Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070250 | XP_013467631.1 | 97.518 | 564 | 14 | 0 | 1 | 564 | 1 | 564 | 0.0 | 1125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070250 | sp|Q9FG23|CK5P3_ARATH | 64.374 | 567 | 181 | 6 | 1 | 564 | 1 | 549 | 0.0 | 715 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070250 | A0A072VJQ0 | 97.518 | 564 | 14 | 0 | 1 | 564 | 1 | 564 | 0.0 | 1125 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012220 | Msa0070250 | 0.808675 | 2.756592e-50 | -8.615850e-47 |
| Msa0031820 | Msa0070250 | 0.808326 | 3.272575e-50 | -8.615850e-47 |
| Msa0070250 | Msa0089680 | 0.803107 | 4.080948e-49 | -8.615850e-47 |
| Msa0070250 | Msa0100800 | 0.813709 | 2.231521e-51 | -8.615850e-47 |
| Msa0070250 | Msa0118600 | 0.802860 | 4.591402e-49 | -8.615850e-47 |
| Msa0070250 | Msa0126770 | 0.827956 | 1.174913e-54 | -8.615850e-47 |
| Msa0070250 | Msa0126840 | 0.802303 | 5.980910e-49 | -8.615850e-47 |
| Msa0070250 | Msa0155330 | 0.800157 | 1.644138e-48 | -8.615850e-47 |
| Msa0070250 | Msa0161260 | 0.886810 | 2.473620e-72 | -8.615850e-47 |
| Msa0070250 | Msa0171850 | 0.855497 | 6.061906e-62 | -8.615850e-47 |
| Msa0070250 | Msa0174000 | 0.815171 | 1.059887e-51 | -8.615850e-47 |
| Msa0070250 | Msa0252240 | 0.817816 | 2.709348e-52 | -8.615850e-47 |
| Msa0070250 | Msa0291520 | 0.802988 | 4.319400e-49 | -8.615850e-47 |
| Msa0070250 | Msa0333160 | 0.806390 | 8.419769e-50 | -8.615850e-47 |
| Msa0070250 | Msa0338320 | 0.819234 | 1.292655e-52 | -8.615850e-47 |
| Msa0070250 | Msa0383130 | 0.800023 | 1.750171e-48 | -8.615850e-47 |
| Msa0070250 | Msa0384880 | 0.812209 | 4.757598e-51 | -8.615850e-47 |
| Msa0070250 | Msa0462880 | 0.811002 | 8.703663e-51 | -8.615850e-47 |
| Msa0070250 | Msa0474700 | 0.836172 | 1.093216e-56 | -8.615850e-47 |
| Msa0070250 | Msa0533960 | -0.806158 | 9.421630e-50 | -8.615850e-47 |
| Msa0070250 | Msa0550570 | 0.807286 | 5.444718e-50 | -8.615850e-47 |
| Msa0070250 | Msa0583500 | 0.804948 | 1.690618e-49 | -8.615850e-47 |
| Msa0070250 | Msa0593700 | 0.800863 | 1.180171e-48 | -8.615850e-47 |
| Msa0070250 | Msa0646130 | 0.833907 | 4.072968e-56 | -8.615850e-47 |
| Msa0070250 | Msa0706390 | 0.802938 | 4.424205e-49 | -8.615850e-47 |
| Msa0070250 | Msa0795660 | 0.800522 | 1.385336e-48 | -8.615850e-47 |
| Msa0070250 | Msa0819540 | 0.807278 | 5.465510e-50 | -8.615850e-47 |
| Msa0070250 | Msa0963020 | 0.818625 | 1.777600e-52 | -8.615850e-47 |
| Msa0070250 | Msa0981430 | 0.833580 | 4.914021e-56 | -8.615850e-47 |
| Msa0070250 | Msa1068390 | 0.816352 | 5.781504e-52 | -8.615850e-47 |
| Msa0070250 | Msa1070050 | 0.806232 | 9.088670e-50 | -8.615850e-47 |
| Msa0070250 | Msa1083880 | 0.832811 | 7.641095e-56 | -8.615850e-47 |
| Msa0070250 | Msa1114040 | 0.807658 | 4.539981e-50 | -8.615850e-47 |
| Msa0070250 | Msa1181170 | -0.813576 | 2.386294e-51 | -8.615850e-47 |
| Msa0070250 | Msa1325930 | 0.809391 | 1.936659e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070250 | MtrunA17_Chr1g0174831 | 97.518 | 564 | 14 | 0 | 1 | 564 | 1 | 564 | 0.0 | 1125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070250 | AT5G06830.1 | 64.374 | 567 | 181 | 6 | 1 | 564 | 1 | 549 | 0.0 | 715 |
Find 130 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCTTCGTTTGATATTAT+TGG | 0.104672 | 1_2:+40300159 | None:intergenic |
| AACATATTTGGTCGTCTTTC+CGG | 0.164681 | 1_2:-40301281 | Msa0070250:CDS |
| GGAAGGCCAGTTAATATAAT+TGG | 0.182964 | 1_2:-40297891 | Msa0070250:CDS |
| CAACTCAATTCAACAACTTC+TGG | 0.187109 | 1_2:+40302876 | None:intergenic |
| AAAATACTGAATAAATTTAT+AGG | 0.210348 | 1_2:-40297759 | Msa0070250:three_prime_UTR |
| TTCTTCTCTGCTCAGTTAAA+TGG | 0.212683 | 1_2:+40302905 | None:intergenic |
| CAGGGTCTAGGGTTTGAAAA+AGG | 0.219060 | 1_2:+40302497 | None:intergenic |
| GATGCAAAGTGATATTTCTT+TGG | 0.257767 | 1_2:-40299575 | Msa0070250:CDS |
| ATCTCCCCAATTATATTAAC+TGG | 0.273734 | 1_2:+40297885 | None:intergenic |
| TAATGTCAGATTAGAACTTT+TGG | 0.282447 | 1_2:-40300777 | Msa0070250:CDS |
| TTGATCTTGCAAGAAGATAT+TGG | 0.295724 | 1_2:-40297565 | Msa0070250:three_prime_UTR |
| ACTTCCACATTGCTTTCTTC+AGG | 0.303865 | 1_2:+40300354 | None:intergenic |
| GACTCTGAGGTTATTAATAT+TGG | 0.309283 | 1_2:-40300408 | Msa0070250:CDS |
| CAATTTCATTGCTGACAAAT+AGG | 0.323606 | 1_2:-40299552 | Msa0070250:CDS |
| AAAGTAGAACTCACTTGTTT+TGG | 0.336298 | 1_2:+40299237 | None:intergenic |
| GATTATTTGGTTAGGGTGCT+TGG | 0.339462 | 1_2:-40301186 | Msa0070250:intron |
| TTCAGGGATTGGTTATTTAG+AGG | 0.347258 | 1_2:-40301351 | Msa0070250:intron |
| CAGTTAAATGGTAATAATAT+TGG | 0.348917 | 1_2:+40302917 | None:intergenic |
| TGGAAAGTTCACAAATTGAT+TGG | 0.357253 | 1_2:-40300299 | Msa0070250:CDS |
| GAAGGCCAGTTAATATAATT+GGG | 0.364813 | 1_2:-40297890 | Msa0070250:CDS |
| AAAACAAACCTTCAGGGTCT+AGG | 0.387153 | 1_2:+40302485 | None:intergenic |
| AGACAGACTAGTAAACTCTT+TGG | 0.390215 | 1_2:-40299355 | Msa0070250:CDS |
| ATGTGAAAATAAGAACAAAA+AGG | 0.395006 | 1_2:+40297720 | None:intergenic |
| CTGGTAGTGATGAAGCCTTT+TGG | 0.396592 | 1_2:-40297800 | Msa0070250:three_prime_UTR |
| TAATATCAGAGCAAGAATAA+TGG | 0.397936 | 1_2:+40297540 | None:intergenic |
| GAGGCATTAATGATTTCATA+TGG | 0.400164 | 1_2:+40300228 | None:intergenic |
| TGCACCTGTTTCCTCTGATA+AGG | 0.401811 | 1_2:+40300983 | None:intergenic |
| ACACTTTCATCCATGTTTGA+TGG | 0.404738 | 1_2:-40297912 | Msa0070250:CDS |
| ATTATTTGGTTAGGGTGCTT+GGG | 0.406011 | 1_2:-40301185 | Msa0070250:intron |
| TCTGTCTAATTCAAAAGAAC+AGG | 0.407323 | 1_2:+40297695 | None:intergenic |
| TTGTCAGGAGCTTGGCCTAC+AGG | 0.414431 | 1_2:-40300870 | Msa0070250:intron |
| TTGCTGCTCCTGACATTGAC+TGG | 0.415578 | 1_2:-40300332 | Msa0070250:CDS |
| ACGGAAAGTAGGAACATATT+TGG | 0.415933 | 1_2:-40301293 | Msa0070250:CDS |
| AAATACTGAATAAATTTATA+GGG | 0.417175 | 1_2:-40297758 | Msa0070250:three_prime_UTR |
| ATGAAGCTATTTGTGGTACT+TGG | 0.417992 | 1_2:-40297610 | Msa0070250:three_prime_UTR |
| TAAATATGTTGAAGCTTGTC+AGG | 0.419372 | 1_2:-40300885 | Msa0070250:CDS |
| AAGCACGTTTAGCAGGATCT+TGG | 0.431282 | 1_2:-40300735 | Msa0070250:CDS |
| TCACAAATTGATTGGGACAT+TGG | 0.431406 | 1_2:-40300291 | Msa0070250:CDS |
| ATATGGACCCAAGCCATTAC+CGG | 0.432848 | 1_2:+40300245 | None:intergenic |
| GTCAACTGAGATAAGGCATC+TGG | 0.433495 | 1_2:+40300027 | None:intergenic |
| GGAAAGTTCACAAATTGATT+GGG | 0.448608 | 1_2:-40300298 | Msa0070250:CDS |
| GTTATAAATGAAGCTATTTG+TGG | 0.453076 | 1_2:-40297617 | Msa0070250:three_prime_UTR |
| CACTTCCAAGCACGTTTAGC+AGG | 0.464192 | 1_2:-40300742 | Msa0070250:CDS |
| GAGGATACCGGTAATGGCTT+GGG | 0.464929 | 1_2:-40300252 | Msa0070250:CDS |
| ACTCTGTTGACCAGTGGTCT+TGG | 0.470858 | 1_2:-40297858 | Msa0070250:CDS |
| GGAGGATACCGGTAATGGCT+TGG | 0.474836 | 1_2:-40300253 | Msa0070250:CDS |
| GAAAGACGGGTTGAAGGACT+TGG | 0.474948 | 1_2:-40299304 | Msa0070250:CDS |
| TGAGTATCTCACCGCAGAAC+CGG | 0.475633 | 1_2:+40301262 | None:intergenic |
| AAACAAACCTTCAGGGTCTA+GGG | 0.476235 | 1_2:+40302486 | None:intergenic |
| TTGAAGAATGGTTGGTCGAT+CGG | 0.484184 | 1_2:-40302612 | Msa0070250:intron |
| GAAATATCCCAGTCAATGTC+AGG | 0.486100 | 1_2:+40300324 | None:intergenic |
| AAGTCCTTATCAGAGGAAAC+AGG | 0.490424 | 1_2:-40300987 | Msa0070250:CDS |
| GCTCGCATGCAGATATATGC+TGG | 0.491652 | 1_2:-40300134 | Msa0070250:CDS |
| AAGATCCTGCTAAACGTGCT+TGG | 0.492514 | 1_2:+40300737 | None:intergenic |
| TTATGATTCTCAACTCCAAA+AGG | 0.493920 | 1_2:-40299513 | Msa0070250:intron |
| CAGAGATGCTCACACTGAAA+AGG | 0.498117 | 1_2:-40300657 | Msa0070250:CDS |
| GCAGAAGATTCAACAGCAGC+TGG | 0.500986 | 1_2:-40300963 | Msa0070250:CDS |
| GTTGAAGCTTGTCAGGAGCT+TGG | 0.502250 | 1_2:-40300878 | Msa0070250:CDS |
| TGTACTCTGTGTCTAAAAGC+TGG | 0.509361 | 1_2:+40299983 | None:intergenic |
| AAAAGGGGATCAGAATCCTT+AGG | 0.511257 | 1_2:+40302514 | None:intergenic |
| CAGACTAGTAAACTCTTTGG+AGG | 0.513990 | 1_2:-40299352 | Msa0070250:CDS |
| TGTTATCTTTGAAGAATGGT+TGG | 0.516651 | 1_2:-40302620 | Msa0070250:intron |
| TTAAATCATTCTTAAATCAA+CGG | 0.523895 | 1_2:-40299699 | Msa0070250:CDS |
| TGTAGTCATTATCCACCAAA+AGG | 0.525809 | 1_2:+40297785 | None:intergenic |
| CAGTGTTCATTCAAGTAACA+AGG | 0.526568 | 1_2:-40300385 | Msa0070250:CDS |
| GGAAAAGAGTACCTTCTGAT+TGG | 0.530458 | 1_2:-40302591 | Msa0070250:CDS |
| GCATACTGCTGTAGTACAAA+GGG | 0.532926 | 1_2:+40299616 | None:intergenic |
| TCTTCTTGCAAGATCAATGA+AGG | 0.533636 | 1_2:+40297571 | None:intergenic |
| CAAGTTGAAAGACGGGTTGA+AGG | 0.533639 | 1_2:-40299310 | Msa0070250:CDS |
| ATTGTATAGTCTTGAGCCAA+AGG | 0.535332 | 1_2:+40297658 | None:intergenic |
| CATTGGAACTGTAGAAGAAA+CGG | 0.538597 | 1_2:-40300274 | Msa0070250:CDS |
| GATTCTCGACGATCTATATG+AGG | 0.538961 | 1_2:-40299953 | Msa0070250:intron |
| GAATGCATCAAATGCAGTGC+TGG | 0.542634 | 1_2:-40300067 | Msa0070250:CDS |
| GAAACGGAGGATACCGGTAA+TGG | 0.543586 | 1_2:-40300258 | Msa0070250:CDS |
| TGAAGTCTACTACGGAAAGT+AGG | 0.544788 | 1_2:-40301304 | Msa0070250:CDS |
| ATGAAGTCAAGTTGAAAGAC+GGG | 0.545553 | 1_2:-40299317 | Msa0070250:CDS |
| TTTCATCCATGTTTGATGGA+AGG | 0.547085 | 1_2:-40297908 | Msa0070250:CDS |
| TCAACAGCAACATTTAAAGA+TGG | 0.547432 | 1_2:+40300429 | None:intergenic |
| GCATTGCGAATGAAGATCAC+AGG | 0.547878 | 1_2:+40302781 | None:intergenic |
| ATAATGATTGCAGAGATCTT+CGG | 0.548460 | 1_2:-40300493 | Msa0070250:intron |
| TTAAATGGTAATAATATTGG+AGG | 0.550279 | 1_2:+40302920 | None:intergenic |
| AGTTGATGAAGAAGTCTGAA+TGG | 0.553738 | 1_2:+40300200 | None:intergenic |
| TGCTGACAAATAGGAAGACA+AGG | 0.555502 | 1_2:-40299543 | Msa0070250:CDS |
| GGAAGGTTGCGAATATCGTC+GGG | 0.555634 | 1_2:+40302753 | None:intergenic |
| GTCGCTACAAAATCAAGTAC+AGG | 0.556442 | 1_2:-40299647 | Msa0070250:CDS |
| CTCGCATGCAGATATATGCT+GGG | 0.557077 | 1_2:-40300133 | Msa0070250:CDS |
| TGGAAGGTTGCGAATATCGT+CGG | 0.557579 | 1_2:+40302752 | None:intergenic |
| TGACAGAAAACAAGGAAGGA+AGG | 0.563342 | 1_2:-40300008 | Msa0070250:CDS |
| AGAATTCGTTATCTTCATTG+TGG | 0.565216 | 1_2:-40299260 | Msa0070250:CDS |
| GATTGAAGAGAAACTTCCTC+TGG | 0.567252 | 1_2:-40297819 | Msa0070250:three_prime_UTR |
| AAACAGTGACAACATTTCAC+AGG | 0.572703 | 1_2:-40300705 | Msa0070250:CDS |
| TGGTCGTCTTTCCGGTTCTG+CGG | 0.575108 | 1_2:-40301273 | Msa0070250:intron |
| GGCATACTGCTGTAGTACAA+AGG | 0.577594 | 1_2:+40299615 | None:intergenic |
| CATTCTCTTGAAGTCTACTA+CGG | 0.579658 | 1_2:-40301312 | Msa0070250:CDS |
| CTGAGATAAGGCATCTGGAA+GGG | 0.579886 | 1_2:+40300032 | None:intergenic |
| GTAGAAGAAACGGAGGATAC+CGG | 0.580555 | 1_2:-40300264 | Msa0070250:CDS |
| CATCGTTTCTATAGTATCAG+CGG | 0.584422 | 1_2:+40299594 | None:intergenic |
| AAATGTTGCTGTTGACTCTG+AGG | 0.584835 | 1_2:-40300421 | Msa0070250:CDS |
| CATTGACTGGGATATTTCAG+TGG | 0.585460 | 1_2:-40300319 | Msa0070250:CDS |
| GCTGGCAGAACTTGATCGCA+AGG | 0.586969 | 1_2:-40300945 | Msa0070250:CDS |
| GGGGATCAGAATCCTTAGGA+AGG | 0.587029 | 1_2:+40302518 | None:intergenic |
| TATTATGAAGTCCTTATCAG+AGG | 0.592122 | 1_2:-40300994 | Msa0070250:intron |
| TCATCATGCTCCAAGACCAC+TGG | 0.593689 | 1_2:+40297848 | None:intergenic |
| ATCTCAGTTGACAGAAAACA+AGG | 0.594233 | 1_2:-40300016 | Msa0070250:CDS |
| CATGAAGTCAAGTTGAAAGA+CGG | 0.596676 | 1_2:-40299318 | Msa0070250:CDS |
| TTTCAAACCCTAGACCCTGA+AGG | 0.603613 | 1_2:-40302493 | Msa0070250:intron |
| ACAGCAACATTTAAAGATGG+AGG | 0.608554 | 1_2:+40300432 | None:intergenic |
| GGACTTGGCTACTAAGCGCA+TGG | 0.609522 | 1_2:-40299289 | Msa0070250:CDS |
| TCTTCATCAACTGAGGATGT+CGG | 0.609968 | 1_2:-40300189 | Msa0070250:CDS |
| AAGCTGTACTGCAAAACTTG+AGG | 0.612074 | 1_2:-40300470 | Msa0070250:CDS |
| TCAGACTTCTTCATCAACTG+AGG | 0.616971 | 1_2:-40300196 | Msa0070250:CDS |
| AACTGGCCTTCCATCAAACA+TGG | 0.622596 | 1_2:+40297902 | None:intergenic |
| TGCTGCTCCTGACATTGACT+GGG | 0.628895 | 1_2:-40300331 | Msa0070250:CDS |
| ACTGAGATAAGGCATCTGGA+AGG | 0.636948 | 1_2:+40300031 | None:intergenic |
| AATTAAAGCTCAAATTGCAA+AGG | 0.639084 | 1_2:-40302551 | Msa0070250:CDS |
| CAGTTGACAGAAAACAAGGA+AGG | 0.644254 | 1_2:-40300012 | Msa0070250:CDS |
| GGGATCAGAATCCTTAGGAA+GGG | 0.647166 | 1_2:+40302519 | None:intergenic |
| AGAAGTCTGAATGGCCTCAG+AGG | 0.648406 | 1_2:+40300209 | None:intergenic |
| ATCAACACTCTGTTGACCAG+TGG | 0.655638 | 1_2:-40297864 | Msa0070250:CDS |
| TGAAATCATTAATGCCTCTG+AGG | 0.656287 | 1_2:-40300223 | Msa0070250:CDS |
| AAGGCCAGTTAATATAATTG+GGG | 0.665384 | 1_2:-40297889 | Msa0070250:CDS |
| AAAGGCTTCATCACTACCAG+AGG | 0.673398 | 1_2:+40297803 | None:intergenic |
| GCTGACAAATAGGAAGACAA+GGG | 0.689145 | 1_2:-40299542 | Msa0070250:CDS |
| TAGCTTCATTTATAACACGT+CGG | 0.695572 | 1_2:+40297624 | None:intergenic |
| GGCAGAACTTGATCGCAAGG+AGG | 0.696268 | 1_2:-40300942 | Msa0070250:CDS |
| AAATCCTGAAGAAAGCAATG+TGG | 0.698771 | 1_2:-40300358 | Msa0070250:CDS |
| TAATAAGTGCAGCCTCACCA+AGG | 0.702211 | 1_2:+40301125 | None:intergenic |
| TGGAACTGTAGAAGAAACGG+AGG | 0.715106 | 1_2:-40300271 | Msa0070250:CDS |
| GCTACAAAATCAAGTACAGG+CGG | 0.724221 | 1_2:-40299644 | Msa0070250:CDS |
| GTTAGCTGAATTGAAGAACG+AGG | 0.745851 | 1_2:-40299677 | Msa0070250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATTAATTTTCTTAAAAAA+TGG | - | chr1_2:40302034-40302053 | Msa0070250:intron | 10.0% |
| !! | AAAATACTGAATAAATTTAT+AGG | - | chr1_2:40302728-40302747 | Msa0070250:CDS | 10.0% |
| !! | AAATACTGAATAAATTTATA+GGG | - | chr1_2:40302729-40302748 | Msa0070250:CDS | 10.0% |
| !! | ATTGAAATTGAAATTGAAAA+GGG | + | chr1_2:40297810-40297829 | None:intergenic | 15.0% |
| !! | AATTGAAATTGAAATTGAAA+AGG | + | chr1_2:40297811-40297830 | None:intergenic | 15.0% |
| !!! | AATTTCAATTTCTTCAATTT+TGG | - | chr1_2:40297827-40297846 | Msa0070250:three_prime_UTR | 15.0% |
| !! | TTGATACACAATAATTAATT+TGG | - | chr1_2:40298170-40298189 | Msa0070250:intron | 15.0% |
| !! | TTGATTATGTAAAATTGATT+AGG | - | chr1_2:40298236-40298255 | Msa0070250:intron | 15.0% |
| !!! | GAATTAATTTTTAACATGTA+TGG | + | chr1_2:40298859-40298878 | None:intergenic | 15.0% |
| !! | TATTTAATTATGTGTATGTT+TGG | + | chr1_2:40298922-40298941 | None:intergenic | 15.0% |
| !!! | TATTGATTGTAAGAAATTTT+TGG | - | chr1_2:40299059-40299078 | Msa0070250:intron | 15.0% |
| !! | CATGTTTGAATAAATTAATT+AGG | - | chr1_2:40299965-40299984 | Msa0070250:CDS | 15.0% |
| !! | TTGAATAAATTAATTAGGAT+TGG | - | chr1_2:40299970-40299989 | Msa0070250:CDS | 15.0% |
| !!! | ACAAAAATTAAGATTTTGTA+TGG | + | chr1_2:40300746-40300765 | None:intergenic | 15.0% |
| !!! | ACAAAATCTTAATTTTTGTT+TGG | - | chr1_2:40300747-40300766 | Msa0070250:CDS | 15.0% |
| !! | TTAAATCATTCTTAAATCAA+CGG | - | chr1_2:40300788-40300807 | Msa0070250:intron | 15.0% |
| !! | ATATATATATTCTGTGTTAA+TGG | - | chr1_2:40301078-40301097 | Msa0070250:intron | 15.0% |
| !! | TTTAAAAATAATGAACTTAG+TGG | + | chr1_2:40301664-40301683 | None:intergenic | 15.0% |
| !! | TTGTTGAAAAAATTATGATA+TGG | - | chr1_2:40302189-40302208 | Msa0070250:intron | 15.0% |
| !! | AAAATTGAAAATAAATCACA+TGG | + | chr1_2:40302233-40302252 | None:intergenic | 15.0% |
| !! | ATAAGAGAAATATAGATAAA+GGG | + | chr1_2:40302353-40302372 | None:intergenic | 15.0% |
| !! | AATAAGAGAAATATAGATAA+AGG | + | chr1_2:40302354-40302373 | None:intergenic | 15.0% |
| !! | TTAAATGGTAATAATATTGG+AGG | + | chr1_2:40297570-40297589 | None:intergenic | 20.0% |
| !! | CAGTTAAATGGTAATAATAT+TGG | + | chr1_2:40297573-40297592 | None:intergenic | 20.0% |
| !!! | ATTTTGTTATCTTTGAAGAA+TGG | - | chr1_2:40297863-40297882 | Msa0070250:CDS | 20.0% |
| !! | GTTATGAAACAAAATGTATT+TGG | - | chr1_2:40298054-40298073 | Msa0070250:intron | 20.0% |
| !!! | TAATTAATTTGGTGTATGTT+TGG | - | chr1_2:40298181-40298200 | Msa0070250:intron | 20.0% |
| !! | AATTTATTCTACTTAAAGCT+AGG | + | chr1_2:40298374-40298393 | None:intergenic | 20.0% |
| !!! | AATTTTGGCTCATTTTAAAA+TGG | - | chr1_2:40298463-40298482 | Msa0070250:intron | 20.0% |
| !!! | CTTTTTAGCATAATTGTTTT+TGG | + | chr1_2:40298833-40298852 | None:intergenic | 20.0% |
| !! | GTGAGAAACTAAAATAAAAA+TGG | + | chr1_2:40299458-40299477 | None:intergenic | 20.0% |
| !! | TTTGATTATATTATTCTGCA+GGG | - | chr1_2:40299684-40299703 | Msa0070250:CDS | 20.0% |
| !! | AATTCTTCGTTTGATATTAT+TGG | + | chr1_2:40300331-40300350 | None:intergenic | 20.0% |
| !! | AAAAAAAAACAAAGAATGGA+AGG | + | chr1_2:40301376-40301395 | None:intergenic | 20.0% |
| !! | AAGGAAAAAAAAACAAAGAA+TGG | + | chr1_2:40301380-40301399 | None:intergenic | 20.0% |
| !!! | AAAATTAGTTTGAACTAGTA+AGG | - | chr1_2:40301593-40301612 | Msa0070250:intron | 20.0% |
| !! | TAAGAGAAATATAGATAAAG+GGG | + | chr1_2:40302352-40302371 | None:intergenic | 20.0% |
| !! | AAAAATAAAAACCAGTGAAA+GGG | + | chr1_2:40302471-40302490 | None:intergenic | 20.0% |
| !! | TAAAAATAAAAACCAGTGAA+AGG | + | chr1_2:40302472-40302491 | None:intergenic | 20.0% |
| !! | ATGTGAAAATAAGAACAAAA+AGG | + | chr1_2:40302770-40302789 | None:intergenic | 20.0% |
| !!! | GATGTTTTGAAACAGTTTTA+AGG | + | chr1_2:40297687-40297706 | None:intergenic | 25.0% |
| ! | ATTGAAATTGAAAAGGGAAA+TGG | + | chr1_2:40297804-40297823 | None:intergenic | 25.0% |
| ! | AATTAAAGCTCAAATTGCAA+AGG | - | chr1_2:40297936-40297955 | Msa0070250:CDS | 25.0% |
| ! | CATAAAAAAACAAACCTTCA+GGG | + | chr1_2:40298011-40298030 | None:intergenic | 25.0% |
| ! | ACATAAAAAAACAAACCTTC+AGG | + | chr1_2:40298012-40298031 | None:intergenic | 25.0% |
| ! | TGAGTTAAACTTGAAATTTG+TGG | - | chr1_2:40298314-40298333 | Msa0070250:intron | 25.0% |
| ! | GAGTTAAACTTGAAATTTGT+GGG | - | chr1_2:40298315-40298334 | Msa0070250:intron | 25.0% |
| !! | GCTTTAAGTAGAATAAATTC+TGG | - | chr1_2:40298375-40298394 | Msa0070250:intron | 25.0% |
| ! | TTAAGTAGAATAAATTCTGG+AGG | - | chr1_2:40298378-40298397 | Msa0070250:intron | 25.0% |
| !! | ATGATTAAAAGTGAGTTGAA+TGG | - | chr1_2:40298685-40298704 | Msa0070250:intron | 25.0% |
| !!! | TGATTGTAAGAAATTTTTGG+TGG | - | chr1_2:40299062-40299081 | Msa0070250:intron | 25.0% |
| !!! | GATTGTAAGAAATTTTTGGT+GGG | - | chr1_2:40299063-40299082 | Msa0070250:intron | 25.0% |
| !!! | CATTGCTTTATCTTTTTTCA+GGG | - | chr1_2:40299120-40299139 | Msa0070250:intron | 25.0% |
| !!! | ATACTTTTTCTTAGTGATTC+TGG | - | chr1_2:40299247-40299266 | Msa0070250:intron | 25.0% |
| !!! | AATTGTGAAATCTTTTGAGA+AGG | - | chr1_2:40299329-40299348 | Msa0070250:CDS | 25.0% |
| ! | GTTTGATTATATTATTCTGC+AGG | - | chr1_2:40299683-40299702 | Msa0070250:CDS | 25.0% |
| !! | TAATGTCAGATTAGAACTTT+TGG | - | chr1_2:40299710-40299729 | Msa0070250:intron | 25.0% |
| ! | TCTTGAATTATCTGTATAGA+AGG | - | chr1_2:40299926-40299945 | Msa0070250:intron | 25.0% |
| ! | AATTATCTGTATAGAAGGAT+GGG | - | chr1_2:40299931-40299950 | Msa0070250:intron | 25.0% |
| ! | CATATAATTTCCTATATCCT+TGG | - | chr1_2:40300607-40300626 | Msa0070250:intron | 25.0% |
| !! | AAATATCCAGTAATACCTTT+TGG | + | chr1_2:40300992-40301011 | None:intergenic | 25.0% |
| !!! | ATCTAGTAATAGTTTTAGAG+AGG | + | chr1_2:40301433-40301452 | None:intergenic | 25.0% |
| !!! | GTTCAAACTAATTTTGAGAT+TGG | + | chr1_2:40301588-40301607 | None:intergenic | 25.0% |
| ! | AAGAGAAATATAGATAAAGG+GGG | + | chr1_2:40302351-40302370 | None:intergenic | 25.0% |
| ! | GTTATAAATGAAGCTATTTG+TGG | - | chr1_2:40302870-40302889 | Msa0070250:five_prime_UTR | 25.0% |
| AAAAAGTGATGTCAATTGGA+AGG | + | chr1_2:40297754-40297773 | None:intergenic | 30.0% | |
| ! | TGTTATCTTTGAAGAATGGT+TGG | - | chr1_2:40297867-40297886 | Msa0070250:CDS | 30.0% |
| !! | TATTTGGATTAGTGTGTGTT+TGG | - | chr1_2:40298070-40298089 | Msa0070250:intron | 30.0% |
| !!! | ATTTGGTGTATGTTTGGTTT+TGG | - | chr1_2:40298187-40298206 | Msa0070250:intron | 30.0% |
| !!! | TTTGGTGTATGTTTGGTTTT+GGG | - | chr1_2:40298188-40298207 | Msa0070250:intron | 30.0% |
| TAGGACTAAAAGTTAGTTGA+AGG | - | chr1_2:40298255-40298274 | Msa0070250:intron | 30.0% | |
| AGGACTAAAAGTTAGTTGAA+GGG | - | chr1_2:40298256-40298275 | Msa0070250:intron | 30.0% | |
| AGAACTCATTCAAACATGTT+TGG | + | chr1_2:40298429-40298448 | None:intergenic | 30.0% | |
| AAATGAGCCAAAATTCATTC+TGG | + | chr1_2:40298458-40298477 | None:intergenic | 30.0% | |
| ! | AACTTGAAGCTATGATTTGT+AGG | + | chr1_2:40298794-40298813 | None:intergenic | 30.0% |
| !! | TGTATGTTTGGTTTCACTTT+TGG | + | chr1_2:40298910-40298929 | None:intergenic | 30.0% |
| !!! | GCATTGCTTTATCTTTTTTC+AGG | - | chr1_2:40299119-40299138 | Msa0070250:intron | 30.0% |
| !!! | CTTTATCTTTTTTCAGGGAT+TGG | - | chr1_2:40299125-40299144 | Msa0070250:intron | 30.0% |
| AATAATCTTCACGATGACAA+CGG | + | chr1_2:40299288-40299307 | None:intergenic | 30.0% | |
| TTGTCATCGTGAAGATTATT+TGG | - | chr1_2:40299288-40299307 | Msa0070250:CDS | 30.0% | |
| ATCGTGAAGATTATTTGGTT+AGG | - | chr1_2:40299293-40299312 | Msa0070250:CDS | 30.0% | |
| TCGTGAAGATTATTTGGTTA+GGG | - | chr1_2:40299294-40299313 | Msa0070250:CDS | 30.0% | |
| TATTATGAAGTCCTTATCAG+AGG | - | chr1_2:40299493-40299512 | Msa0070250:intron | 30.0% | |
| TAAATATGTTGAAGCTTGTC+AGG | - | chr1_2:40299602-40299621 | Msa0070250:CDS | 30.0% | |
| GAATTATCTGTATAGAAGGA+TGG | - | chr1_2:40299930-40299949 | Msa0070250:intron | 30.0% | |
| ATAATGATTGCAGAGATCTT+CGG | - | chr1_2:40299994-40300013 | Msa0070250:CDS | 30.0% | |
| TCAACAGCAACATTTAAAGA+TGG | + | chr1_2:40300061-40300080 | None:intergenic | 30.0% | |
| !! | GACTCTGAGGTTATTAATAT+TGG | - | chr1_2:40300079-40300098 | Msa0070250:CDS | 30.0% |
| TGGAAAGTTCACAAATTGAT+TGG | - | chr1_2:40300188-40300207 | Msa0070250:CDS | 30.0% | |
| GGAAAGTTCACAAATTGATT+GGG | - | chr1_2:40300189-40300208 | Msa0070250:CDS | 30.0% | |
| ! | GAGGCATTAATGATTTCATA+TGG | + | chr1_2:40300262-40300281 | None:intergenic | 30.0% |
| CTTACTCATATGTTTATCGA+GGG | + | chr1_2:40300706-40300725 | None:intergenic | 30.0% | |
| TCTTACTCATATGTTTATCG+AGG | + | chr1_2:40300707-40300726 | None:intergenic | 30.0% | |
| GATGCAAAGTGATATTTCTT+TGG | - | chr1_2:40300912-40300931 | Msa0070250:CDS | 30.0% | |
| CAATTTCATTGCTGACAAAT+AGG | - | chr1_2:40300935-40300954 | Msa0070250:CDS | 30.0% | |
| TTATGATTCTCAACTCCAAA+AGG | - | chr1_2:40300974-40300993 | Msa0070250:CDS | 30.0% | |
| TATATAAAATCTGACAGAGC+TGG | + | chr1_2:40301063-40301082 | None:intergenic | 30.0% | |
| ! | CTGTCTAGAAATCTGAAATT+TGG | + | chr1_2:40301118-40301137 | None:intergenic | 30.0% |
| AGAATTCGTTATCTTCATTG+TGG | - | chr1_2:40301227-40301246 | Msa0070250:intron | 30.0% | |
| ! | AAAGTAGAACTCACTTGTTT+TGG | + | chr1_2:40301253-40301272 | None:intergenic | 30.0% |
| !!! | AATAGTTTTAGAGAGGTGTA+GGG | + | chr1_2:40301426-40301445 | None:intergenic | 30.0% |
| !!! | TAATAGTTTTAGAGAGGTGT+AGG | + | chr1_2:40301427-40301446 | None:intergenic | 30.0% |
| GTATGGTTTATAAAACTCGA+AGG | + | chr1_2:40301498-40301517 | None:intergenic | 30.0% | |
| !!! | AACTAATTTTGAGATTGGCT+GGG | + | chr1_2:40301583-40301602 | None:intergenic | 30.0% |
| !!! | AAACTAATTTTGAGATTGGC+TGG | + | chr1_2:40301584-40301603 | None:intergenic | 30.0% |
| TCACAGATATAGCAATAACA+GGG | - | chr1_2:40302096-40302115 | Msa0070250:intron | 30.0% | |
| ! | TTAAAAGATTAGTTGCCAAC+CGG | + | chr1_2:40302429-40302448 | None:intergenic | 30.0% |
| GAAGGCCAGTTAATATAATT+GGG | - | chr1_2:40302597-40302616 | Msa0070250:CDS | 30.0% | |
| AAGGCCAGTTAATATAATTG+GGG | - | chr1_2:40302598-40302617 | Msa0070250:CDS | 30.0% | |
| ATCTCCCCAATTATATTAAC+TGG | + | chr1_2:40302605-40302624 | None:intergenic | 30.0% | |
| TCTGTCTAATTCAAAAGAAC+AGG | + | chr1_2:40302795-40302814 | None:intergenic | 30.0% | |
| !!! | GAACTTGTACTTTTTTCCTT+TGG | - | chr1_2:40302813-40302832 | Msa0070250:five_prime_UTR | 30.0% |
| TAGCTTCATTTATAACACGT+CGG | + | chr1_2:40302866-40302885 | None:intergenic | 30.0% | |
| TTGATCTTGCAAGAAGATAT+TGG | - | chr1_2:40302922-40302941 | Msa0070250:five_prime_UTR | 30.0% | |
| TTCTTCTCTGCTCAGTTAAA+TGG | + | chr1_2:40297585-40297604 | None:intergenic | 35.0% | |
| CAACTCAATTCAACAACTTC+TGG | + | chr1_2:40297614-40297633 | None:intergenic | 35.0% | |
| !!! | GAAACAGTTTTAAGGAACGA+AGG | + | chr1_2:40297679-40297698 | None:intergenic | 35.0% |
| CGAGAAAAAGTGATGTCAAT+TGG | + | chr1_2:40297758-40297777 | None:intergenic | 35.0% | |
| !!! | TTGGTGTATGTTTGGTTTTG+GGG | - | chr1_2:40298189-40298208 | Msa0070250:intron | 35.0% |
| ! | AAGGGAAAGTGATTTGTGTT+TGG | - | chr1_2:40298274-40298293 | Msa0070250:intron | 35.0% |
| ! | TACACGTCCAGAATGAATTT+TGG | - | chr1_2:40298448-40298467 | Msa0070250:intron | 35.0% |
| ! | AAAGTGAGTTGAATGGAAAG+TGG | - | chr1_2:40298692-40298711 | Msa0070250:intron | 35.0% |
| ! | AAGTGAGTTGAATGGAAAGT+GGG | - | chr1_2:40298693-40298712 | Msa0070250:intron | 35.0% |
| AATGGAAAGTGGGATATGTT+TGG | - | chr1_2:40298703-40298722 | Msa0070250:intron | 35.0% | |
| !! | TTTGGTTTCACTTTTGGAGA+TGG | + | chr1_2:40298904-40298923 | None:intergenic | 35.0% |
| GAAAACAACTCAACACTCAA+CGG | + | chr1_2:40299020-40299039 | None:intergenic | 35.0% | |
| ! | TCAACTTGCTTGCATAAGAT+GGG | - | chr1_2:40299086-40299105 | Msa0070250:intron | 35.0% |
| GCATAAGATGGGATTAAATG+TGG | - | chr1_2:40299097-40299116 | Msa0070250:intron | 35.0% | |
| !! | TTCAGGGATTGGTTATTTAG+AGG | - | chr1_2:40299136-40299155 | Msa0070250:intron | 35.0% |
| CATTCTCTTGAAGTCTACTA+CGG | - | chr1_2:40299175-40299194 | Msa0070250:intron | 35.0% | |
| ACGGAAAGTAGGAACATATT+TGG | - | chr1_2:40299194-40299213 | Msa0070250:intron | 35.0% | |
| AACATATTTGGTCGTCTTTC+CGG | - | chr1_2:40299206-40299225 | Msa0070250:intron | 35.0% | |
| ! | ATTATTTGGTTAGGGTGCTT+GGG | - | chr1_2:40299302-40299321 | Msa0070250:CDS | 35.0% |
| TGTAAGCAATGTGATCTTCT+TGG | - | chr1_2:40299409-40299428 | Msa0070250:intron | 35.0% | |
| AAACAGTGACAACATTTCAC+AGG | - | chr1_2:40299782-40299801 | Msa0070250:intron | 35.0% | |
| AGATAATTCAAGAGAGTTGC+AGG | + | chr1_2:40299919-40299938 | None:intergenic | 35.0% | |
| ACAGCAACATTTAAAGATGG+AGG | + | chr1_2:40300058-40300077 | None:intergenic | 35.0% | |
| CAGTGTTCATTCAAGTAACA+AGG | - | chr1_2:40300102-40300121 | Msa0070250:CDS | 35.0% | |
| AAATCCTGAAGAAAGCAATG+TGG | - | chr1_2:40300129-40300148 | Msa0070250:CDS | 35.0% | |
| TCACAAATTGATTGGGACAT+TGG | - | chr1_2:40300196-40300215 | Msa0070250:CDS | 35.0% | |
| CATTGGAACTGTAGAAGAAA+CGG | - | chr1_2:40300213-40300232 | Msa0070250:CDS | 35.0% | |
| TGAAATCATTAATGCCTCTG+AGG | - | chr1_2:40300264-40300283 | Msa0070250:CDS | 35.0% | |
| !! | AGTTGATGAAGAAGTCTGAA+TGG | + | chr1_2:40300290-40300309 | None:intergenic | 35.0% |
| ! | GTTTTCTGTCAACTGAGATA+AGG | + | chr1_2:40300470-40300489 | None:intergenic | 35.0% |
| ATCTCAGTTGACAGAAAACA+AGG | - | chr1_2:40300471-40300490 | Msa0070250:CDS | 35.0% | |
| AATTTCCTATATCCTTGGAC+AGG | - | chr1_2:40300612-40300631 | Msa0070250:intron | 35.0% | |
| TTGTATGGACAAAGAAGAGT+GGG | + | chr1_2:40300731-40300750 | None:intergenic | 35.0% | |
| TTTGTATGGACAAAGAAGAG+TGG | + | chr1_2:40300732-40300751 | None:intergenic | 35.0% | |
| CATCGTTTCTATAGTATCAG+CGG | + | chr1_2:40300896-40300915 | None:intergenic | 35.0% | |
| !! | TCAACTCCAAAAGGTATTAC+TGG | - | chr1_2:40300983-40301002 | Msa0070250:CDS | 35.0% |
| AGACAGACTAGTAAACTCTT+TGG | - | chr1_2:40301132-40301151 | Msa0070250:CDS | 35.0% | |
| !! | CATGAAGTCAAGTTGAAAGA+CGG | - | chr1_2:40301169-40301188 | Msa0070250:CDS | 35.0% |
| !! | ATGAAGTCAAGTTGAAAGAC+GGG | - | chr1_2:40301170-40301189 | Msa0070250:CDS | 35.0% |
| ! | AATGTCACTTCTTCTGAAGA+AGG | + | chr1_2:40301399-40301418 | None:intergenic | 35.0% |
| ! | TCATTTTCCACGATAAAGTG+TGG | + | chr1_2:40301457-40301476 | None:intergenic | 35.0% |
| AGTTTGAACTAGTAAGGAAC+TGG | - | chr1_2:40301599-40301618 | Msa0070250:intron | 35.0% | |
| TGAGGTTCAATATGGTTGAA+CGG | + | chr1_2:40301908-40301927 | None:intergenic | 35.0% | |
| ! | CACCAAATTGATAATTGAGC+CGG | + | chr1_2:40301947-40301966 | None:intergenic | 35.0% |
| CACATGAAGTTATCTGTTTG+CGG | - | chr1_2:40301994-40302013 | Msa0070250:intron | 35.0% | |
| TATATAACATGCTTGAGAGC+TGG | - | chr1_2:40302069-40302088 | Msa0070250:intron | 35.0% | |
| GTCACAGATATAGCAATAAC+AGG | - | chr1_2:40302095-40302114 | Msa0070250:intron | 35.0% | |
| AGATATAGCAATAACAGGGT+AGG | - | chr1_2:40302100-40302119 | Msa0070250:intron | 35.0% | |
| GATATAGCAATAACAGGGTA+GGG | - | chr1_2:40302101-40302120 | Msa0070250:intron | 35.0% | |
| !!! | AACAATGCTTTTTCTCTGCT+TGG | + | chr1_2:40302392-40302411 | None:intergenic | 35.0% |
| ACACTTTCATCCATGTTTGA+TGG | - | chr1_2:40302575-40302594 | Msa0070250:CDS | 35.0% | |
| TTTCATCCATGTTTGATGGA+AGG | - | chr1_2:40302579-40302598 | Msa0070250:CDS | 35.0% | |
| GGAAGGCCAGTTAATATAAT+TGG | - | chr1_2:40302596-40302615 | Msa0070250:CDS | 35.0% | |
| TGTAGTCATTATCCACCAAA+AGG | + | chr1_2:40302705-40302724 | None:intergenic | 35.0% | |
| ! | ATTGTATAGTCTTGAGCCAA+AGG | + | chr1_2:40302832-40302851 | None:intergenic | 35.0% |
| ATGAAGCTATTTGTGGTACT+TGG | - | chr1_2:40302877-40302896 | Msa0070250:five_prime_UTR | 35.0% | |
| TCTTCTTGCAAGATCAATGA+AGG | + | chr1_2:40302919-40302938 | None:intergenic | 35.0% | |
| !!! | GACATCACTTTTTCTCGTCT+CGG | - | chr1_2:40297761-40297780 | Msa0070250:three_prime_UTR | 40.0% |
| ! | TTGAAGAATGGTTGGTCGAT+CGG | - | chr1_2:40297875-40297894 | Msa0070250:CDS | 40.0% |
| !! | GGAAAAGAGTACCTTCTGAT+TGG | - | chr1_2:40297896-40297915 | Msa0070250:CDS | 40.0% |
| ! | AAACGTTTTCGCCAATCAGA+AGG | + | chr1_2:40297910-40297929 | None:intergenic | 40.0% |
| ! | GGAATTTTCTTCCCTTCCTA+AGG | - | chr1_2:40297957-40297976 | Msa0070250:CDS | 40.0% |
| AAAAGGGGATCAGAATCCTT+AGG | + | chr1_2:40297976-40297995 | None:intergenic | 40.0% | |
| ! | AGGGTCTAGGGTTTGAAAAA+GGG | + | chr1_2:40297992-40298011 | None:intergenic | 40.0% |
| AAACAAACCTTCAGGGTCTA+GGG | + | chr1_2:40298004-40298023 | None:intergenic | 40.0% | |
| AAAACAAACCTTCAGGGTCT+AGG | + | chr1_2:40298005-40298024 | None:intergenic | 40.0% | |
| !! | TGGATTAGTGTGTGTTTGGT+TGG | - | chr1_2:40298074-40298093 | Msa0070250:intron | 40.0% |
| ! | GTCAACTTGCTTGCATAAGA+TGG | - | chr1_2:40299085-40299104 | Msa0070250:intron | 40.0% |
| TGAAGTCTACTACGGAAAGT+AGG | - | chr1_2:40299183-40299202 | Msa0070250:intron | 40.0% | |
| ! | GATTATTTGGTTAGGGTGCT+TGG | - | chr1_2:40299301-40299320 | Msa0070250:CDS | 40.0% |
| ! | GAGAAGGATCATGTTTTCCT+TGG | - | chr1_2:40299345-40299364 | Msa0070250:CDS | 40.0% |
| AAGTCCTTATCAGAGGAAAC+AGG | - | chr1_2:40299500-40299519 | Msa0070250:intron | 40.0% | |
| !! | AAAAAGAAGTGCTGCACTCT+CGG | - | chr1_2:40299575-40299594 | Msa0070250:CDS | 40.0% |
| CTCACACTGAAAAGGATGTA+AGG | - | chr1_2:40299838-40299857 | Msa0070250:intron | 40.0% | |
| AAGCTGTACTGCAAAACTTG+AGG | - | chr1_2:40300017-40300036 | Msa0070250:CDS | 40.0% | |
| !! | AAATGTTGCTGTTGACTCTG+AGG | - | chr1_2:40300066-40300085 | Msa0070250:CDS | 40.0% |
| ACTTCCACATTGCTTTCTTC+AGG | + | chr1_2:40300136-40300155 | None:intergenic | 40.0% | |
| GAAATATCCCAGTCAATGTC+AGG | + | chr1_2:40300166-40300185 | None:intergenic | 40.0% | |
| ! | CATTGACTGGGATATTTCAG+TGG | - | chr1_2:40300168-40300187 | Msa0070250:CDS | 40.0% |
| TCAGACTTCTTCATCAACTG+AGG | - | chr1_2:40300291-40300310 | Msa0070250:CDS | 40.0% | |
| TCTTCATCAACTGAGGATGT+CGG | - | chr1_2:40300298-40300317 | Msa0070250:CDS | 40.0% | |
| CAGTTGACAGAAAACAAGGA+AGG | - | chr1_2:40300475-40300494 | Msa0070250:CDS | 40.0% | |
| TGACAGAAAACAAGGAAGGA+AGG | - | chr1_2:40300479-40300498 | Msa0070250:CDS | 40.0% | |
| TGTACTCTGTGTCTAAAAGC+TGG | + | chr1_2:40300507-40300526 | None:intergenic | 40.0% | |
| GATTCTCGACGATCTATATG+AGG | - | chr1_2:40300534-40300553 | Msa0070250:intron | 40.0% | |
| AACCAAGACCTTGGTAGAAT+AGG | + | chr1_2:40300582-40300601 | None:intergenic | 40.0% | |
| TATGAGTGAAACCAAGACCT+TGG | + | chr1_2:40300591-40300610 | None:intergenic | 40.0% | |
| CTCATATGTTTATCGAGGGT+GGG | + | chr1_2:40300702-40300721 | None:intergenic | 40.0% | |
| ACTCATATGTTTATCGAGGG+TGG | + | chr1_2:40300703-40300722 | None:intergenic | 40.0% | |
| GTTAGCTGAATTGAAGAACG+AGG | - | chr1_2:40300810-40300829 | Msa0070250:intron | 40.0% | |
| GTCGCTACAAAATCAAGTAC+AGG | - | chr1_2:40300840-40300859 | Msa0070250:intron | 40.0% | |
| GCTACAAAATCAAGTACAGG+CGG | - | chr1_2:40300843-40300862 | Msa0070250:intron | 40.0% | |
| GCATACTGCTGTAGTACAAA+GGG | + | chr1_2:40300874-40300893 | None:intergenic | 40.0% | |
| TGCTGACAAATAGGAAGACA+AGG | - | chr1_2:40300944-40300963 | Msa0070250:CDS | 40.0% | |
| GCTGACAAATAGGAAGACAA+GGG | - | chr1_2:40300945-40300964 | Msa0070250:CDS | 40.0% | |
| CAGACTAGTAAACTCTTTGG+AGG | - | chr1_2:40301135-40301154 | Msa0070250:CDS | 40.0% | |
| TTGTGTGCTCGTTCAATGTT+AGG | - | chr1_2:40301272-40301291 | Msa0070250:intron | 40.0% | |
| TGTGTGCTCGTTCAATGTTA+GGG | - | chr1_2:40301273-40301292 | Msa0070250:intron | 40.0% | |
| GAATGGAAGGAAGAGAAACA+AGG | + | chr1_2:40301363-40301382 | None:intergenic | 40.0% | |
| CTAGATACCACACTTTATCG+TGG | - | chr1_2:40301447-40301466 | Msa0070250:intron | 40.0% | |
| GTTCAACTAGTCAAACTGGA+CGG | + | chr1_2:40301525-40301544 | None:intergenic | 40.0% | |
| TACGGTTCAACTAGTCAAAC+TGG | + | chr1_2:40301529-40301548 | None:intergenic | 40.0% | |
| !! | ATGAATCCCTGACTGGTTTA+CGG | + | chr1_2:40301547-40301566 | None:intergenic | 40.0% |
| ! | TTGAGATTGGCTGGGATATT+GGG | + | chr1_2:40301575-40301594 | None:intergenic | 40.0% |
| ! | TTTGAGATTGGCTGGGATAT+TGG | + | chr1_2:40301576-40301595 | None:intergenic | 40.0% |
| CTGAAGCTTGAGGTTCAATA+TGG | + | chr1_2:40301916-40301935 | None:intergenic | 40.0% | |
| ! | ATTGATAATTGAGCCGGTGA+AGG | + | chr1_2:40301941-40301960 | None:intergenic | 40.0% |
| !! | CACCGGCTCAATTATCAATT+TGG | - | chr1_2:40301942-40301961 | Msa0070250:intron | 40.0% |
| TTGTTCCATTGCATATGCAC+CGG | - | chr1_2:40302407-40302426 | Msa0070250:intron | 40.0% | |
| !!! | TTAATGCTGTTTCCCCCTTT+TGG | - | chr1_2:40302445-40302464 | Msa0070250:intron | 40.0% |
| !!! | CTAAGTTTTGAGTGAATCGC+AGG | - | chr1_2:40302505-40302524 | Msa0070250:CDS | 40.0% |
| GATTGAAGAGAAACTTCCTC+TGG | - | chr1_2:40302668-40302687 | Msa0070250:intron | 40.0% | |
| GCATTGCGAATGAAGATCAC+AGG | + | chr1_2:40297709-40297728 | None:intergenic | 45.0% | |
| TGGAAGGTTGCGAATATCGT+CGG | + | chr1_2:40297738-40297757 | None:intergenic | 45.0% | |
| !!! | ATCACTTTTTCTCGTCTCGG+AGG | - | chr1_2:40297764-40297783 | Msa0070250:three_prime_UTR | 45.0% |
| GGGATCAGAATCCTTAGGAA+GGG | + | chr1_2:40297971-40297990 | None:intergenic | 45.0% | |
| ! | GGGTCTAGGGTTTGAAAAAG+GGG | + | chr1_2:40297991-40298010 | None:intergenic | 45.0% |
| ! | CAGGGTCTAGGGTTTGAAAA+AGG | + | chr1_2:40297993-40298012 | None:intergenic | 45.0% |
| TTTCAAACCCTAGACCCTGA+AGG | - | chr1_2:40297994-40298013 | Msa0070250:intron | 45.0% | |
| ! | GGATCATGTTTTCCTTGGTG+AGG | - | chr1_2:40299350-40299369 | Msa0070250:CDS | 45.0% |
| TAATAAGTGCAGCCTCACCA+AGG | + | chr1_2:40299365-40299384 | None:intergenic | 45.0% | |
| TGCACCTGTTTCCTCTGATA+AGG | + | chr1_2:40299507-40299526 | None:intergenic | 45.0% | |
| ! | CCTACAGGTTGGGATTTAGA+CGG | - | chr1_2:40299632-40299651 | Msa0070250:CDS | 45.0% |
| AAGATCCTGCTAAACGTGCT+TGG | + | chr1_2:40299753-40299772 | None:intergenic | 45.0% | |
| AAGCACGTTTAGCAGGATCT+TGG | - | chr1_2:40299752-40299771 | Msa0070250:intron | 45.0% | |
| CAGAGATGCTCACACTGAAA+AGG | - | chr1_2:40299830-40299849 | Msa0070250:intron | 45.0% | |
| AGTTGCAGGAACAATGCATC+AGG | + | chr1_2:40299905-40299924 | None:intergenic | 45.0% | |
| TGGAACTGTAGAAGAAACGG+AGG | - | chr1_2:40300216-40300235 | Msa0070250:CDS | 45.0% | |
| GTAGAAGAAACGGAGGATAC+CGG | - | chr1_2:40300223-40300242 | Msa0070250:CDS | 45.0% | |
| ATATGGACCCAAGCCATTAC+CGG | + | chr1_2:40300245-40300264 | None:intergenic | 45.0% | |
| CTCGCATGCAGATATATGCT+GGG | - | chr1_2:40300354-40300373 | Msa0070250:CDS | 45.0% | |
| GAATGCATCAAATGCAGTGC+TGG | - | chr1_2:40300420-40300439 | Msa0070250:CDS | 45.0% | |
| ! | CTGAGATAAGGCATCTGGAA+GGG | + | chr1_2:40300458-40300477 | None:intergenic | 45.0% |
| ! | ACTGAGATAAGGCATCTGGA+AGG | + | chr1_2:40300459-40300478 | None:intergenic | 45.0% |
| ! | GTCAACTGAGATAAGGCATC+TGG | + | chr1_2:40300463-40300482 | None:intergenic | 45.0% |
| GCTTACCTCCTATTCTACCA+AGG | - | chr1_2:40300571-40300590 | Msa0070250:intron | 45.0% | |
| CAAGACCTTGGTAGAATAGG+AGG | + | chr1_2:40300579-40300598 | None:intergenic | 45.0% | |
| CTCCTATTCTACCAAGGTCT+TGG | - | chr1_2:40300577-40300596 | Msa0070250:intron | 45.0% | |
| TTCTGCCTGTCCAAGGATAT+AGG | + | chr1_2:40300620-40300639 | None:intergenic | 45.0% | |
| TGTTTCTTTCTGCCTGTCCA+AGG | + | chr1_2:40300627-40300646 | None:intergenic | 45.0% | |
| GGCATACTGCTGTAGTACAA+AGG | + | chr1_2:40300875-40300894 | None:intergenic | 45.0% | |
| !! | CAAGTTGAAAGACGGGTTGA+AGG | - | chr1_2:40301177-40301196 | Msa0070250:intron | 45.0% |
| GTGTGCTCGTTCAATGTTAG+GGG | - | chr1_2:40301274-40301293 | Msa0070250:CDS | 45.0% | |
| !! | TCAAACTGGACGGTTTGGTA+TGG | + | chr1_2:40301515-40301534 | None:intergenic | 45.0% |
| ACTAGTCAAACTGGACGGTT+TGG | + | chr1_2:40301520-40301539 | None:intergenic | 45.0% | |
| AGTTGAACCGTAAACCAGTC+AGG | - | chr1_2:40301537-40301556 | Msa0070250:intron | 45.0% | |
| GTTGAACCGTAAACCAGTCA+GGG | - | chr1_2:40301538-40301557 | Msa0070250:intron | 45.0% | |
| GGCTTAAATGAATCCCTGAC+TGG | + | chr1_2:40301554-40301573 | None:intergenic | 45.0% | |
| TGGTCTGCCTAGTGTTAAAC+CGG | - | chr1_2:40301619-40301638 | Msa0070250:intron | 45.0% | |
| TTCAAACCACTTCTCACCAC+CGG | + | chr1_2:40301641-40301660 | None:intergenic | 45.0% | |
| TCAAGCTTCAGTACCTTCAC+CGG | - | chr1_2:40301925-40301944 | Msa0070250:intron | 45.0% | |
| TAACATGCTTGAGAGCTGGA+AGG | - | chr1_2:40302073-40302092 | Msa0070250:intron | 45.0% | |
| TGAGTGAGAACTACTCTGTG+GGG | + | chr1_2:40302142-40302161 | None:intergenic | 45.0% | |
| GTGAGTGAGAACTACTCTGT+GGG | + | chr1_2:40302143-40302162 | None:intergenic | 45.0% | |
| TGTGAGTGAGAACTACTCTG+TGG | + | chr1_2:40302144-40302163 | None:intergenic | 45.0% | |
| AACCAGTGAAAGGGCCAAAA+GGG | + | chr1_2:40302462-40302481 | None:intergenic | 45.0% | |
| AAACCAGTGAAAGGGCCAAA+AGG | + | chr1_2:40302463-40302482 | None:intergenic | 45.0% | |
| TTTGAGTGAATCGCAGGATG+CGG | - | chr1_2:40302511-40302530 | Msa0070250:CDS | 45.0% | |
| TGCGGCTGTGACAAAAACAA+AGG | - | chr1_2:40302529-40302548 | Msa0070250:CDS | 45.0% | |
| !! | AACTGGCCTTCCATCAAACA+TGG | + | chr1_2:40302588-40302607 | None:intergenic | 45.0% |
| ATCAACACTCTGTTGACCAG+TGG | - | chr1_2:40302623-40302642 | Msa0070250:intron | 45.0% | |
| AAAGGCTTCATCACTACCAG+AGG | + | chr1_2:40302687-40302706 | None:intergenic | 45.0% | |
| !! | CTGGTAGTGATGAAGCCTTT+TGG | - | chr1_2:40302687-40302706 | Msa0070250:intron | 45.0% |
| ! | GTAGTGATGAAGCCTTTTGG+TGG | - | chr1_2:40302690-40302709 | Msa0070250:intron | 45.0% |
| GGAAGGTTGCGAATATCGTC+GGG | + | chr1_2:40297737-40297756 | None:intergenic | 50.0% | |
| GGGGATCAGAATCCTTAGGA+AGG | + | chr1_2:40297972-40297991 | None:intergenic | 50.0% | |
| TGAGTATCTCACCGCAGAAC+CGG | + | chr1_2:40299228-40299247 | None:intergenic | 50.0% | |
| GCAGAAGATTCAACAGCAGC+TGG | - | chr1_2:40299524-40299543 | Msa0070250:CDS | 50.0% | |
| GTTGAAGCTTGTCAGGAGCT+TGG | - | chr1_2:40299609-40299628 | Msa0070250:CDS | 50.0% | |
| CCGTCTAAATCCCAACCTGT+AGG | + | chr1_2:40299635-40299654 | None:intergenic | 50.0% | |
| CACTTCCAAGCACGTTTAGC+AGG | - | chr1_2:40299745-40299764 | Msa0070250:intron | 50.0% | |
| TTGCTGCTCCTGACATTGAC+TGG | - | chr1_2:40300155-40300174 | Msa0070250:CDS | 50.0% | |
| ! | TGCTGCTCCTGACATTGACT+GGG | - | chr1_2:40300156-40300175 | Msa0070250:CDS | 50.0% |
| GAAACGGAGGATACCGGTAA+TGG | - | chr1_2:40300229-40300248 | Msa0070250:CDS | 50.0% | |
| ! | GAGGATACCGGTAATGGCTT+GGG | - | chr1_2:40300235-40300254 | Msa0070250:CDS | 50.0% |
| AGAAGTCTGAATGGCCTCAG+AGG | + | chr1_2:40300281-40300300 | None:intergenic | 50.0% | |
| GCTCGCATGCAGATATATGC+TGG | - | chr1_2:40300353-40300372 | Msa0070250:CDS | 50.0% | |
| !! | GAAAGACGGGTTGAAGGACT+TGG | - | chr1_2:40301183-40301202 | Msa0070250:intron | 50.0% |
| TCTGCCTAGTGTTAAACCGG+TGG | - | chr1_2:40301622-40301641 | Msa0070250:intron | 50.0% | |
| !! | CTCACCACCGGTTTAACACT+AGG | + | chr1_2:40301629-40301648 | None:intergenic | 50.0% |
| GTTAAACCGGTGGTGAGAAG+TGG | - | chr1_2:40301632-40301651 | Msa0070250:intron | 50.0% | |
| !! | GGTGAAGGTACTGAAGCTTG+AGG | + | chr1_2:40301926-40301945 | None:intergenic | 50.0% |
| ! | TCCATTGCATATGCACCGGT+TGG | - | chr1_2:40302411-40302430 | Msa0070250:intron | 50.0% |
| ACCAGTGAAAGGGCCAAAAG+GGG | + | chr1_2:40302461-40302480 | None:intergenic | 50.0% | |
| ACTCTGTTGACCAGTGGTCT+TGG | - | chr1_2:40302629-40302648 | Msa0070250:intron | 50.0% | |
| TCATCATGCTCCAAGACCAC+TGG | + | chr1_2:40302642-40302661 | None:intergenic | 50.0% | |
| TGGTCGTCTTTCCGGTTCTG+CGG | - | chr1_2:40299214-40299233 | Msa0070250:intron | 55.0% | |
| GCTGGCAGAACTTGATCGCA+AGG | - | chr1_2:40299542-40299561 | Msa0070250:CDS | 55.0% | |
| GGCAGAACTTGATCGCAAGG+AGG | - | chr1_2:40299545-40299564 | Msa0070250:CDS | 55.0% | |
| TTGTCAGGAGCTTGGCCTAC+AGG | - | chr1_2:40299617-40299636 | Msa0070250:CDS | 55.0% | |
| AGGAGCTTGGCCTACAGGTT+GGG | - | chr1_2:40299622-40299641 | Msa0070250:CDS | 55.0% | |
| ! | GGAGGATACCGGTAATGGCT+TGG | - | chr1_2:40300234-40300253 | Msa0070250:CDS | 55.0% |
| GGACTTGGCTACTAAGCGCA+TGG | - | chr1_2:40301198-40301217 | Msa0070250:intron | 55.0% | |
| GCCAACCGGTGCATATGCAA+TGG | + | chr1_2:40302415-40302434 | None:intergenic | 55.0% | |
| CCAGTGAAAGGGCCAAAAGG+GGG | + | chr1_2:40302460-40302479 | None:intergenic | 55.0% | |
| CAGGAGCTTGGCCTACAGGT+TGG | - | chr1_2:40299621-40299640 | Msa0070250:CDS | 60.0% | |
| ! | CCCCCTTTTGGCCCTTTCAC+TGG | - | chr1_2:40302457-40302476 | Msa0070250:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 40297551 | 40302958 | 40297551 | ID=Msa0070250;Name=Msa0070250 |
| chr1_2 | mRNA | 40297551 | 40302958 | 40297551 | ID=Msa0070250-mRNA-1;Parent=Msa0070250;Name=Msa0070250-mRNA-1;_AED=0.04;_eAED=0.04;_QI=174|1|1|1|1|1|10|300|564 |
| chr1_2 | exon | 40297551 | 40297982 | 40297551 | ID=Msa0070250-mRNA-1:exon:12349;Parent=Msa0070250-mRNA-1 |
| chr1_2 | exon | 40299251 | 40299383 | 40299251 | ID=Msa0070250-mRNA-1:exon:12348;Parent=Msa0070250-mRNA-1 |
| chr1_2 | exon | 40299514 | 40299722 | 40299514 | ID=Msa0070250-mRNA-1:exon:12347;Parent=Msa0070250-mRNA-1 |
| chr1_2 | exon | 40299954 | 40300502 | 40299954 | ID=Msa0070250-mRNA-1:exon:12346;Parent=Msa0070250-mRNA-1 |
| chr1_2 | exon | 40300655 | 40300804 | 40300655 | ID=Msa0070250-mRNA-1:exon:12345;Parent=Msa0070250-mRNA-1 |
| chr1_2 | exon | 40300871 | 40301006 | 40300871 | ID=Msa0070250-mRNA-1:exon:12344;Parent=Msa0070250-mRNA-1 |
| chr1_2 | exon | 40301100 | 40301194 | 40301100 | ID=Msa0070250-mRNA-1:exon:12343;Parent=Msa0070250-mRNA-1 |
| chr1_2 | exon | 40301274 | 40301368 | 40301274 | ID=Msa0070250-mRNA-1:exon:12342;Parent=Msa0070250-mRNA-1 |
| chr1_2 | exon | 40302494 | 40302628 | 40302494 | ID=Msa0070250-mRNA-1:exon:12341;Parent=Msa0070250-mRNA-1 |
| chr1_2 | exon | 40302724 | 40302958 | 40302724 | ID=Msa0070250-mRNA-1:exon:12340;Parent=Msa0070250-mRNA-1 |
| chr1_2 | five_prime_UTR | 40302785 | 40302958 | 40302785 | ID=Msa0070250-mRNA-1:five_prime_utr;Parent=Msa0070250-mRNA-1 |
| chr1_2 | CDS | 40302724 | 40302784 | 40302724 | ID=Msa0070250-mRNA-1:cds;Parent=Msa0070250-mRNA-1 |
| chr1_2 | CDS | 40302494 | 40302628 | 40302494 | ID=Msa0070250-mRNA-1:cds;Parent=Msa0070250-mRNA-1 |
| chr1_2 | CDS | 40301274 | 40301368 | 40301274 | ID=Msa0070250-mRNA-1:cds;Parent=Msa0070250-mRNA-1 |
| chr1_2 | CDS | 40301100 | 40301194 | 40301100 | ID=Msa0070250-mRNA-1:cds;Parent=Msa0070250-mRNA-1 |
| chr1_2 | CDS | 40300871 | 40301006 | 40300871 | ID=Msa0070250-mRNA-1:cds;Parent=Msa0070250-mRNA-1 |
| chr1_2 | CDS | 40300655 | 40300804 | 40300655 | ID=Msa0070250-mRNA-1:cds;Parent=Msa0070250-mRNA-1 |
| chr1_2 | CDS | 40299954 | 40300502 | 40299954 | ID=Msa0070250-mRNA-1:cds;Parent=Msa0070250-mRNA-1 |
| chr1_2 | CDS | 40299514 | 40299722 | 40299514 | ID=Msa0070250-mRNA-1:cds;Parent=Msa0070250-mRNA-1 |
| chr1_2 | CDS | 40299251 | 40299383 | 40299251 | ID=Msa0070250-mRNA-1:cds;Parent=Msa0070250-mRNA-1 |
| chr1_2 | CDS | 40297851 | 40297982 | 40297851 | ID=Msa0070250-mRNA-1:cds;Parent=Msa0070250-mRNA-1 |
| chr1_2 | three_prime_UTR | 40297551 | 40297850 | 40297551 | ID=Msa0070250-mRNA-1:three_prime_utr;Parent=Msa0070250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
