AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0089680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0089680 MtrunA17_Chr1g0208381 99.496 397 2 0 1 397 1 397 0.0 822
Msa0089680 MtrunA17_Chr6g0452631 45.985 411 203 2 4 396 23 432 3.46e-133 389
Msa0089680 MtrunA17_Chr4g0010141 50.286 350 173 1 48 397 71 419 3.80e-131 383
Msa0089680 MtrunA17_Chr4g0022501 51.289 349 167 2 48 396 87 432 4.19e-129 378
Msa0089680 MtrunA17_Chr2g0317441 44.235 425 202 5 1 397 7 424 6.20e-119 352
Msa0089680 MtrunA17_Chr1g0169461 47.863 351 177 4 47 396 93 438 4.37e-116 345
Msa0089680 MtrunA17_Chr6g0460801 45.251 358 185 4 46 397 52 404 2.82e-109 327
Msa0089680 MtrunA17_Chr7g0254121 42.579 411 203 6 5 397 4 399 8.24e-107 320
Msa0089680 MtrunA17_Chr4g0063621 45.429 350 156 3 48 396 73 388 5.79e-103 310
Msa0089680 MtrunA17_Chr4g0002191 43.836 365 200 4 35 397 46 407 5.20e-97 295
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0089680 AT1G71070.1 70.277 397 116 2 1 397 1 395 0.0 581
Msa0089680 AT5G39990.1 49.735 378 188 2 20 397 72 447 4.68e-130 381
Msa0089680 AT4G27480.2 44.917 423 200 5 2 397 5 421 1.16e-127 374
Msa0089680 AT4G27480.3 44.917 423 200 5 2 397 5 421 1.16e-127 374
Msa0089680 AT4G27480.1 44.917 423 200 5 2 397 5 421 1.16e-127 374
Msa0089680 AT3G15350.2 44.131 426 204 6 1 397 4 424 7.46e-124 365
Msa0089680 AT3G15350.1 44.131 426 204 6 1 397 4 424 7.46e-124 365
Msa0089680 AT1G03520.1 44.226 407 201 4 3 385 32 436 1.71e-123 365
Msa0089680 AT4G03340.1 44.498 418 204 4 4 396 33 447 9.60e-123 363
Msa0089680 AT5G15050.1 45.324 417 204 3 4 397 19 434 1.18e-122 362
Msa0089680 AT1G03520.2 49.558 339 169 1 47 385 11 347 3.32e-122 358
Msa0089680 AT1G53100.1 43.415 410 207 4 4 396 21 422 3.59e-116 345
Msa0089680 AT1G53100.2 43.970 398 198 4 4 384 21 410 1.34e-113 338
Msa0089680 AT4G03340.2 42.584 418 189 5 4 396 33 424 3.52e-111 332
Msa0089680 AT3G24040.1 47.293 351 182 3 47 396 66 414 3.31e-110 330
Msa0089680 AT3G03690.1 48.949 333 160 4 22 346 23 353 9.30e-108 322
Msa0089680 AT2G37585.1 46.286 350 166 3 48 397 57 384 1.60e-104 314
Msa0089680 AT3G03690.2 46.626 163 81 3 28 186 29 189 8.63e-41 144

Find 148 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACATTGAGCCGACCCTTTC+TGG 0.089306 1_2:-71267912 Msa0089680:CDS
ACAATTCTGGTGCAAAATTT+TGG 0.121049 1_2:-71271456 Msa0089680:five_prime_UTR
AGCTGATTGGATCACTTATT+TGG 0.145905 1_2:-71270888 Msa0089680:CDS
TTTGAAACTATTTGCGTTAA+TGG 0.174285 1_2:+71271323 None:intergenic
CACTGTTGTGTTCTTAAATT+CGG 0.206760 1_2:+71267781 None:intergenic
GTTCCCGCGATTCGGGCTTT+TGG 0.207442 1_2:-71270932 Msa0089680:CDS
TCCAATCAATCTTTACCTTT+TGG 0.279710 1_2:-71267004 Msa0089680:three_prime_UTR
CTTGGGGTGCTGTATTGTTT+TGG 0.298694 1_2:-71267204 Msa0089680:three_prime_UTR
GTGACTTACGATACATGATA+TGG 0.304470 1_2:-71267754 Msa0089680:CDS
TTTGGGTTAGATTGGTTGTT+GGG 0.307169 1_2:+71271565 None:intergenic
TAGTTCTGTTCCCGCGATTC+GGG 0.308166 1_2:-71270939 Msa0089680:CDS
TATCATAAACAGATGTATTA+AGG 0.314288 1_2:+71267702 None:intergenic
TTAGTTCTGTTCCCGCGATT+CGG 0.331879 1_2:-71270940 Msa0089680:CDS
TACTAAGAATCAAACAATTC+TGG 0.332293 1_2:-71271469 Msa0089680:five_prime_UTR
CCGGATCTTTCGTTTGTTGT+TGG 0.334358 1_2:-71271047 Msa0089680:CDS
GGTGCTCCGGTCGGAGGAGC+TGG 0.338394 1_2:-71267559 Msa0089680:CDS
CTCCTTGCTAAATATGTTCC+TGG 0.348702 1_2:+71268099 None:intergenic
TTGAAACTATTTGCGTTAAT+GGG 0.349369 1_2:+71271324 None:intergenic
GAGGTTTGTTAAAGAGGTCT+AGG 0.350070 1_2:+71271535 None:intergenic
GCTGATTGGATCACTTATTT+GGG 0.366048 1_2:-71270887 Msa0089680:CDS
TAATGGGTCGTTGAAGATCT+TGG 0.369877 1_2:+71271340 None:intergenic
CACTTGATTCAAGGCATCAT+TGG 0.369960 1_2:+71267156 None:intergenic
CCACATAGTGAAATTAGTTA+TGG 0.378228 1_2:-71271251 Msa0089680:exon
TTACAGAAGAAGATGGAGAT+TGG 0.385821 1_2:+71271592 None:intergenic
GGTGGATCCGTGCTCACAGT+GGG 0.387141 1_2:-71267534 Msa0089680:CDS
AATTAGATAGTGGATGGAAT+TGG 0.388021 1_2:-71270817 Msa0089680:CDS
TTTCTAGCCTTCTTGATGAC+TGG 0.393670 1_2:-71267457 Msa0089680:CDS
GCCAAAAGGTAAAGATTGAT+TGG 0.398599 1_2:+71267003 None:intergenic
AAGTGTGTTTGGTTAAAGTT+TGG 0.402278 1_2:+71271298 None:intergenic
AACCGTTATTTGCTTCATCT+TGG 0.403853 1_2:-71271007 Msa0089680:CDS
GAAAGTGAGGTTTGTTAAAG+AGG 0.407851 1_2:+71271529 None:intergenic
AGGAAGAGAGGTTCCATCTT+CGG 0.416614 1_2:+71267722 None:intergenic
GCACCAGGGGCATGGTGCTC+CGG 0.424727 1_2:-71267572 Msa0089680:CDS
GTTCCTGGATCAACTACAAT+AGG 0.433364 1_2:+71268114 None:intergenic
GGTCGCAACCGAGCTGCACC+AGG 0.434471 1_2:-71267587 Msa0089680:CDS
TACATCTGTTTATGATATGA+TGG 0.435748 1_2:-71267696 Msa0089680:CDS
TTATTTGCTTCATCTTGGTA+TGG 0.441251 1_2:-71271002 Msa0089680:CDS
GCTCCGGTCGGAGGAGCTGG+TGG 0.444083 1_2:-71267556 Msa0089680:CDS
TGCTAGGAATGAAGAGAGAC+AGG 0.450149 1_2:-71270978 Msa0089680:CDS
ACAAGATTTGAGAGTTGGAA+TGG 0.451548 1_2:-71267252 Msa0089680:three_prime_UTR
CAAGATTTGAGAGTTGGAAT+GGG 0.453375 1_2:-71267251 Msa0089680:three_prime_UTR
AGCTTCTTAGCCTGAGGACC+TGG 0.454024 1_2:+71267491 None:intergenic
ATTATGCTTAAATTAGATAG+TGG 0.455003 1_2:-71270827 Msa0089680:CDS
GTGAAGAGTTTGAATGCATC+AGG 0.457700 1_2:+71268039 None:intergenic
CACATAGTGAAATTAGTTAT+GGG 0.459674 1_2:-71271250 Msa0089680:exon
TTTGCATACTTTATCTCTGG+TGG 0.471087 1_2:-71271085 Msa0089680:CDS
GAATGAAGAGAGACAGGGTT+TGG 0.471453 1_2:-71270972 Msa0089680:CDS
ACCGAGCTGCACCAGGGGCA+TGG 0.472640 1_2:-71267580 Msa0089680:CDS
TATTCTTAAGCCAGGTCCTC+AGG 0.473164 1_2:-71267501 Msa0089680:CDS
GATTCTTAGTAATTGAATGT+TGG 0.475652 1_2:+71271481 None:intergenic
ACTGTTGTGTTCTTAAATTC+GGG 0.476266 1_2:+71267782 None:intergenic
AAGCCTATTGTAGTTGATCC+AGG 0.482669 1_2:-71268117 Msa0089680:CDS
AAATAAATGGCAAATTCTAC+TGG 0.482837 1_2:+71267344 None:intergenic
ATATCCTCCCACTTGATTCA+AGG 0.483958 1_2:+71267147 None:intergenic
TTTGGGAATGTTGATGTGGT+TGG 0.485305 1_2:-71270914 Msa0089680:CDS
TTTAAGAACACAACAGTGAA+TGG 0.486202 1_2:-71267776 Msa0089680:CDS
CGGTCGGAGGAGCTGGTGGG+TGG 0.486707 1_2:-71267552 Msa0089680:CDS
AGCATTTGCAAGACAGTTCG+AGG 0.489978 1_2:-71267660 Msa0089680:CDS
AGGTTTGTTAAAGAGGTCTA+GGG 0.490998 1_2:+71271536 None:intergenic
CTAAGAATAGAAACCATTGT+AGG 0.492565 1_2:-71267395 Msa0089680:three_prime_UTR
AAATACATTAGTAGCGTTCG+TGG 0.493054 1_2:+71267860 None:intergenic
TTCCCAAAAGCCCGAATCGC+GGG 0.495215 1_2:+71270929 None:intergenic
TGGGTTAGATTGGTTGTTGG+GGG 0.496329 1_2:+71271567 None:intergenic
TTGGGTTAGATTGGTTGTTG+GGG 0.497056 1_2:+71271566 None:intergenic
ATGTGGTTGGTAAAGCTGAT+TGG 0.497384 1_2:-71270901 Msa0089680:CDS
CGACCGGAGCACCATGCCCC+TGG 0.498967 1_2:+71267569 None:intergenic
GGGCATGGTGCTCCGGTCGG+AGG 0.500093 1_2:-71267565 Msa0089680:CDS
TTTGAGAGTTGGAATGGGGA+AGG 0.501833 1_2:-71267246 Msa0089680:three_prime_UTR
TTTCATACTCTTTCCATCCA+AGG 0.504506 1_2:+71268238 None:intergenic
CACCCACCAGCTCCTCCGAC+CGG 0.504628 1_2:+71267553 None:intergenic
TACTTTATCTCTGGTGGACA+TGG 0.505546 1_2:-71271079 Msa0089680:CDS
GGTAAAGATTGATTGGAGAA+TGG 0.507250 1_2:+71267010 None:intergenic
TGCTTAAATTAGATAGTGGA+TGG 0.509575 1_2:-71270823 Msa0089680:CDS
TTCATCTTGGTATGGATGCT+AGG 0.515475 1_2:-71270994 Msa0089680:CDS
GAAATTGAGGTCTCTATTCA+CGG 0.518088 1_2:+71268278 None:intergenic
ATGGGACAATCCTCCGAAGA+TGG 0.518158 1_2:-71267735 Msa0089680:CDS
ATTGATCACACTGGTGACCT+TGG 0.518359 1_2:-71268255 Msa0089680:CDS
GAGATAAAGTATGCAAAAGC+AGG 0.520795 1_2:+71271091 None:intergenic
ATCACACTGGTGACCTTGGA+TGG 0.525330 1_2:-71268251 Msa0089680:CDS
TTGAGAGTTGGAATGGGGAA+GGG 0.531110 1_2:-71267245 Msa0089680:three_prime_UTR
CAGGGGCATGGTGCTCCGGT+CGG 0.531153 1_2:-71267568 Msa0089680:CDS
CTCATCTGTACGATTCGAGC+AGG 0.531916 1_2:-71267078 Msa0089680:three_prime_UTR
CAGTGTGATCAATGAAATTG+AGG 0.531923 1_2:+71268265 None:intergenic
TTGATTCAAGGCATCATTGG+AGG 0.532182 1_2:+71267159 None:intergenic
TATAAGAAACAAGTGCCAAA+AGG 0.532569 1_2:+71266989 None:intergenic
CTCCGGTCGGAGGAGCTGGT+GGG 0.534852 1_2:-71267555 Msa0089680:CDS
CCATAACTAATTTCACTATG+TGG 0.535035 1_2:+71271251 None:intergenic
TTGTCAATCATATCCAGCAC+GGG 0.536748 1_2:+71267629 None:intergenic
GACTGCGCAGCTTCCTACAA+TGG 0.545250 1_2:+71267382 None:intergenic
GATGCATTCAAACTCTTCAC+TGG 0.546398 1_2:-71268036 Msa0089680:intron
TACCAAGATGAAGCAAATAA+CGG 0.548707 1_2:+71271005 None:intergenic
ACCATGCCCCTGGTGCAGCT+CGG 0.549540 1_2:+71267579 None:intergenic
TGTTGAACAAGTGATGGAAA+AGG 0.556082 1_2:+71271130 None:intergenic
AATGTAAAGTTATCTCAAGA+AGG 0.558147 1_2:-71267833 Msa0089680:CDS
CGAGGCTAATAACCCCGTGC+TGG 0.558930 1_2:-71267642 Msa0089680:CDS
AAAATGCAGAACTCCAGAAA+GGG 0.561090 1_2:+71267899 None:intergenic
CATAACTAATTTCACTATGT+GGG 0.563465 1_2:+71271252 None:intergenic
TCGTGATTGATATTACACTT+TGG 0.564002 1_2:+71267296 None:intergenic
GTGGACATGGTGATAAAGAC+CGG 0.566551 1_2:-71271066 Msa0089680:CDS
TTTGTCAATCATATCCAGCA+CGG 0.567860 1_2:+71267628 None:intergenic
TGACTTACGATACATGATAT+GGG 0.569521 1_2:-71267753 Msa0089680:CDS
TTAGTGTCTGATGTGATCAC+TGG 0.572046 1_2:+71267414 None:intergenic
AAGATGGAGATTGGAGATCA+CGG 0.572549 1_2:+71271601 None:intergenic
AAAGGTAAATTAGGAAAGTG+AGG 0.574143 1_2:+71271516 None:intergenic
ATCCAGGAACATATTTAGCA+AGG 0.575334 1_2:-71268101 Msa0089680:CDS
TGAAGCAAATAACGGTTCCT+CGG 0.576471 1_2:+71271013 None:intergenic
TTTCCATCACTTGTTCAACA+TGG 0.579342 1_2:-71271127 Msa0089680:CDS
GAAAATGCAGAACTCCAGAA+AGG 0.579663 1_2:+71267898 None:intergenic
TGTTGGCTGTTTATCATCCG+AGG 0.580159 1_2:-71271030 Msa0089680:CDS
CCAACAACAAACGAAAGATC+CGG 0.581010 1_2:+71271047 None:intergenic
ACATCACCCCACTGTGAGCA+CGG 0.583640 1_2:+71267527 None:intergenic
CAATGATGCCTTGAATCAAG+TGG 0.588015 1_2:-71267155 Msa0089680:three_prime_UTR
GAACCATGTTGAACAAGTGA+TGG 0.589262 1_2:+71271124 None:intergenic
AAGATTTGAGAGTTGGAATG+GGG 0.589878 1_2:-71267250 Msa0089680:three_prime_UTR
CTCAATTTCATTGATCACAC+TGG 0.590299 1_2:-71268264 Msa0089680:CDS
TCGCAACCGAGCTGCACCAG+GGG 0.595118 1_2:-71267585 Msa0089680:CDS
ATGCCGCTCAGGTTCACCGT+GGG 0.596264 1_2:-71267936 Msa0089680:intron
GATGTCAATATTCTTAAGCC+AGG 0.596661 1_2:-71267509 Msa0089680:CDS
GGGTGGATCCGTGCTCACAG+TGG 0.597115 1_2:-71267535 Msa0089680:CDS
TATCCTCTCATTACACAGGA+TGG 0.606449 1_2:-71270770 Msa0089680:intron
GCCTCAAGCTTCTTAGCCTG+AGG 0.607839 1_2:+71267485 None:intergenic
TATGATATGATGGCAGAAAG+TGG 0.609069 1_2:-71267686 Msa0089680:CDS
TTATGAAAGTGAAAAGCAAG+AGG 0.618474 1_2:+71267123 None:intergenic
TATTCACGGAGGAGAAAACA+TGG 0.623466 1_2:+71268292 None:intergenic
ATTCCCAAAAGCCCGAATCG+CGG 0.623889 1_2:+71270928 None:intergenic
AAGAGAGGTTCCATCTTCGG+AGG 0.624722 1_2:+71267725 None:intergenic
GTCGCAACCGAGCTGCACCA+GGG 0.627823 1_2:-71267586 Msa0089680:CDS
TGATTATCCTCTCATTACAC+AGG 0.628279 1_2:-71270774 Msa0089680:CDS
AGTGTAATATCAATCACGAA+AGG 0.629016 1_2:-71267292 Msa0089680:three_prime_UTR
ACAGATGTATTAAGGAAGAG+AGG 0.635101 1_2:+71267710 None:intergenic
TGCAGAACTCCAGAAAGGGT+CGG 0.636858 1_2:+71267903 None:intergenic
CATGCCGCTCAGGTTCACCG+TGG 0.638945 1_2:-71267937 Msa0089680:intron
ACGTAGCGTGATAGCAACAT+TGG 0.640755 1_2:+71270859 None:intergenic
TCCTCAGGCTAAGAAGCTTG+AGG 0.644545 1_2:-71267486 Msa0089680:CDS
ATAAAGTATGCAAAAGCAGG+AGG 0.645936 1_2:+71271094 None:intergenic
GTGCGGTCCAGTCATCAAGA+AGG 0.646737 1_2:+71267450 None:intergenic
ATACCATCCTGTGTAATGAG+AGG 0.650846 1_2:+71270767 None:intergenic
GGTCGGCTCAATGTGACCCA+CGG 0.654966 1_2:+71267920 None:intergenic
CTGGCACTGATTCGTCTGTG+CGG 0.656378 1_2:+71267433 None:intergenic
AATGATGCCTTGAATCAAGT+GGG 0.656561 1_2:-71267154 Msa0089680:three_prime_UTR
CTCGGTTGCGACCACCACGT+TGG 0.661759 1_2:+71267597 None:intergenic
CAAAACAATACAGCACCCCA+AGG 0.669000 1_2:+71267205 None:intergenic
ATTCACGGAGGAGAAAACAT+GGG 0.688994 1_2:+71268293 None:intergenic
GTGGATCCGTGCTCACAGTG+GGG 0.704097 1_2:-71267533 Msa0089680:CDS
GATGCCTTGAATCAAGTGGG+AGG 0.706727 1_2:-71267151 Msa0089680:three_prime_UTR
TGTCAATCATATCCAGCACG+GGG 0.714463 1_2:+71267630 None:intergenic
GCTAGGAATGAAGAGAGACA+GGG 0.727399 1_2:-71270977 Msa0089680:CDS
ATTGAGGTCTCTATTCACGG+AGG 0.783848 1_2:+71268281 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAACAATAAATTTTTTCAA+TGG + chr1_2:71268923-71268942 None:intergenic 10.0%
!!! CTTTGATTTTTTTTCTAATT+TGG - chr1_2:71268520-71268539 Msa0089680:intron 15.0%
!! GTATAATTAGATTAGTATTT+CGG + chr1_2:71269182-71269201 None:intergenic 15.0%
!! ATTTAAAGAGAAAATATAGT+GGG + chr1_2:71269586-71269605 None:intergenic 15.0%
!! AATTTAAAGAGAAAATATAG+TGG + chr1_2:71269587-71269606 None:intergenic 15.0%
!! TTTAAATTGTGAAAACATTA+AGG - chr1_2:71269599-71269618 Msa0089680:intron 15.0%
!! AATAAAAACATAAATAATCC+AGG + chr1_2:71270466-71270485 None:intergenic 15.0%
!! AATAGAAAAAATAATAGTCA+GGG + chr1_2:71270651-71270670 None:intergenic 15.0%
!! AAATAGAAAAAATAATAGTC+AGG + chr1_2:71270652-71270671 None:intergenic 15.0%
!!! TGTTTTTCTTTCAAAATAAA+TGG + chr1_2:71271303-71271322 None:intergenic 15.0%
!! ATTATGCTTAAATTAGATAG+TGG - chr1_2:71267804-71267823 Msa0089680:CDS 20.0%
!!! ATTTGAAATGCAGTATTAAT+TGG - chr1_2:71268143-71268162 Msa0089680:intron 20.0%
!! CACAAAAAAGTAATATTTCA+AGG + chr1_2:71268325-71268344 None:intergenic 20.0%
!!! TATTACTTTTTTGTGATGAA+AGG - chr1_2:71268330-71268349 Msa0089680:intron 20.0%
!!! TGTTTTCATCATTTTTTGAT+AGG - chr1_2:71268373-71268392 Msa0089680:intron 20.0%
!! TAGTATTATAGTCTAAATCA+TGG + chr1_2:71268582-71268601 None:intergenic 20.0%
!! TCTTAAAAATATATATTCCG+AGG - chr1_2:71268945-71268964 Msa0089680:intron 20.0%
!! ATGAGATATTCAACTATTTA+AGG + chr1_2:71269062-71269081 None:intergenic 20.0%
!! AATCTTTATTCGACTTTATA+AGG + chr1_2:71269262-71269281 None:intergenic 20.0%
!! TTATCTATAATGTAGATCTT+TGG - chr1_2:71269469-71269488 Msa0089680:intron 20.0%
!!! TGTTTTATAATTTATGTGTG+AGG - chr1_2:71270141-71270160 Msa0089680:intron 20.0%
!! TATCATAAACAGATGTATTA+AGG + chr1_2:71270932-71270951 None:intergenic 20.0%
!! TTGAAAGAAAAACAATTCTT+TGG - chr1_2:71271309-71271328 Msa0089680:five_prime_UTR 20.0%
!! TTTTTGTGGAAAGGTAAATT+AGG + chr1_2:71267127-71267146 None:intergenic 25.0%
!!! TTGAATGTTGGAATTTTTTG+TGG + chr1_2:71267141-71267160 None:intergenic 25.0%
! GATTCTTAGTAATTGAATGT+TGG + chr1_2:71267153-71267172 None:intergenic 25.0%
! TACTAAGAATCAAACAATTC+TGG - chr1_2:71267162-71267181 Msa0089680:three_prime_UTR 25.0%
!!! AATTTTGGAAATTTCTGATC+TGG - chr1_2:71267190-71267209 Msa0089680:three_prime_UTR 25.0%
!!! ATTTTGGAAATTTCTGATCT+GGG - chr1_2:71267191-71267210 Msa0089680:three_prime_UTR 25.0%
! TTGAAACTATTTGCGTTAAT+GGG + chr1_2:71267310-71267329 None:intergenic 25.0%
!! TTTGAAACTATTTGCGTTAA+TGG + chr1_2:71267311-71267330 None:intergenic 25.0%
! CATAACTAATTTCACTATGT+GGG + chr1_2:71267382-71267401 None:intergenic 25.0%
! CACATAGTGAAATTAGTTAT+GGG - chr1_2:71267381-71267400 Msa0089680:three_prime_UTR 25.0%
!!! TTGTGCATTTTATTTGATTG+TGG - chr1_2:71267922-71267941 Msa0089680:CDS 25.0%
! TATATATACAGTAATGAGTG+TGG - chr1_2:71267952-71267971 Msa0089680:intron 25.0%
! CCATGAAAATAGTGAATAAA+AGG + chr1_2:71268101-71268120 None:intergenic 25.0%
!! CCTTTTATTCACTATTTTCA+TGG - chr1_2:71268098-71268117 Msa0089680:CDS 25.0%
! AAGTATAAACCTTATACTTC+AGG + chr1_2:71268416-71268435 None:intergenic 25.0%
!! AAAAAAATCAAAGTACCATG+AGG + chr1_2:71268513-71268532 None:intergenic 25.0%
!! ACATGAATTTTACAGTTTAC+TGG - chr1_2:71268549-71268568 Msa0089680:intron 25.0%
! TAATACTATTGAGTTTGCAT+AGG - chr1_2:71268594-71268613 Msa0089680:intron 25.0%
! TTATACAAATCTAAGAAGAC+TGG - chr1_2:71269196-71269215 Msa0089680:intron 25.0%
! AATATAGATACCAAGTTCTA+CGG + chr1_2:71270072-71270091 None:intergenic 25.0%
! CAAATTGAGATTTGTGAATA+TGG + chr1_2:71270245-71270264 None:intergenic 25.0%
! AATGTAAAGTTATCTCAAGA+AGG - chr1_2:71270798-71270817 Msa0089680:CDS 25.0%
! TACATCTGTTTATGATATGA+TGG - chr1_2:71270935-71270954 Msa0089680:CDS 25.0%
! AAATAAATGGCAAATTCTAC+TGG + chr1_2:71271290-71271309 None:intergenic 25.0%
! AAAAAACAAGATTTGAGAGT+TGG - chr1_2:71271374-71271393 Msa0089680:five_prime_UTR 25.0%
!!! GGTTTTTTTTTGGGTTAGAT+TGG + chr1_2:71267077-71267096 None:intergenic 30.0%
AAAGGTAAATTAGGAAAGTG+AGG + chr1_2:71267118-71267137 None:intergenic 30.0%
!!! TGTTGGAATTTTTTGTGGAA+AGG + chr1_2:71267136-71267155 None:intergenic 30.0%
! ACAATTCTGGTGCAAAATTT+TGG - chr1_2:71267175-71267194 Msa0089680:three_prime_UTR 30.0%
AAGTGTGTTTGGTTAAAGTT+TGG + chr1_2:71267336-71267355 None:intergenic 30.0%
!! TAGATTTTGAGAAGTGTGTT+TGG + chr1_2:71267347-71267366 None:intergenic 30.0%
CCATAACTAATTTCACTATG+TGG + chr1_2:71267383-71267402 None:intergenic 30.0%
CCACATAGTGAAATTAGTTA+TGG - chr1_2:71267380-71267399 Msa0089680:three_prime_UTR 30.0%
TTATGGGAGCTGAAAAAAAA+TGG - chr1_2:71267397-71267416 Msa0089680:three_prime_UTR 30.0%
TACCAAGATGAAGCAAATAA+CGG + chr1_2:71267629-71267648 None:intergenic 30.0%
TTATTTGCTTCATCTTGGTA+TGG - chr1_2:71267629-71267648 Msa0089680:CDS 30.0%
!! TGCTTAAATTAGATAGTGGA+TGG - chr1_2:71267808-71267827 Msa0089680:CDS 30.0%
!! AATTAGATAGTGGATGGAAT+TGG - chr1_2:71267814-71267833 Msa0089680:CDS 30.0%
TGCAGTATTAATTGGAAACA+TGG - chr1_2:71268151-71268170 Msa0089680:intron 30.0%
GGGAAATGATTTCTTATCAT+TGG - chr1_2:71268235-71268254 Msa0089680:intron 30.0%
! CATAGATGCCTTTTCTTTTT+AGG - chr1_2:71268298-71268317 Msa0089680:CDS 30.0%
TTCAAGGACCTAAAAAGAAA+AGG + chr1_2:71268309-71268328 None:intergenic 30.0%
! ATTTGAGATCCTGAAGTATA+AGG - chr1_2:71268404-71268423 Msa0089680:intron 30.0%
GTTATAACCTGAAGACATTT+CGG + chr1_2:71268450-71268469 None:intergenic 30.0%
! ATGTCTTCAGGTTATAACAT+TGG - chr1_2:71268452-71268471 Msa0089680:intron 30.0%
! TTCAGGTTATAACATTGGAT+TGG - chr1_2:71268457-71268476 Msa0089680:intron 30.0%
!! TGATTTGTTGTCCATACATA+AGG - chr1_2:71268639-71268658 Msa0089680:intron 30.0%
TACCAAACATTCCTTATGTA+TGG + chr1_2:71268653-71268672 None:intergenic 30.0%
AAGTCAAGAAATTGGTTAAG+AGG - chr1_2:71268687-71268706 Msa0089680:intron 30.0%
AGTCAAGAAATTGGTTAAGA+GGG - chr1_2:71268688-71268707 Msa0089680:intron 30.0%
AAGTAGATAGAGATAGTAGA+AGG - chr1_2:71268774-71268793 Msa0089680:intron 30.0%
AGTAGATAGAGATAGTAGAA+GGG - chr1_2:71268775-71268794 Msa0089680:intron 30.0%
! TCAGATAAGGCATTTATAGA+AGG - chr1_2:71268822-71268841 Msa0089680:intron 30.0%
! CAGATAAGGCATTTATAGAA+GGG - chr1_2:71268823-71268842 Msa0089680:intron 30.0%
!! ATTTATAGAAGGGTGCTTAT+AGG - chr1_2:71268833-71268852 Msa0089680:intron 30.0%
!! TTTATAGAAGGGTGCTTATA+GGG - chr1_2:71268834-71268853 Msa0089680:intron 30.0%
AGTTTGATGAATCTATACCT+CGG + chr1_2:71268965-71268984 None:intergenic 30.0%
CTCATGCAGTTATAATTGTT+AGG - chr1_2:71269077-71269096 Msa0089680:intron 30.0%
ATTTCGGTTTCTCAATTCAT+AGG + chr1_2:71269166-71269185 None:intergenic 30.0%
AGTTATCACAAAAGATAGAG+TGG - chr1_2:71269378-71269397 Msa0089680:intron 30.0%
TCAACTCTGTCTTGATTAAT+TGG - chr1_2:71269668-71269687 Msa0089680:intron 30.0%
! ATTTTGTGAAATGAGTGAGT+GGG + chr1_2:71269735-71269754 None:intergenic 30.0%
! TATTTTGTGAAATGAGTGAG+TGG + chr1_2:71269736-71269755 None:intergenic 30.0%
AGAAAGGAGAATAAATGGAA+GGG + chr1_2:71269800-71269819 None:intergenic 30.0%
TTTAGGCTGATGAAAATATG+TGG + chr1_2:71269957-71269976 None:intergenic 30.0%
!! TATTTATCTGCTTTGGTTCT+TGG - chr1_2:71269995-71270014 Msa0089680:intron 30.0%
GAAGAGACATGAGATATATA+AGG + chr1_2:71270223-71270242 None:intergenic 30.0%
ACAATCATTAGAAAGGTCTT+AGG + chr1_2:71270283-71270302 None:intergenic 30.0%
TATGAGCACAATCATTAGAA+AGG + chr1_2:71270290-71270309 None:intergenic 30.0%
! TTTTATTCAATTGCACATGC+AGG - chr1_2:71270479-71270498 Msa0089680:intron 30.0%
ACTGTTGTGTTCTTAAATTC+GGG + chr1_2:71270852-71270871 None:intergenic 30.0%
CACTGTTGTGTTCTTAAATT+CGG + chr1_2:71270853-71270872 None:intergenic 30.0%
TTTAAGAACACAACAGTGAA+TGG - chr1_2:71270855-71270874 Msa0089680:CDS 30.0%
TGACTTACGATACATGATAT+GGG - chr1_2:71270878-71270897 Msa0089680:CDS 30.0%
CTAAGAATAGAAACCATTGT+AGG - chr1_2:71271236-71271255 Msa0089680:exon 30.0%
TCGTGATTGATATTACACTT+TGG + chr1_2:71271338-71271357 None:intergenic 30.0%
AGTGTAATATCAATCACGAA+AGG - chr1_2:71271339-71271358 Msa0089680:five_prime_UTR 30.0%
!! TTTTGGAGGCTTGATATTTA+TGG - chr1_2:71271444-71271463 Msa0089680:five_prime_UTR 30.0%
TTATGAAAGTGAAAAGCAAG+AGG + chr1_2:71271511-71271530 None:intergenic 30.0%
!! GATAGCTAGCTTATTCTTTT+TGG - chr1_2:71271575-71271594 Msa0089680:five_prime_UTR 30.0%
! TCCAATCAATCTTTACCTTT+TGG - chr1_2:71271627-71271646 Msa0089680:five_prime_UTR 30.0%
TATAAGAAACAAGTGCCAAA+AGG + chr1_2:71271645-71271664 None:intergenic 30.0%
TTACAGAAGAAGATGGAGAT+TGG + chr1_2:71267042-71267061 None:intergenic 35.0%
! TTTGGGTTAGATTGGTTGTT+GGG + chr1_2:71267069-71267088 None:intergenic 35.0%
!!! TTTTGGGTTAGATTGGTTGT+TGG + chr1_2:71267070-71267089 None:intergenic 35.0%
!!! GAGGTCTAGGGTTTTTTTTT+GGG + chr1_2:71267086-71267105 None:intergenic 35.0%
!!! AGAGGTCTAGGGTTTTTTTT+TGG + chr1_2:71267087-71267106 None:intergenic 35.0%
!! AGGTTTGTTAAAGAGGTCTA+GGG + chr1_2:71267098-71267117 None:intergenic 35.0%
!! GAAAGTGAGGTTTGTTAAAG+AGG + chr1_2:71267105-71267124 None:intergenic 35.0%
! TGTTGAACAAGTGATGGAAA+AGG + chr1_2:71267504-71267523 None:intergenic 35.0%
TTTCCATCACTTGTTCAACA+TGG - chr1_2:71267504-71267523 Msa0089680:CDS 35.0%
ATAAAGTATGCAAAAGCAGG+AGG + chr1_2:71267540-71267559 None:intergenic 35.0%
GAGATAAAGTATGCAAAAGC+AGG + chr1_2:71267543-71267562 None:intergenic 35.0%
! GCTTTTGCATACTTTATCTC+TGG - chr1_2:71267543-71267562 Msa0089680:CDS 35.0%
TTTGCATACTTTATCTCTGG+TGG - chr1_2:71267546-71267565 Msa0089680:CDS 35.0%
AACCGTTATTTGCTTCATCT+TGG - chr1_2:71267624-71267643 Msa0089680:CDS 35.0%
AGCTGATTGGATCACTTATT+TGG - chr1_2:71267743-71267762 Msa0089680:CDS 35.0%
GCTGATTGGATCACTTATTT+GGG - chr1_2:71267744-71267763 Msa0089680:CDS 35.0%
TGATTATCCTCTCATTACAC+AGG - chr1_2:71267857-71267876 Msa0089680:CDS 35.0%
! ACAGGATGGTATGCAAATTT+TGG - chr1_2:71267875-71267894 Msa0089680:CDS 35.0%
!! GTGTTTTAAACTAACGAGCT+TGG - chr1_2:71268002-71268021 Msa0089680:intron 35.0%
TATTGAGATTGTTCTGTGTG+TGG - chr1_2:71268033-71268052 Msa0089680:intron 35.0%
! TATTCACTATTTTCATGGCC+TGG - chr1_2:71268103-71268122 Msa0089680:CDS 35.0%
TTTCCTAAATCAATCGAACC+AGG + chr1_2:71268124-71268143 None:intergenic 35.0%
TAATGCAGAACACGTAACTT+TGG + chr1_2:71268213-71268232 None:intergenic 35.0%
AGTTACGTGTTCTGCATTAT+AGG - chr1_2:71268214-71268233 Msa0089680:intron 35.0%
GTTACGTGTTCTGCATTATA+GGG - chr1_2:71268215-71268234 Msa0089680:intron 35.0%
AATGATACCGAAATGTCTTC+AGG - chr1_2:71268440-71268459 Msa0089680:intron 35.0%
GTCCATACATAAGGAATGTT+TGG - chr1_2:71268648-71268667 Msa0089680:intron 35.0%
AATTTCTTGACTTCACTTCC+TGG + chr1_2:71268680-71268699 None:intergenic 35.0%
AGGAAGTGAAGTCAAGAAAT+TGG - chr1_2:71268679-71268698 Msa0089680:intron 35.0%
GTCAAGAAATTGGTTAAGAG+GGG - chr1_2:71268689-71268708 Msa0089680:intron 35.0%
TCAAGAAATTGGTTAAGAGG+GGG - chr1_2:71268690-71268709 Msa0089680:intron 35.0%
GGGCTATGAAAAGAGTAAAA+AGG - chr1_2:71268710-71268729 Msa0089680:intron 35.0%
! AAAAGGTGTACAGTTGAAAC+AGG - chr1_2:71268727-71268746 Msa0089680:intron 35.0%
! AAAGGTGTACAGTTGAAACA+GGG - chr1_2:71268728-71268747 Msa0089680:intron 35.0%
!! AGATAGTAGAAGGGTATTGA+AGG - chr1_2:71268784-71268803 Msa0089680:intron 35.0%
!! TTATAGAAGGGTGCTTATAG+GGG - chr1_2:71268835-71268854 Msa0089680:intron 35.0%
AAACTACCTCTATATGCTGA+GGG - chr1_2:71268980-71268999 Msa0089680:intron 35.0%
GAAACTTTCTGTGAAGAGAT+TGG - chr1_2:71269011-71269030 Msa0089680:intron 35.0%
ATGCAATCAGAAGAAACTCT+TGG + chr1_2:71269116-71269135 None:intergenic 35.0%
TACAAATCTAAGAAGACTGG+AGG - chr1_2:71269199-71269218 Msa0089680:intron 35.0%
!! TTCTAGTTGCAGGGATTTTT+AGG - chr1_2:71269233-71269252 Msa0089680:intron 35.0%
GATTCCAGTGCTAAATTAGT+AGG - chr1_2:71269278-71269297 Msa0089680:intron 35.0%
ACTACCTACTAATTTAGCAC+TGG + chr1_2:71269285-71269304 None:intergenic 35.0%
AGTAGGTAGTCTAACTGATA+TGG - chr1_2:71269295-71269314 Msa0089680:intron 35.0%
AAGTTGAGTTCATTATCGCT+GGG - chr1_2:71269438-71269457 Msa0089680:intron 35.0%
TAGCTTCATTCACTATCATG+AGG + chr1_2:71269504-71269523 None:intergenic 35.0%
AGGTATATACATTGTCAGCA+AGG + chr1_2:71269626-71269645 None:intergenic 35.0%
GAATAAATGGAAGGGAACAA+AGG + chr1_2:71269792-71269811 None:intergenic 35.0%
GAGAAAGGAGAATAAATGGA+AGG + chr1_2:71269801-71269820 None:intergenic 35.0%
GGCAACATATTTATCTGCTT+TGG - chr1_2:71269988-71270007 Msa0089680:intron 35.0%
AATGCTTTGTGCTTAGTATG+AGG + chr1_2:71270033-71270052 None:intergenic 35.0%
TCATACTAAGCACAAAGCAT+TGG - chr1_2:71270032-71270051 Msa0089680:intron 35.0%
GAAATTGAGGTCTCTATTCA+CGG + chr1_2:71270356-71270375 None:intergenic 35.0%
CAGTGTGATCAATGAAATTG+AGG + chr1_2:71270369-71270388 None:intergenic 35.0%
CTCAATTTCATTGATCACAC+TGG - chr1_2:71270367-71270386 Msa0089680:intron 35.0%
TTTCATACTCTTTCCATCCA+AGG + chr1_2:71270396-71270415 None:intergenic 35.0%
TGAATCATACCTCTACTTTG+TGG - chr1_2:71270424-71270443 Msa0089680:intron 35.0%
ATCCAGGAACATATTTAGCA+AGG - chr1_2:71270530-71270549 Msa0089680:intron 35.0%
AAAATGCAGAACTCCAGAAA+GGG + chr1_2:71270735-71270754 None:intergenic 35.0%
!!! TTTCTGGAGTTCTGCATTTT+CGG - chr1_2:71270735-71270754 Msa0089680:intron 35.0%
AAATACATTAGTAGCGTTCG+TGG + chr1_2:71270774-71270793 None:intergenic 35.0%
GTGACTTACGATACATGATA+TGG - chr1_2:71270877-71270896 Msa0089680:CDS 35.0%
ACAGATGTATTAAGGAAGAG+AGG + chr1_2:71270924-71270943 None:intergenic 35.0%
TATGATATGATGGCAGAAAG+TGG - chr1_2:71270945-71270964 Msa0089680:CDS 35.0%
TTTGTCAATCATATCCAGCA+CGG + chr1_2:71271006-71271025 None:intergenic 35.0%
GACAAAAAAATTCTCCAACG+TGG - chr1_2:71271020-71271039 Msa0089680:CDS 35.0%
AAAAAAATTCTCCAACGTGG+TGG - chr1_2:71271023-71271042 Msa0089680:CDS 35.0%
GATGTCAATATTCTTAAGCC+AGG - chr1_2:71271122-71271141 Msa0089680:CDS 35.0%
ACAAGATTTGAGAGTTGGAA+TGG - chr1_2:71271379-71271398 Msa0089680:five_prime_UTR 35.0%
CAAGATTTGAGAGTTGGAAT+GGG - chr1_2:71271380-71271399 Msa0089680:five_prime_UTR 35.0%
AAGATTTGAGAGTTGGAATG+GGG - chr1_2:71271381-71271400 Msa0089680:five_prime_UTR 35.0%
!! AAATGCATTTTGATGAGCCT+TGG - chr1_2:71271409-71271428 Msa0089680:five_prime_UTR 35.0%
!! AATGCATTTTGATGAGCCTT+GGG - chr1_2:71271410-71271429 Msa0089680:five_prime_UTR 35.0%
AATGATGCCTTGAATCAAGT+GGG - chr1_2:71271477-71271496 Msa0089680:five_prime_UTR 35.0%
GGTAAAGATTGATTGGAGAA+TGG + chr1_2:71271624-71271643 None:intergenic 35.0%
GCCAAAAGGTAAAGATTGAT+TGG + chr1_2:71271631-71271650 None:intergenic 35.0%
AAGATGGAGATTGGAGATCA+CGG + chr1_2:71267033-71267052 None:intergenic 40.0%
! TTGGGTTAGATTGGTTGTTG+GGG + chr1_2:71267068-71267087 None:intergenic 40.0%
!! GAGGTTTGTTAAAGAGGTCT+AGG + chr1_2:71267099-71267118 None:intergenic 40.0%
! TAATGGGTCGTTGAAGATCT+TGG + chr1_2:71267294-71267313 None:intergenic 40.0%
GAACCATGTTGAACAAGTGA+TGG + chr1_2:71267510-71267529 None:intergenic 40.0%
! TACTTTATCTCTGGTGGACA+TGG - chr1_2:71267552-71267571 Msa0089680:CDS 40.0%
CCAACAACAAACGAAAGATC+CGG + chr1_2:71267587-71267606 None:intergenic 40.0%
TGAAGCAAATAACGGTTCCT+CGG + chr1_2:71267621-71267640 None:intergenic 40.0%
TTCATCTTGGTATGGATGCT+AGG - chr1_2:71267637-71267656 Msa0089680:CDS 40.0%
TTTGGGAATGTTGATGTGGT+TGG - chr1_2:71267717-71267736 Msa0089680:CDS 40.0%
!! ATGTGGTTGGTAAAGCTGAT+TGG - chr1_2:71267730-71267749 Msa0089680:CDS 40.0%
TATCCTCTCATTACACAGGA+TGG - chr1_2:71267861-71267880 Msa0089680:CDS 40.0%
ATACCATCCTGTGTAATGAG+AGG + chr1_2:71267867-71267886 None:intergenic 40.0%
GTAATGAGTGTGGTGTGAAT+TGG - chr1_2:71267962-71267981 Msa0089680:intron 40.0%
!! TGTGGTGGTTTGGTATTCAT+TGG - chr1_2:71268051-71268070 Msa0089680:CDS 40.0%
! ATCAAAGTACCATGAGGACA+GGG + chr1_2:71268507-71268526 None:intergenic 40.0%
! AATCAAAGTACCATGAGGAC+AGG + chr1_2:71268508-71268527 None:intergenic 40.0%
! AGGAATGTTTGGTAACATCC+AGG - chr1_2:71268659-71268678 Msa0089680:intron 40.0%
AAGGTGTACAGTTGAAACAG+GGG - chr1_2:71268729-71268748 Msa0089680:intron 40.0%
TGAAACAGGGGTCACAAATA+AGG - chr1_2:71268741-71268760 Msa0089680:intron 40.0%
GAAACAGGGGTCACAAATAA+GGG - chr1_2:71268742-71268761 Msa0089680:intron 40.0%
AAACAGGGGTCACAAATAAG+GGG - chr1_2:71268743-71268762 Msa0089680:intron 40.0%
!! GTAGAAGGGTATTGAAGGAA+CGG - chr1_2:71268789-71268808 Msa0089680:intron 40.0%
!! TAGAAGGGTATTGAAGGAAC+GGG - chr1_2:71268790-71268809 Msa0089680:intron 40.0%
CAAACTACCTCTATATGCTG+AGG - chr1_2:71268979-71268998 Msa0089680:intron 40.0%
AATCTAAGAAGACTGGAGGA+TGG - chr1_2:71269203-71269222 Msa0089680:intron 40.0%
CTAACTGATATGGTGACTAG+AGG - chr1_2:71269305-71269324 Msa0089680:intron 40.0%
AAAAGATAGAGTGGTGTGAG+TGG - chr1_2:71269387-71269406 Msa0089680:intron 40.0%
AAAGATAGAGTGGTGTGAGT+GGG - chr1_2:71269388-71269407 Msa0089680:intron 40.0%
GAAGTTGAGTTCATTATCGC+TGG - chr1_2:71269437-71269456 Msa0089680:intron 40.0%
AGTTGAGTTCATTATCGCTG+GGG - chr1_2:71269439-71269458 Msa0089680:intron 40.0%
TAGTGAATGAAGCTACCAAC+TGG - chr1_2:71269509-71269528 Msa0089680:intron 40.0%
GTTTGCTTTCGCATTTGCAA+GGG + chr1_2:71269562-71269581 None:intergenic 40.0%
TGTTTGCTTTCGCATTTGCA+AGG + chr1_2:71269563-71269582 None:intergenic 40.0%
ACAAAGAAGAGAGAAGGAGT+TGG + chr1_2:71269767-71269786 None:intergenic 40.0%
AAGGAGACAAAGAAGAGAGA+AGG + chr1_2:71269773-71269792 None:intergenic 40.0%
GGAGGAGAAAGGAGAATAAA+TGG + chr1_2:71269805-71269824 None:intergenic 40.0%
ACATAACCTGAACGAATGAG+CGG + chr1_2:71269861-71269880 None:intergenic 40.0%
! TGACACAAACTGTTTGAGGT+TGG - chr1_2:71269931-71269950 Msa0089680:intron 40.0%
ATACCAAGTTCTACGGTCAT+CGG + chr1_2:71270065-71270084 None:intergenic 40.0%
ATTCACGGAGGAGAAAACAT+GGG + chr1_2:71270341-71270360 None:intergenic 40.0%
TATTCACGGAGGAGAAAACA+TGG + chr1_2:71270342-71270361 None:intergenic 40.0%
GAATAAGTGCCACAAAGTAG+AGG + chr1_2:71270436-71270455 None:intergenic 40.0%
CTTTGTGGCACTTATTCAGT+TGG - chr1_2:71270439-71270458 Msa0089680:intron 40.0%
AAGCCTATTGTAGTTGATCC+AGG - chr1_2:71270514-71270533 Msa0089680:intron 40.0%
GTTCCTGGATCAACTACAAT+AGG + chr1_2:71270520-71270539 None:intergenic 40.0%
CTCCTTGCTAAATATGTTCC+TGG + chr1_2:71270535-71270554 None:intergenic 40.0%
GTGAAGAGTTTGAATGCATC+AGG + chr1_2:71270595-71270614 None:intergenic 40.0%
GATGCATTCAAACTCTTCAC+TGG - chr1_2:71270595-71270614 Msa0089680:intron 40.0%
GAAAATGCAGAACTCCAGAA+AGG + chr1_2:71270736-71270755 None:intergenic 40.0%
TTGTCAATCATATCCAGCAC+GGG + chr1_2:71271005-71271024 None:intergenic 40.0%
! TTTCTAGCCTTCTTGATGAC+TGG - chr1_2:71271174-71271193 Msa0089680:CDS 40.0%
TTAGTGTCTGATGTGATCAC+TGG + chr1_2:71271220-71271239 None:intergenic 40.0%
!! ATGCATTTTGATGAGCCTTG+GGG - chr1_2:71271411-71271430 Msa0089680:five_prime_UTR 40.0%
! TTGATTCAAGGCATCATTGG+AGG + chr1_2:71271475-71271494 None:intergenic 40.0%
! CACTTGATTCAAGGCATCAT+TGG + chr1_2:71271478-71271497 None:intergenic 40.0%
CAATGATGCCTTGAATCAAG+TGG - chr1_2:71271476-71271495 Msa0089680:five_prime_UTR 40.0%
ATATCCTCCCACTTGATTCA+AGG + chr1_2:71271487-71271506 None:intergenic 40.0%
! TGGGTTAGATTGGTTGTTGG+GGG + chr1_2:71267067-71267086 None:intergenic 45.0%
GTGGACATGGTGATAAAGAC+CGG - chr1_2:71267565-71267584 Msa0089680:CDS 45.0%
!! CCGGATCTTTCGTTTGTTGT+TGG - chr1_2:71267584-71267603 Msa0089680:CDS 45.0%
! TGTTGGCTGTTTATCATCCG+AGG - chr1_2:71267601-71267620 Msa0089680:CDS 45.0%
TGCTAGGAATGAAGAGAGAC+AGG - chr1_2:71267653-71267672 Msa0089680:CDS 45.0%
GCTAGGAATGAAGAGAGACA+GGG - chr1_2:71267654-71267673 Msa0089680:CDS 45.0%
GAATGAAGAGAGACAGGGTT+TGG - chr1_2:71267659-71267678 Msa0089680:CDS 45.0%
!! TTAGTTCTGTTCCCGCGATT+CGG - chr1_2:71267691-71267710 Msa0089680:CDS 45.0%
!! GGCTTTTGGGAATGTTGATG+TGG - chr1_2:71267713-71267732 Msa0089680:CDS 45.0%
ACGTAGCGTGATAGCAACAT+TGG + chr1_2:71267775-71267794 None:intergenic 45.0%
TGAGATTGTTCTGTGTGTGG+TGG - chr1_2:71268036-71268055 Msa0089680:intron 45.0%
TTGTTCTGTGTGTGGTGGTT+TGG - chr1_2:71268041-71268060 Msa0089680:CDS 45.0%
! TGGCCTGGTTCGATTGATTT+AGG - chr1_2:71268118-71268137 Msa0089680:CDS 45.0%
TAAAATGAGCCCTGTCCTCA+TGG - chr1_2:71268495-71268514 Msa0089680:intron 45.0%
AGCAAAGAGGAACAGGCAAA+GGG + chr1_2:71268892-71268911 None:intergenic 45.0%
TGTAACCAGCAAAGAGGAAC+AGG + chr1_2:71268899-71268918 None:intergenic 45.0%
AATGGCTGTAACCAGCAAAG+AGG + chr1_2:71268905-71268924 None:intergenic 45.0%
!! TGAAGAGATTGGTTCTGAGC+TGG - chr1_2:71269022-71269041 Msa0089680:intron 45.0%
! TGGCATGGTATTCTAGTTGC+AGG - chr1_2:71269223-71269242 Msa0089680:intron 45.0%
! GGCATGGTATTCTAGTTGCA+GGG - chr1_2:71269224-71269243 Msa0089680:intron 45.0%
AAGATAGAGTGGTGTGAGTG+GGG - chr1_2:71269389-71269408 Msa0089680:intron 45.0%
GTTCAATGTGAAGCTCCAGT+TGG + chr1_2:71269527-71269546 None:intergenic 45.0%
GCAGGGGAAAAAATCAACAG+AGG + chr1_2:71269646-71269665 None:intergenic 45.0%
TCAAGACAGAGTTGAGAGCA+GGG + chr1_2:71269663-71269682 None:intergenic 45.0%
ATCAAGACAGAGTTGAGAGC+AGG + chr1_2:71269664-71269683 None:intergenic 45.0%
GTGGGTGTCAGATATTGATG+TGG + chr1_2:71269717-71269736 None:intergenic 45.0%
! GAAGAGAGAAGGAGTTGGTT+TGG + chr1_2:71269762-71269781 None:intergenic 45.0%
TTTGCATCAGAACTGTGCAG+AGG - chr1_2:71269895-71269914 Msa0089680:intron 45.0%
TGGCTGACACAAACTGTTTG+AGG - chr1_2:71269927-71269946 Msa0089680:intron 45.0%
TCAGCCTAAAGATTGCGAAC+TGG - chr1_2:71269967-71269986 Msa0089680:intron 45.0%
GTTGCCAGTTCGCAATCTTT+AGG + chr1_2:71269974-71269993 None:intergenic 45.0%
!! TGCTTTGGTTCTTGGAGTTG+TGG - chr1_2:71270003-71270022 Msa0089680:intron 45.0%
ATTGAGGTCTCTATTCACGG+AGG + chr1_2:71270353-71270372 None:intergenic 45.0%
ATTGATCACACTGGTGACCT+TGG - chr1_2:71270376-71270395 Msa0089680:intron 45.0%
! GTAGAGGTATGATTCAGCAG+TGG + chr1_2:71270420-71270439 None:intergenic 45.0%
! TGGAGTTCTGCATTTTCGGT+TGG - chr1_2:71270739-71270758 Msa0089680:intron 45.0%
! GGAGTTCTGCATTTTCGGTT+GGG - chr1_2:71270740-71270759 Msa0089680:intron 45.0%
AGGAAGAGAGGTTCCATCTT+CGG + chr1_2:71270912-71270931 None:intergenic 45.0%
AGCATTTGCAAGACAGTTCG+AGG - chr1_2:71270971-71270990 Msa0089680:CDS 45.0%
TGTCAATCATATCCAGCACG+GGG + chr1_2:71271004-71271023 None:intergenic 45.0%
TATTCTTAAGCCAGGTCCTC+AGG - chr1_2:71271130-71271149 Msa0089680:CDS 45.0%
TTTGAGAGTTGGAATGGGGA+AGG - chr1_2:71271385-71271404 Msa0089680:five_prime_UTR 45.0%
TTGAGAGTTGGAATGGGGAA+GGG - chr1_2:71271386-71271405 Msa0089680:five_prime_UTR 45.0%
CAAAACAATACAGCACCCCA+AGG + chr1_2:71271429-71271448 None:intergenic 45.0%
!!! CTTGGGGTGCTGTATTGTTT+TGG - chr1_2:71271427-71271446 Msa0089680:five_prime_UTR 45.0%
GGGGGAGTTACAGAAGAAGA+TGG + chr1_2:71267049-71267068 None:intergenic 50.0%
! TAGTTCTGTTCCCGCGATTC+GGG - chr1_2:71267692-71267711 Msa0089680:CDS 50.0%
ATTCCCAAAAGCCCGAATCG+CGG + chr1_2:71267706-71267725 None:intergenic 50.0%
!! AAGGGTATTGAAGGAACGGG+TGG - chr1_2:71268793-71268812 Msa0089680:intron 50.0%
GTATTGAAGGAACGGGTGGA+GGG - chr1_2:71268797-71268816 Msa0089680:intron 50.0%
!! AGAAGGGTGCTTATAGGGGA+TGG - chr1_2:71268839-71268858 Msa0089680:intron 50.0%
!! GAAGGGTGCTTATAGGGGAT+GGG - chr1_2:71268840-71268859 Msa0089680:intron 50.0%
!! AAGGGTGCTTATAGGGGATG+GGG - chr1_2:71268841-71268860 Msa0089680:intron 50.0%
GCAAAGAGGAACAGGCAAAG+GGG + chr1_2:71268891-71268910 None:intergenic 50.0%
CAGCAAAGAGGAACAGGCAA+AGG + chr1_2:71268893-71268912 None:intergenic 50.0%
CTTTGCCTGTTCCTCTTTGC+TGG - chr1_2:71268891-71268910 Msa0089680:intron 50.0%
CGAGTTCCCTCAGCATATAG+AGG + chr1_2:71268989-71269008 None:intergenic 50.0%
AAGAAGACTGGAGGATGGCA+TGG - chr1_2:71269208-71269227 Msa0089680:intron 50.0%
GCGTCACGATTCATGGGAAA+TGG - chr1_2:71269415-71269434 Msa0089680:intron 50.0%
CAAGACAGAGTTGAGAGCAG+GGG + chr1_2:71269662-71269681 None:intergenic 50.0%
! GTGGAAGTGATGGAGGAGAA+AGG + chr1_2:71269816-71269835 None:intergenic 50.0%
! AGAGAGTGTGGAAGTGATGG+AGG + chr1_2:71269823-71269842 None:intergenic 50.0%
! GTGAGAGAGTGTGGAAGTGA+TGG + chr1_2:71269826-71269845 None:intergenic 50.0%
AGTGGTGAAGTGAGAGAGTG+TGG + chr1_2:71269835-71269854 None:intergenic 50.0%
TCTCCGATGACCGTAGAACT+TGG - chr1_2:71270059-71270078 Msa0089680:intron 50.0%
ATCACACTGGTGACCTTGGA+TGG - chr1_2:71270380-71270399 Msa0089680:intron 50.0%
GGCACTTATTCAGTTGGTCC+TGG - chr1_2:71270445-71270464 Msa0089680:intron 50.0%
CAGGGATGTGTTGTACGCAT+CGG + chr1_2:71270633-71270652 None:intergenic 50.0%
! GAATGCTTTTCATGCCGCTC+AGG - chr1_2:71270684-71270703 Msa0089680:intron 50.0%
TGCAGAACTCCAGAAAGGGT+CGG + chr1_2:71270731-71270750 None:intergenic 50.0%
ATGGGACAATCCTCCGAAGA+TGG - chr1_2:71270896-71270915 Msa0089680:CDS 50.0%
AAGAGAGGTTCCATCTTCGG+AGG + chr1_2:71270909-71270928 None:intergenic 50.0%
TCCTCAGGCTAAGAAGCTTG+AGG - chr1_2:71271145-71271164 Msa0089680:CDS 50.0%
!!! GGGGTGCTGTATTGTTTTGG+AGG - chr1_2:71271430-71271449 Msa0089680:five_prime_UTR 50.0%
GATGCCTTGAATCAAGTGGG+AGG - chr1_2:71271480-71271499 Msa0089680:five_prime_UTR 50.0%
CTCATCTGTACGATTCGAGC+AGG - chr1_2:71271553-71271572 Msa0089680:five_prime_UTR 50.0%
!! TTCCCGCGATTCGGGCTTTT+GGG - chr1_2:71267700-71267719 Msa0089680:CDS 55.0%
TTCCCAAAAGCCCGAATCGC+GGG + chr1_2:71267705-71267724 None:intergenic 55.0%
GGGGTCACAAATAAGGGGAG+AGG - chr1_2:71268748-71268767 Msa0089680:intron 55.0%
! GGTATTGAAGGAACGGGTGG+AGG - chr1_2:71268796-71268815 Msa0089680:intron 55.0%
CGGGTGGAGGGTTTCAGATA+AGG - chr1_2:71268809-71268828 Msa0089680:intron 55.0%
TGCTTATAGGGGATGGGGCA+GGG - chr1_2:71268846-71268865 Msa0089680:intron 55.0%
GGGTCAGCGTCACGATTCAT+GGG - chr1_2:71269409-71269428 Msa0089680:intron 55.0%
!! AGAACTGTGCAGAGGCGTTG+TGG - chr1_2:71269903-71269922 Msa0089680:intron 55.0%
CACATTGAGCCGACCCTTTC+TGG - chr1_2:71270719-71270738 Msa0089680:intron 55.0%
ACATCACCCCACTGTGAGCA+CGG + chr1_2:71271107-71271126 None:intergenic 55.0%
AGCTTCTTAGCCTGAGGACC+TGG + chr1_2:71271143-71271162 None:intergenic 55.0%
GCCTCAAGCTTCTTAGCCTG+AGG + chr1_2:71271149-71271168 None:intergenic 55.0%
GTGCGGTCCAGTCATCAAGA+AGG + chr1_2:71271184-71271203 None:intergenic 55.0%
!! CTGGCACTGATTCGTCTGTG+CGG + chr1_2:71271201-71271220 None:intergenic 55.0%
GACTGCGCAGCTTCCTACAA+TGG + chr1_2:71271252-71271271 None:intergenic 55.0%
!! GTTCCCGCGATTCGGGCTTT+TGG - chr1_2:71267699-71267718 Msa0089680:CDS 60.0%
GTGCTTATAGGGGATGGGGC+AGG - chr1_2:71268845-71268864 Msa0089680:intron 60.0%
GAACAGGCAAAGGGGTCCAG+GGG + chr1_2:71268883-71268902 None:intergenic 60.0%
GGAACAGGCAAAGGGGTCCA+GGG + chr1_2:71268884-71268903 None:intergenic 60.0%
AGGAACAGGCAAAGGGGTCC+AGG + chr1_2:71268885-71268904 None:intergenic 60.0%
GGGGTCAGCGTCACGATTCA+TGG - chr1_2:71269408-71269427 Msa0089680:intron 60.0%
TGAACGAATGAGCGGCGCAG+TGG + chr1_2:71269853-71269872 None:intergenic 60.0%
ACTGCGCCGCTCATTCGTTC+AGG - chr1_2:71269852-71269871 Msa0089680:intron 60.0%
ATGCCGCTCAGGTTCACCGT+GGG - chr1_2:71270695-71270714 Msa0089680:intron 60.0%
TGACCCACGGTGAACCTGAG+CGG + chr1_2:71270701-71270720 None:intergenic 60.0%
! GGTCGGCTCAATGTGACCCA+CGG + chr1_2:71270714-71270733 None:intergenic 60.0%
CGAGGCTAATAACCCCGTGC+TGG - chr1_2:71270989-71271008 Msa0089680:CDS 60.0%
GGTGGATCCGTGCTCACAGT+GGG - chr1_2:71271097-71271116 Msa0089680:CDS 60.0%
GTGGATCCGTGCTCACAGTG+GGG - chr1_2:71271098-71271117 Msa0089680:CDS 60.0%
CAGGGCTCAATTGCCTCCCC+TGG - chr1_2:71268864-71268883 Msa0089680:intron 65.0%
!! CTGTGCAGAGGCGTTGTGGC+TGG - chr1_2:71269907-71269926 Msa0089680:intron 65.0%
CATGCCGCTCAGGTTCACCG+TGG - chr1_2:71270694-71270713 Msa0089680:intron 65.0%
CTCGGTTGCGACCACCACGT+TGG + chr1_2:71271037-71271056 None:intergenic 65.0%
GTCGCAACCGAGCTGCACCA+GGG - chr1_2:71271045-71271064 Msa0089680:CDS 65.0%
TCGCAACCGAGCTGCACCAG+GGG - chr1_2:71271046-71271065 Msa0089680:CDS 65.0%
ACCATGCCCCTGGTGCAGCT+CGG + chr1_2:71271055-71271074 None:intergenic 65.0%
GGGTGGATCCGTGCTCACAG+TGG - chr1_2:71271096-71271115 Msa0089680:CDS 65.0%
CAGGCAAAGGGGTCCAGGGG+AGG + chr1_2:71268880-71268899 None:intergenic 70.0%
GGTCGCAACCGAGCTGCACC+AGG - chr1_2:71271044-71271063 Msa0089680:CDS 70.0%
ACCGAGCTGCACCAGGGGCA+TGG - chr1_2:71271051-71271070 Msa0089680:CDS 70.0%
! GCACCAGGGGCATGGTGCTC+CGG - chr1_2:71271059-71271078 Msa0089680:CDS 70.0%
! CAGGGGCATGGTGCTCCGGT+CGG - chr1_2:71271063-71271082 Msa0089680:CDS 70.0%
CTCCGGTCGGAGGAGCTGGT+GGG - chr1_2:71271076-71271095 Msa0089680:CDS 70.0%
CACCCACCAGCTCCTCCGAC+CGG + chr1_2:71271081-71271100 None:intergenic 70.0%
! CGACCGGAGCACCATGCCCC+TGG + chr1_2:71271065-71271084 None:intergenic 75.0%
GGGCATGGTGCTCCGGTCGG+AGG - chr1_2:71271066-71271085 Msa0089680:CDS 75.0%
GGTGCTCCGGTCGGAGGAGC+TGG - chr1_2:71271072-71271091 Msa0089680:CDS 75.0%
GCTCCGGTCGGAGGAGCTGG+TGG - chr1_2:71271075-71271094 Msa0089680:CDS 75.0%
CGGTCGGAGGAGCTGGTGGG+TGG - chr1_2:71271079-71271098 Msa0089680:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 71266986 71271667 71266986 ID=Msa0089680;Name=Msa0089680
chr1_2 mRNA 71266986 71271667 71266986 ID=Msa0089680-mRNA-1;Parent=Msa0089680;Name=Msa0089680-mRNA-1;_AED=0.04;_eAED=0.04;_QI=413|1|1|1|1|1|4|444|397
chr1_2 exon 71266986 71267947 71266986 ID=Msa0089680-mRNA-1:exon:24561;Parent=Msa0089680-mRNA-1
chr1_2 exon 71268037 71268152 71268037 ID=Msa0089680-mRNA-1:exon:24560;Parent=Msa0089680-mRNA-1
chr1_2 exon 71268246 71268321 71268246 ID=Msa0089680-mRNA-1:exon:24559;Parent=Msa0089680-mRNA-1
chr1_2 exon 71270771 71271667 71270771 ID=Msa0089680-mRNA-1:exon:24558;Parent=Msa0089680-mRNA-1
chr1_2 five_prime_UTR 71271255 71271667 71271255 ID=Msa0089680-mRNA-1:five_prime_utr;Parent=Msa0089680-mRNA-1
chr1_2 CDS 71270771 71271254 71270771 ID=Msa0089680-mRNA-1:cds;Parent=Msa0089680-mRNA-1
chr1_2 CDS 71268246 71268321 71268246 ID=Msa0089680-mRNA-1:cds;Parent=Msa0089680-mRNA-1
chr1_2 CDS 71268037 71268152 71268037 ID=Msa0089680-mRNA-1:cds;Parent=Msa0089680-mRNA-1
chr1_2 CDS 71267430 71267947 71267430 ID=Msa0089680-mRNA-1:cds;Parent=Msa0089680-mRNA-1
chr1_2 three_prime_UTR 71266986 71267429 71266986 ID=Msa0089680-mRNA-1:three_prime_utr;Parent=Msa0089680-mRNA-1
Gene Sequence

>Msa0089680

ATGGGAGCTGAAAAAAAATGGCTTTTCACGCTATTCAGTGCAGCTGTTTTATCTTTAATGCTTTTGTTAATGTCTTCTTTTTCAACTTTCAGTTCTCAAAAGCCTTTTCCATCACTTGTTCAACATGGTTCTCATTATCCTCCTGCTTTTGCATACTTTATCTCTGGTGGACATGGTGATAAAGACCGGATCTTTCGTTTGTTGTTGGCTGTTTATCATCCGAGGAACCGTTATTTGCTTCATCTTGGTATGGATGCTAGGAATGAAGAGAGACAGGGTTTGGCTGATGCTGTTAGTTCTGTTCCCGCGATTCGGGCTTTTGGGAATGTTGATGTGGTTGGTAAAGCTGATTGGATCACTTATTTGGGTTCTTCCAATGTTGCTATCACGCTACGTGCTGCTGCTATTATGCTTAAATTAGATAGTGGATGGAATTGGTTTATCACTTTGAGTGCTCGTGATTATCCTCTCATTACACAGGATGATCTATCCCATGTTTTCTCCTCCGTGAATAGAGACCTCAATTTCATTGATCACACTGGTGACCTTGGATGGAAAGAGAGTGACAGATTCAAGCCTATTGTAGTTGATCCAGGAACATATTTAGCAAGGAGAAGTCAAATTTTTCAAGCTACAGAGAAGAGAGCAACACCTGATGCATTCAAACTCTTCACTGGTTCACCGTGGGTCACATTGAGCCGACCCTTTCTGGAGTTCTGCATTTTCGGTTGGGATAATTTACCACGAACGCTACTAATGTATTTTACAAATGTAAAGTTATCTCAAGAAGGCTACTTTCACTCAGTCATTTGCAATGCACCCGAATTTAAGAACACAACAGTGAATGGTGACTTACGATACATGATATGGGACAATCCTCCGAAGATGGAACCTCTCTTCCTTAATACATCTGTTTATGATATGATGGCAGAAAGTGGAGCAGCATTTGCAAGACAGTTCGAGGCTAATAACCCCGTGCTGGATATGATTGACAAAAAAATTCTCCAACGTGGTGGTCGCAACCGAGCTGCACCAGGGGCATGGTGCTCCGGTCGGAGGAGCTGGTGGGTGGATCCGTGCTCACAGTGGGGTGATGTCAATATTCTTAAGCCAGGTCCTCAGGCTAAGAAGCTTGAGGCATCTGTTTCTAGCCTTCTTGATGACTGGACCGCACAGACGAATCAGTGCCAGTGA
Protein sequence

>Msa0089680

MGAEKKWLFTLFSAAVLSLMLLLMSSFSTFSSQKPFPSLVQHGSHYPPAFAYFISGGHGDKDRIFRLLLAVYHPRNRYLLHLGMDARNEERQGLADAVSSVPAIRAFGNVDVVGKADWITYLGSSNVAITLRAAAIMLKLDSGWNWFITLSARDYPLITQDDLSHVFSSVNRDLNFIDHTGDLGWKESDRFKPIVVDPGTYLARRSQIFQATEKRATPDAFKLFTGSPWVTLSRPFLEFCIFGWDNLPRTLLMYFTNVKLSQEGYFHSVICNAPEFKNTTVNGDLRYMIWDNPPKMEPLFLNTSVYDMMAESGAAFARQFEANNPVLDMIDKKILQRGGRNRAAPGAWCSGRRSWWVDPCSQWGDVNILKPGPQAKKLEASVSSLLDDWTAQTNQCQ*