Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0088570 | KEH43900.1 | 96.429 | 112 | 4 | 0 | 56 | 167 | 1 | 112 | 2.03e-70 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0088570 | sp|Q9SRH9|SNL1_ARATH | 46.316 | 95 | 49 | 1 | 59 | 151 | 47 | 141 | 7.98e-18 | 83.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0088570 | A0A072W0U6 | 96.429 | 112 | 4 | 0 | 56 | 167 | 1 | 112 | 9.69e-71 | 218 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0088570 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0088570 | Msa0106370 | -0.818580 | 1.820163e-52 | -8.615850e-47 |
| Msa0088570 | Msa0531970 | -0.808116 | 3.627773e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0088570 | MtrunA17_Chr1g0205801 | 96.429 | 112 | 4 | 0 | 56 | 167 | 1 | 112 | 1.87e-74 | 218 |
| Msa0088570 | MtrunA17_Chr1g0205811 | 62.376 | 101 | 36 | 1 | 56 | 154 | 1 | 101 | 4.81e-39 | 129 |
| Msa0088570 | MtrunA17_Chr1g0205821 | 55.357 | 112 | 47 | 1 | 59 | 167 | 5 | 116 | 7.72e-33 | 115 |
| Msa0088570 | MtrunA17_Chr1g0205821 | 59.459 | 74 | 30 | 0 | 68 | 141 | 100 | 173 | 9.91e-24 | 91.7 |
| Msa0088570 | MtrunA17_Chr1g0205831 | 61.765 | 68 | 26 | 0 | 69 | 136 | 4 | 71 | 4.09e-24 | 92.8 |
| Msa0088570 | MtrunA17_Chr1g0205831 | 55.128 | 78 | 35 | 0 | 69 | 146 | 75 | 152 | 6.32e-21 | 84.3 |
| Msa0088570 | MtrunA17_Chr1g0206781 | 47.436 | 78 | 41 | 0 | 68 | 145 | 12 | 89 | 3.94e-18 | 75.5 |
| Msa0088570 | MtrunA17_Chr8g0364231 | 48.718 | 78 | 40 | 0 | 65 | 142 | 40 | 117 | 8.74e-18 | 79.7 |
| Msa0088570 | MtrunA17_Chr5g0415031 | 42.500 | 80 | 46 | 0 | 65 | 144 | 41 | 120 | 2.72e-17 | 78.2 |
| Msa0088570 | MtrunA17_Chr6g0452001 | 47.436 | 78 | 41 | 0 | 65 | 142 | 61 | 138 | 5.34e-17 | 77.4 |
| Msa0088570 | MtrunA17_Chr3g0077881 | 50.602 | 83 | 40 | 1 | 65 | 146 | 6 | 88 | 9.23e-17 | 73.6 |
| Msa0088570 | MtrunA17_Chr3g0077891 | 53.333 | 75 | 34 | 1 | 65 | 138 | 6 | 80 | 1.10e-15 | 70.9 |
| Msa0088570 | MtrunA17_Chr3g0077891 | 43.421 | 76 | 42 | 1 | 67 | 141 | 99 | 174 | 5.92e-11 | 58.2 |
| Msa0088570 | MtrunA17_Chr6g0452021 | 43.023 | 86 | 48 | 1 | 67 | 152 | 43 | 127 | 1.12e-15 | 73.6 |
| Msa0088570 | MtrunA17_Chr1g0206771 | 50.000 | 72 | 36 | 0 | 68 | 139 | 17 | 88 | 1.15e-15 | 70.9 |
| Msa0088570 | MtrunA17_Chr1g0206771 | 47.826 | 69 | 36 | 0 | 67 | 135 | 95 | 163 | 2.91e-11 | 58.9 |
| Msa0088570 | MtrunA17_Chr3g0077941 | 51.613 | 93 | 40 | 2 | 65 | 152 | 6 | 98 | 2.92e-15 | 69.7 |
| Msa0088570 | MtrunA17_Chr1g0205861 | 48.718 | 78 | 37 | 1 | 67 | 144 | 16 | 90 | 1.29e-14 | 66.6 |
| Msa0088570 | MtrunA17_Chr7g0218891 | 43.038 | 79 | 43 | 1 | 60 | 136 | 6 | 84 | 3.11e-14 | 68.6 |
| Msa0088570 | MtrunA17_Chr4g0075861 | 39.394 | 99 | 60 | 0 | 67 | 165 | 89 | 187 | 6.09e-14 | 68.2 |
| Msa0088570 | MtrunA17_Chr4g0075861 | 44.286 | 70 | 39 | 0 | 70 | 139 | 175 | 244 | 4.17e-11 | 60.1 |
| Msa0088570 | MtrunA17_Chr4g0075971 | 38.384 | 99 | 61 | 0 | 67 | 165 | 89 | 187 | 2.62e-13 | 66.6 |
| Msa0088570 | MtrunA17_Chr4g0075971 | 44.286 | 70 | 39 | 0 | 70 | 139 | 175 | 244 | 1.31e-11 | 62.0 |
| Msa0088570 | MtrunA17_Chr8g0364021 | 36.364 | 99 | 61 | 1 | 41 | 137 | 16 | 114 | 5.88e-13 | 64.3 |
| Msa0088570 | MtrunA17_Chr3g0077911 | 41.379 | 87 | 48 | 1 | 66 | 152 | 7 | 90 | 3.83e-12 | 60.8 |
| Msa0088570 | MtrunA17_Chr3g0077911 | 50.000 | 66 | 32 | 1 | 65 | 129 | 88 | 153 | 9.99e-12 | 59.7 |
| Msa0088570 | MtrunA17_Chr7g0256011 | 40.580 | 69 | 41 | 0 | 67 | 135 | 16 | 84 | 3.37e-11 | 57.8 |
| Msa0088570 | MtrunA17_Chr3g0077861 | 48.485 | 66 | 33 | 1 | 65 | 129 | 88 | 153 | 6.63e-11 | 57.8 |
| Msa0088570 | MtrunA17_Chr3g0077811 | 44.000 | 75 | 41 | 1 | 65 | 138 | 11 | 85 | 6.86e-11 | 56.6 |
| Msa0088570 | MtrunA17_Chr6g0486601 | 40.698 | 86 | 42 | 3 | 69 | 145 | 16 | 101 | 7.28e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0088570 | AT3G01320.1 | 46.316 | 95 | 49 | 1 | 59 | 151 | 47 | 141 | 8.12e-19 | 83.2 |
| Msa0088570 | AT3G01320.2 | 46.316 | 95 | 49 | 1 | 59 | 151 | 47 | 141 | 8.27e-19 | 83.2 |
| Msa0088570 | AT5G15020.2 | 48.684 | 76 | 37 | 1 | 67 | 142 | 52 | 125 | 4.06e-15 | 72.4 |
| Msa0088570 | AT5G15020.1 | 48.684 | 76 | 37 | 1 | 67 | 142 | 52 | 125 | 4.34e-15 | 72.4 |
| Msa0088570 | AT1G70060.2 | 44.872 | 78 | 43 | 0 | 65 | 142 | 12 | 89 | 4.77e-15 | 72.4 |
| Msa0088570 | AT1G70060.1 | 44.872 | 78 | 43 | 0 | 65 | 142 | 12 | 89 | 4.77e-15 | 72.4 |
| Msa0088570 | AT1G24190.3 | 44.737 | 76 | 42 | 0 | 65 | 140 | 12 | 87 | 1.73e-14 | 70.9 |
| Msa0088570 | AT1G24190.2 | 44.737 | 76 | 42 | 0 | 65 | 140 | 12 | 87 | 1.80e-14 | 70.5 |
| Msa0088570 | AT1G24190.1 | 44.737 | 76 | 42 | 0 | 65 | 140 | 12 | 87 | 1.85e-14 | 70.5 |
| Msa0088570 | AT5G15040.1 | 46.753 | 77 | 39 | 1 | 65 | 141 | 1 | 75 | 5.07e-14 | 64.3 |
| Msa0088570 | AT5G15040.3 | 46.753 | 77 | 39 | 1 | 65 | 141 | 1 | 75 | 5.07e-14 | 64.3 |
| Msa0088570 | AT5G15040.2 | 46.753 | 77 | 39 | 1 | 65 | 141 | 1 | 75 | 5.07e-14 | 64.3 |
| Msa0088570 | AT5G15025.1 | 45.455 | 77 | 40 | 1 | 67 | 143 | 47 | 121 | 6.01e-14 | 65.1 |
| Msa0088570 | AT1G27220.1 | 42.466 | 73 | 42 | 0 | 63 | 135 | 10 | 82 | 1.34e-13 | 65.9 |
| Msa0088570 | AT1G24200.1 | 47.143 | 70 | 37 | 0 | 66 | 135 | 13 | 82 | 1.44e-13 | 65.9 |
| Msa0088570 | AT1G23810.1 | 38.636 | 88 | 53 | 1 | 60 | 147 | 102 | 188 | 1.62e-12 | 63.5 |
| Msa0088570 | AT1G59890.2 | 38.158 | 76 | 47 | 0 | 67 | 142 | 45 | 120 | 7.63e-12 | 63.2 |
| Msa0088570 | AT1G24250.1 | 39.773 | 88 | 52 | 1 | 60 | 147 | 113 | 199 | 8.03e-12 | 62.0 |
| Msa0088570 | AT1G59890.3 | 38.158 | 76 | 47 | 0 | 67 | 142 | 45 | 120 | 8.08e-12 | 62.8 |
| Msa0088570 | AT1G59890.1 | 38.158 | 76 | 47 | 0 | 67 | 142 | 45 | 120 | 8.08e-12 | 62.8 |
| Msa0088570 | AT1G59890.4 | 38.158 | 76 | 47 | 0 | 67 | 142 | 45 | 120 | 8.63e-12 | 62.8 |
| Msa0088570 | AT1G24230.1 | 51.515 | 66 | 31 | 1 | 65 | 129 | 12 | 77 | 1.15e-11 | 61.2 |
| Msa0088570 | AT1G24230.1 | 38.571 | 70 | 43 | 0 | 70 | 139 | 89 | 158 | 6.31e-11 | 59.3 |
| Msa0088570 | AT1G24210.1 | 38.961 | 77 | 45 | 1 | 56 | 130 | 1 | 77 | 2.37e-11 | 58.9 |
| Msa0088570 | AT5G35610.1 | 42.500 | 80 | 43 | 1 | 75 | 154 | 18 | 94 | 3.05e-11 | 58.9 |
| Msa0088570 | AT1G70030.3 | 40.230 | 87 | 51 | 1 | 67 | 153 | 22 | 107 | 3.47e-11 | 58.2 |
| Msa0088570 | AT1G70030.2 | 40.230 | 87 | 51 | 1 | 67 | 153 | 22 | 107 | 5.75e-11 | 57.8 |
| Msa0088570 | AT1G27250.1 | 39.706 | 68 | 41 | 0 | 67 | 134 | 21 | 88 | 7.64e-11 | 57.4 |
| Msa0088570 | AT1G27260.1 | 37.209 | 86 | 53 | 1 | 62 | 147 | 88 | 172 | 8.61e-11 | 58.9 |
Find 35 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGATGAATTGGAGTTTAA+AGG | 0.213179 | 1_2:+69650981 | Msa0088570:three_prime_UTR |
| CAGCAGAAAAGGACGAAAAT+TGG | 0.355383 | 1_2:-69649615 | None:intergenic |
| CGACACTGCTTCACCAATCT+TGG | 0.362408 | 1_2:-69650664 | None:intergenic |
| GCAACAATAAGCTGATGAAT+TGG | 0.369113 | 1_2:+69650971 | Msa0088570:exon |
| GAAAATTCTAGATGATTTCT+CGG | 0.377556 | 1_2:+69650746 | Msa0088570:CDS |
| TGAAGCAGTGTCGTTTGTTA+TGG | 0.413384 | 1_2:+69650674 | Msa0088570:CDS |
| CACAATGGAGGCAGCAGAAA+AGG | 0.425133 | 1_2:-69649626 | None:intergenic |
| TAAAACATGTGTTTCAAGAT+AGG | 0.427626 | 1_2:+69650700 | Msa0088570:CDS |
| TCATCTTCTCAAGATGTAGA+AGG | 0.432636 | 1_2:+69649650 | Msa0088570:CDS |
| AGCTGCTCGATCAATTCTTT+CGG | 0.448838 | 1_2:-69650769 | None:intergenic |
| TAAGTTTGTTAATAGGTAGT+TGG | 0.453932 | 1_2:+69650331 | Msa0088570:intron |
| GGCGCGGCGCATCTCATCTC+AGG | 0.459739 | 1_2:+69650390 | Msa0088570:CDS |
| CTACAAACTCTATACATTTG+AGG | 0.471166 | 1_2:+69650366 | Msa0088570:CDS |
| CGCAGAGTAGATGCCAAGAT+TGG | 0.484518 | 1_2:+69650651 | Msa0088570:CDS |
| TATTGTTGCTGATCATCAAA+TGG | 0.491825 | 1_2:-69650957 | None:intergenic |
| TTCAACATCTTCTTGCCACC+AGG | 0.516818 | 1_2:+69650846 | Msa0088570:CDS |
| AACATGTGTTTCAAGATAGG+AGG | 0.520327 | 1_2:+69650703 | Msa0088570:CDS |
| GAGTTGTTAAAAGATCATAA+AGG | 0.526893 | 1_2:+69650810 | Msa0088570:CDS |
| ACAAGAAATCTCACTTACAT+TGG | 0.536387 | 1_2:+69650869 | Msa0088570:CDS |
| GATCGAGCAGCTGTGAAAGA+AGG | 0.542586 | 1_2:+69650780 | Msa0088570:CDS |
| CATCTTCTCAAGATGTAGAA+GGG | 0.544607 | 1_2:+69649651 | Msa0088570:CDS |
| GTAAGTGAGATTTCTTGTCC+TGG | 0.568387 | 1_2:-69650864 | None:intergenic |
| ACATGTGTTTCAAGATAGGA+GGG | 0.571664 | 1_2:+69650704 | Msa0088570:CDS |
| CAGAAAAGGACGAAAATTGG+AGG | 0.577687 | 1_2:-69649612 | None:intergenic |
| GATGATGAACAACAAGGTGA+TGG | 0.587348 | 1_2:+69650894 | Msa0088570:CDS |
| AGCTGTGAAAGAAGGAATGA+CGG | 0.588334 | 1_2:+69650788 | Msa0088570:CDS |
| ATCTTCTCAAGATGTAGAAG+GGG | 0.592094 | 1_2:+69649652 | Msa0088570:CDS |
| GATTACAATATCATGTCACT+AGG | 0.613330 | 1_2:+69651021 | Msa0088570:three_prime_UTR |
| TGAGAAGATGAGCACAATGG+AGG | 0.639971 | 1_2:-69649638 | None:intergenic |
| TCTATACATTTGAGGCGGCG+CGG | 0.667131 | 1_2:+69650374 | Msa0088570:CDS |
| TCTTGAGAAGATGAGCACAA+TGG | 0.669986 | 1_2:-69649641 | None:intergenic |
| AGTGAGATTTCTTGTCCTGG+TGG | 0.701974 | 1_2:-69650861 | None:intergenic |
| TCTTCTCAAGATGTAGAAGG+GGG | 0.705047 | 1_2:+69649653 | Msa0088570:CDS |
| CAAACTCTATACATTTGAGG+CGG | 0.712900 | 1_2:+69650369 | Msa0088570:CDS |
| TTGGATGATGATGAACAACA+AGG | 0.780029 | 1_2:+69650888 | Msa0088570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTACACTTTAA+TGG | + | chr1_2:69648737-69648756 | Msa0088570:intron | 10.0% |
| !! | CAAATATACTAAAACTATTT+CGG | - | chr1_2:69648777-69648796 | None:intergenic | 15.0% |
| !! | AAAGAAAAGATTAAAAAACA+GGG | - | chr1_2:69649827-69649846 | None:intergenic | 15.0% |
| !! | AAAAGAAAAGATTAAAAAAC+AGG | - | chr1_2:69649828-69649847 | None:intergenic | 15.0% |
| !!! | AATAAATGATTTTTTTCACA+GGG | - | chr1_2:69649874-69649893 | None:intergenic | 15.0% |
| !!! | AAATAAATGATTTTTTTCAC+AGG | - | chr1_2:69649875-69649894 | None:intergenic | 15.0% |
| !!! | TATAATTAAAGATGTCTTTT+TGG | - | chr1_2:69649904-69649923 | None:intergenic | 15.0% |
| !! | TTTGATAAAATAAGACTAAA+GGG | - | chr1_2:69650280-69650299 | None:intergenic | 15.0% |
| !! | ATTTGATAAAATAAGACTAA+AGG | - | chr1_2:69650281-69650300 | None:intergenic | 15.0% |
| !! | TAATCATCTATGAAAAGAAA+AGG | - | chr1_2:69648574-69648593 | None:intergenic | 20.0% |
| !!! | CTTTTCATAGATGATTATTA+CGG | + | chr1_2:69648577-69648596 | Msa0088570:intron | 20.0% |
| !!! | TTTTCATAGATGATTATTAC+GGG | + | chr1_2:69648578-69648597 | Msa0088570:intron | 20.0% |
| !! | TCTCAAACATGTATAAAATA+GGG | + | chr1_2:69648641-69648660 | Msa0088570:intron | 20.0% |
| !!! | CGAAATAGTTTTAGTATATT+TGG | + | chr1_2:69648775-69648794 | Msa0088570:intron | 20.0% |
| !! | GGAACCAAATATAAAAAAAA+GGG | - | chr1_2:69648986-69649005 | None:intergenic | 20.0% |
| !! | AGGAACCAAATATAAAAAAA+AGG | - | chr1_2:69648987-69649006 | None:intergenic | 20.0% |
| !! | ATGAAATTATTACAAAGTAG+AGG | + | chr1_2:69649508-69649527 | Msa0088570:intron | 20.0% |
| !!! | GAAATTTTTCTTGAATGAAT+GGG | - | chr1_2:69649973-69649992 | None:intergenic | 20.0% |
| !!! | AGAAATTTTTCTTGAATGAA+TGG | - | chr1_2:69649974-69649993 | None:intergenic | 20.0% |
| !!! | ATGATATCATCTTCAAATTT+TGG | + | chr1_2:69650059-69650078 | Msa0088570:intron | 20.0% |
| !!! | TGATATCATCTTCAAATTTT+GGG | + | chr1_2:69650060-69650079 | Msa0088570:intron | 20.0% |
| !! | TTAACTTTCATTTATTGTGT+TGG | + | chr1_2:69650226-69650245 | Msa0088570:intron | 20.0% |
| !! | TAACTTTCATTTATTGTGTT+GGG | + | chr1_2:69650227-69650246 | Msa0088570:intron | 20.0% |
| !! | TTGATAAAATAAGACTAAAG+GGG | - | chr1_2:69650279-69650298 | None:intergenic | 20.0% |
| ! | CTCTCAAACATGTATAAAAT+AGG | + | chr1_2:69648640-69648659 | Msa0088570:intron | 25.0% |
| !!! | GTTGCCCTTTTTTTTATATT+TGG | + | chr1_2:69648979-69648998 | Msa0088570:intron | 25.0% |
| ! | ACAATACTATGCCTAATTTA+TGG | - | chr1_2:69649038-69649057 | None:intergenic | 25.0% |
| !!! | GTTTTAATTGAACTCACTTT+TGG | + | chr1_2:69649056-69649075 | Msa0088570:intron | 25.0% |
| ! | TATAGCTCTTGTATTATGTA+AGG | - | chr1_2:69649182-69649201 | None:intergenic | 25.0% |
| ! | TTTCAATAGTAGTTAGAAAG+TGG | + | chr1_2:69649213-69649232 | Msa0088570:intron | 25.0% |
| ! | TTATTACTGTGTTAATCTTC+AGG | + | chr1_2:69649359-69649378 | Msa0088570:intron | 25.0% |
| ! | TATTACTGTGTTAATCTTCA+GGG | + | chr1_2:69649360-69649379 | Msa0088570:intron | 25.0% |
| !!! | GTCTTTTTGAAATAAGTACA+AGG | + | chr1_2:69649536-69649555 | Msa0088570:intron | 25.0% |
| !! | TCTTTTATTCTCAATTATGC+AGG | + | chr1_2:69649573-69649592 | Msa0088570:intron | 25.0% |
| ! | TTATTGCTTAAAATTGAGCT+GGG | - | chr1_2:69649727-69649746 | None:intergenic | 25.0% |
| ! | TTTATTGCTTAAAATTGAGC+TGG | - | chr1_2:69649728-69649747 | None:intergenic | 25.0% |
| ! | AAATGAATCACTCATTTATC+TGG | + | chr1_2:69649745-69649764 | Msa0088570:intron | 25.0% |
| ! | TCTGGATTTATTAATCTACT+AGG | + | chr1_2:69649763-69649782 | Msa0088570:intron | 25.0% |
| ! | CTGGATTTATTAATCTACTA+GGG | + | chr1_2:69649764-69649783 | Msa0088570:intron | 25.0% |
| !!! | GAATGAATGGGTTTATTTTT+GGG | - | chr1_2:69649961-69649980 | None:intergenic | 25.0% |
| !!! | TGAATGAATGGGTTTATTTT+TGG | - | chr1_2:69649962-69649981 | None:intergenic | 25.0% |
| ! | TGATAAAATAAGACTAAAGG+GGG | - | chr1_2:69650278-69650297 | None:intergenic | 25.0% |
| ! | ACTACCTATTAACAAACTTA+GGG | - | chr1_2:69650331-69650350 | None:intergenic | 25.0% |
| ! | AACTACCTATTAACAAACTT+AGG | - | chr1_2:69650332-69650351 | None:intergenic | 25.0% |
| !!! | TAAGTTTGTTAATAGGTAGT+TGG | + | chr1_2:69650331-69650350 | Msa0088570:intron | 25.0% |
| ! | AGAACATAAGAATATGAATG+AGG | - | chr1_2:69650426-69650445 | None:intergenic | 25.0% |
| !! | CTAAATTCAAAAGGTATAGA+GGG | - | chr1_2:69650461-69650480 | None:intergenic | 25.0% |
| !!! | ATACCTTTTGAATTTAGGTT+TGG | + | chr1_2:69650464-69650483 | Msa0088570:intron | 25.0% |
| ! | AAACCAAACCTAAATTCAAA+AGG | - | chr1_2:69650470-69650489 | None:intergenic | 25.0% |
| !! | CTAAATTCAAAAGGTATAGA+GGG | - | chr1_2:69650461-69650480 | None:intergenic | 25.0% |
| !!! | ATACCTTTTGAATTTAGGTT+TGG | + | chr1_2:69650464-69650483 | Msa0088570:intron | 25.0% |
| ! | AAACCAAACCTAAATTCAAA+AGG | - | chr1_2:69650470-69650489 | None:intergenic | 25.0% |
| !!! | AGGTTTGGTTTAATTTTGAA+TGG | + | chr1_2:69650576-69650595 | Msa0088570:intron | 25.0% |
| !!! | GGTTTGGTTTAATTTTGAAT+GGG | + | chr1_2:69650577-69650596 | Msa0088570:intron | 25.0% |
| ! | TAAAACATGTGTTTCAAGAT+AGG | + | chr1_2:69650700-69650719 | Msa0088570:CDS | 25.0% |
| ! | GAAAATTCTAGATGATTTCT+CGG | + | chr1_2:69650746-69650765 | Msa0088570:CDS | 25.0% |
| ! | GAGTTGTTAAAAGATCATAA+AGG | + | chr1_2:69650810-69650829 | Msa0088570:CDS | 25.0% |
| TCTATGAAAAGAAAAGGAGT+AGG | - | chr1_2:69648568-69648587 | None:intergenic | 30.0% | |
| TACATGTTTGAGAGAATTTG+TGG | - | chr1_2:69648634-69648653 | None:intergenic | 30.0% | |
| ATAAAATAGGGTCATGCTAA+CGG | + | chr1_2:69648653-69648672 | Msa0088570:intron | 30.0% | |
| ! | TATATTTGGTTCCTTAACGA+GGG | + | chr1_2:69648789-69648808 | Msa0088570:intron | 30.0% |
| !!! | TACCTTGTTTTTTACACAAG+AGG | - | chr1_2:69648886-69648905 | None:intergenic | 30.0% |
| CTTGTGTAAAAAACAAGGTA+AGG | + | chr1_2:69648886-69648905 | Msa0088570:intron | 30.0% | |
| ATATAAAAAAAAGGGCAACC+CGG | - | chr1_2:69648978-69648997 | None:intergenic | 30.0% | |
| GTTCCTTAACAAGTATCATA+GGG | + | chr1_2:69649001-69649020 | Msa0088570:intron | 30.0% | |
| ! | CACTTGTTAGTCCATAAATT+AGG | + | chr1_2:69649024-69649043 | Msa0088570:intron | 30.0% |
| GAGAAAAATATTGTCCCAAA+AGG | - | chr1_2:69649112-69649131 | None:intergenic | 30.0% | |
| GATAAGAAACTTTCTTGTCT+TGG | - | chr1_2:69649138-69649157 | None:intergenic | 30.0% | |
| TAAGATCCATCATGATTGTA+GGG | - | chr1_2:69649264-69649283 | None:intergenic | 30.0% | |
| TTAAGATCCATCATGATTGT+AGG | - | chr1_2:69649265-69649284 | None:intergenic | 30.0% | |
| TATTGCTTAAAATTGAGCTG+GGG | - | chr1_2:69649726-69649745 | None:intergenic | 30.0% | |
| ! | ACATAGATTTTTCACTGAGT+AGG | - | chr1_2:69650015-69650034 | None:intergenic | 30.0% |
| CTACAAACTCTATACATTTG+AGG | + | chr1_2:69650366-69650385 | Msa0088570:CDS | 30.0% | |
| ! | CCTAAATTCAAAAGGTATAG+AGG | - | chr1_2:69650462-69650481 | None:intergenic | 30.0% |
| ! | CCTCTATACCTTTTGAATTT+AGG | + | chr1_2:69650459-69650478 | Msa0088570:intron | 30.0% |
| !!! | GGTTTGGTTTTGTTTTGAAT+TGG | + | chr1_2:69650480-69650499 | Msa0088570:intron | 30.0% |
| ! | CCTAAATTCAAAAGGTATAG+AGG | - | chr1_2:69650462-69650481 | None:intergenic | 30.0% |
| ! | CCTCTATACCTTTTGAATTT+AGG | + | chr1_2:69650459-69650478 | Msa0088570:intron | 30.0% |
| ! | TAACATTTTCCTTGAAGATG+AGG | + | chr1_2:69650625-69650644 | Msa0088570:intron | 30.0% |
| ACAAGAAATCTCACTTACAT+TGG | + | chr1_2:69650869-69650888 | Msa0088570:CDS | 30.0% | |
| TATTGTTGCTGATCATCAAA+TGG | - | chr1_2:69650960-69650979 | None:intergenic | 30.0% | |
| GATTACAATATCATGTCACT+AGG | + | chr1_2:69651021-69651040 | Msa0088570:three_prime_UTR | 30.0% | |
| GTGGTCTGCAAAATATAACA+TGG | - | chr1_2:69648615-69648634 | None:intergenic | 35.0% | |
| TAAAATAGGGTCATGCTAAC+GGG | + | chr1_2:69648654-69648673 | Msa0088570:intron | 35.0% | |
| ! | GTATATTTGGTTCCTTAACG+AGG | + | chr1_2:69648788-69648807 | Msa0088570:intron | 35.0% |
| ! | ATATTTGGTTCCTTAACGAG+GGG | + | chr1_2:69648790-69648809 | Msa0088570:intron | 35.0% |
| TAAAGTTGTTGTCATGTGAC+TGG | + | chr1_2:69648831-69648850 | Msa0088570:intron | 35.0% | |
| AGCCTCTTGTGTAAAAAACA+AGG | + | chr1_2:69648881-69648900 | Msa0088570:intron | 35.0% | |
| GGTTCCTTAACAAGTATCAT+AGG | + | chr1_2:69649000-69649019 | Msa0088570:intron | 35.0% | |
| ACCTCTTTGTGTTAAGCATA+AGG | + | chr1_2:69649086-69649105 | Msa0088570:intron | 35.0% | |
| ! | TGTTAAGCATAAGGCCTTTT+GGG | + | chr1_2:69649095-69649114 | Msa0088570:intron | 35.0% |
| CAGTAGACCTACAAGAAAAT+GGG | + | chr1_2:69649291-69649310 | Msa0088570:intron | 35.0% | |
| ! | AACATTGCCCATTTTCTTGT+AGG | - | chr1_2:69649301-69649320 | None:intergenic | 35.0% |
| TAAGAGTGATCTGTCATGAT+TGG | + | chr1_2:69649419-69649438 | Msa0088570:intron | 35.0% | |
| AAGAGTGATCTGTCATGATT+GGG | + | chr1_2:69649420-69649439 | Msa0088570:intron | 35.0% | |
| !! | GAGCTTTGGTCATTTTGTTT+TGG | + | chr1_2:69649471-69649490 | Msa0088570:intron | 35.0% |
| TGAAATAAGTACAAGGCATG+TGG | + | chr1_2:69649543-69649562 | Msa0088570:intron | 35.0% | |
| GAAATAAGTACAAGGCATGT+GGG | + | chr1_2:69649544-69649563 | Msa0088570:intron | 35.0% | |
| TCATCTTCTCAAGATGTAGA+AGG | + | chr1_2:69649650-69649669 | Msa0088570:CDS | 35.0% | |
| CATCTTCTCAAGATGTAGAA+GGG | + | chr1_2:69649651-69649670 | Msa0088570:CDS | 35.0% | |
| ATCTTCTCAAGATGTAGAAG+GGG | + | chr1_2:69649652-69649671 | Msa0088570:CDS | 35.0% | |
| ! | TGTATCAGGTTGCTTCTTAA+AGG | + | chr1_2:69649690-69649709 | Msa0088570:intron | 35.0% |
| TATTAATCTACTAGGGACTG+AGG | + | chr1_2:69649771-69649790 | Msa0088570:intron | 35.0% | |
| AACAAGAAACCGAATGAACT+GGG | - | chr1_2:69650253-69650272 | None:intergenic | 35.0% | |
| !! | CTTGCCCTAAGTTTGTTAAT+AGG | + | chr1_2:69650324-69650343 | Msa0088570:intron | 35.0% |
| CAAACTCTATACATTTGAGG+CGG | + | chr1_2:69650369-69650388 | Msa0088570:CDS | 35.0% | |
| AACATGTGTTTCAAGATAGG+AGG | + | chr1_2:69650703-69650722 | Msa0088570:CDS | 35.0% | |
| ACATGTGTTTCAAGATAGGA+GGG | + | chr1_2:69650704-69650723 | Msa0088570:CDS | 35.0% | |
| ! | TTGGATGATGATGAACAACA+AGG | + | chr1_2:69650888-69650907 | Msa0088570:CDS | 35.0% |
| GCAACAATAAGCTGATGAAT+TGG | + | chr1_2:69650971-69650990 | Msa0088570:exon | 35.0% | |
| GCTGATGAATTGGAGTTTAA+AGG | + | chr1_2:69650981-69651000 | Msa0088570:three_prime_UTR | 35.0% | |
| ATTTCCTAAACAACTGTGCC+AGG | - | chr1_2:69648684-69648703 | None:intergenic | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr1_2:69648912-69648931 | Msa0088570:intron | 40.0% | |
| ! | GTGCCCTATGATACTTGTTA+AGG | - | chr1_2:69649007-69649026 | None:intergenic | 40.0% |
| GCCTTATGCTTAACACAAAG+AGG | - | chr1_2:69649090-69649109 | None:intergenic | 40.0% | |
| ! | GTGTTAAGCATAAGGCCTTT+TGG | + | chr1_2:69649094-69649113 | Msa0088570:intron | 40.0% |
| ACTGATCCCTACAATCATGA+TGG | + | chr1_2:69649255-69649274 | Msa0088570:intron | 40.0% | |
| GCAGTAGACCTACAAGAAAA+TGG | + | chr1_2:69649290-69649309 | Msa0088570:intron | 40.0% | |
| ACTCTTACATGGTTGTGTTC+TGG | - | chr1_2:69649406-69649425 | None:intergenic | 40.0% | |
| CATGACAGATCACTCTTACA+TGG | - | chr1_2:69649417-69649436 | None:intergenic | 40.0% | |
| !!! | CCTGCACATTTTTTGAACTG+AGG | - | chr1_2:69649452-69649471 | None:intergenic | 40.0% |
| CCTCAGTTCAAAAAATGTGC+AGG | + | chr1_2:69649449-69649468 | Msa0088570:intron | 40.0% | |
| CAAAAAATGTGCAGGAGCTT+TGG | + | chr1_2:69649457-69649476 | Msa0088570:intron | 40.0% | |
| CAGAAAAGGACGAAAATTGG+AGG | - | chr1_2:69649615-69649634 | None:intergenic | 40.0% | |
| CAGCAGAAAAGGACGAAAAT+TGG | - | chr1_2:69649618-69649637 | None:intergenic | 40.0% | |
| TCTTGAGAAGATGAGCACAA+TGG | - | chr1_2:69649644-69649663 | None:intergenic | 40.0% | |
| TCTTCTCAAGATGTAGAAGG+GGG | + | chr1_2:69649653-69649672 | Msa0088570:CDS | 40.0% | |
| ACTCAGCATTAAGGTGTATC+AGG | + | chr1_2:69649676-69649695 | Msa0088570:intron | 40.0% | |
| !!! | AGGCAGACGATTTGTTTTGA+CGG | + | chr1_2:69649791-69649810 | Msa0088570:intron | 40.0% |
| ACTGAGTAGGATCTCAATTG+TGG | - | chr1_2:69650002-69650021 | None:intergenic | 40.0% | |
| TCGACTCCATTGCAATTGAA+CGG | - | chr1_2:69650164-69650183 | None:intergenic | 40.0% | |
| CAACAAGAAACCGAATGAAC+TGG | - | chr1_2:69650254-69650273 | None:intergenic | 40.0% | |
| CAGTTCATTCGGTTTCTTGT+TGG | + | chr1_2:69650252-69650271 | Msa0088570:intron | 40.0% | |
| !! | TGAAGCAGTGTCGTTTGTTA+TGG | + | chr1_2:69650674-69650693 | Msa0088570:CDS | 40.0% |
| AGCTGCTCGATCAATTCTTT+CGG | - | chr1_2:69650772-69650791 | None:intergenic | 40.0% | |
| AGCTGTGAAAGAAGGAATGA+CGG | + | chr1_2:69650788-69650807 | Msa0088570:CDS | 40.0% | |
| GTAAGTGAGATTTCTTGTCC+TGG | - | chr1_2:69650867-69650886 | None:intergenic | 40.0% | |
| GATGATGAACAACAAGGTGA+TGG | + | chr1_2:69650894-69650913 | Msa0088570:CDS | 40.0% | |
| GTTGTTGTCATGTGACTGGA+AGG | + | chr1_2:69648835-69648854 | Msa0088570:intron | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | chr1_2:69648875-69648894 | None:intergenic | 45.0% |
| GCTGCGTACAATACACCAAA+TGG | + | chr1_2:69648908-69648927 | Msa0088570:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | chr1_2:69648911-69648930 | Msa0088570:intron | 45.0% | |
| TGAGAAGATGAGCACAATGG+AGG | - | chr1_2:69649641-69649660 | None:intergenic | 45.0% | |
| !!! | GGCAGACGATTTGTTTTGAC+GGG | + | chr1_2:69649792-69649811 | Msa0088570:intron | 45.0% |
| !! | TTTGGGTTGCGTCTAACTCA+AGG | + | chr1_2:69650077-69650096 | Msa0088570:intron | 45.0% |
| AATGGTCGATCAAGGTGGAA+TGG | + | chr1_2:69650103-69650122 | Msa0088570:intron | 45.0% | |
| ATCCTCCCGTTCAATTGCAA+TGG | + | chr1_2:69650155-69650174 | Msa0088570:intron | 45.0% | |
| CGACTCCATTGCAATTGAAC+GGG | - | chr1_2:69650163-69650182 | None:intergenic | 45.0% | |
| ACAAACCCAAGCCCAACAAA+GGG | - | chr1_2:69650200-69650219 | None:intergenic | 45.0% | |
| AACAAACCCAAGCCCAACAA+AGG | - | chr1_2:69650201-69650220 | None:intergenic | 45.0% | |
| TTCAACATCTTCTTGCCACC+AGG | + | chr1_2:69650846-69650865 | Msa0088570:CDS | 45.0% | |
| AGTGAGATTTCTTGTCCTGG+TGG | - | chr1_2:69650864-69650883 | None:intergenic | 45.0% | |
| TGCTCCTGGCACAGTTGTTT+AGG | + | chr1_2:69648677-69648696 | Msa0088570:intron | 50.0% | |
| TCCTTAACGAGGGGTAACCT+TGG | + | chr1_2:69648799-69648818 | Msa0088570:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | chr1_2:69648819-69648838 | None:intergenic | 50.0% | |
| TCATGTGACTGGAAGGTCAC+AGG | + | chr1_2:69648842-69648861 | Msa0088570:intron | 50.0% | |
| AAGGTCACAGGTTCAAGTCC+TGG | + | chr1_2:69648854-69648873 | Msa0088570:intron | 50.0% | |
| CACAATGGAGGCAGCAGAAA+AGG | - | chr1_2:69649629-69649648 | None:intergenic | 50.0% | |
| AGAAGGGGGACTCAGCATTA+AGG | + | chr1_2:69649667-69649686 | Msa0088570:CDS | 50.0% | |
| GCGTCTAACTCAAGGTGGAA+TGG | + | chr1_2:69650085-69650104 | Msa0088570:intron | 50.0% | |
| CAAGGTGGAATGGTCGATCA+AGG | + | chr1_2:69650095-69650114 | Msa0088570:intron | 50.0% | |
| AATTGAACGGGAGGATGAGG+GGG | - | chr1_2:69650151-69650170 | None:intergenic | 50.0% | |
| CAATTGAACGGGAGGATGAG+GGG | - | chr1_2:69650152-69650171 | None:intergenic | 50.0% | |
| GCAATTGAACGGGAGGATGA+GGG | - | chr1_2:69650153-69650172 | None:intergenic | 50.0% | |
| TGCAATTGAACGGGAGGATG+AGG | - | chr1_2:69650154-69650173 | None:intergenic | 50.0% | |
| CTCCATTGCAATTGAACGGG+AGG | - | chr1_2:69650160-69650179 | None:intergenic | 50.0% | |
| ATTGCAATGGAGTCGACGAC+AGG | + | chr1_2:69650168-69650187 | Msa0088570:intron | 50.0% | |
| TTGCAATGGAGTCGACGACA+GGG | + | chr1_2:69650169-69650188 | Msa0088570:intron | 50.0% | |
| CAAACCCAAGCCCAACAAAG+GGG | - | chr1_2:69650199-69650218 | None:intergenic | 50.0% | |
| TGTGTTGGGCCCAGTTCATT+CGG | + | chr1_2:69650241-69650260 | Msa0088570:intron | 50.0% | |
| ! | TCTATACATTTGAGGCGGCG+CGG | + | chr1_2:69650374-69650393 | Msa0088570:CDS | 50.0% |
| TCTGCGTCTCCTCATCTTCA+AGG | - | chr1_2:69650637-69650656 | None:intergenic | 50.0% | |
| CGCAGAGTAGATGCCAAGAT+TGG | + | chr1_2:69650651-69650670 | Msa0088570:CDS | 50.0% | |
| CGACACTGCTTCACCAATCT+TGG | - | chr1_2:69650667-69650686 | None:intergenic | 50.0% | |
| GATCGAGCAGCTGTGAAAGA+AGG | + | chr1_2:69650780-69650799 | Msa0088570:CDS | 50.0% | |
| GCCAAGGTTACCCCTCGTTA+AGG | - | chr1_2:69648803-69648822 | None:intergenic | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | - | chr1_2:69648951-69648970 | None:intergenic | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | - | chr1_2:69648952-69648971 | None:intergenic | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | + | chr1_2:69648956-69648975 | Msa0088570:intron | 55.0% |
| GGGTTGCGTCTAACTCAAGG+TGG | + | chr1_2:69650080-69650099 | Msa0088570:intron | 55.0% | |
| GGTGGAATGGTCGATCAAGG+TGG | + | chr1_2:69650098-69650117 | Msa0088570:intron | 55.0% | |
| ACAGGGTCTGCCCCTTTGTT+GGG | + | chr1_2:69650186-69650205 | Msa0088570:intron | 55.0% | |
| TCTGCCCCTTTGTTGGGCTT+GGG | + | chr1_2:69650192-69650211 | Msa0088570:intron | 55.0% | |
| ! | GTCATGCTAACGGGTGCTCC+TGG | + | chr1_2:69648663-69648682 | Msa0088570:intron | 60.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | + | chr1_2:69648808-69648827 | Msa0088570:intron | 60.0% | |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | + | chr1_2:69648957-69648976 | Msa0088570:intron | 60.0% |
| ACGGGAGGATGAGGGGGAAT+AGG | - | chr1_2:69650145-69650164 | None:intergenic | 60.0% | |
| GACAGGGTCTGCCCCTTTGT+TGG | + | chr1_2:69650185-69650204 | Msa0088570:intron | 60.0% | |
| GTCTGCCCCTTTGTTGGGCT+TGG | + | chr1_2:69650191-69650210 | Msa0088570:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTCCC+CGG | + | chr1_2:69648924-69648943 | Msa0088570:intron | 65.0% |
| CGGGGAGGGGTCCCACCATT+TGG | - | chr1_2:69648926-69648945 | None:intergenic | 70.0% | |
| CATACGCAGGGTCCGGGGAG+GGG | - | chr1_2:69648939-69648958 | None:intergenic | 70.0% | |
| GCATACGCAGGGTCCGGGGA+GGG | - | chr1_2:69648940-69648959 | None:intergenic | 70.0% | |
| CTCCCCGGACCCTGCGTATG+CGG | + | chr1_2:69648939-69648958 | Msa0088570:intron | 70.0% | |
| TCCCCGGACCCTGCGTATGC+GGG | + | chr1_2:69648940-69648959 | Msa0088570:intron | 70.0% | |
| TCCCGCATACGCAGGGTCCG+GGG | - | chr1_2:69648944-69648963 | None:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | - | chr1_2:69648945-69648964 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | - | chr1_2:69648946-69648965 | None:intergenic | 70.0% | |
| GGCGCGGCGCATCTCATCTC+AGG | + | chr1_2:69650390-69650409 | Msa0088570:CDS | 70.0% | |
| CGCATACGCAGGGTCCGGGG+AGG | - | chr1_2:69648941-69648960 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 69648552 | 69651062 | 69648552 | ID=Msa0088570;Name=Msa0088570 |
| chr1_2 | mRNA | 69648552 | 69651062 | 69648552 | ID=Msa0088570-mRNA-1;Parent=Msa0088570;Name=Msa0088570-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0.33|0.5|0.75|0.66|0.75|4|82|167 |
| chr1_2 | exon | 69648552 | 69648556 | 69648552 | ID=Msa0088570-mRNA-1:exon:23952;Parent=Msa0088570-mRNA-1 |
| chr1_2 | exon | 69649595 | 69649688 | 69649595 | ID=Msa0088570-mRNA-1:exon:23953;Parent=Msa0088570-mRNA-1 |
| chr1_2 | exon | 69650346 | 69650411 | 69650346 | ID=Msa0088570-mRNA-1:exon:23954;Parent=Msa0088570-mRNA-1 |
| chr1_2 | exon | 69650642 | 69651062 | 69650642 | ID=Msa0088570-mRNA-1:exon:23955;Parent=Msa0088570-mRNA-1 |
| chr1_2 | CDS | 69648552 | 69648556 | 69648552 | ID=Msa0088570-mRNA-1:cds;Parent=Msa0088570-mRNA-1 |
| chr1_2 | CDS | 69649595 | 69649688 | 69649595 | ID=Msa0088570-mRNA-1:cds;Parent=Msa0088570-mRNA-1 |
| chr1_2 | CDS | 69650346 | 69650411 | 69650346 | ID=Msa0088570-mRNA-1:cds;Parent=Msa0088570-mRNA-1 |
| chr1_2 | CDS | 69650642 | 69650980 | 69650642 | ID=Msa0088570-mRNA-1:cds;Parent=Msa0088570-mRNA-1 |
| chr1_2 | three_prime_UTR | 69650981 | 69651062 | 69650981 | ID=Msa0088570-mRNA-1:three_prime_utr;Parent=Msa0088570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
