTTCCTGTTG+CGG 0.496669 1_2:+68693526 Msa0087760:CDS
GCTCCCCTCTCCCATGAAGA+TGG 0.496750 1_2:+68691589 Msa0087760:CDS
TTACATAACTATATGTTACA+TGG 0.503059 1_2:+68698334 Msa0087760:three_prime_UTR
GGAATGCAGGTGTCTAGGTT+GGG 0.504771 1_2:+68696056 Msa0087760:intron
ATAAAGGCAGTACCAGGGAT+AGG 0.507637 1_2:-68697686 None:intergenic
TTTGGCGTTACTTTATCTGA+TGG 0.508572 1_2:+68692028 Msa0087760:CDS
TCCAAATAAAAGACCTACTA+GGG 0.510890 1_2:-68698433 None:intergenic
TTTGTGGAATGCAGGTGTCT+AGG 0.515102 1_2:+68696051 Msa0087760:intron
CTCACTGATGTGGATTCCCA+TGG 0.516053 1_2:-68694202 None:intergenic
GTTCCCGTTGAGGAAATTGC+TGG 0.516063 1_2:+68698117 Msa0087760:CDS
AAGAACTTTGAAAACAACAT+TGG 0.517205 1_2:+68698042 Msa0087760:CDS
TTCGATACATCAGATCTCTA+CGG 0.518721 1_2:+68691655 Msa0087760:CDS
TTCGATACATCAGATCTCTA+CGG 0.518721 1_2:+68696179 Msa0087760:CDS
GCTCCCCTCTCACATGAAGA+TGG 0.521397 1_2:+68696113 Msa0087760:CDS
AATTACGATGCCTCCCTAGT+AGG 0.522075 1_2:+68698420 Msa0087760:three_prime_UTR
TTATTTCTTCTTCAATGTCA+CGG 0.524264 1_2:-68692426 None:intergenic
TTATTTCTTCTTCAATGTCA+CGG 0.524264 1_2:-68696972 None:intergenic
TTTGGCGTTACTTTATCTGA+TGG 0.527241 1_2:+68696559 Msa0087760:CDS
TGAAATGCAGGTGTCTAGGT+TGG 0.531272 1_2:+68691531 Msa0087760:intron
CATGATAATGAAATCATGGT+TGG 0.532090 1_2:+68691685 Msa0087760:CDS
CATGATAATGAAATCATGGT+TGG 0.532090 1_2:+68696209 Msa0087760:CDS
AAGAACTTTGAAAACAACAT+TGG 0.532327 1_2:+68693461 Msa0087760:CDS
CTTCTCAATTAGCATTAGCA+TGG 0.532747 1_2:+68693045 Msa0087760:CDS
CTTCTCAATTAGCATTAGCA+TGG 0.532747 1_2:+68697636 Msa0087760:CDS
AACATCCATCTTCATGGGAG+AGG 0.535281 1_2:-68691594 None:intergenic
TGCATTCTTGCAGAGAACTA+GGG 0.536671 1_2:+68692626 Msa0087760:intron
CTCCCCAGCAATTTCCTCAA+CGG 0.536860 1_2:-68698121 None:intergenic
TTCCCGTTGAGGAAATTGCT+GGG 0.537080 1_2:+68698118 Msa0087760:CDS
TAAAGGCAGTACCAGGGATA+GGG 0.538643 1_2:-68697685 None:intergenic
GTAGAGAAGTTATTTCATTG+AGG 0.540205 1_2:-68698271 None:intergenic
CATAACAGGCTATGCATCCA+AGG 0.541468 1_2:+68697534 Msa0087760:intron
AGAGCTTGACATTGGAATTG+TGG 0.541688 1_2:+68697088 Msa0087760:CDS
AATTGAACATCCATCTTCAT+GGG 0.543483 1_2:-68691599 None:intergenic
GAAATGCAGGTGTCTAGGTT+GGG 0.546430 1_2:+68691532 Msa0087760:intron
TTTGTGAAATGCAGGTGTCT+AGG 0.548699 1_2:+68691527 Msa0087760:intron
CATGCTAATGCTAATTGAGA+AGG 0.548715 1_2:-68693044 None:intergenic
CATGCTAATGCTAATTGAGA+AGG 0.548715 1_2:-68697635 None:intergenic
TTTGCCTAGTCAGAGCGTAC+TGG 0.551045 1_2:+68692714 Msa0087760:CDS
AGCACTCCCTCACATATTCA+GGG 0.555636 1_2:-68692072 None:intergenic
AGCACTCCCTCACATATTCA+GGG 0.555636 1_2:-68696606 None:intergenic
ACATCCATCTTCATGGGAGA+GGG 0.558062 1_2:-68691593 None:intergenic
ACTTGCAGAGAGCTTGACAT+TGG 0.558420 1_2:+68697080 Msa0087760:intron
ATAGTATATCTGTGAAGCAT+AGG 0.559345 1_2:-68694231 None:intergenic
TTCCTGTTGCGGAAATCGCT+GGG 0.562070 1_2:+68693537 Msa0087760:CDS
TTCTGAAGCAGTTCCCGTTG+AGG 0.562114 1_2:+68698107 Msa0087760:CDS
TGGCGTTACTTTATCTGATG+GGG 0.564408 1_2:+68692030 Msa0087760:CDS
TGTAACAGAATATGCATCCC+AGG 0.566555 1_2:+68692943 Msa0087760:intron
AGAGTTAAACTGGGTAGCCA+TGG 0.572311 1_2:+68690809 Msa0087760:CDS
ACATCCATCTTCATGTGAGA+GGG 0.576652 1_2:-68696117 None:intergenic
GATAAGACATATTGGGCTGT+CGG 0.578864 1_2:+68692324 Msa0087760:CDS
AACATCCATCTTCATGTGAG+AGG 0.581548 1_2:-68696118 None:intergenic
CATACCAGTACGCTCTGACT+AGG 0.584560 1_2:-68692718 None:intergenic
TAAGGAAGTATTCAATAGAG+GGG 0.591144 1_2:+68691624 Msa0087760:CDS
TAAGGAAGTATTCAATAGAG+GGG 0.591144 1_2:+68696148 Msa0087760:CDS
TACATAACTATATGTTACAT+GGG 0.596068 1_2:+68698335 Msa0087760:three_prime_UTR
TAAAACCATGCCAAAGCCAA+AGG 0.596428 1_2:-68690688 None:intergenic
AACGACATAATCCCTATCCC+TGG 0.597106 1_2:+68697674 Msa0087760:CDS
AAAATATATTGGGTTGTCAG+AGG 0.607927 1_2:+68696873 Msa0087760:CDS
AGGTACCCCTGAATATGTGA+GGG 0.608935 1_2:+68692066 Msa0087760:CDS
AGGTACCCCTGAATATGTGA+GGG 0.608935 1_2:+68696600 Msa0087760:CDS
AGATTTACTCCAGTGAACCT+GGG 0.614522 1_2:-68692960 None:intergenic
TAGGTGTCTTCTCACTGATG+TGG 0.614568 1_2:-68694212 None:intergenic
CAATATACTTGACATCAAGC+CGG 0.614718 1_2:-68696645 None:intergenic
ATTGGGCTGTCGGACGCTAG+TGG 0.619279 1_2:+68692334 Msa0087760:CDS
CATCCATCTTCATGGGAGAG+GGG 0.619881 1_2:-68691592 None:intergenic
AAGGTACCCCTGAATATGTG+AGG 0.623139 1_2:+68692065 Msa0087760:CDS
AAGGTACCCCTGAATATGTG+AGG 0.623139 1_2:+68696599 Msa0087760:CDS
TCCCGTTGAGGAAATTGCTG+GGG 0.626472 1_2:+68698119 Msa0087760:CDS
AAGACGTCTATGTCAACCAT+GGG 0.633796 1_2:+68694186 Msa0087760:CDS
AGGACAACTCGTAGAACGAA+GGG 0.635649 1_2:+68694147 Msa0087760:intron
TTGGAACTGAAGTGTCAACT+CGG 0.636787 1_2:-68692150 None:intergenic
CAATTTGTCTACCTGCAGAG+TGG 0.638313 1_2:-68692451 None:intergenic
CATCCATCTTCATGTGAGAG+GGG 0.640878 1_2:-68696116 None:intergenic
CAAGTCCCAAGAGTTAAACT+GGG 0.641040 1_2:+68690800 Msa0087760:CDS
GTATGTTGGTACGGAGACAG+TGG 0.643336 1_2:+68690653 None:intergenic
AATGACATAATCCCTATCCC+CGG 0.651246 1_2:+68693083 Msa0087760:CDS
CAGGACAACTCGTAGAACGA+AGG 0.653656 1_2:+68694146 Msa0087760:intron
TTAGCATGGCTTCTGCATCA+GGG 0.655505 1_2:+68693059 Msa0087760:CDS
TTAGCATGGCTTCTGCATCA+GGG 0.655505 1_2:+68697650 Msa0087760:CDS
AAAGACGTCTATGTCAACCA+TGG 0.656907 1_2:+68694185 Msa0087760:CDS
GCTGTGAAGCGAGTCTCAAG+CGG 0.663018 1_2:+68692092 Msa0087760:CDS
AAATAAAAGACCTACTAGGG+AGG 0.668609 1_2:-68698430 None:intergenic
GCACTCCCTCACATATTCAG+GGG 0.678614 1_2:-68692071 None:intergenic
GCACTCCCTCACATATTCAG+GGG 0.678614 1_2:-68696605 None:intergenic
CAATTAATATACCTGCAGAG+TGG 0.699441 1_2:-68696997 None:intergenic
GGCCACTTACCTCTAAACCA+TGG 0.706817 1_2:-68690826 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATGTTTTTTTTTTTTTTTT+TGG + chr1_2:68695349-68695368 Msa0087760:intron 10.0%
!! TATTAATAGTTATAGATTAA+AGG + chr1_2:68695532-68695551 Msa0087760:intron 10.0%
!! TAAAATTTACTAATCAATAA+AGG + chr1_2:68697803-68697822 Msa0087760:intron 10.0%
!! TAAATAAGTAAAAACTTCAA+AGG - chr1_2:68691192-68691211 None:intergenic 15.0%
!!! TATTTTTTACCATCATTATA+AGG - chr1_2:68692799-68692818 None:intergenic 15.0%
!! AAAATAACTTTAATGAGATA+AGG + chr1_2:68692813-68692832 Msa0087760:intron 15.0%
!! TTGAATATAAATAGTAATTG+TGG + chr1_2:68693756-68693775 Msa0087760:intron 15.0%
!! AATATACAATTTAAATGAGA+TGG + chr1_2:68694910-68694929 Msa0087760:intron 15.0%
!! ACAAACAAAAAATAAATTTG+AGG + chr1_2:68695180-68695199 Msa0087760:intron 15.0%
!!! TTCACTTAATTTTACATTTT+TGG + chr1_2:68695584-68695603 Msa0087760:intron 15.0%
!!! TTGAAGATTTATTAGTTTAT+TGG - chr1_2:68696251-68696270 None:intergenic 15.0%
!! TTATAACATGGTATAAATAT+AGG + chr1_2:68696427-68696446 Msa0087760:intron 15.0%
!! AAGGAAAGATAAAATATATT+GGG + chr1_2:68696863-68696882 Msa0087760:CDS 15.0%
!! TGAAGAATATCTTAATATAA+TGG + chr1_2:68697230-68697249 Msa0087760:intron 15.0%
!! TGTAGAATTTCTTATTATAA+TGG + chr1_2:68697414-68697433 Msa0087760:intron 15.0%
!!! TGATATTATATAGTTCTGTA+TGG - chr1_2:68691392-68691411 None:intergenic 20.0%
!!! AATCTTTTGTTTAATGTTTG+TGG + chr1_2:68691470-68691489 Msa0087760:intron 20.0%
!! ATTTCACAAAATGAAAAAAC+AGG - chr1_2:68691517-68691536 None:intergenic 20.0%
!!! TCAAAATGATTTATTAGCTT+TGG - chr1_2:68691727-68691746 None:intergenic 20.0%
!! TTTGTGTAAAAGAAAACTTA+AGG + chr1_2:68691937-68691956 Msa0087760:intron 20.0%
!! ATATATTATTAAGACAGTAC+CGG - chr1_2:68693105-68693124 None:intergenic 20.0%
!!! TTTTTTCTTTCTTTATCAAG+TGG - chr1_2:68693236-68693255 None:intergenic 20.0%
!! TACAATATCTACATACTTTA+TGG - chr1_2:68693370-68693389 None:intergenic 20.0%
!! TTATATTTGTTTGATACCAT+AGG + chr1_2:68693425-68693444 Msa0087760:intron 20.0%
!! TATATTTGTTTGATACCATA+GGG + chr1_2:68693426-68693445 Msa0087760:intron 20.0%
!! AAAAATGTTTACAAGTGAAA+AGG + chr1_2:68693678-68693697 Msa0087760:intron 20.0%
!! AAAATGTTTACAAGTGAAAA+GGG + chr1_2:68693679-68693698 Msa0087760:intron 20.0%
!!! AGTAAATTTAGGATAATATC+TGG - chr1_2:68693928-68693947 None:intergenic 20.0%
!! ATTCAATACAGAGTAAATTT+AGG - chr1_2:68693939-68693958 None:intergenic 20.0%
!! TACAATAGTAAAAGATAACT+TGG - chr1_2:68694483-68694502 None:intergenic 20.0%
!! AACAAAAGAAAGAAAGAATA+GGG - chr1_2:68695138-68695157 None:intergenic 20.0%
!! CAATATAATTTATAACATCG+TGG + chr1_2:68695411-68695430 Msa0087760:intron 20.0%
!! ATTTAAACTGAAACATGTTA+AGG - chr1_2:68695465-68695484 None:intergenic 20.0%
!! TATTATGAATGTATATCTGA+AGG - chr1_2:68695941-68695960 None:intergenic 20.0%
!! AAAATACATAAGCATTTGTA+TGG + chr1_2:68696291-68696310 Msa0087760:intron 20.0%
!! GTTTGCAAATTGTAATAATT+TGG + chr1_2:68696313-68696332 Msa0087760:intron 20.0%
!! AATTATTTAGATGTGACAAA+TGG + chr1_2:68696375-68696394 Msa0087760:intron 20.0%
!! TTACTGATATCTTTATAACA+TGG + chr1_2:68696415-68696434 Msa0087760:intron 20.0%
!!! TGTTTACACTATAATTTTTG+TGG + chr1_2:68696452-68696471 Msa0087760:intron 20.0%
!! TTTGTGGAAAAACAAATTTA+TGG + chr1_2:68696468-68696487 Msa0087760:intron 20.0%
!! GAAGGAAAGATAAAATATAT+TGG + chr1_2:68696862-68696881 Msa0087760:CDS 20.0%
!!! TTCTTCTGAAAGATAAATAA+AGG - chr1_2:68697705-68697724 None:intergenic 20.0%
!!! AGAAGAATATGATGATTTTT+TGG + chr1_2:68697718-68697737 Msa0087760:intron 20.0%
!! ATATTTGTTTGATACCATAT+AGG + chr1_2:68698006-68698025 Msa0087760:intron 20.0%
!! TATTTGTTTGATACCATATA+GGG + chr1_2:68698007-68698026 Msa0087760:intron 20.0%
!! ATAGTATATCACAATATCTT+TGG + chr1_2:68698154-68698173 Msa0087760:CDS 20.0%
!! TTACATAACTATATGTTACA+TGG + chr1_2:68698334-68698353 Msa0087760:three_prime_UTR 20.0%
!! TACATAACTATATGTTACAT+GGG + chr1_2:68698335-68698354 Msa0087760:three_prime_UTR 20.0%
!!! GAAGAAAACATAAAAGTACT+AGG + chr1_2:68690929-68690948 Msa0087760:intron 25.0%
! ATGTTAAAGATATCAGTTGA+AGG - chr1_2:68690994-68691013 None:intergenic 25.0%
! CTGATATCTTTAACATTAAG+AGG + chr1_2:68690998-68691017 Msa0087760:intron 25.0%
!! GTTTTTATGTGTGACTAAAA+TGG - chr1_2:68691259-68691278 None:intergenic 25.0%
! TGGAATTCAAAATTTCTAAC+TGG - chr1_2:68691306-68691325 None:intergenic 25.0%
! CTAATAGAGATTACTTATGA+TGG - chr1_2:68691326-68691345 None:intergenic 25.0%
!! TTTTTCATTTTGTGAAATGC+AGG + chr1_2:68691519-68691538 Msa0087760:intron 25.0%
! AGATGGATGTTCAATTATTA+AGG + chr1_2:68691606-68691625 Msa0087760:CDS 25.0%
!!! ATTAAGGAAGTATTCAATAG+AGG + chr1_2:68691622-68691641 Msa0087760:CDS 25.0%
!!! TTAAGGAAGTATTCAATAGA+GGG + chr1_2:68691623-68691642 Msa0087760:CDS 25.0%
!! CAAACATGATAATGAAATCA+TGG + chr1_2:68691681-68691700 Msa0087760:CDS 25.0%
!!! TCATTTTGATTGTAAGTCTA+AGG + chr1_2:68691738-68691757 Msa0087760:intron 25.0%
!!! CATTTTGATTGTAAGTCTAA+GGG + chr1_2:68691739-68691758 Msa0087760:intron 25.0%
!!! ATTCATCTATTTTCAAGTGT+TGG - chr1_2:68692233-68692252 None:intergenic 25.0%
! CTTAAAAAACTGGTAAATGA+AGG + chr1_2:68692298-68692317 Msa0087760:CDS 25.0%
! AAGGAAAGATAAGACATATT+GGG + chr1_2:68692317-68692336 Msa0087760:CDS 25.0%
!! TTATTTCTTCTTCAATGTCA+CGG - chr1_2:68692429-68692448 None:intergenic 25.0%
!! TCCAGTTAGTTTGATATATT+TGG + chr1_2:68692514-68692533 Msa0087760:intron 25.0%
!! ATATTTATAGCATTTTCCCT+CGG - chr1_2:68692868-68692887 None:intergenic 25.0%
! TATATTATTAAGACAGTACC+GGG - chr1_2:68693104-68693123 None:intergenic 25.0%
! CATTATGCAAATAACAGATA+AGG - chr1_2:68693276-68693295 None:intergenic 25.0%
! TTATCAGTATCAAGGATATA+AGG - chr1_2:68693301-68693320 None:intergenic 25.0%
! ATCAAACAAATATAAGCACT+TGG - chr1_2:68693420-68693439 None:intergenic 25.0%
!! AAGAACTTTGAAAACAACAT+TGG + chr1_2:68693461-68693480 Msa0087760:CDS 25.0%
! TTGTGGAAGTTATTAAGATT+AGG + chr1_2:68693773-68693792 Msa0087760:intron 25.0%
! TTATTAAGATTAGGCAGTTA+GGG + chr1_2:68693782-68693801 Msa0087760:intron 25.0%
! ATATCACACATAGTAACATT+AGG - chr1_2:68693863-68693882 None:intergenic 25.0%
! GGATAATATCTGGTATTTAT+TGG - chr1_2:68693918-68693937 None:intergenic 25.0%
!!! TTTTGATGGTTTTGATAAGA+GGG + chr1_2:68694002-68694021 Msa0087760:intron 25.0%
! AGAAAAGATGGAGAAAAATT+TGG + chr1_2:68694084-68694103 Msa0087760:intron 25.0%
!!! CATTCAGTTTTTGCTTTTTA+TGG + chr1_2:68694379-68694398 Msa0087760:intron 25.0%
! CATATAGAACATATCATCTT+TGG + chr1_2:68694596-68694615 Msa0087760:intron 25.0%
!!! TAATATCGGTTTAAAATGCT+CGG + chr1_2:68694690-68694709 Msa0087760:intron 25.0%
! GTTGATTGAACAAATTACAA+TGG + chr1_2:68694715-68694734 Msa0087760:intron 25.0%
! AAGCATATTATGACAGTTAA+AGG - chr1_2:68694786-68694805 None:intergenic 25.0%
!! ATAAATAACTCTTTTAGACG+TGG + chr1_2:68695027-68695046 Msa0087760:intron 25.0%
! TTATAATCCTTGAATGTATG+AGG + chr1_2:68695068-68695087 Msa0087760:intron 25.0%
! GAACAAAAGAAAGAAAGAAT+AGG - chr1_2:68695139-68695158 None:intergenic 25.0%
!!! TTTTTGGAAGCAAAAGTTTT+TGG + chr1_2:68695600-68695619 Msa0087760:intron 25.0%
!!! TTTTGGAAGCAAAAGTTTTT+GGG + chr1_2:68695601-68695620 Msa0087760:intron 25.0%
! AGAAATAAAACTAAGCCAAA+GGG - chr1_2:68695668-68695687 None:intergenic 25.0%
! AAGAAATAAAACTAAGCCAA+AGG - chr1_2:68695669-68695688 None:intergenic 25.0%
! AAAATTTACCTCTAAACCTT+GGG - chr1_2:68695787-68695806 None:intergenic 25.0%
! TGTGAAAAACAAATGTTAAG+TGG - chr1_2:68695828-68695847 None:intergenic 25.0%
! GAAGAATTCATTAAACATAG+TGG + chr1_2:68695876-68695895 Msa0087760:intron 25.0%
! TTCTTTCAAGATGAAACTTA+TGG + chr1_2:68695906-68695925 Msa0087760:intron 25.0%
! AAGATGAAACTTATGGATAA+AGG + chr1_2:68695913-68695932 Msa0087760:intron 25.0%
! AAAACATCATAGCAATCATT+AGG - chr1_2:68695994-68696013 None:intergenic 25.0%
! ATTCCACAAAATGAAAAAAC+AGG - chr1_2:68696041-68696060 None:intergenic 25.0%
! AGATGGATGTTCAATTATTA+AGG + chr1_2:68691606-68691625 Msa0087760:CDS 25.0%
!!! ATTAAGGAAGTATTCAATAG+AGG + chr1_2:68691622-68691641 Msa0087760:CDS 25.0%
!!! TTAAGGAAGTATTCAATAGA+GGG + chr1_2:68691623-68691642 Msa0087760:CDS 25.0%
!! CAAACATGATAATGAAATCA+TGG + chr1_2:68691681-68691700 Msa0087760:CDS 25.0%
!! TTATTTCTTCTTCAATGTCA+CGG - chr1_2:68692429-68692448 None:intergenic 25.0%
! ATTAATTGCTTGACATATTC+AGG + chr1_2:68697749-68697768 Msa0087760:intron 25.0%
!! ATCTATTTCCAGATTTTACT+TGG + chr1_2:68697774-68697793 Msa0087760:intron 25.0%
! TAAGATAACCAAGTAAAATC+TGG - chr1_2:68697785-68697804 None:intergenic 25.0%
!! AAGAACTTTGAAAACAACAT+TGG + chr1_2:68693461-68693480 Msa0087760:CDS 25.0%
TGTTTCAACTTTGCATCTTT+AGG + chr1_2:68690731-68690750 Msa0087760:five_prime_UTR 30.0%
GCAATAATTGTGTTGAAGAA+TGG + chr1_2:68690763-68690782 Msa0087760:exon 30.0%
TAGGTGATTAGAAACACAAA+AGG + chr1_2:68690948-68690967 Msa0087760:intron 30.0%
TCATATGCTTGATTGAAGTA+AGG + chr1_2:68691063-68691082 Msa0087760:intron 30.0%
! TATTTTCATGATCATCGTCT+TGG + chr1_2:68691104-68691123 Msa0087760:intron 30.0%
! ATTTTCATGATCATCGTCTT+GGG + chr1_2:68691105-68691124 Msa0087760:intron 30.0%
!! AAAACTTCAAAGGAAGCATT+AGG - chr1_2:68691182-68691201 None:intergenic 30.0%
GGCATATCATGAAAGATAAT+AGG - chr1_2:68691230-68691249 None:intergenic 30.0%
TAATGTTTGTGGATTCTGAT+AGG + chr1_2:68691481-68691500 Msa0087760:intron 30.0%
AATGTTTGTGGATTCTGATA+GGG + chr1_2:68691482-68691501 Msa0087760:intron 30.0%
AATTGAACATCCATCTTCAT+GGG - chr1_2:68691602-68691621 None:intergenic 30.0%
TAATTGAACATCCATCTTCA+TGG - chr1_2:68691603-68691622 None:intergenic 30.0%
!! TAAGGAAGTATTCAATAGAG+GGG + chr1_2:68691624-68691643 Msa0087760:CDS 30.0%
! CATGATAATGAAATCATGGT+TGG + chr1_2:68691685-68691704 Msa0087760:CDS 30.0%
! TAATGAAATCATGGTTGGTA+AGG + chr1_2:68691690-68691709 Msa0087760:CDS 30.0%
AATTCCTTAGATGTGACAAA+TGG + chr1_2:68691843-68691862 Msa0087760:intron 30.0%
ATTCCTTAGATGTGACAAAT+GGG + chr1_2:68691844-68691863 Msa0087760:intron 30.0%
TTACTGATGTCGTTATAACA+CGG + chr1_2:68691882-68691901 Msa0087760:intron 30.0%
GGAAAATCATTGAAAGCTTA+CGG - chr1_2:68692185-68692204 None:intergenic 30.0%
!!! TCTATTTTCAAGTGTTGGAA+TGG - chr1_2:68692228-68692247 None:intergenic 30.0%
GAAGGAAAGATAAGACATAT+TGG + chr1_2:68692316-68692335 Msa0087760:CDS 30.0%
TATTTCTTCTTCAATGTCAC+GGG - chr1_2:68692428-68692447 None:intergenic 30.0%
AACTAACTGGAGTATAATTG+TGG - chr1_2:68692505-68692524 None:intergenic 30.0%
GCCAAATATATCAAACTAAC+TGG - chr1_2:68692518-68692537 None:intergenic 30.0%
GTGTTATGTTTGCGTTAATT+TGG + chr1_2:68692766-68692785 Msa0087760:intron 30.0%
! GGAGATTTTCCTTATAATGA+TGG + chr1_2:68692787-68692806 Msa0087760:intron 30.0%
ACTTTAATGAGATAAGGTTC+AGG + chr1_2:68692819-68692838 Msa0087760:intron 30.0%
CTATGAACGAATCAATGTAT+TGG + chr1_2:68693001-68693020 Msa0087760:CDS 30.0%
ATATTATTAAGACAGTACCG+GGG - chr1_2:68693103-68693122 None:intergenic 30.0%
GACAGTAATTATCAGTATCA+AGG - chr1_2:68693309-68693328 None:intergenic 30.0%
TTCTCACTATGCAATTACTT+TGG - chr1_2:68693617-68693636 None:intergenic 30.0%
CTAACAAAACACTTATTGCA+GGG - chr1_2:68693648-68693667 None:intergenic 30.0%
TCTAACAAAACACTTATTGC+AGG - chr1_2:68693649-68693668 None:intergenic 30.0%
GTTATTAAGATTAGGCAGTT+AGG + chr1_2:68693781-68693800 Msa0087760:intron 30.0%
AGTTAGGGTGTGTAATAAAT+AGG + chr1_2:68693797-68693816 Msa0087760:intron 30.0%
!!! GTTTTGATGGTTTTGATAAG+AGG + chr1_2:68694001-68694020 Msa0087760:intron 30.0%
ATACTTGAACATGGATTTGA+AGG + chr1_2:68694046-68694065 Msa0087760:intron 30.0%
TACTTGAACATGGATTTGAA+GGG + chr1_2:68694047-68694066 Msa0087760:intron 30.0%
ATAGTATATCTGTGAAGCAT+AGG - chr1_2:68694234-68694253 None:intergenic 30.0%
TCAAGTAACTAAGTAACTTG+TGG - chr1_2:68694457-68694476 None:intergenic 30.0%
!!! CTCATTGTCATTTTCATAGT+TGG + chr1_2:68694509-68694528 Msa0087760:intron 30.0%
TTCTCATTAGTTGTAAAGTG+TGG - chr1_2:68694554-68694573 None:intergenic 30.0%
GATATGTTCTATATGAAAGC+AGG - chr1_2:68694591-68694610 None:intergenic 30.0%
TAAATGAGATGAGATAGTCA+TGG - chr1_2:68694648-68694667 None:intergenic 30.0%
TATCACATTGCAGCTAATAT+CGG + chr1_2:68694676-68694695 Msa0087760:intron 30.0%
!! AATATCGGTTTAAAATGCTC+GGG + chr1_2:68694691-68694710 Msa0087760:intron 30.0%
ATGACGAACTAAAGAAACAT+CGG + chr1_2:68695240-68695259 Msa0087760:intron 30.0%
ATAATTTATAACATCGTGGC+AGG + chr1_2:68695415-68695434 Msa0087760:intron 30.0%
! TTTGGAAGCAAAAGTTTTTG+GGG + chr1_2:68695602-68695621 Msa0087760:intron 30.0%
GAAAATTTACCTCTAAACCT+TGG - chr1_2:68695788-68695807 None:intergenic 30.0%
TTAGGAATGGAGACAAAATT+TGG - chr1_2:68695976-68695995 None:intergenic 30.0%
ATCATAGCAATCATTAGGAA+TGG - chr1_2:68695989-68696008 None:intergenic 30.0%
AAAAAACAGGAGATACATGA+TGG - chr1_2:68696028-68696047 None:intergenic 30.0%
!!! TCTCCTGTTTTTTCATTTTG+TGG + chr1_2:68691511-68691530 Msa0087760:intron 30.0%
! TTTTTCATTTTGTGGAATGC+AGG + chr1_2:68696043-68696062 Msa0087760:intron 30.0%
!! TAAGGAAGTATTCAATAGAG+GGG + chr1_2:68691624-68691643 Msa0087760:CDS 30.0%
! CATGATAATGAAATCATGGT+TGG + chr1_2:68691685-68691704 Msa0087760:CDS 30.0%
! TAATGAAATCATGGTTGGTA+AGG + chr1_2:68691690-68691709 Msa0087760:CDS 30.0%
! TGAATCTTTTCTTCTGTCTT+AGG + chr1_2:68696492-68696511 Msa0087760:intron 30.0%
AAGCTTACAGTTTCTTCAAT+TGG - chr1_2:68696706-68696725 None:intergenic 30.0%
TTCCAACACTTGTAAATTCT+CGG + chr1_2:68696776-68696795 Msa0087760:intron 30.0%
CTTTAACATTGACCTCTTTA+TGG + chr1_2:68696809-68696828 Msa0087760:intron 30.0%
CTCAAACAACTTGTAAATGA+AGG + chr1_2:68696844-68696863 Msa0087760:CDS 30.0%
! AAAATATATTGGGTTGTCAG+AGG + chr1_2:68696873-68696892 Msa0087760:CDS 30.0%
TATTTCTTCTTCAATGTCAC+GGG - chr1_2:68692428-68692447 None:intergenic 30.0%
TGGTCAAAATAACATTGATG+AGG + chr1_2:68697250-68697269 Msa0087760:intron 30.0%
!!! ATGTTATTTTTCCTCACTTC+AGG - chr1_2:68697311-68697330 None:intergenic 30.0%
GAGGAAAAATAACATTGATG+AGG + chr1_2:68697316-68697335 Msa0087760:intron 30.0%
TGGTCAAAATAACATTGATG+AGG + chr1_2:68697250-68697269 Msa0087760:intron 30.0%
TCTTCTTTCTGTAACATAAC+AGG + chr1_2:68697520-68697539 Msa0087760:intron 30.0%
! AAATTTTCTCCTGTAAACCT+TGG - chr1_2:68697554-68697573 None:intergenic 30.0%
AAGGTTTACAGGAGAAAATT+TGG + chr1_2:68697553-68697572 Msa0087760:CDS 30.0%
! CAGTATATGGTCAAGATTTT+AGG - chr1_2:68697931-68697950 None:intergenic 30.0%
TTCTCTCTATGCAATTACTT+TGG - chr1_2:68698198-68698217 None:intergenic 30.0%
! GTAGAGAAGTTATTTCATTG+AGG - chr1_2:68698274-68698293 None:intergenic 30.0%
TTATTTCAAGCCTATCTTCT+TGG + chr1_2:68698365-68698384 Msa0087760:three_prime_UTR 30.0%
AGATGAAAATCCAAGAAGAT+AGG - chr1_2:68698378-68698397 None:intergenic 30.0%
! TATCTTCTTGGATTTTCATC+TGG + chr1_2:68698377-68698396 Msa0087760:three_prime_UTR 30.0%
! TTGGATTTTCATCTGGTAAA+TGG + chr1_2:68698384-68698403 Msa0087760:three_prime_UTR 30.0%
! ATTTCAACAACCTTTGGCTT+TGG + chr1_2:68690678-68690697 Msa0087760:five_prime_UTR 35.0%
TTGCATCTTTAGGCAAAGAA+AGG + chr1_2:68690741-68690760 Msa0087760:five_prime_UTR 35.0%
!! AGCAAATCTTGATGATGAAG+TGG - chr1_2:68690875-68690894 None:intergenic 35.0%
! GAATGATTAGTCCAACACTA+CGG + chr1_2:68690905-68690924 Msa0087760:intron 35.0%
ACACAAAAGGCTTACATGAA+TGG + chr1_2:68690961-68690980 Msa0087760:intron 35.0%
GTTGAAGGGACTAAAACAAA+TGG - chr1_2:68691038-68691057 None:intergenic 35.0%
AGCATATGATGACAGTTGAA+GGG - chr1_2:68691052-68691071 None:intergenic 35.0%
AAGCATATGATGACAGTTGA+AGG - chr1_2:68691053-68691072 None:intergenic 35.0%
ATGCTTGATTGAAGTAAGGT+CGG + chr1_2:68691067-68691086 Msa0087760:intron 35.0%
! TTTTCATGATCATCGTCTTG+GGG + chr1_2:68691106-68691125 Msa0087760:intron 35.0%
GTGTGACTAAAATGGATCTA+CGG - chr1_2:68691251-68691270 None:intergenic 35.0%
GACTGAGAAAACAAAATGCA+GGG - chr1_2:68691284-68691303 None:intergenic 35.0%
TCTCCACAATGAGTTAAAGA+TGG + chr1_2:68691357-68691376 Msa0087760:intron 35.0%
CTCCACAATGAGTTAAAGAT+GGG + chr1_2:68691358-68691377 Msa0087760:intron 35.0%
GAGATCTGATGTATCGAAAA+AGG - chr1_2:68691653-68691672 None:intergenic 35.0%
TTCGATACATCAGATCTCTA+CGG + chr1_2:68691655-68691674 Msa0087760:CDS 35.0%
! TGAGTCTTTTCTTCTGTCAT+AGG + chr1_2:68691961-68691980 Msa0087760:intron 35.0%
!!! TAGCCAATTGAACTTTTTCG+CGG - chr1_2:68692003-68692022 None:intergenic 35.0%
GTTCAATTGGCTACAAAGTT+TGG + chr1_2:68692010-68692029 Msa0087760:CDS 35.0%
! TTTGGCGTTACTTTATCTGA+TGG + chr1_2:68692028-68692047 Msa0087760:CDS 35.0%
! TTGGCGTTACTTTATCTGAT+GGG + chr1_2:68692029-68692048 Msa0087760:CDS 35.0%
!!! GATGGGGTTTTTAGAGTAAA+AGG + chr1_2:68692046-68692065 Msa0087760:CDS 35.0%
GTATGCATAACTAAGAAGAG+AGG - chr1_2:68692206-68692225 None:intergenic 35.0%
! CTTCGACTTGTTTATGAAGA+TGG + chr1_2:68692270-68692289 Msa0087760:intron 35.0%
TCCTATTACTGCTTTGCAAA+TGG + chr1_2:68692387-68692406 Msa0087760:CDS 35.0%
TCCATTTGCAAAGCAGTAAT+AGG - chr1_2:68692391-68692410 None:intergenic 35.0%
! TGCAAATGGAGTATTCCTTA+TGG + chr1_2:68692401-68692420 Msa0087760:CDS 35.0%
AAGAAATAATTCCACTCTGC+AGG + chr1_2:68692440-68692459 Msa0087760:CDS 35.0%
GTCAGTAGAAAAATACTGCA+GGG - chr1_2:68692908-68692927 None:intergenic 35.0%
TGTCAGTAGAAAAATACTGC+AGG - chr1_2:68692909-68692928 None:intergenic 35.0%
CATGCTAATGCTAATTGAGA+AGG - chr1_2:68693047-68693066 None:intergenic 35.0%
CTTCTCAATTAGCATTAGCA+TGG + chr1_2:68693045-68693064 Msa0087760:CDS 35.0%
ACAGTTTGTCGCAATATAGT+TGG + chr1_2:68693573-68693592 Msa0087760:CDS 35.0%
TCACTATGCAATTACTTTGG+CGG - chr1_2:68693614-68693633 None:intergenic 35.0%
AATAGGACAATTGCATGTTG+TGG + chr1_2:68693814-68693833 Msa0087760:intron 35.0%
TTGAATTGCTACCTATCAAC+TGG + chr1_2:68693953-68693972 Msa0087760:intron 35.0%
CGGATAGAAATACTTGAACA+TGG + chr1_2:68694037-68694056 Msa0087760:intron 35.0%
GTTCTTCATGAGAGAAAAGA+TGG + chr1_2:68694072-68694091 Msa0087760:intron 35.0%
TGAAAGCAGAAAAACAGAAG+TGG - chr1_2:68694310-68694329 None:intergenic 35.0%
AGAACATATCATCTTTGGCA+AGG + chr1_2:68694601-68694620 Msa0087760:intron 35.0%
GTGAATGTATGATACACTGT+CGG - chr1_2:68695303-68695322 None:intergenic 35.0%
!! TAGCATGTACTTAGCTCTAA+TGG + chr1_2:68695382-68695401 Msa0087760:intron 35.0%
TCAACTTTGCATCTTAAGCA+AGG + chr1_2:68695709-68695728 Msa0087760:intron 35.0%
AAGCAAGGCAATAATAGCAT+TGG + chr1_2:68695724-68695743 Msa0087760:intron 35.0%
! GCAATAATAGCATTGGAGAA+TGG + chr1_2:68695731-68695750 Msa0087760:intron 35.0%
ATGTTAAGTGGCTGACAATA+AGG - chr1_2:68695816-68695835 None:intergenic 35.0%
GAGATCTGATGTATCGAAAA+AGG - chr1_2:68691653-68691672 None:intergenic 35.0%
TTCGATACATCAGATCTCTA+CGG + chr1_2:68691655-68691674 Msa0087760:CDS 35.0%
! TTTGGCGTTACTTTATCTGA+TGG + chr1_2:68692028-68692047 Msa0087760:CDS 35.0%
! TTTATCTGATGGCATGGTTT+TGG + chr1_2:68696570-68696589 Msa0087760:CDS 35.0%
! TTATCTGATGGCATGGTTTT+GGG + chr1_2:68696571-68696590 Msa0087760:CDS 35.0%
CAATATACTTGACATCAAGC+CGG - chr1_2:68696648-68696667 None:intergenic 35.0%
ACTAAGTGTAGTACTAGTAG+AGG - chr1_2:68696740-68696759 None:intergenic 35.0%
ATTGACCTCTTTATGGAAGA+TGG + chr1_2:68696816-68696835 Msa0087760:intron 35.0%
AGTTCATCCTATTACTGCTT+TGG + chr1_2:68692381-68692400 Msa0087760:CDS 35.0%
!! TCCTATTACTGCTTTGGAAA+TGG + chr1_2:68696933-68696952 Msa0087760:CDS 35.0%
TCCATTTCCAAAGCAGTAAT+AGG - chr1_2:68696937-68696956 None:intergenic 35.0%
! TGGAAATGGAGTATTCCTTA+TGG + chr1_2:68696947-68696966 Msa0087760:CDS 35.0%
AAGAAATAATTCCACTCTGC+AGG + chr1_2:68692440-68692459 Msa0087760:CDS 35.0%
CAATTAATATACCTGCAGAG+TGG - chr1_2:68697000-68697019 None:intergenic 35.0%
! ATTTTTCCTCACTTCAGGAA+TGG - chr1_2:68697306-68697325 None:intergenic 35.0%
AATAACATTGATGAGCTTGC+TGG + chr1_2:68697361-68697380 Msa0087760:intron 35.0%
ATTCAAAAGAAAATCCCTGC+AGG - chr1_2:68697495-68697514 None:intergenic 35.0%
CTATGAACGAATCAATGACT+TGG + chr1_2:68697592-68697611 Msa0087760:CDS 35.0%
CATGCTAATGCTAATTGAGA+AGG - chr1_2:68693047-68693066 None:intergenic 35.0%
CTTCTCAATTAGCATTAGCA+TGG + chr1_2:68693045-68693064 Msa0087760:CDS 35.0%
GATAAATAAAGGCAGTACCA+GGG - chr1_2:68697694-68697713 None:intergenic 35.0%
AGATAAATAAAGGCAGTACC+AGG - chr1_2:68697695-68697714 None:intergenic 35.0%
!! AGTGATGGATATGTGAAAGT+AGG - chr1_2:68697868-68697887 None:intergenic 35.0%
TATCCATCACTAACTTTGCT+TGG + chr1_2:68697877-68697896 Msa0087760:intron 35.0%
TGCAGTATCTACACAGTATA+TGG - chr1_2:68697944-68697963 None:intergenic 35.0%
TCAGTTTAGTAGTCCCTATA+TGG - chr1_2:68698023-68698042 None:intergenic 35.0%
GCTTACACAAGAAGATTTGA+AGG + chr1_2:68698080-68698099 Msa0087760:CDS 35.0%
TCTCTATGCAATTACTTTGG+CGG - chr1_2:68698195-68698214 None:intergenic 35.0%
GTGGACATTTCAACAACCTT+TGG + chr1_2:68690672-68690691 Msa0087760:five_prime_UTR 40.0%
TAAAACCATGCCAAAGCCAA+AGG - chr1_2:68690691-68690710 None:intergenic 40.0%
CAAGTCCCAAGAGTTAAACT+GGG + chr1_2:68690800-68690819 Msa0087760:CDS 40.0%
GCTCATATGGAGAATGAAAG+TGG - chr1_2:68690850-68690869 None:intergenic 40.0%
TGATGAAGTGGTTGCTCATA+TGG - chr1_2:68690863-68690882 None:intergenic 40.0%
GGACTGAGAAAACAAAATGC+AGG - chr1_2:68691285-68691304 None:intergenic 40.0%
CTCATTGTGGAGAAAGCAAT+GGG - chr1_2:68691350-68691369 None:intergenic 40.0%
ACTCATTGTGGAGAAAGCAA+TGG - chr1_2:68691351-68691370 None:intergenic 40.0%
GTCCCATCTTTAACTCATTG+TGG - chr1_2:68691363-68691382 None:intergenic 40.0%
TTTGTGAAATGCAGGTGTCT+AGG + chr1_2:68691527-68691546 Msa0087760:intron 40.0%
TTTGGATGTGGAGGATTATC+TGG + chr1_2:68691556-68691575 Msa0087760:CDS 40.0%
CATCCCATTTGTCACATCTA+AGG - chr1_2:68691850-68691869 None:intergenic 40.0%
!!! AGCCAATTGAACTTTTTCGC+GGG - chr1_2:68692002-68692021 None:intergenic 40.0%
! TGGCGTTACTTTATCTGATG+GGG + chr1_2:68692030-68692049 Msa0087760:CDS 40.0%
! TTGGAACTGAAGTGTCAACT+CGG - chr1_2:68692153-68692172 None:intergenic 40.0%
AAGCTTACGGTGTCTTCAAT+TGG - chr1_2:68692172-68692191 None:intergenic 40.0%
! CGACTTGTTTATGAAGATGG+AGG + chr1_2:68692273-68692292 Msa0087760:intron 40.0%
GATGGAGGAGCTTAAAAAAC+TGG + chr1_2:68692288-68692307 Msa0087760:intron 40.0%
GATAAGACATATTGGGCTGT+CGG + chr1_2:68692324-68692343 Msa0087760:CDS 40.0%
TTGCATTCTTGCAGAGAACT+AGG + chr1_2:68692625-68692644 Msa0087760:intron 40.0%
TGCATTCTTGCAGAGAACTA+GGG + chr1_2:68692626-68692645 Msa0087760:intron 40.0%
! CGGCTAGTTACAAGTAATCA+AGG + chr1_2:68692741-68692760 Msa0087760:intron 40.0%
TGGGATGCATATTCTGTTAC+AGG - chr1_2:68692944-68692963 None:intergenic 40.0%
TGTAACAGAATATGCATCCC+AGG + chr1_2:68692943-68692962 Msa0087760:intron 40.0%
AGATTTACTCCAGTGAACCT+GGG - chr1_2:68692963-68692982 None:intergenic 40.0%
AATGACATAATCCCTATCCC+CGG + chr1_2:68693083-68693102 Msa0087760:CDS 40.0%
CTTCACTTTAGTAGTCCCTA+TGG - chr1_2:68693444-68693463 None:intergenic 40.0%
! AAGTGAAAAGGGCACAGTTA+AGG + chr1_2:68693690-68693709 Msa0087760:intron 40.0%
! AGTGAAAAGGGCACAGTTAA+GGG + chr1_2:68693691-68693710 Msa0087760:intron 40.0%
TGCTACCTATCAACTGGTAT+CGG + chr1_2:68693959-68693978 Msa0087760:intron 40.0%
! TAAGAGGGTACATGAAAGCA+CGG + chr1_2:68694017-68694036 Msa0087760:intron 40.0%
! GACATAGACGTCTTTGTTGT+CGG - chr1_2:68694180-68694199 None:intergenic 40.0%
AAAGACGTCTATGTCAACCA+TGG + chr1_2:68694185-68694204 Msa0087760:CDS 40.0%
AAGACGTCTATGTCAACCAT+GGG + chr1_2:68694186-68694205 Msa0087760:CDS 40.0%
CACCATATGTTCTCACTTCT+GGG + chr1_2:68694349-68694368 Msa0087760:intron 40.0%
GAATAAACGCACAGACATGA+AGG + chr1_2:68694413-68694432 Msa0087760:intron 40.0%
TTCAGTTGATTGCTTTGTCG+AGG - chr1_2:68694824-68694843 None:intergenic 40.0%
!! AGCAAAAGTTTTTGGGGAGT+TGG + chr1_2:68695608-68695627 Msa0087760:intron 40.0%
TTAAGTGGCTGACAATAAGG+AGG - chr1_2:68695813-68695832 None:intergenic 40.0%
TTTGGATGTGGAGGATTATC+TGG + chr1_2:68691556-68691575 Msa0087760:CDS 40.0%
ACATCCATCTTCATGTGAGA+GGG - chr1_2:68696120-68696139 None:intergenic 40.0%
AACATCCATCTTCATGTGAG+AGG - chr1_2:68696121-68696140 None:intergenic 40.0%
!!! TAGCCAATTGGACTTTTTCG+CGG - chr1_2:68696534-68696553 None:intergenic 40.0%
! CGTTACTTTATCTGATGGCA+TGG + chr1_2:68696564-68696583 Msa0087760:CDS 40.0%
!! TATCTGATGGCATGGTTTTG+GGG + chr1_2:68696572-68696591 Msa0087760:CDS 40.0%
CACCGAGAATTTACAAGTGT+TGG - chr1_2:68696781-68696800 None:intergenic 40.0%
AGAGCTTGACATTGGAATTG+TGG + chr1_2:68697088-68697107 Msa0087760:CDS 40.0%
!!! CTTTTTTGCAGGAAAGTCAG+TGG + chr1_2:68697133-68697152 Msa0087760:CDS 40.0%
TTACTTCCATTCCTGAAGTG+AGG + chr1_2:68697297-68697316 Msa0087760:intron 40.0%
TGAATTAGTTCCATTCCTGC+AGG + chr1_2:68697477-68697496 Msa0087760:intron 40.0%
GAATTAGTTCCATTCCTGCA+GGG + chr1_2:68697478-68697497 Msa0087760:intron 40.0%
AAAGAAAATCCCTGCAGGAA+TGG - chr1_2:68697490-68697509 None:intergenic 40.0%
!! AACAACCTTTGGCTTTGGCA+TGG + chr1_2:68690683-68690702 Msa0087760:five_prime_UTR 45.0%
GCAAGTCCCAAGAGTTAAAC+TGG + chr1_2:68690799-68690818 Msa0087760:CDS 45.0%
GGCTACCCAGTTTAACTCTT+GGG - chr1_2:68690808-68690827 None:intergenic 45.0%
TGGCTACCCAGTTTAACTCT+TGG - chr1_2:68690809-68690828 None:intergenic 45.0%
AGAGTTAAACTGGGTAGCCA+TGG + chr1_2:68690809-68690828 Msa0087760:CDS 45.0%
AGCCATGGTTTAGAGGTAAG+TGG + chr1_2:68690824-68690843 Msa0087760:intron 45.0%
! TGTTTTCTTCGCCGTAGTGT+TGG - chr1_2:68690919-68690938 None:intergenic 45.0%
TGAAATGCAGGTGTCTAGGT+TGG + chr1_2:68691531-68691550 Msa0087760:intron 45.0%
GAAATGCAGGTGTCTAGGTT+GGG + chr1_2:68691532-68691551 Msa0087760:intron 45.0%
! TCTAGGTTGGGATTTGGATG+TGG + chr1_2:68691544-68691563 Msa0087760:CDS 45.0%
ACATCCATCTTCATGGGAGA+GGG - chr1_2:68691596-68691615 None:intergenic 45.0%
AACATCCATCTTCATGGGAG+AGG - chr1_2:68691597-68691616 None:intergenic 45.0%
TCCCCGCGAAAAAGTTCAAT+TGG + chr1_2:68691997-68692016 Msa0087760:CDS 45.0%
!!! GCCAATTGAACTTTTTCGCG+GGG - chr1_2:68692001-68692020 None:intergenic 45.0%
! AAGGTACCCCTGAATATGTG+AGG + chr1_2:68692065-68692084 Msa0087760:CDS 45.0%
AGGTACCCCTGAATATGTGA+GGG + chr1_2:68692066-68692085 Msa0087760:CDS 45.0%
AGCACTCCCTCACATATTCA+GGG - chr1_2:68692075-68692094 None:intergenic 45.0%
TTCAATGTCACGGGACCATA+AGG - chr1_2:68692419-68692438 None:intergenic 45.0%
CAATTTGTCTACCTGCAGAG+TGG - chr1_2:68692454-68692473 None:intergenic 45.0%
TCTTGCAGAGAACTAGGGAT+TGG + chr1_2:68692631-68692650 Msa0087760:intron 45.0%
ATAGTAGCATATAGCCCCCT+TGG + chr1_2:68692655-68692674 Msa0087760:CDS 45.0%
!!! CGGCTTTTTTGCAGGAAAGT+CGG + chr1_2:68692681-68692700 Msa0087760:CDS 45.0%
!!! CTTTTTTGCAGGAAAGTCGG+TGG + chr1_2:68692684-68692703 Msa0087760:CDS 45.0%
GATAAGGTTCAGGCAAGTTG+TGG + chr1_2:68692829-68692848 Msa0087760:intron 45.0%
TGGAATTACATCTCTGCCGA+GGG + chr1_2:68692849-68692868 Msa0087760:intron 45.0%
CTGCAGGGATAATACTACTC+AGG - chr1_2:68692893-68692912 None:intergenic 45.0%
AATATGCATCCCAGGTTCAC+TGG + chr1_2:68692951-68692970 Msa0087760:CDS 45.0%
CAGATTTACTCCAGTGAACC+TGG - chr1_2:68692964-68692983 None:intergenic 45.0%
CAGGTTCACTGGAGTAAATC+TGG + chr1_2:68692962-68692981 Msa0087760:CDS 45.0%
ATTAGCATGGCTTCTGCATC+AGG + chr1_2:68693058-68693077 Msa0087760:CDS 45.0%
TTAGCATGGCTTCTGCATCA+GGG + chr1_2:68693059-68693078 Msa0087760:CDS 45.0%
! TTAAGACAGTACCGGGGATA+GGG - chr1_2:68693097-68693116 None:intergenic 45.0%
! ATTAAGACAGTACCGGGGAT+AGG - chr1_2:68693098-68693117 None:intergenic 45.0%
TTCTGATGCAGTTCCTGTTG+CGG + chr1_2:68693526-68693545 Msa0087760:CDS 45.0%
TTGCTCCGATACCAGTTGAT+AGG - chr1_2:68693967-68693986 None:intergenic 45.0%
! AACTGGTATCGGAGCAATCA+AGG + chr1_2:68693970-68693989 Msa0087760:intron 45.0%
TATCGGAGCAATCAAGGTCT+CGG + chr1_2:68693976-68693995 Msa0087760:intron 45.0%
!!! CAAGGTCTCGGTTGTTTTGA+TGG + chr1_2:68693988-68694007 Msa0087760:intron 45.0%
GCAGACTGTTTGCTTTAGTC+AGG + chr1_2:68694127-68694146 Msa0087760:intron 45.0%
AGGACAACTCGTAGAACGAA+GGG + chr1_2:68694147-68694166 Msa0087760:intron 45.0%
TAGGTGTCTTCTCACTGATG+TGG - chr1_2:68694215-68694234 None:intergenic 45.0%
CCAGAAGTGAGAACATATGG+TGG - chr1_2:68694351-68694370 None:intergenic 45.0%
CCACCATATGTTCTCACTTC+TGG + chr1_2:68694348-68694367 Msa0087760:intron 45.0%
GTCCCAGAAGTGAGAACATA+TGG - chr1_2:68694354-68694373 None:intergenic 45.0%
GGTTATATTCCCTCTGAGCA+TGG - chr1_2:68694627-68694646 None:intergenic 45.0%
! TAGACGTGGCATTTTGCATG+TGG + chr1_2:68695041-68695060 Msa0087760:intron 45.0%
ATCCTTGAATGTATGAGGCG+CGG + chr1_2:68695073-68695092 Msa0087760:intron 45.0%
TACACTGTCGGTATAGTCTC+TGG - chr1_2:68695291-68695310 None:intergenic 45.0%
TTATAACATCGTGGCAGGCT+TGG + chr1_2:68695420-68695439 Msa0087760:intron 45.0%
!!! AGTTTTTGGGGAGTTGGTAC+TGG + chr1_2:68695614-68695633 Msa0087760:intron 45.0%
ACAAGTCCCAAGAGTCAAAC+TGG + chr1_2:68695758-68695777 Msa0087760:intron 45.0%
CAAGTCCCAAGAGTCAAACT+GGG + chr1_2:68695759-68695778 Msa0087760:intron 45.0%
TTTGTGGAATGCAGGTGTCT+AGG + chr1_2:68696051-68696070 Msa0087760:intron 45.0%
! TCTAGGTTGGGATTTGGATG+TGG + chr1_2:68691544-68691563 Msa0087760:CDS 45.0%
CATCCATCTTCATGTGAGAG+GGG - chr1_2:68696119-68696138 None:intergenic 45.0%
!!! AGCCAATTGGACTTTTTCGC+GGG - chr1_2:68696533-68696552 None:intergenic 45.0%
GTCCAATTGGCTACGAAGTT+TGG + chr1_2:68696541-68696560 Msa0087760:CDS 45.0%
!!! ATCTGATGGCATGGTTTTGG+GGG + chr1_2:68696573-68696592 Msa0087760:CDS 45.0%
! AAGGTACCCCTGAATATGTG+AGG + chr1_2:68692065-68692084 Msa0087760:CDS 45.0%
AGGTACCCCTGAATATGTGA+GGG + chr1_2:68692066-68692085 Msa0087760:CDS 45.0%
AGCACTCCCTCACATATTCA+GGG - chr1_2:68692075-68692094 None:intergenic 45.0%
GACCTCTTTATGGAAGATGG+AGG + chr1_2:68696819-68696838 Msa0087760:intron 45.0%
CTCCTCCATCTTCCATAAAG+AGG - chr1_2:68696824-68696843 None:intergenic 45.0%
TTCAATGTCACGGGACCATA+AGG - chr1_2:68692419-68692438 None:intergenic 45.0%
ACTTGCAGAGAGCTTGACAT+TGG + chr1_2:68697080-68697099 Msa0087760:intron 45.0%
TTTGTCTAGTCAGAGCTTGC+TGG + chr1_2:68697163-68697182 Msa0087760:CDS 45.0%
CATAACAGGCTATGCATCCA+AGG + chr1_2:68697534-68697553 Msa0087760:intron 45.0%
GCTATGCATCCAAGGTTTAC+AGG + chr1_2:68697542-68697561 Msa0087760:CDS 45.0%
ATTAGCATGGCTTCTGCATC+AGG + chr1_2:68693058-68693077 Msa0087760:CDS 45.0%
TTAGCATGGCTTCTGCATCA+GGG + chr1_2:68693059-68693078 Msa0087760:CDS 45.0%
AACGACATAATCCCTATCCC+TGG + chr1_2:68697674-68697693 Msa0087760:CDS 45.0%
TAAAGGCAGTACCAGGGATA+GGG - chr1_2:68697688-68697707 None:intergenic 45.0%
ATAAAGGCAGTACCAGGGAT+AGG - chr1_2:68697689-68697708 None:intergenic 45.0%
GTGCCAAGCAAAGTTAGTGA+TGG - chr1_2:68697883-68697902 None:intergenic 45.0%
TTCCCGTTGAGGAAATTGCT+GGG + chr1_2:68698118-68698137 Msa0087760:CDS 45.0%
AATTACGATGCCTCCCTAGT+AGG + chr1_2:68698420-68698439 Msa0087760:three_prime_UTR 45.0%
ACTGGGTAGCCATGGTTTAG+AGG + chr1_2:68690817-68690836 Msa0087760:CDS 50.0%
GGCCACTTACCTCTAAACCA+TGG - chr1_2:68690829-68690848 None:intergenic 50.0%
! CAGGTGTCTAGGTTGGGATT+TGG + chr1_2:68691538-68691557 Msa0087760:intron 50.0%
AGGTTGGGATTTGGATGTGG+AGG + chr1_2:68691547-68691566 Msa0087760:CDS 50.0%
CATCCATCTTCATGGGAGAG+GGG - chr1_2:68691595-68691614 None:intergenic 50.0%
GCACTCCCTCACATATTCAG+GGG - chr1_2:68692074-68692093 None:intergenic 50.0%
CAGCACTCCCTCACATATTC+AGG - chr1_2:68692076-68692095 None:intergenic 50.0%
TGCAAAAAAGCCGCAGCCAA+GGG - chr1_2:68692674-68692693 None:intergenic 50.0%
TTTGCCTAGTCAGAGCGTAC+TGG + chr1_2:68692714-68692733 Msa0087760:CDS 50.0%
CATACCAGTACGCTCTGACT+AGG - chr1_2:68692721-68692740 None:intergenic 50.0%
! AGTCAGAGCGTACTGGTATG+CGG + chr1_2:68692721-68692740 Msa0087760:intron 50.0%
GTGGAATTACATCTCTGCCG+AGG + chr1_2:68692848-68692867 Msa0087760:intron 50.0%
TTCCTGTTGCGGAAATCGCT+GGG + chr1_2:68693537-68693556 Msa0087760:CDS 50.0%
! GAAAAGGGCACAGTTAAGGG+TGG + chr1_2:68693694-68693713 Msa0087760:intron 50.0%
GGCACAGTTAAGGGTGGTTA+GGG + chr1_2:68693700-68693719 Msa0087760:intron 50.0%
GCACAGTTAAGGGTGGTTAG+GGG + chr1_2:68693701-68693720 Msa0087760:intron 50.0%
CAGGACAACTCGTAGAACGA+AGG + chr1_2:68694146-68694165 Msa0087760:intron 50.0%
CTCACTGATGTGGATTCCCA+TGG - chr1_2:68694205-68694224 None:intergenic 50.0%
AACCGCGCCTCATACATTCA+AGG - chr1_2:68695078-68695097 None:intergenic 50.0%
!! TGGTAGTAGTGCTGACTGAG+TGG + chr1_2:68695634-68695653 Msa0087760:intron 50.0%
GGGTACCCAGTTTGACTCTT+GGG - chr1_2:68695767-68695786 None:intergenic 50.0%
TGGGTACCCAGTTTGACTCT+TGG - chr1_2:68695768-68695787 None:intergenic 50.0%
AGAGTCAAACTGGGTACCCA+AGG + chr1_2:68695768-68695787 Msa0087760:intron 50.0%
ACTGGGTACCCAAGGTTTAG+AGG + chr1_2:68695776-68695795 Msa0087760:intron 50.0%
TGGAATGCAGGTGTCTAGGT+TGG + chr1_2:68696055-68696074 Msa0087760:intron 50.0%
GGAATGCAGGTGTCTAGGTT+GGG + chr1_2:68696056-68696075 Msa0087760:intron 50.0%
! CAGGTGTCTAGGTTGGGATT+TGG + chr1_2:68691538-68691557 Msa0087760:intron 50.0%
AGGTTGGGATTTGGATGTGG+AGG + chr1_2:68691547-68691566 Msa0087760:CDS 50.0%
TCCCCGCGAAAAAGTCCAAT+TGG + chr1_2:68696528-68696547 Msa0087760:CDS 50.0%
!!! GCCAATTGGACTTTTTCGCG+GGG - chr1_2:68696532-68696551 None:intergenic 50.0%
CGCCAAACTTCGTAGCCAAT+TGG - chr1_2:68696546-68696565 None:intergenic 50.0%
!!! GGCATGGTTTTGGGGGTAAA+AGG + chr1_2:68696580-68696599 Msa0087760:CDS 50.0%
GCACTCCCTCACATATTCAG+GGG - chr1_2:68692074-68692093 None:intergenic 50.0%
CAGCACTCCCTCACATATTC+AGG - chr1_2:68692076-68692095 None:intergenic 50.0%
! GCTGTGAAGCTAGTCTCAAC+CGG + chr1_2:68696626-68696645 Msa0087760:CDS 50.0%
TGCAAAAAAGCCGCGACCAA+GGG - chr1_2:68697123-68697142 None:intergenic 50.0%
TGCAGGAAAGTCAGTGGTAG+AGG + chr1_2:68697139-68697158 Msa0087760:CDS 50.0%
!! TTCTGAAGCAGTTCCCGTTG+AGG + chr1_2:68698107-68698126 Msa0087760:CDS 50.0%
GTTCCCGTTGAGGAAATTGC+TGG + chr1_2:68698117-68698136 Msa0087760:CDS 50.0%
TCCCGTTGAGGAAATTGCTG+GGG + chr1_2:68698119-68698138 Msa0087760:CDS 50.0%
TCCCCAGCAATTTCCTCAAC+GGG - chr1_2:68698123-68698142 None:intergenic 50.0%
CTCCCCAGCAATTTCCTCAA+CGG - chr1_2:68698124-68698143 None:intergenic 50.0%
GCTGTGAAGCGAGTCTCAAG+CGG + chr1_2:68692092-68692111 Msa0087760:CDS 55.0%
CAAAAAAGCCGCAGCCAAGG+GGG - chr1_2:68692672-68692691 None:intergenic 55.0%
GCAAAAAAGCCGCAGCCAAG+GGG - chr1_2:68692673-68692692 None:intergenic 55.0%
CTGCAAAAAAGCCGCAGCCA+AGG - chr1_2:68692675-68692694 None:intergenic 55.0%
!!! CTTGGCTGCGGCTTTTTTGC+AGG + chr1_2:68692673-68692692 Msa0087760:CDS 55.0%
TGCAGGAAAGTCGGTGGTAG+AGG + chr1_2:68692690-68692709 Msa0087760:CDS 55.0%
GTTCCTGTTGCGGAAATCGC+TGG + chr1_2:68693536-68693555 Msa0087760:CDS 55.0%
TTCCCAGCGATTTCCGCAAC+AGG - chr1_2:68693542-68693561 None:intergenic 55.0%
GGGCACAGTTAAGGGTGGTT+AGG + chr1_2:68693699-68693718 Msa0087760:intron 55.0%
TTTGGCAAGGCCATGCTCAG+AGG + chr1_2:68694614-68694633 Msa0087760:intron 55.0%
TTGGCAAGGCCATGCTCAGA+GGG + chr1_2:68694615-68694634 Msa0087760:intron 55.0%
GCTCCCCTCTCACATGAAGA+TGG + chr1_2:68696113-68696132 Msa0087760:CDS 55.0%
ATTGTGGCATACAGCCCCCT+TGG + chr1_2:68697104-68697123 Msa0087760:CDS 55.0%
CAAAAAAGCCGCGACCAAGG+GGG - chr1_2:68697121-68697140 None:intergenic 55.0%
GCAAAAAAGCCGCGACCAAG+GGG - chr1_2:68697122-68697141 None:intergenic 55.0%
CTGCAAAAAAGCCGCGACCA+AGG - chr1_2:68697124-68697143 None:intergenic 55.0%
!!! CTTGGTCGCGGCTTTTTTGC+AGG + chr1_2:68697122-68697141 Msa0087760:CDS 55.0%
GCTCCCCTCTCCCATGAAGA+TGG + chr1_2:68691589-68691608 Msa0087760:CDS 60.0%
ATTGGGCTGTCGGACGCTAG+TGG + chr1_2:68692334-68692353 Msa0087760:CDS 60.0%
GCATATAGCCCCCTTGGCTG+CGG + chr1_2:68692661-68692680 Msa0087760:CDS 60.0%
GCATACAGCCCCCTTGGTCG+CGG + chr1_2:68697110-68697129 Msa0087760:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 68690664 68698444 68690664 ID=Msa0087760;Name=Msa0087760
chr1_2 mRNA 68690664 68698444 68690664 ID=Msa0087760-mRNA-1;Parent=Msa0087760;Name=Msa0087760-mRNA-1;_AED=0.25;_eAED=0.25;_QI=118|0.84|0.85|1|1|1|14|241|710
chr1_2 exon 68690664 68690838 68690664 ID=Msa0087760-mRNA-1:exon:23553;Parent=Msa0087760-mRNA-1
chr1_2 exon 68691541 68691711 68691541 ID=Msa0087760-mRNA-1:exon:23554;Parent=Msa0087760-mRNA-1
chr1_2 exon 68691983 68692183 68691983 ID=Msa0087760-mRNA-1:exon:23555;Parent=Msa0087760-mRNA-1
chr1_2 exon 68692289 68692461 68692289 ID=Msa0087760-mRNA-1:exon:23556;Parent=Msa0087760-mRNA-1
chr1_2 exon 68692639 68692735 68692639 ID=Msa0087760-mRNA-1:exon:23557;Parent=Msa0087760-mRNA-1
chr1_2 exon 68692951 68693104 68692951 ID=Msa0087760-mRNA-1:exon:23558;Parent=Msa0087760-mRNA-1
chr1_2 exon 68693447 68693618 68693447 ID=Msa0087760-mRNA-1:exon:23559;Parent=Msa0087760-mRNA-1
chr1_2 exon 68694149 68694281 68694149 ID=Msa0087760-mRNA-1:exon:23560;Parent=Msa0087760-mRNA-1
chr1_2 exon 68696065 68696235 68696065 ID=Msa0087760-mRNA-1:exon:23561;Parent=Msa0087760-mRNA-1
chr1_2 exon 68696514 68696717 68696514 ID=Msa0087760-mRNA-1:exon:23562;Parent=Msa0087760-mRNA-1
chr1_2 exon 68696835 68697007 68696835 ID=Msa0087760-mRNA-1:exon:23563;Parent=Msa0087760-mRNA-1
chr1_2 exon 68697088 68697184 68697088 ID=Msa0087760-mRNA-1:exon:23564;Parent=Msa0087760-mRNA-1
chr1_2 exon 68697542 68697695 68697542 ID=Msa0087760-mRNA-1:exon:23565;Parent=Msa0087760-mRNA-1
chr1_2 exon 68698028 68698444 68698028 ID=Msa0087760-mRNA-1:exon:23566;Parent=Msa0087760-mRNA-1
chr1_2 five_prime_UTR 68690664 68690781 68690664 ID=Msa0087760-mRNA-1:five_prime_utr;Parent=Msa0087760-mRNA-1
chr1_2 CDS 68690782 68690838 68690782 ID=Msa0087760-mRNA-1:cds;Parent=Msa0087760-mRNA-1
chr1_2 CDS 68691541 68691711 68691541 ID=Msa0087760-mRNA-1:cds;Parent=Msa0087760-mRNA-1
chr1_2 CDS 68691983 68692183 68691983 ID=Msa0087760-mRNA-1:cds;Parent=Msa0087760-mRNA-1
chr1_2 CDS 68692289 68692461 68692289 ID=Msa0087760-mRNA-1:cds;Parent=Msa0087760-mRNA-1
chr1_2 CDS 68692639 68692735 68692639 ID=Msa0087760-mRNA-1:cds;Parent=Msa0087760-mRNA-1
chr1_2 CDS 68692951 68693104 68692951 ID=Msa0087760-mRNA-1:cds;Parent=Msa0087760-mRNA-1
chr1_2 CDS 68693447 68693618 68693447 ID=Msa0087760-mRNA-1:cds;Parent=Msa0087760-mRNA-1
chr1_2 CDS 68694149 68694281 68694149 ID=Msa0087760-mRNA-1:cds;Parent=Msa0087760-mRNA-1
chr1_2 CDS 68696065 68696235 68696065 ID=Msa0087760-mRNA-1:cds;Parent=Msa0087760-mRNA-1
chr1_2 CDS 68696514 68696717 68696514 ID=Msa0087760-mRNA-1:cds;Parent=Msa0087760-mRNA-1
chr1_2 CDS 68696835 68697007 68696835 ID=Msa0087760-mRNA-1:cds;Parent=Msa0087760-mRNA-1
chr1_2 CDS 68697088 68697184 68697088 ID=Msa0087760-mRNA-1:cds;Parent=Msa0087760-mRNA-1
chr1_2 CDS 68697542 68697695 68697542 ID=Msa0087760-mRNA-1:cds;Parent=Msa0087760-mRNA-1
chr1_2 CDS 68698028 68698203 68698028 ID=Msa0087760-mRNA-1:cds;Parent=Msa0087760-mRNA-1
chr1_2 three_prime_UTR 68698204 68698444 68698204 ID=Msa0087760-mRNA-1:three_prime_utr;Parent=Msa0087760-mRNA-1
Gene Sequence

>Msa0087760

ATGGATAACACTGAGATGCAAGTCCCAAGAGTTAAACTGGGTAGCCATGGTTTAGAGGTGTCTAGGTTGGGATTTGGATGTGGAGGATTATCTGGAATTTTTAATGCTCCCCTCTCCCATGAAGATGGATGTTCAATTATTAAGGAAGTATTCAATAGAGGGGTTACCTTTTTCGATACATCAGATCTCTACGGACACAAACATGATAATGAAATCATGGTTGGTAAGGCATTAAAAGAACTTCCCCGCGAAAAAGTTCAATTGGCTACAAAGTTTGGCGTTACTTTATCTGATGGGGTTTTTAGAGTAAAAGGTACCCCTGAATATGTGAGGGAGTGCTGTGAAGCGAGTCTCAAGCGGCTTGATGTCAATTATATTGACTTATACTATCAACACCGAGTTGACACTTCAGTTCCAATTGAAGACACCATGGAGGAGCTTAAAAAACTGGTAAATGAAGGAAAGATAAGACATATTGGGCTGTCGGACGCTAGTGGCGACACTATAAAGAGAGCACACGCAGTTCATCCTATTACTGCTTTGCAAATGGAGTATTCCTTATGGTCCCGTGACATTGAAGAAGAAATAATTCCACTCTGCAGAGAACTAGGGATTGGAATAGTAGCATATAGCCCCCTTGGCTGCGGCTTTTTTGCAGGAAAGTCGGTGGTAGAGGCTTTGCCTAGTCAGAGCGTACTGAATATGCATCCCAGGTTCACTGGAGTAAATCTGGAAAAGAACAAGATAATCTATGAACGAATCAATGTATTGGCTTCAAAGCATGCATGCACTCCTTCTCAATTAGCATTAGCATGGCTTCTGCATCAGGGAAATGACATAATCCCTATCCCCGGGACTACTAAAGTGAAGAACTTTGAAAACAACATTGGATCTCTGATTGTAAAGCTTACAGAAGAAGATTTGAAAGAAATTTCTGATGCAGTTCCTGTTGCGGAAATCGCTGGGAATCTAGAAAATCACAGTTTGTCGCAATATAGTTGGAAGTTTGCAACTACGCCGCCAAAGACAACTCGTAGAACGAAGGGATACACTCCGACAACAAAGACGTCTATGTCAACCATGGGAATCCACATCAGTGAGAAGACACCTATGCTTCACAGATATACTATATCGTTTAGAAACTTAGACATGCTTAAAGTGTCTAGGTTGGGATTTGGATGTGGAGGATTATCTGGAATTTATAATGCTCCCCTCTCACATGAAGATGGATGTTCAATTATTAAGGAAGTATTCAATAGAGGGGTTACCTTTTTCGATACATCAGATCTCTACGGACACAAACATGATAATGAAATCATGGTTGGTAAGGCATTAAAAGAACTTCCCCGCGAAAAAGTCCAATTGGCTACGAAGTTTGGCGTTACTTTATCTGATGGCATGGTTTTGGGGGTAAAAGGTACCCCTGAATATGTGAGGGAGTGCTGTGAAGCTAGTCTCAACCGGCTTGATGTCAAGTATATTGATTTATACTATCAACACAGAGTTGACACTTCAATTCCAATTGAAGAAACTATGGAGGAGCTCAAACAACTTGTAAATGAAGGAAAGATAAAATATATTGGGTTGTCAGAGGCTAATGCTGACACTATAAAGAGAGCACATGCAGTTCATCCTATTACTGCTTTGGAAATGGAGTATTCCTTATGGTCCCGTGACATTGAAGAAGAAATAATTCCACTCTGCAGAGAGCTTGACATTGGAATTGTGGCATACAGCCCCCTTGGTCGCGGCTTTTTTGCAGGAAAGTCAGTGGTAGAGGCTTTGTCTAGTCAGAGCTTGCTGGCTATGCATCCAAGGTTTACAGGAGAAAATTTGGAAAAGAACAAGCTTTTCTATGAACGAATCAATGACTTGGCTTCAAAGCATGCATGTACTCCTTCTCAATTAGCATTAGCATGGCTTCTGCATCAGGGAAACGACATAATCCCTATCCCTGGGACTACTAAACTGAAGAACTTTGAAAACAACATTGGATCTCTGAATGTGAAGCTTACACAAGAAGATTTGAAGGAAATTTCTGAAGCAGTTCCCGTTGAGGAAATTGCTGGGGAGCGAGAATATGATAGTATATCACAATATCTTTGGAAATTTGCAACTACGCCGCCAAAGTAA
Protein sequence

>Msa0087760

MDNTEMQVPRVKLGSHGLEVSRLGFGCGGLSGIFNAPLSHEDGCSIIKEVFNRGVTFFDTSDLYGHKHDNEIMVGKALKELPREKVQLATKFGVTLSDGVFRVKGTPEYVRECCEASLKRLDVNYIDLYYQHRVDTSVPIEDTMEELKKLVNEGKIRHIGLSDASGDTIKRAHAVHPITALQMEYSLWSRDIEEEIIPLCRELGIGIVAYSPLGCGFFAGKSVVEALPSQSVLNMHPRFTGVNLEKNKIIYERINVLASKHACTPSQLALAWLLHQGNDIIPIPGTTKVKNFENNIGSLIVKLTEEDLKEISDAVPVAEIAGNLENHSLSQYSWKFATTPPKTTRRTKGYTPTTKTSMSTMGIHISEKTPMLHRYTISFRNLDMLKVSRLGFGCGGLSGIYNAPLSHEDGCSIIKEVFNRGVTFFDTSDLYGHKHDNEIMVGKALKELPREKVQLATKFGVTLSDGMVLGVKGTPEYVRECCEASLNRLDVKYIDLYYQHRVDTSIPIEETMEELKQLVNEGKIKYIGLSEANADTIKRAHAVHPITALEMEYSLWSRDIEEEIIPLCRELDIGIVAYSPLGRGFFAGKSVVEALSSQSLLAMHPRFTGENLEKNKLFYERINDLASKHACTPSQLALAWLLHQGNDIIPIPGTTKLKNFENNIGSLNVKLTQEDLKEISEAVPVEEIAGEREYDSISQYLWKFATTPPK*