AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0531970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0531970 MtrunA17_Chr4g0005191 96.903 226 7 0 1 226 1 226 6.56e-157 433
Msa0531970 MtrunA17_Chr5g0437751 59.512 205 78 2 6 210 2 201 1.79e-78 234
Msa0531970 MtrunA17_Chr7g0260751 38.650 163 98 1 57 219 36 196 4.21e-33 118
Msa0531970 MtrunA17_Chr3g0106401 45.087 173 90 1 27 199 1 168 6.24e-29 107
Msa0531970 MtrunA17_Chr2g0330441 37.037 162 92 4 44 199 21 178 1.35e-28 106
Msa0531970 MtrunA17_Chr1g0184741 38.272 162 84 2 59 206 31 190 3.52e-27 102
Msa0531970 MtrunA17_Chr6g0488551 31.053 190 126 3 26 213 2 188 7.77e-26 99.8
Msa0531970 MtrunA17_Chr2g0330451 41.667 156 89 1 44 199 20 173 1.02e-23 93.6
Msa0531970 MtrunA17_Chr8g0341921 38.255 149 90 1 45 193 20 166 8.37e-20 83.2
Msa0531970 MtrunA17_Chr1g0190601 40.491 163 86 3 60 222 35 186 5.84e-19 81.3
Msa0531970 MtrunA17_Chr1g0187861 33.758 157 103 1 45 200 8 164 2.38e-17 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0531970 AT2G38360.1 62.136 206 74 2 5 210 3 204 1.27e-89 263
Msa0531970 AT5G01640.1 57.075 212 83 4 4 213 2 207 2.60e-80 240
Msa0531970 AT3G56110.3 56.098 205 78 2 6 210 2 194 9.60e-72 218
Msa0531970 AT3G56110.1 56.098 205 78 2 6 210 2 194 9.60e-72 218
Msa0531970 AT3G56110.2 56.098 205 78 2 6 210 2 194 9.60e-72 218
Msa0531970 AT3G56110.4 56.098 205 78 2 6 210 2 194 9.60e-72 218
Msa0531970 AT5G05380.4 54.545 209 85 2 2 210 42 240 4.78e-67 207
Msa0531970 AT5G05380.1 55.072 207 83 2 4 210 1 197 5.20e-67 206
Msa0531970 AT5G05380.3 54.545 209 85 2 2 210 50 248 6.31e-67 207
Msa0531970 AT5G05380.2 54.545 209 85 2 2 210 66 264 1.31e-66 207
Msa0531970 AT2G40380.1 56.522 207 79 2 4 210 1 196 3.51e-66 204
Msa0531970 AT5G07110.1 63.758 149 54 0 51 199 36 184 3.03e-56 178
Msa0531970 AT4G00005.1 60.396 101 36 2 83 181 3 101 3.22e-33 116
Msa0531970 AT1G55190.1 39.429 175 101 3 38 209 14 186 8.84e-33 117
Msa0531970 AT3G13710.1 36.628 172 106 2 38 208 14 183 2.41e-28 106
Msa0531970 AT1G04260.1 33.758 157 102 1 44 200 5 159 1.03e-25 99.4
Msa0531970 AT1G08770.1 38.129 139 86 0 60 198 48 186 1.86e-24 96.7
Msa0531970 AT5G56230.1 33.113 151 98 2 50 199 26 174 2.28e-23 93.2
Msa0531970 AT1G17700.1 35.976 164 103 1 38 201 15 176 3.69e-23 92.4
Msa0531970 AT3G13720.1 37.654 162 98 2 49 209 26 185 1.06e-22 91.7
Msa0531970 AT4G29658.2 35.625 160 100 2 44 202 19 176 7.11e-21 86.7
Msa0531970 AT1G55640.1 32.184 174 96 7 48 209 23 186 8.31e-18 78.6

Find 93 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGATCCGGCGGTGGTTGA+TGG 0.281626 4_1:+6043798 None:intergenic
GTGGCGTCGGAGAAGGATTC+AGG 0.290221 4_1:+6043633 None:intergenic
TCATTGGCCTCCTCGCTTCA+TGG 0.313200 4_1:-6043503 Msa0531970:CDS
GATCATAAGCGTTTCGAAAT+CGG 0.372244 4_1:+6043419 None:intergenic
GAGAGAGACAGCGAGAATTC+CGG 0.373601 4_1:+6043554 None:intergenic
TTCTCTCTCATCCTCCTCAT+TGG 0.393022 4_1:-6043519 Msa0531970:CDS
CCGGCGGTGGTTGATGGTGG+AGG 0.395718 4_1:+6043804 None:intergenic
CGGTAGGACGGAAGAGGTAG+AGG 0.407361 4_1:+6043475 None:intergenic
GGTGGAGGGACGGAGGTGAC+AGG 0.408719 4_1:+6043819 None:intergenic
GGATCTCTTCCTTGATGAAC+AGG 0.419462 4_1:-6043280 Msa0531970:CDS
GTTGCTGTTGTTTGTCTCCA+TGG 0.420591 4_1:-6043321 Msa0531970:CDS
CTTGTTTCCGCCTTGATGCT+CGG 0.425577 4_1:-6043345 Msa0531970:CDS
ACGGAGGTGACAGGGAGAAC+GGG 0.428185 4_1:+6043828 None:intergenic
ACAGCTGCGGCACCGGTAGT+AGG 0.444424 4_1:+6043216 None:intergenic
TGGCACCGGATCCGACGTTC+CGG 0.457802 4_1:-6043769 Msa0531970:CDS
GCCGCAGCTGTTCCTTCCTC+CGG 0.465868 4_1:-6043204 Msa0531970:CDS
ACCGCCGGATCCACCGTCTC+TGG 0.470096 4_1:-6043789 Msa0531970:CDS
TTGATGAGGACACGGACGGC+GGG 0.471976 4_1:+6043738 None:intergenic
CAGGATAATTCTCAGGCTAC+TGG 0.474636 4_1:-6043261 Msa0531970:CDS
GATCGTCCTCTCGTTCTCTT+CGG 0.480472 4_1:-6043453 Msa0531970:CDS
ACGGAGGGTGGCGTCGGAGA+AGG 0.486075 4_1:+6043626 None:intergenic
ATTTACCGGAACGTCGGATC+CGG 0.490828 4_1:+6043764 None:intergenic
GACGGAGGTGACAGGGAGAA+CGG 0.491325 4_1:+6043827 None:intergenic
GACGATCGGTAGGACGGAAG+AGG 0.491385 4_1:+6043469 None:intergenic
GCCTCGCACAACGCCGTCCA+TGG 0.494685 4_1:-6043689 Msa0531970:CDS
TGATGAACAGGATAATTCTC+AGG 0.497238 4_1:-6043268 Msa0531970:CDS
AACTACTACGCCGTCGTCGC+CGG 0.500902 4_1:-6043573 Msa0531970:CDS
GGTGCCAGAGACGGTGGATC+CGG 0.504978 4_1:+6043785 None:intergenic
GATCCGGCGGTGGTTGATGG+TGG 0.505226 4_1:+6043801 None:intergenic
GGAAGGAACAGCTGCGGCAC+CGG 0.508345 4_1:+6043209 None:intergenic
TTCGTCCGTGCTCCTACTAC+CGG 0.513047 4_1:-6043228 Msa0531970:CDS
AGGGAGAACGGGTGGAGCGG+AGG 0.520564 4_1:+6043839 None:intergenic
GAAACGCTTATGATCCTCTC+AGG 0.525471 4_1:-6043411 Msa0531970:CDS
GAGAATTATCCTGTTCATCA+AGG 0.528333 4_1:+6043271 None:intergenic
TCCATGGACGGCGTTGTGCG+AGG 0.531166 4_1:+6043688 None:intergenic
GATGAGGACACGGACGGCGG+GGG 0.531662 4_1:+6043740 None:intergenic
GGATCCACCGTCTCTGGCAC+CGG 0.532730 4_1:-6043783 Msa0531970:CDS
CCATGGAGCATTCCGTGCAC+CGG 0.534816 4_1:-6043304 Msa0531970:CDS
CGAGAGGACGATCGGTAGGA+CGG 0.535810 4_1:+6043463 None:intergenic
AGAGACGGTGGATCCGGCGG+TGG 0.540520 4_1:+6043791 None:intergenic
GACAGGGAGAACGGGTGGAG+CGG 0.542549 4_1:+6043836 None:intergenic
AGCGAGAATTCCGGCGACGA+CGG 0.543379 4_1:+6043563 None:intergenic
GGCGTTGTGCGAGGCCGTTG+CGG 0.553514 4_1:+6043697 None:intergenic
CCGGTGCACGGAATGCTCCA+TGG 0.555859 4_1:+6043304 None:intergenic
GGTGGTTGATGGTGGAGGGA+CGG 0.558405 4_1:+6043809 None:intergenic
TAGGAGCACGGACGAAGGAG+AGG 0.562988 4_1:+6043235 None:intergenic
TCATCAAGGAAGAGATCCTC+CGG 0.566507 4_1:+6043285 None:intergenic
GTGGAGGGACGGAGGTGACA+GGG 0.569763 4_1:+6043820 None:intergenic
GCGGACACGGAGGGTGGCGT+CGG 0.570953 4_1:+6043620 None:intergenic
ATTCAGAGAGGTTGTTGATG+AGG 0.571632 4_1:+6043724 None:intergenic
GTCGGATCCGGTGCCAGAGA+CGG 0.575345 4_1:+6043776 None:intergenic
GGAAGAGATCCTCCGGTGCA+CGG 0.575672 4_1:+6043292 None:intergenic
AATCAAACGCGTCCGGAGGA+AGG 0.576535 4_1:+6043192 None:intergenic
AACAGCAACACCGAGCATCA+AGG 0.576633 4_1:+6043335 None:intergenic
GAGGTGACAGGGAGAACGGG+TGG 0.577188 4_1:+6043831 None:intergenic
TGAGAGAGAACGGATTTGTG+AGG 0.578524 4_1:+6043532 None:intergenic
ACCAAATCAAACGCGTCCGG+AGG 0.578759 4_1:+6043188 None:intergenic
GAAGAGAACGAGAGGACGAT+CGG 0.579653 4_1:+6043455 None:intergenic
TGATGAGGACACGGACGGCG+GGG 0.583090 4_1:+6043739 None:intergenic
CGGCGGTGGTTGATGGTGGA+GGG 0.583397 4_1:+6043805 None:intergenic
ATTACCAAATCAAACGCGTC+CGG 0.587692 4_1:+6043185 None:intergenic
GAACAGATCCAACGCTGGTG+AGG 0.590012 4_1:+6043367 None:intergenic
GGATTCAGGTTTGCTGAAAG+CGG 0.593988 4_1:+6043647 None:intergenic
GGTTGATGGTGGAGGGACGG+AGG 0.595266 4_1:+6043812 None:intergenic
TATGATCCTCTCAGGACTCA+CGG 0.596304 4_1:-6043403 Msa0531970:CDS
CGACGAGTTCTGTCCATGGA+CGG 0.599248 4_1:+6043676 None:intergenic
ATGAAGCGAGGAGGCCAATG+AGG 0.599656 4_1:+6043505 None:intergenic
ATGAGGAGGATGAGAGAGAA+CGG 0.602652 4_1:+6043522 None:intergenic
GCCAGAGACGGTGGATCCGG+CGG 0.610168 4_1:+6043788 None:intergenic
CGGTCGACGAGTTCTGTCCA+TGG 0.610772 4_1:+6043672 None:intergenic
AGAACGAGAGGACGATCGGT+AGG 0.613116 4_1:+6043459 None:intergenic
GTTGATGAGGACACGGACGG+CGG 0.616161 4_1:+6043737 None:intergenic
GGGTGGAGCGGAGGACATTG+TGG 0.618821 4_1:+6043848 None:intergenic
AGGACGGAAGAGGTAGAGGA+AGG 0.623311 4_1:+6043479 None:intergenic
GGATCCGGTGCCAGAGACGG+TGG 0.625462 4_1:+6043779 None:intergenic
AAGCGAGGAGGCCAATGAGG+AGG 0.625591 4_1:+6043508 None:intergenic
TGGAGCATTCCGTGCACCGG+AGG 0.631225 4_1:-6043301 Msa0531970:CDS
CAGGTTTGCTGAAAGCGGAA+CGG 0.637545 4_1:+6043652 None:intergenic
CCTCCACCATCAACCACCGC+CGG 0.642890 4_1:-6043804 Msa0531970:CDS
CGAAGACCGTGAGTCCTGAG+AGG 0.643994 4_1:+6043397 None:intergenic
GTGCGACCGAAGAGAACGAG+AGG 0.646103 4_1:+6043447 None:intergenic
CGACGGCGTAGTAGTTGACA+CGG 0.654494 4_1:+6043580 None:intergenic
AGAGGTTGTTGATGAGGACA+CGG 0.660241 4_1:+6043730 None:intergenic
AGAGGAAGGTCCATGAAGCG+AGG 0.662666 4_1:+6043493 None:intergenic
TCCGGAGGAAGGAACAGCTG+CGG 0.666900 4_1:+6043203 None:intergenic
GGAAGGTCCATGAAGCGAGG+AGG 0.668403 4_1:+6043496 None:intergenic
CTCTCTGAATCACTCCGCAA+CGG 0.671492 4_1:-6043711 Msa0531970:CDS
CGGCACCGGTAGTAGGAGCA+CGG 0.671774 4_1:+6043223 None:intergenic
GTTGTTGATGAGGACACGGA+CGG 0.682626 4_1:+6043734 None:intergenic
AACAAGAACAGATCCAACGC+TGG 0.684838 4_1:+6043362 None:intergenic
GGTAGTAGGAGCACGGACGA+AGG 0.695853 4_1:+6043230 None:intergenic
CGTTGCGGAGTGATTCAGAG+AGG 0.702579 4_1:+6043712 None:intergenic
AGCAACACCGAGCATCAAGG+CGG 0.718038 4_1:+6043338 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GGAAGTATGAGTAGTTTTTG+CGG + chr4_1:6043448-6043467 None:intergenic 35.0%
GATCATAAGCGTTTCGAAAT+CGG + chr4_1:6043630-6043649 None:intergenic 35.0%
GAGAATTATCCTGTTCATCA+AGG + chr4_1:6043778-6043797 None:intergenic 35.0%
TGATGAACAGGATAATTCTC+AGG - chr4_1:6043778-6043797 Msa0531970:CDS 35.0%
ATTCAGAGAGGTTGTTGATG+AGG + chr4_1:6043325-6043344 None:intergenic 40.0%
! ATGAGTAGTTTTTGCGGACA+CGG + chr4_1:6043442-6043461 None:intergenic 40.0%
! AGAGGTTGTTGATGAGGACA+CGG + chr4_1:6043319-6043338 None:intergenic 45.0%
!! GGATTCAGGTTTGCTGAAAG+CGG + chr4_1:6043402-6043421 None:intergenic 45.0%
! TGAGAGAGAACGGATTTGTG+AGG + chr4_1:6043517-6043536 None:intergenic 45.0%
ATGAGGAGGATGAGAGAGAA+CGG + chr4_1:6043527-6043546 None:intergenic 45.0%
TTCTCTCTCATCCTCCTCAT+TGG - chr4_1:6043527-6043546 Msa0531970:CDS 45.0%
GAAACGCTTATGATCCTCTC+AGG - chr4_1:6043635-6043654 Msa0531970:CDS 45.0%
TATGATCCTCTCAGGACTCA+CGG - chr4_1:6043643-6043662 Msa0531970:CDS 45.0%
AACAAGAACAGATCCAACGC+TGG + chr4_1:6043687-6043706 None:intergenic 45.0%
! GTTGCTGTTGTTTGTCTCCA+TGG - chr4_1:6043725-6043744 Msa0531970:CDS 45.0%
TCATCAAGGAAGAGATCCTC+CGG + chr4_1:6043764-6043783 None:intergenic 45.0%
GGATCTCTTCCTTGATGAAC+AGG - chr4_1:6043766-6043785 Msa0531970:CDS 45.0%
CAGGATAATTCTCAGGCTAC+TGG - chr4_1:6043785-6043804 Msa0531970:CDS 45.0%
ATTTACCGGAACGTCGGATC+CGG + chr4_1:6043285-6043304 None:intergenic 50.0%
! GTTGTTGATGAGGACACGGA+CGG + chr4_1:6043315-6043334 None:intergenic 50.0%
CTCTCTGAATCACTCCGCAA+CGG - chr4_1:6043335-6043354 Msa0531970:CDS 50.0%
!! CAGGTTTGCTGAAAGCGGAA+CGG + chr4_1:6043397-6043416 None:intergenic 50.0%
! GTAGTTTTTGCGGACACGGA+GGG + chr4_1:6043438-6043457 None:intergenic 50.0%
! AGTAGTTTTTGCGGACACGG+AGG + chr4_1:6043439-6043458 None:intergenic 50.0%
GAGAGAGACAGCGAGAATTC+CGG + chr4_1:6043495-6043514 None:intergenic 50.0%
GAAGAGAACGAGAGGACGAT+CGG + chr4_1:6043594-6043613 None:intergenic 50.0%
GATCGTCCTCTCGTTCTCTT+CGG - chr4_1:6043593-6043612 Msa0531970:CDS 50.0%
CTTGTTTCCGCCTTGATGCT+CGG - chr4_1:6043701-6043720 Msa0531970:CDS 50.0%
AACAGCAACACCGAGCATCA+AGG + chr4_1:6043714-6043733 None:intergenic 50.0%
GGGGGAATTTACCGGAACGT+CGG + chr4_1:6043291-6043310 None:intergenic 55.0%
CGTTGCGGAGTGATTCAGAG+AGG + chr4_1:6043337-6043356 None:intergenic 55.0%
CGACGAGTTCTGTCCATGGA+CGG + chr4_1:6043373-6043392 None:intergenic 55.0%
CGACGGCGTAGTAGTTGACA+CGG + chr4_1:6043469-6043488 None:intergenic 55.0%
ATGAAGCGAGGAGGCCAATG+AGG + chr4_1:6043544-6043563 None:intergenic 55.0%
! TCATTGGCCTCCTCGCTTCA+TGG - chr4_1:6043543-6043562 Msa0531970:CDS 55.0%
AGAGGAAGGTCCATGAAGCG+AGG + chr4_1:6043556-6043575 None:intergenic 55.0%
AGGACGGAAGAGGTAGAGGA+AGG + chr4_1:6043570-6043589 None:intergenic 55.0%
AGAACGAGAGGACGATCGGT+AGG + chr4_1:6043590-6043609 None:intergenic 55.0%
!! GTCGTTTTCCTCACCAGCGT+TGG - chr4_1:6043671-6043690 Msa0531970:CDS 55.0%
GAACAGATCCAACGCTGGTG+AGG + chr4_1:6043682-6043701 None:intergenic 55.0%
AGCAACACCGAGCATCAAGG+CGG + chr4_1:6043711-6043730 None:intergenic 55.0%
TTCGTCCGTGCTCCTACTAC+CGG - chr4_1:6043818-6043837 Msa0531970:CDS 55.0%
ACGGAGGTGACAGGGAGAAC+GGG + chr4_1:6043221-6043240 None:intergenic 60.0%
GACGGAGGTGACAGGGAGAA+CGG + chr4_1:6043222-6043241 None:intergenic 60.0%
!! GGTGGTTGATGGTGGAGGGA+CGG + chr4_1:6043240-6043259 None:intergenic 60.0%
TTGATGAGGACACGGACGGC+GGG + chr4_1:6043311-6043330 None:intergenic 60.0%
! GTTGATGAGGACACGGACGG+CGG + chr4_1:6043312-6043331 None:intergenic 60.0%
CGGTCGACGAGTTCTGTCCA+TGG + chr4_1:6043377-6043396 None:intergenic 60.0%
! GTGGCGTCGGAGAAGGATTC+AGG + chr4_1:6043416-6043435 None:intergenic 60.0%
! GTTTTTGCGGACACGGAGGG+TGG + chr4_1:6043435-6043454 None:intergenic 60.0%
AACTACTACGCCGTCGTCGC+CGG - chr4_1:6043473-6043492 Msa0531970:CDS 60.0%
AGCGAGAATTCCGGCGACGA+CGG + chr4_1:6043486-6043505 None:intergenic 60.0%
AAGCGAGGAGGCCAATGAGG+AGG + chr4_1:6043541-6043560 None:intergenic 60.0%
GGAAGGTCCATGAAGCGAGG+AGG + chr4_1:6043553-6043572 None:intergenic 60.0%
CGGTAGGACGGAAGAGGTAG+AGG + chr4_1:6043574-6043593 None:intergenic 60.0%
GACGATCGGTAGGACGGAAG+AGG + chr4_1:6043580-6043599 None:intergenic 60.0%
CGAGAGGACGATCGGTAGGA+CGG + chr4_1:6043586-6043605 None:intergenic 60.0%
GTGCGACCGAAGAGAACGAG+AGG + chr4_1:6043602-6043621 None:intergenic 60.0%
CGAAGACCGTGAGTCCTGAG+AGG + chr4_1:6043652-6043671 None:intergenic 60.0%
! CCATGGAGCATTCCGTGCAC+CGG - chr4_1:6043742-6043761 Msa0531970:CDS 60.0%
GGAAGAGATCCTCCGGTGCA+CGG + chr4_1:6043757-6043776 None:intergenic 60.0%
! TAGGAGCACGGACGAAGGAG+AGG + chr4_1:6043814-6043833 None:intergenic 60.0%
! GGTAGTAGGAGCACGGACGA+AGG + chr4_1:6043819-6043838 None:intergenic 60.0%
TCCGGAGGAAGGAACAGCTG+CGG + chr4_1:6043846-6043865 None:intergenic 60.0%
GGGTGGAGCGGAGGACATTG+TGG + chr4_1:6043201-6043220 None:intergenic 65.0%
GACAGGGAGAACGGGTGGAG+CGG + chr4_1:6043213-6043232 None:intergenic 65.0%
GAGGTGACAGGGAGAACGGG+TGG + chr4_1:6043218-6043237 None:intergenic 65.0%
GTGGAGGGACGGAGGTGACA+GGG + chr4_1:6043229-6043248 None:intergenic 65.0%
!! GGTTGATGGTGGAGGGACGG+AGG + chr4_1:6043237-6043256 None:intergenic 65.0%
!! CGGCGGTGGTTGATGGTGGA+GGG + chr4_1:6043244-6043263 None:intergenic 65.0%
CCTCCACCATCAACCACCGC+CGG - chr4_1:6043242-6043261 Msa0531970:CDS 65.0%
!! GATCCGGCGGTGGTTGATGG+TGG + chr4_1:6043248-6043267 None:intergenic 65.0%
GTGGATCCGGCGGTGGTTGA+TGG + chr4_1:6043251-6043270 None:intergenic 65.0%
GGTGCCAGAGACGGTGGATC+CGG + chr4_1:6043264-6043283 None:intergenic 65.0%
GGATCCACCGTCTCTGGCAC+CGG - chr4_1:6043263-6043282 Msa0531970:CDS 65.0%
! GTCGGATCCGGTGCCAGAGA+CGG + chr4_1:6043273-6043292 None:intergenic 65.0%
! TGGCACCGGATCCGACGTTC+CGG - chr4_1:6043277-6043296 Msa0531970:CDS 65.0%
CGGACGGCGGGGGAATTTAC+CGG + chr4_1:6043299-6043318 None:intergenic 65.0%
TGATGAGGACACGGACGGCG+GGG + chr4_1:6043310-6043329 None:intergenic 65.0%
TCCATGGACGGCGTTGTGCG+AGG + chr4_1:6043361-6043380 None:intergenic 65.0%
CCGGTGCACGGAATGCTCCA+TGG + chr4_1:6043745-6043764 None:intergenic 65.0%
! TGGAGCATTCCGTGCACCGG+AGG - chr4_1:6043745-6043764 Msa0531970:CDS 65.0%
!! CGGCACCGGTAGTAGGAGCA+CGG + chr4_1:6043826-6043845 None:intergenic 65.0%
!! ACAGCTGCGGCACCGGTAGT+AGG + chr4_1:6043833-6043852 None:intergenic 65.0%
GGAAGGAACAGCTGCGGCAC+CGG + chr4_1:6043840-6043859 None:intergenic 65.0%
GCCGCAGCTGTTCCTTCCTC+CGG - chr4_1:6043842-6043861 Msa0531970:CDS 65.0%
AGGGAGAACGGGTGGAGCGG+AGG + chr4_1:6043210-6043229 None:intergenic 70.0%
GGTGGAGGGACGGAGGTGAC+AGG + chr4_1:6043230-6043249 None:intergenic 70.0%
!! CCGGCGGTGGTTGATGGTGG+AGG + chr4_1:6043245-6043264 None:intergenic 70.0%
AGAGACGGTGGATCCGGCGG+TGG + chr4_1:6043258-6043277 None:intergenic 70.0%
ACCGCCGGATCCACCGTCTC+TGG - chr4_1:6043257-6043276 Msa0531970:CDS 70.0%
GCCAGAGACGGTGGATCCGG+CGG + chr4_1:6043261-6043280 None:intergenic 70.0%
! GGATCCGGTGCCAGAGACGG+TGG + chr4_1:6043270-6043289 None:intergenic 70.0%
GATGAGGACACGGACGGCGG+GGG + chr4_1:6043309-6043328 None:intergenic 70.0%
GGCGTTGTGCGAGGCCGTTG+CGG + chr4_1:6043352-6043371 None:intergenic 70.0%
GCCTCGCACAACGCCGTCCA+TGG - chr4_1:6043357-6043376 Msa0531970:CDS 70.0%
! ACGGAGGGTGGCGTCGGAGA+AGG + chr4_1:6043423-6043442 None:intergenic 70.0%
GCGGACACGGAGGGTGGCGT+CGG + chr4_1:6043429-6043448 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 6043194 6043874 6043194 ID=Msa0531970;Name=Msa0531970
chr4_1 mRNA 6043194 6043874 6043194 ID=Msa0531970-mRNA-1;Parent=Msa0531970;Name=Msa0531970-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|226
chr4_1 exon 6043194 6043874 6043194 ID=Msa0531970-mRNA-1:exon:2052;Parent=Msa0531970-mRNA-1
chr4_1 CDS 6043194 6043874 6043194 ID=Msa0531970-mRNA-1:cds;Parent=Msa0531970-mRNA-1
Gene Sequence

>Msa0531970

ATGGCCACAATGTCCTCCGCTCCACCCGTTCTCCCTGTCACCTCCGTCCCTCCACCATCAACCACCGCCGGATCCACCGTCTCTGGCACCGGATCCGACGTTCCGGTAAATTCCCCCGCCGTCCGTGTCCTCATCAACAACCTCTCTGAATCACTCCGCAACGGCCTCGCACAACGCCGTCCATGGACAGAACTCGTCGACCGTTCCGCTTTCAGCAAACCTGAATCCTTCTCCGACGCCACCCTCCGTGTCCGCAAAAACTACTCATACTTCCGTGTCAACTACTACGCCGTCGTCGCCGGAATTCTCGCTGTCTCTCTCCTCACAAATCCGTTCTCTCTCATCCTCCTCATTGGCCTCCTCGCTTCATGGACCTTCCTCTACCTCTTCCGTCCTACCGATCGTCCTCTCGTTCTCTTCGGTCGCACTTTCACCGATTTCGAAACGCTTATGATCCTCTCAGGACTCACGGTCTTCGTCGTTTTCCTCACCAGCGTTGGATCTGTTCTTGTTTCCGCCTTGATGCTCGGTGTTGCTGTTGTTTGTCTCCATGGAGCATTCCGTGCACCGGAGGATCTCTTCCTTGATGAACAGGATAATTCTCAGGCTACTGGTTTCCTCTCCTTCGTCCGTGCTCCTACTACCGGTGCCGCAGCTGTTCCTTCCTCCGGACGCGTTTGA
Protein sequence

>Msa0531970

MATMSSAPPVLPVTSVPPPSTTAGSTVSGTGSDVPVNSPAVRVLINNLSESLRNGLAQRRPWTELVDRSAFSKPESFSDATLRVRKNYSYFRVNYYAVVAGILAVSLLTNPFSLILLIGLLASWTFLYLFRPTDRPLVLFGRTFTDFETLMILSGLTVFVVFLTSVGSVLVSALMLGVAVVCLHGAFRAPEDLFLDEQDNSQATGFLSFVRAPTTGAAAVPSSGRV*