Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089790 | sp|Q6PGU2|MAF1_DANRE | 37.963 | 216 | 121 | 7 | 1 | 209 | 1 | 210 | 3.23e-31 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089790 | G7IAU6 | 97.835 | 231 | 5 | 0 | 1 | 231 | 1 | 231 | 2.76e-163 | 459 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0089790 | Msa0672570 | 0.808277 | 3.351926e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089790 | MtrunA17_Chr1g0208601 | 97.835 | 231 | 5 | 0 | 1 | 231 | 1 | 231 | 5.32e-167 | 459 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089790 | AT5G13240.1 | 67.532 | 231 | 68 | 1 | 1 | 231 | 1 | 224 | 4.26e-108 | 310 |
| Msa0089790 | AT5G13240.3 | 67.532 | 231 | 68 | 1 | 1 | 231 | 21 | 244 | 1.23e-107 | 310 |
| Msa0089790 | AT5G13240.2 | 69.458 | 203 | 55 | 1 | 1 | 203 | 1 | 196 | 2.02e-99 | 289 |
Find 79 sgRNAs with CRISPR-Local
Find 383 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGACGATTGTGAAATTTA+TGG | 0.147833 | 1_2:-71451270 | Msa0089790:CDS |
| GATGTTAGGGTTTGAAAATT+TGG | 0.211442 | 1_2:+71456384 | None:intergenic |
| ATGTTAGGGTTTGAAAATTT+GGG | 0.232303 | 1_2:+71456385 | None:intergenic |
| GTAATAGATGTGGTATTTCT+AGG | 0.254695 | 1_2:-71450740 | Msa0089790:three_prime_UTR |
| GTTGGAGCCACGATTATTAA+TGG | 0.262285 | 1_2:-71450551 | Msa0089790:three_prime_UTR |
| TTGAGTGTCCATAGTAGATT+TGG | 0.278835 | 1_2:-71450657 | Msa0089790:three_prime_UTR |
| TTTCAGATTCTTGATTATCT+TGG | 0.289387 | 1_2:-71454894 | Msa0089790:intron |
| TTTCTTGAGTAATTTGAATC+TGG | 0.291533 | 1_2:-71455967 | Msa0089790:CDS |
| CAGGAATGGGCTGAAACCTT+TGG | 0.291894 | 1_2:-71451427 | Msa0089790:CDS |
| GTTCCTTGAATGTGCTCCTT+TGG | 0.292550 | 1_2:-71456098 | Msa0089790:CDS |
| AGGAATGGGCTGAAACCTTT+GGG | 0.304946 | 1_2:-71451426 | Msa0089790:CDS |
| TAATTTATAGGTAAACATTC+TGG | 0.308249 | 1_2:-71455825 | Msa0089790:intron |
| GGATTAGGAAGCGGTGAAAA+TGG | 0.316126 | 1_2:+71456418 | None:intergenic |
| AAACGTAGATTTGCGATGTT+AGG | 0.331588 | 1_2:+71456370 | None:intergenic |
| ATTGTAAAACAAGAAATTAA+AGG | 0.332767 | 1_2:+71451096 | None:intergenic |
| AAAATGTTCTAGCGGAAATC+TGG | 0.335545 | 1_2:-71456532 | Msa0089790:five_prime_UTR |
| ACGTAATGGCTACCTGGTTC+TGG | 0.351408 | 1_2:+71454803 | None:intergenic |
| GAAAGAAGACGAAAATTGAT+TGG | 0.369651 | 1_2:+71456323 | None:intergenic |
| TCTGCTGGATGCCTTGTTCA+AGG | 0.373383 | 1_2:-71451395 | Msa0089790:CDS |
| TTGGAGCCACGATTATTAAT+GGG | 0.386765 | 1_2:-71450550 | Msa0089790:three_prime_UTR |
| TACAGATTCCAAATCTACTA+TGG | 0.404690 | 1_2:+71450649 | None:intergenic |
| CTACCTGGTTCTGGCTGATA+AGG | 0.405541 | 1_2:+71454812 | None:intergenic |
| GAAATACCACATCTATTACT+AGG | 0.410878 | 1_2:+71450744 | None:intergenic |
| CACATTGGAGGATGGGTGTC+TGG | 0.413050 | 1_2:+71450826 | None:intergenic |
| CTAGGTAAACCAATGTCTTC+CGG | 0.421118 | 1_2:+71454702 | None:intergenic |
| GGAGTCAACCGGTGAGGATA+AGG | 0.421694 | 1_2:+71454833 | None:intergenic |
| AACGGATCTGCCTCAGAATC+AGG | 0.422708 | 1_2:+71451240 | None:intergenic |
| GTTTAATAGTAGCACCTTTG+AGG | 0.428499 | 1_2:+71454225 | None:intergenic |
| TTCTTGAGTAATTTGAATCT+GGG | 0.431740 | 1_2:-71455966 | Msa0089790:CDS |
| AGGTACCTGAAGTCATAATC+TGG | 0.433796 | 1_2:+71454656 | None:intergenic |
| ACATACATGGCTCCTCTCTC+TGG | 0.434067 | 1_2:+71451216 | None:intergenic |
| GTTACATGCACATATAATAT+AGG | 0.455708 | 1_2:+71450626 | None:intergenic |
| AACGTAGATTTGCGATGTTA+GGG | 0.466750 | 1_2:+71456371 | None:intergenic |
| TGTATCCAGATTATGACTTC+AGG | 0.467932 | 1_2:-71454661 | Msa0089790:intron |
| AATCTGGATACATGTGATAG+AGG | 0.487438 | 1_2:+71454672 | None:intergenic |
| GGCAGTAACTTGATTGCTGA+TGG | 0.509679 | 1_2:-71450943 | Msa0089790:intron |
| GATCCAAAGGAGCACATTCA+AGG | 0.513296 | 1_2:+71456095 | None:intergenic |
| GCATGTAACTAATCTTAGTC+AGG | 0.517302 | 1_2:-71450612 | Msa0089790:three_prime_UTR |
| CTGGCTGATAAGGAGTCAAC+CGG | 0.517569 | 1_2:+71454822 | None:intergenic |
| TGTAATATAATGAGTTTATG+TGG | 0.520368 | 1_2:-71450770 | Msa0089790:three_prime_UTR |
| CTCTATCAGTTTGAGTAATG+AGG | 0.524882 | 1_2:-71455787 | Msa0089790:intron |
| TTGAATGTGCTCCTTTGGAT+CGG | 0.530850 | 1_2:-71456093 | Msa0089790:intron |
| AAATACCACATCTATTACTA+GGG | 0.533866 | 1_2:+71450745 | None:intergenic |
| CTGGGAGAACGTACTATCAA+AGG | 0.545323 | 1_2:-71455948 | Msa0089790:CDS |
| AGAAACTGCACATTGGAGGA+TGG | 0.547710 | 1_2:+71450818 | None:intergenic |
| TCTACAACATGCATACATGA+AGG | 0.548280 | 1_2:+71450703 | None:intergenic |
| CTACATGTTTGAAGCCTCAA+AGG | 0.548590 | 1_2:-71454239 | Msa0089790:intron |
| GGTGAGGATAAGGAGTCAAC+CGG | 0.552247 | 1_2:+71454843 | None:intergenic |
| TGTGATAGAGGGCAAGAACT+AGG | 0.557823 | 1_2:+71454684 | None:intergenic |
| CTCATCAACGGCCTTGAACA+AGG | 0.562258 | 1_2:+71451384 | None:intergenic |
| ACTCCTTATCAGCCAGAACC+AGG | 0.563412 | 1_2:-71454815 | Msa0089790:intron |
| CTACAGAAACTGCACATTGG+AGG | 0.564362 | 1_2:+71450814 | None:intergenic |
| ATCTGGATACATGTGATAGA+GGG | 0.565760 | 1_2:+71454673 | None:intergenic |
| TGGTTATTTACCTGATTCTG+AGG | 0.565862 | 1_2:-71451250 | Msa0089790:CDS |
| TGTTAGGGTTTGAAAATTTG+GGG | 0.569680 | 1_2:+71456386 | None:intergenic |
| TGATGAAATATTTGCTGACA+TGG | 0.571848 | 1_2:-71450887 | Msa0089790:CDS |
| GGAATGGGCTGAAACCTTTG+GGG | 0.575212 | 1_2:-71451425 | Msa0089790:CDS |
| TTTACAATAGAAAGCTTAAG+CGG | 0.576192 | 1_2:-71451081 | Msa0089790:CDS |
| GAAACTGCACATTGGAGGAT+GGG | 0.577632 | 1_2:+71450819 | None:intergenic |
| TAATATCCCATTAATAATCG+TGG | 0.578444 | 1_2:+71450544 | None:intergenic |
| ATGGCTCCTCTCTCTGGTAA+CGG | 0.580752 | 1_2:+71451222 | None:intergenic |
| TGACAATGACTCTCCCTCAC+CGG | 0.580919 | 1_2:-71454862 | Msa0089790:CDS |
| GATAAGGAGTCAACCGGTGA+GGG | 0.589433 | 1_2:+71454849 | None:intergenic |
| CTTTGAGGCTTCAAACATGT+AGG | 0.589437 | 1_2:+71454240 | None:intergenic |
| GGTTGACTCCTTATCCTCAC+CGG | 0.593174 | 1_2:-71454841 | Msa0089790:CDS |
| AATGAAACTCACCTCATCAA+CGG | 0.608808 | 1_2:+71451372 | None:intergenic |
| AGTTTCAATTACCGATCCAA+AGG | 0.609290 | 1_2:+71456082 | None:intergenic |
| GCAGATCCGTTACCAGAGAG+AGG | 0.613422 | 1_2:-71451228 | Msa0089790:CDS |
| GAAATAAAGGGATTAGGAAG+CGG | 0.614363 | 1_2:+71456409 | None:intergenic |
| CTACAACATGCATACATGAA+GGG | 0.627771 | 1_2:+71450704 | None:intergenic |
| CTTGTTCAAGGCCGTTGATG+AGG | 0.631443 | 1_2:-71451383 | Msa0089790:intron |
| GCACTACAGAAACTGCACAT+TGG | 0.643073 | 1_2:+71450811 | None:intergenic |
| GGATAAGGAGTCAACCGGTG+AGG | 0.648898 | 1_2:+71454848 | None:intergenic |
| GTTAGGGTTTGAAAATTTGG+GGG | 0.661142 | 1_2:+71456387 | None:intergenic |
| GAATGGGCTGAAACCTTTGG+GGG | 0.668176 | 1_2:-71451424 | Msa0089790:CDS |
| GTTACGTGGAAGATAGAGAG+AGG | 0.676246 | 1_2:+71456471 | None:intergenic |
| TGGCGCCCTAGTAATAGATG+TGG | 0.680115 | 1_2:-71450750 | Msa0089790:three_prime_UTR |
| TGATAAGGAGTCAACCGGTG+AGG | 0.682765 | 1_2:+71454827 | None:intergenic |
| ATTTAGATCAGATCGTTACG+TGG | 0.696630 | 1_2:+71456457 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTAAAAGTAGAATTA+AGG | - | chr1_2:71451821-71451840 | Msa0089790:intron | 10.0% |
| !!! | TTTTATTAAAAGTAGAATTA+AGG | - | chr1_2:71451821-71451840 | Msa0089790:intron | 10.0% |
| !! | TAAAAAAAAACTTAAAAAGA+AGG | - | chr1_2:71452472-71452491 | Msa0089790:intron | 10.0% |
| !! | TAATAACTGAATAAAAAAAA+CGG | + | chr1_2:71454626-71454645 | None:intergenic | 10.0% |
| !!! | TTTTTTTTATTAAACATTAG+TGG | - | chr1_2:71455072-71455091 | Msa0089790:intron | 10.0% |
| !! | TAAAGTTTATAATTCTAATT+AGG | + | chr1_2:71455159-71455178 | None:intergenic | 10.0% |
| !! | AAATATAATAATTACATACA+TGG | + | chr1_2:71455866-71455885 | None:intergenic | 10.0% |
| !! | AAAAAATAAAAATGTTCTAG+CGG | - | chr1_2:71450526-71450545 | Msa0089790:three_prime_UTR | 15.0% |
| !!! | CATAAATGAAATTTGTTTTT+TGG | - | chr1_2:71451179-71451198 | Msa0089790:intron | 15.0% |
| !!! | GTTAGTTGTATTTAATTTAT+AGG | - | chr1_2:71451229-71451248 | Msa0089790:CDS | 15.0% |
| !! | AAGTGTTAATAGTATAATTA+AGG | - | chr1_2:71451356-71451375 | Msa0089790:intron | 15.0% |
| !! | AAGTATTAAAAGTAGAATTA+AGG | - | chr1_2:71451665-71451684 | Msa0089790:intron | 15.0% |
| !!! | TTGCTAATTAAGAATTTTTT+TGG | - | chr1_2:71451691-71451710 | Msa0089790:intron | 15.0% |
| !!! | TTGCTAATTAAGAATTTTTT+TGG | - | chr1_2:71451691-71451710 | Msa0089790:intron | 15.0% |
| !! | AAATAAAAAGGATTATATAG+CGG | + | chr1_2:71452542-71452561 | None:intergenic | 15.0% |
| !!! | TATAATCCTTTTTATTTCAT+TGG | - | chr1_2:71452545-71452564 | Msa0089790:intron | 15.0% |
| !!! | ATAATCCTTTTTATTTCATT+GGG | - | chr1_2:71452546-71452565 | Msa0089790:intron | 15.0% |
| !! | TCTAAAAATACTTATGATTT+AGG | - | chr1_2:71453061-71453080 | Msa0089790:intron | 15.0% |
| !!! | TTATATTTTTTAACAGAAGA+TGG | - | chr1_2:71454110-71454129 | Msa0089790:intron | 15.0% |
| !!! | AGAAAATAATTTTGAGAAAT+GGG | - | chr1_2:71454391-71454410 | Msa0089790:intron | 15.0% |
| !! | TTAAATGATAAGTTAAGATT+GGG | + | chr1_2:71454531-71454550 | None:intergenic | 15.0% |
| !! | AATAACTGAATAAAAAAAAC+GGG | + | chr1_2:71454625-71454644 | None:intergenic | 15.0% |
| !! | CTATATAATTTCTAATCAAT+TGG | - | chr1_2:71455205-71455224 | Msa0089790:intron | 15.0% |
| !! | ATTGTAAAACAAGAAATTAA+AGG | + | chr1_2:71455973-71455992 | None:intergenic | 15.0% |
| !! | ATTGAATTGAAATTGGAAAT+AGG | + | chr1_2:71450793-71450812 | None:intergenic | 20.0% |
| !!! | TCGATTAATTTTTATCTTAC+AGG | - | chr1_2:71450887-71450906 | Msa0089790:CDS | 20.0% |
| !!! | CGATTAATTTTTATCTTACA+GGG | - | chr1_2:71450888-71450907 | Msa0089790:CDS | 20.0% |
| !! | TTATAGTTGTAAGAATGAAT+TGG | - | chr1_2:71451153-71451172 | Msa0089790:intron | 20.0% |
| !!! | ATTTGTTTTTTGGATTTTGT+TGG | - | chr1_2:71451189-71451208 | Msa0089790:intron | 20.0% |
| !!! | TTTGTTTTTTGGATTTTGTT+GGG | - | chr1_2:71451190-71451209 | Msa0089790:intron | 20.0% |
| !! | TAATTTATAGGTAAACATTC+TGG | - | chr1_2:71451241-71451260 | Msa0089790:CDS | 20.0% |
| !!! | AAACAACTAAGTTTAAAACA+CGG | + | chr1_2:71451729-71451748 | None:intergenic | 20.0% |
| !!! | AAACAACTAAGTTTAAAACA+CGG | + | chr1_2:71451729-71451748 | None:intergenic | 20.0% |
| !!! | AAACAACTAAGTTTAAAACA+CGG | + | chr1_2:71451729-71451748 | None:intergenic | 20.0% |
| !! | AAACTTAAAAAGAAGGATTA+TGG | - | chr1_2:71452479-71452498 | Msa0089790:intron | 20.0% |
| !! | AACTTAAAAAGAAGGATTAT+GGG | - | chr1_2:71452480-71452499 | Msa0089790:intron | 20.0% |
| !! | AATAAAAAGGATTATATAGC+GGG | + | chr1_2:71452541-71452560 | None:intergenic | 20.0% |
| !! | TTATAGGAAAACTAAAAAGA+AGG | + | chr1_2:71452715-71452734 | None:intergenic | 20.0% |
| !! | AAAAATACTTATGATTTAGG+TGG | - | chr1_2:71453064-71453083 | Msa0089790:intron | 20.0% |
| !! | ACTCTTATTGTTTCATATTA+AGG | - | chr1_2:71453173-71453192 | Msa0089790:intron | 20.0% |
| !! | TTCATATTAAGGAAACAAAT+CGG | - | chr1_2:71453184-71453203 | Msa0089790:intron | 20.0% |
| !!! | TTTTTTAAGAAGAGAGAAAT+GGG | - | chr1_2:71453935-71453954 | Msa0089790:intron | 20.0% |
| !! | ATAACTAGATCTTTACAATA+GGG | - | chr1_2:71454255-71454274 | Msa0089790:CDS | 20.0% |
| !!! | GAGAAAATAATTTTGAGAAA+TGG | - | chr1_2:71454390-71454409 | Msa0089790:intron | 20.0% |
| !! | CTTAAATGATAAGTTAAGAT+TGG | + | chr1_2:71454532-71454551 | None:intergenic | 20.0% |
| !! | ATAACTGAATAAAAAAAACG+GGG | + | chr1_2:71454624-71454643 | None:intergenic | 20.0% |
| !! | TAATTAAAGTTTCTCTTAGA+GGG | + | chr1_2:71454730-71454749 | None:intergenic | 20.0% |
| !! | AAGAGAAACTTTAATTAGTA+AGG | - | chr1_2:71454733-71454752 | Msa0089790:intron | 20.0% |
| !!! | AAGAGGACAAATATAATTTT+AGG | - | chr1_2:71455047-71455066 | Msa0089790:intron | 20.0% |
| !!! | AGAGGACAAATATAATTTTA+GGG | - | chr1_2:71455048-71455067 | Msa0089790:intron | 20.0% |
| !! | TTTATTAAACATTAGTGGAA+CGG | - | chr1_2:71455077-71455096 | Msa0089790:intron | 20.0% |
| !! | ATAGAAAAATGAGAAAATCA+TGG | + | chr1_2:71455189-71455208 | None:intergenic | 20.0% |
| !! | CAATAATATTCATTCTTGTT+TGG | - | chr1_2:71455288-71455307 | Msa0089790:intron | 20.0% |
| !! | ACTATACTTAATGTCAATAT+AGG | + | chr1_2:71455478-71455497 | None:intergenic | 20.0% |
| !! | ATGATCTATAATAGATATTG+TGG | + | chr1_2:71455916-71455935 | None:intergenic | 20.0% |
| !! | AAAACAAAAAGATGGTTATT+AGG | + | chr1_2:71455939-71455958 | None:intergenic | 20.0% |
| !! | TGTAATATAATGAGTTTATG+TGG | - | chr1_2:71456296-71456315 | Msa0089790:intron | 20.0% |
| ! | ATGTTAGGGTTTGAAAATTT+GGG | + | chr1_2:71450684-71450703 | None:intergenic | 25.0% |
| ! | GAGAGAAATTGAATTGAAAT+TGG | + | chr1_2:71450800-71450819 | None:intergenic | 25.0% |
| !! | GATATTCTGTTGCATAATTT+TGG | - | chr1_2:71451033-71451052 | Msa0089790:intron | 25.0% |
| !! | GTCTGGTAAAAAATATTTTC+AGG | - | chr1_2:71451068-71451087 | Msa0089790:CDS | 25.0% |
| ! | TTTCTTGAGTAATTTGAATC+TGG | - | chr1_2:71451099-71451118 | Msa0089790:CDS | 25.0% |
| ! | TTCTTGAGTAATTTGAATCT+GGG | - | chr1_2:71451100-71451119 | Msa0089790:CDS | 25.0% |
| !!! | TTGTTTTTTGGATTTTGTTG+GGG | - | chr1_2:71451191-71451210 | Msa0089790:intron | 25.0% |
| !!! | TTGATTGATTTTGACATGTT+TGG | + | chr1_2:71451605-71451624 | None:intergenic | 25.0% |
| !! | TAAATAAATTGAAGTGCCAA+AGG | + | chr1_2:71451799-71451818 | None:intergenic | 25.0% |
| !! | TAAATAAATTGAAGTGCCAA+AGG | + | chr1_2:71451799-71451818 | None:intergenic | 25.0% |
| !! | TAAATAAATTGAAGTGCCAA+AGG | + | chr1_2:71451799-71451818 | None:intergenic | 25.0% |
| ! | TTTCAGATTCTTGATTATCT+TGG | - | chr1_2:71452172-71452191 | Msa0089790:intron | 25.0% |
| ! | TCTCTTTGCAAAACTTATTT+AGG | + | chr1_2:71452293-71452312 | None:intergenic | 25.0% |
| !!! | AATTATATGTTTTTTCCAGC+CGG | - | chr1_2:71452345-71452364 | Msa0089790:intron | 25.0% |
| ! | CAATACATCATAAGATACTA+AGG | + | chr1_2:71452433-71452452 | None:intergenic | 25.0% |
| ! | ATTTGACCACAATAGTATTT+GGG | + | chr1_2:71452645-71452664 | None:intergenic | 25.0% |
| ! | TATTTGACCACAATAGTATT+TGG | + | chr1_2:71452646-71452665 | None:intergenic | 25.0% |
| ! | AGATTTCTTTAAGTATTTGC+AGG | - | chr1_2:71452884-71452903 | Msa0089790:intron | 25.0% |
| ! | CTAAGAGGTAATACAAAATA+TGG | + | chr1_2:71452999-71453018 | None:intergenic | 25.0% |
| ! | TGCATAATATGATAATACCA+TGG | - | chr1_2:71453108-71453127 | Msa0089790:intron | 25.0% |
| ! | AAACAAATCGGTAGAAATAA+TGG | - | chr1_2:71453196-71453215 | Msa0089790:intron | 25.0% |
| !! | AAAATGTTTTCTTCAACCAT+CGG | + | chr1_2:71453852-71453871 | None:intergenic | 25.0% |
| !!! | GTTGAAGAAAACATTTTTTG+AGG | - | chr1_2:71453855-71453874 | Msa0089790:intron | 25.0% |
| !!! | AAACATTTTTTGAGGATAGA+TGG | - | chr1_2:71453863-71453882 | Msa0089790:intron | 25.0% |
| !!! | GTTTTTTAAGAAGAGAGAAA+TGG | - | chr1_2:71453934-71453953 | Msa0089790:intron | 25.0% |
| ! | GAATTGGAAGAAAATAATCA+TGG | - | chr1_2:71454230-71454249 | Msa0089790:intron | 25.0% |
| ! | GATAACTAGATCTTTACAAT+AGG | - | chr1_2:71454254-71454273 | Msa0089790:CDS | 25.0% |
| ! | AACACAATGTATTATCAATG+TGG | + | chr1_2:71454335-71454354 | None:intergenic | 25.0% |
| ! | TACATTGTGTTGAAATTACA+TGG | - | chr1_2:71454344-71454363 | Msa0089790:intron | 25.0% |
| ! | GAAATTACATGGTTAAAGTA+AGG | - | chr1_2:71454355-71454374 | Msa0089790:intron | 25.0% |
| ! | TTAAAGTAAGGAAGGAAAAA+AGG | - | chr1_2:71454367-71454386 | Msa0089790:intron | 25.0% |
| ! | TAAAGTAAGGAAGGAAAAAA+GGG | - | chr1_2:71454368-71454387 | Msa0089790:intron | 25.0% |
| ! | AAAGATAAGCATTTCATATC+AGG | + | chr1_2:71454440-71454459 | None:intergenic | 25.0% |
| ! | TTCATTATAGGTTTATGACT+TGG | + | chr1_2:71454690-71454709 | None:intergenic | 25.0% |
| ! | TGTAATTTCCTCTTCATTAT+AGG | + | chr1_2:71454702-71454721 | None:intergenic | 25.0% |
| ! | AATTAAAGTTTCTCTTAGAG+GGG | + | chr1_2:71454729-71454748 | None:intergenic | 25.0% |
| ! | CTAATTAAAGTTTCTCTTAG+AGG | + | chr1_2:71454731-71454750 | None:intergenic | 25.0% |
| ! | ATTGAAAATCAATACAGACT+AGG | + | chr1_2:71454844-71454863 | None:intergenic | 25.0% |
| !! | AAAAAACAGTATTGAAGAAG+AGG | - | chr1_2:71455030-71455049 | Msa0089790:intron | 25.0% |
| !!! | GATATTTTATTTTGTGATGC+AGG | - | chr1_2:71455765-71455784 | Msa0089790:intron | 25.0% |
| ! | TTAGACGATTGTGAAATTTA+TGG | - | chr1_2:71455796-71455815 | Msa0089790:CDS | 25.0% |
| ! | TTTACAATAGAAAGCTTAAG+CGG | - | chr1_2:71455985-71456004 | Msa0089790:intron | 25.0% |
| ! | AAATACCACATCTATTACTA+GGG | + | chr1_2:71456324-71456343 | None:intergenic | 25.0% |
| ! | GTTACATGCACATATAATAT+AGG | + | chr1_2:71456443-71456462 | None:intergenic | 25.0% |
| ! | TAATATCCCATTAATAATCG+TGG | + | chr1_2:71456525-71456544 | None:intergenic | 25.0% |
| ! | AGGTTCGTAAACGAATTTTT+AGG | + | chr1_2:71450578-71450597 | None:intergenic | 30.0% |
| GAAAATTTGGGGGAAATAAA+GGG | + | chr1_2:71450672-71450691 | None:intergenic | 30.0% | |
| TGAAAATTTGGGGGAAATAA+AGG | + | chr1_2:71450673-71450692 | None:intergenic | 30.0% | |
| TGTTAGGGTTTGAAAATTTG+GGG | + | chr1_2:71450683-71450702 | None:intergenic | 30.0% | |
| GATGTTAGGGTTTGAAAATT+TGG | + | chr1_2:71450685-71450704 | None:intergenic | 30.0% | |
| GAAAGAAGACGAAAATTGAT+TGG | + | chr1_2:71450746-71450765 | None:intergenic | 30.0% | |
| ! | ATTTTCGTCTTCTTTCTCTT+CGG | - | chr1_2:71450750-71450769 | Msa0089790:three_prime_UTR | 30.0% |
| TTTGGTATATGATAAGAGTC+TGG | - | chr1_2:71451051-71451070 | Msa0089790:intron | 30.0% | |
| TAGTTGTAAGAATGAATTGG+TGG | - | chr1_2:71451156-71451175 | Msa0089790:intron | 30.0% | |
| ! | AGCTGCATTAAAATTTTGCA+GGG | + | chr1_2:71451322-71451341 | None:intergenic | 30.0% |
| ! | ATTTAGTGTTTGCTTGGTTT+TGG | - | chr1_2:71451404-71451423 | Msa0089790:CDS | 30.0% |
| ! | TGTATGTTTGATTCCACTTT+TGG | + | chr1_2:71451639-71451658 | None:intergenic | 30.0% |
| CTTATTTAGGTAGTACGTAA+TGG | + | chr1_2:71452280-71452299 | None:intergenic | 30.0% | |
| ACACTCCCAATGAAATAAAA+AGG | + | chr1_2:71452554-71452573 | None:intergenic | 30.0% | |
| TACTATTGTGGTCAAATAAG+TGG | - | chr1_2:71452648-71452667 | Msa0089790:intron | 30.0% | |
| TTATACGCGTATGGTATTAT+AGG | + | chr1_2:71452731-71452750 | None:intergenic | 30.0% | |
| ATAATACCATACGCGTATAA+TGG | - | chr1_2:71452731-71452750 | Msa0089790:intron | 30.0% | |
| TAAAAACCATTATACGCGTA+TGG | + | chr1_2:71452740-71452759 | None:intergenic | 30.0% | |
| CAGAAATCTTATAAGCATCT+TGG | - | chr1_2:71452918-71452937 | Msa0089790:intron | 30.0% | |
| TTATAAGCATCTTGGATGTT+AGG | - | chr1_2:71452926-71452945 | Msa0089790:intron | 30.0% | |
| TATAAGCATCTTGGATGTTA+GGG | - | chr1_2:71452927-71452946 | Msa0089790:intron | 30.0% | |
| TATGATTTAGGTGGTACATA+AGG | - | chr1_2:71453073-71453092 | Msa0089790:intron | 30.0% | |
| TAATGTTATCACTTATCACG+AGG | - | chr1_2:71453257-71453276 | Msa0089790:intron | 30.0% | |
| TCTTCAAATTAGCATGAAGA+TGG | - | chr1_2:71453281-71453300 | Msa0089790:intron | 30.0% | |
| ! | CTTTTCAATCATGTTTTGCT+GGG | + | chr1_2:71453307-71453326 | None:intergenic | 30.0% |
| !!! | TGGGTTTTTTTTCTTTCAGT+TGG | + | chr1_2:71453497-71453516 | None:intergenic | 30.0% |
| TAAGAAAGGTTGAATCTGAT+AGG | - | chr1_2:71453597-71453616 | Msa0089790:intron | 30.0% | |
| AAGGTTAAACTTACAGTATC+CGG | - | chr1_2:71453691-71453710 | Msa0089790:intron | 30.0% | |
| TAGATCTTTACAATAGGGTA+GGG | - | chr1_2:71454260-71454279 | Msa0089790:CDS | 30.0% | |
| TTACATGGTTAAAGTAAGGA+AGG | - | chr1_2:71454359-71454378 | Msa0089790:intron | 30.0% | |
| !! | TTCCTAGTCTTAATCATATC+AGG | - | chr1_2:71454477-71454496 | Msa0089790:intron | 30.0% |
| TTCCTGATATGATTAAGACT+AGG | + | chr1_2:71454482-71454501 | None:intergenic | 30.0% | |
| GTCATAAACCTATAATGAAG+AGG | - | chr1_2:71454691-71454710 | Msa0089790:CDS | 30.0% | |
| ATTAAAGTTTCTCTTAGAGG+GGG | + | chr1_2:71454728-71454747 | None:intergenic | 30.0% | |
| AATTAGTAAGGTCTCAAAGT+AGG | - | chr1_2:71454745-71454764 | Msa0089790:intron | 30.0% | |
| ACAATTTGTCAAGTGTATGA+GGG | - | chr1_2:71454876-71454895 | Msa0089790:CDS | 30.0% | |
| TTACTTAATGTAGAAGGACA+AGG | + | chr1_2:71454935-71454954 | None:intergenic | 30.0% | |
| TTGACGTTACTTAATGTAGA+AGG | + | chr1_2:71454941-71454960 | None:intergenic | 30.0% | |
| TGAATATTATTGAGCAAACC+TGG | + | chr1_2:71455280-71455299 | None:intergenic | 30.0% | |
| ACATTAAGTATAGTGTGTAG+TGG | - | chr1_2:71455484-71455503 | Msa0089790:intron | 30.0% | |
| !!! | ATTTTATTTTGTGATGCAGG+TGG | - | chr1_2:71455768-71455787 | Msa0089790:intron | 30.0% |
| !! | CTTTTCGTTTAAGCTGTTTT+AGG | - | chr1_2:71456015-71456034 | Msa0089790:intron | 30.0% |
| ! | TGATGAAATATTTGCTGACA+TGG | - | chr1_2:71456179-71456198 | Msa0089790:intron | 30.0% |
| GAAATACCACATCTATTACT+AGG | + | chr1_2:71456325-71456344 | None:intergenic | 30.0% | |
| GTAATAGATGTGGTATTTCT+AGG | - | chr1_2:71456326-71456345 | Msa0089790:five_prime_UTR | 30.0% | |
| TACAGATTCCAAATCTACTA+TGG | + | chr1_2:71456420-71456439 | None:intergenic | 30.0% | |
| ACAAAAACGTACTTATTCGT+TGG | - | chr1_2:71456497-71456516 | Msa0089790:five_prime_UTR | 30.0% | |
| AAAATGTTCTAGCGGAAATC+TGG | - | chr1_2:71450534-71450553 | Msa0089790:three_prime_UTR | 35.0% | |
| ATTTAGATCAGATCGTTACG+TGG | + | chr1_2:71450612-71450631 | None:intergenic | 35.0% | |
| GAAATAAAGGGATTAGGAAG+CGG | + | chr1_2:71450660-71450679 | None:intergenic | 35.0% | |
| GTTAGGGTTTGAAAATTTGG+GGG | + | chr1_2:71450682-71450701 | None:intergenic | 35.0% | |
| AACGTAGATTTGCGATGTTA+GGG | + | chr1_2:71450698-71450717 | None:intergenic | 35.0% | |
| AAACGTAGATTTGCGATGTT+AGG | + | chr1_2:71450699-71450718 | None:intergenic | 35.0% | |
| AGTTTCAATTACCGATCCAA+AGG | + | chr1_2:71450987-71451006 | None:intergenic | 35.0% | |
| CTCTATCAGTTTGAGTAATG+AGG | - | chr1_2:71451279-71451298 | Msa0089790:CDS | 35.0% | |
| ! | CAGCTGCATTAAAATTTTGC+AGG | + | chr1_2:71451323-71451342 | None:intergenic | 35.0% |
| !! | AATTTTAATGCAGCTGAAGC+TGG | - | chr1_2:71451327-71451346 | Msa0089790:intron | 35.0% |
| AACCTGATTTAGTGTTTGCT+TGG | - | chr1_2:71451398-71451417 | Msa0089790:CDS | 35.0% | |
| AACCAAGCAAACACTAAATC+AGG | + | chr1_2:71451403-71451422 | None:intergenic | 35.0% | |
| !! | ATGTTTGATTCCACTTTTGG+AGG | + | chr1_2:71451636-71451655 | None:intergenic | 35.0% |
| ATCTGGATACATGTGATAGA+GGG | + | chr1_2:71452396-71452415 | None:intergenic | 35.0% | |
| AATCTGGATACATGTGATAG+AGG | + | chr1_2:71452397-71452416 | None:intergenic | 35.0% | |
| TGTATCCAGATTATGACTTC+AGG | - | chr1_2:71452405-71452424 | Msa0089790:intron | 35.0% | |
| CCACAATAGTATTTGGGAAA+TGG | + | chr1_2:71452639-71452658 | None:intergenic | 35.0% | |
| CCATTTCCCAAATACTATTG+TGG | - | chr1_2:71452636-71452655 | Msa0089790:intron | 35.0% | |
| ATGATTCCTCTGTGAAAAAC+TGG | + | chr1_2:71452779-71452798 | None:intergenic | 35.0% | |
| ! | AGTTTTTCACAGAGGAATCA+TGG | - | chr1_2:71452778-71452797 | Msa0089790:intron | 35.0% |
| ! | GTTTTTCACAGAGGAATCAT+GGG | - | chr1_2:71452779-71452798 | Msa0089790:intron | 35.0% |
| GTTTAATAGTAGCACCTTTG+AGG | + | chr1_2:71452844-71452863 | None:intergenic | 35.0% | |
| ! | GTATTACCTCTTAGAGTACT+AGG | - | chr1_2:71453005-71453024 | Msa0089790:intron | 35.0% |
| ! | TTAGAGTACTAGGCATTGTT+TGG | - | chr1_2:71453015-71453034 | Msa0089790:intron | 35.0% |
| GTACTTTGTATTCTGTACCA+TGG | + | chr1_2:71453128-71453147 | None:intergenic | 35.0% | |
| ! | CCTTTTCAATCATGTTTTGC+TGG | + | chr1_2:71453308-71453327 | None:intergenic | 35.0% |
| CCAGCAAAACATGATTGAAA+AGG | - | chr1_2:71453305-71453324 | Msa0089790:intron | 35.0% | |
| ! | TAGATATATCTAGAGCTCCT+GGG | + | chr1_2:71453334-71453353 | None:intergenic | 35.0% |
| ! | TTAGATATATCTAGAGCTCC+TGG | + | chr1_2:71453335-71453354 | None:intergenic | 35.0% |
| !! | AGGAGCTCTAGATATATCTA+AGG | - | chr1_2:71453334-71453353 | Msa0089790:intron | 35.0% |
| !! | GGAGCTCTAGATATATCTAA+GGG | - | chr1_2:71453335-71453354 | Msa0089790:intron | 35.0% |
| AGATAGCTTGAATCATCATC+AGG | - | chr1_2:71453381-71453400 | Msa0089790:intron | 35.0% | |
| !!! | TTTTTTCTTTCAGTTGGCTC+AGG | + | chr1_2:71453491-71453510 | None:intergenic | 35.0% |
| AGGTTAAACTTACAGTATCC+GGG | - | chr1_2:71453692-71453711 | Msa0089790:intron | 35.0% | |
| !!! | TGGGTTTTTTACACTAGAGA+AGG | - | chr1_2:71453765-71453784 | Msa0089790:intron | 35.0% |
| TTGCTTGATGTGAAAGCAAT+AGG | - | chr1_2:71453817-71453836 | Msa0089790:intron | 35.0% | |
| TTTAAGAAGAGAGAAATGGG+AGG | - | chr1_2:71453938-71453957 | Msa0089790:intron | 35.0% | |
| TTAAGAAGAGAGAAATGGGA+GGG | - | chr1_2:71453939-71453958 | Msa0089790:intron | 35.0% | |
| !! | GAGGGACATTTTGATGATTA+GGG | - | chr1_2:71453957-71453976 | Msa0089790:intron | 35.0% |
| !! | GGTTCAATAAGTCTGCTTTT+AGG | + | chr1_2:71454012-71454031 | None:intergenic | 35.0% |
| AAAAGCAGACTTATTGAACC+TGG | - | chr1_2:71454012-71454031 | Msa0089790:intron | 35.0% | |
| TCTTTGTAGTCACTTCTCAT+AGG | + | chr1_2:71454070-71454089 | None:intergenic | 35.0% | |
| GCTAGCAACATCTAACAAAA+TGG | - | chr1_2:71454150-71454169 | Msa0089790:intron | 35.0% | |
| AGTACAAAGTCCAACAAGTT+TGG | - | chr1_2:71454196-71454215 | Msa0089790:intron | 35.0% | |
| GTACAAAGTCCAACAAGTTT+GGG | - | chr1_2:71454197-71454216 | Msa0089790:intron | 35.0% | |
| ! | TTATTTTCTTCCAATTCCCG+TGG | + | chr1_2:71454227-71454246 | None:intergenic | 35.0% |
| CTAGATCTTTACAATAGGGT+AGG | - | chr1_2:71454259-71454278 | Msa0089790:CDS | 35.0% | |
| ! | GAAATAGTGATAGTGTAGCT+AGG | - | chr1_2:71454294-71454313 | Msa0089790:CDS | 35.0% |
| ATAGTGTAGCTAGGTTATTG+AGG | - | chr1_2:71454303-71454322 | Msa0089790:CDS | 35.0% | |
| !! | TGACTTGGTATAAGAACAAC+AGG | + | chr1_2:71454675-71454694 | None:intergenic | 35.0% |
| TTAAAGTTTCTCTTAGAGGG+GGG | + | chr1_2:71454727-71454746 | None:intergenic | 35.0% | |
| ACACATAGCTGAACTTACTA+GGG | + | chr1_2:71454803-71454822 | None:intergenic | 35.0% | |
| AACACATAGCTGAACTTACT+AGG | + | chr1_2:71454804-71454823 | None:intergenic | 35.0% | |
| CACAATTTGTCAAGTGTATG+AGG | - | chr1_2:71454875-71454894 | Msa0089790:CDS | 35.0% | |
| TATTATTGAGCAAACCTGGA+TGG | + | chr1_2:71455276-71455295 | None:intergenic | 35.0% | |
| TCAAGAACAACTATGTCCTT+AGG | - | chr1_2:71455357-71455376 | Msa0089790:intron | 35.0% | |
| GGTGCAAAAATTGTATTGCA+TGG | - | chr1_2:71455544-71455563 | Msa0089790:intron | 35.0% | |
| ! | AGTTTTGCTACTGCGATTTA+AGG | - | chr1_2:71455586-71455605 | Msa0089790:intron | 35.0% |
| !! | ATTTAAGGCACCTTTGGTTT+TGG | - | chr1_2:71455601-71455620 | Msa0089790:intron | 35.0% |
| AATGAAACTCACCTCATCAA+CGG | + | chr1_2:71455697-71455716 | None:intergenic | 35.0% | |
| TGGTTATTTACCTGATTCTG+AGG | - | chr1_2:71455816-71455835 | Msa0089790:CDS | 35.0% | |
| AGCTGCAGAAAACAAAAAGA+TGG | + | chr1_2:71455947-71455966 | None:intergenic | 35.0% | |
| !!! | ATCTTTTTGTTTTCTGCAGC+TGG | - | chr1_2:71455946-71455965 | Msa0089790:CDS | 35.0% |
| ! | TGTTTGAACAATGCTGTTTG+TGG | - | chr1_2:71456102-71456121 | Msa0089790:CDS | 35.0% |
| CTACAACATGCATACATGAA+GGG | + | chr1_2:71456365-71456384 | None:intergenic | 35.0% | |
| TCTACAACATGCATACATGA+AGG | + | chr1_2:71456366-71456385 | None:intergenic | 35.0% | |
| TTGAGTGTCCATAGTAGATT+TGG | - | chr1_2:71456409-71456428 | Msa0089790:five_prime_UTR | 35.0% | |
| GCATGTAACTAATCTTAGTC+AGG | - | chr1_2:71456454-71456473 | Msa0089790:five_prime_UTR | 35.0% | |
| TTGGAGCCACGATTATTAAT+GGG | - | chr1_2:71456516-71456535 | Msa0089790:five_prime_UTR | 35.0% | |
| TTGGGGGAAATAAAGGGATT+AGG | + | chr1_2:71450666-71450685 | None:intergenic | 40.0% | |
| TTGAATGTGCTCCTTTGGAT+CGG | - | chr1_2:71450973-71450992 | Msa0089790:intron | 40.0% | |
| ! | TTTTGCAGGGATGCGAAATT+CGG | + | chr1_2:71451309-71451328 | None:intergenic | 40.0% |
| AATCTTGACTCCTCCAAAAG+TGG | - | chr1_2:71451623-71451642 | Msa0089790:intron | 40.0% | |
| CATGCCATATTACATGCCTT+TGG | - | chr1_2:71451931-71451950 | Msa0089790:intron | 40.0% | |
| ! | AGTGCCAAAGGCATGTAATA+TGG | + | chr1_2:71451938-71451957 | None:intergenic | 40.0% |
| CTAGGTAAACCAATGTCTTC+CGG | + | chr1_2:71452367-71452386 | None:intergenic | 40.0% | |
| AGGTACCTGAAGTCATAATC+TGG | + | chr1_2:71452413-71452432 | None:intergenic | 40.0% | |
| !! | TCATTGGGAGTGTTGTCAAA+AGG | - | chr1_2:71452561-71452580 | Msa0089790:intron | 40.0% |
| !! | CTTTGAGGCTTCAAACATGT+AGG | + | chr1_2:71452829-71452848 | None:intergenic | 40.0% |
| ! | CTACATGTTTGAAGCCTCAA+AGG | - | chr1_2:71452827-71452846 | Msa0089790:intron | 40.0% |
| ATGTTAGGGCATAAGATGCT+TGG | - | chr1_2:71452941-71452960 | Msa0089790:intron | 40.0% | |
| TGTTAGGGCATAAGATGCTT+GGG | - | chr1_2:71452942-71452961 | Msa0089790:intron | 40.0% | |
| ACAATGCCTAGTACTCTAAG+AGG | + | chr1_2:71453014-71453033 | None:intergenic | 40.0% | |
| TGTTACATGACAGAGTAGAG+TGG | - | chr1_2:71453422-71453441 | Msa0089790:intron | 40.0% | |
| TGATCAAGGGGAACTAAGAA+AGG | - | chr1_2:71453583-71453602 | Msa0089790:intron | 40.0% | |
| GAATCTGATAGGAGACACAA+AGG | - | chr1_2:71453608-71453627 | Msa0089790:intron | 40.0% | |
| AGACACAAAGGAAAGACAGT+GGG | - | chr1_2:71453620-71453639 | Msa0089790:intron | 40.0% | |
| AAAAACCCACCAAGTGACTA+AGG | + | chr1_2:71453754-71453773 | None:intergenic | 40.0% | |
| ACGACACAATCCCAAATTAG+CGG | - | chr1_2:71453788-71453807 | Msa0089790:intron | 40.0% | |
| CAATAGGATAGAGAATCCGA+TGG | - | chr1_2:71453833-71453852 | Msa0089790:intron | 40.0% | |
| !! | GGAGGGACATTTTGATGATT+AGG | - | chr1_2:71453956-71453975 | Msa0089790:intron | 40.0% |
| !! | GGACATTTTGATGATTAGGG+TGG | - | chr1_2:71453960-71453979 | Msa0089790:intron | 40.0% |
| ! | GATGCAGACATTTTACTGGA+GGG | - | chr1_2:71453982-71454001 | Msa0089790:intron | 40.0% |
| AGACTTATTGAACCTGGAAG+AGG | - | chr1_2:71454018-71454037 | Msa0089790:intron | 40.0% | |
| GACTTATTGAACCTGGAAGA+GGG | - | chr1_2:71454019-71454038 | Msa0089790:intron | 40.0% | |
| TGTAGCTAGGTTATTGAGGA+TGG | - | chr1_2:71454307-71454326 | Msa0089790:CDS | 40.0% | |
| TCTCAAAGTAGGACAAGTGA+AGG | - | chr1_2:71454756-71454775 | Msa0089790:intron | 40.0% | |
| AAAGTAGGACAAGTGAAGGT+TGG | - | chr1_2:71454760-71454779 | Msa0089790:intron | 40.0% | |
| AAGTAGGACAAGTGAAGGTT+GGG | - | chr1_2:71454761-71454780 | Msa0089790:intron | 40.0% | |
| TTGTCAAGTGTATGAGGGTT+AGG | - | chr1_2:71454881-71454900 | Msa0089790:CDS | 40.0% | |
| GATGATGAACATTCTACCTG+TGG | - | chr1_2:71454903-71454922 | Msa0089790:intron | 40.0% | |
| AAGTAACGTCAATGCCTCAA+TGG | - | chr1_2:71454949-71454968 | Msa0089790:intron | 40.0% | |
| AAGTTCCATTGTCACCATTG+AGG | + | chr1_2:71454966-71454985 | None:intergenic | 40.0% | |
| AGCTAAGATGTTCATTCTGG+GGG | + | chr1_2:71455422-71455441 | None:intergenic | 40.0% | |
| CAGCTAAGATGTTCATTCTG+GGG | + | chr1_2:71455423-71455442 | None:intergenic | 40.0% | |
| CCAGCTAAGATGTTCATTCT+GGG | + | chr1_2:71455424-71455443 | None:intergenic | 40.0% | |
| TCCAGCTAAGATGTTCATTC+TGG | + | chr1_2:71455425-71455444 | None:intergenic | 40.0% | |
| ATCTTAGCTGGATAGCAGTA+GGG | - | chr1_2:71455433-71455452 | Msa0089790:intron | 40.0% | |
| GACAAGTCATCCAAAACCAA+AGG | + | chr1_2:71455614-71455633 | None:intergenic | 40.0% | |
| GTGATATCTAGAGACTAGAG+AGG | - | chr1_2:71455733-71455752 | Msa0089790:intron | 40.0% | |
| GTTGGAGCCACGATTATTAA+TGG | - | chr1_2:71456515-71456534 | Msa0089790:five_prime_UTR | 40.0% | |
| GTTACGTGGAAGATAGAGAG+AGG | + | chr1_2:71450598-71450617 | None:intergenic | 45.0% | |
| GGATTAGGAAGCGGTGAAAA+TGG | + | chr1_2:71450651-71450670 | None:intergenic | 45.0% | |
| GTTCCTTGAATGTGCTCCTT+TGG | - | chr1_2:71450968-71450987 | Msa0089790:intron | 45.0% | |
| ! | GATCCAAAGGAGCACATTCA+AGG | + | chr1_2:71450974-71450993 | None:intergenic | 45.0% |
| CTGGGAGAACGTACTATCAA+AGG | - | chr1_2:71451118-71451137 | Msa0089790:intron | 45.0% | |
| TAATGCAGCTGAAGCTGGTT+TGG | - | chr1_2:71451332-71451351 | Msa0089790:intron | 45.0% | |
| CATGCCATATGACATGCCTT+TGG | - | chr1_2:71451780-71451799 | Msa0089790:intron | 45.0% | |
| ! | AGTGCCAAAGGCATGTCATA+TGG | + | chr1_2:71451787-71451806 | None:intergenic | 45.0% |
| ! | TTTTTCCAGCCGGAAGACAT+TGG | - | chr1_2:71452355-71452374 | Msa0089790:intron | 45.0% |
| TGTGATAGAGGGCAAGAACT+AGG | + | chr1_2:71452385-71452404 | None:intergenic | 45.0% | |
| ! | AGCTCACCAGTTTTTCACAG+AGG | - | chr1_2:71452770-71452789 | Msa0089790:intron | 45.0% |
| GTTAGGGCATAAGATGCTTG+GGG | - | chr1_2:71452943-71452962 | Msa0089790:intron | 45.0% | |
| CATGATTGAAAAGGCAACCC+AGG | - | chr1_2:71453314-71453333 | Msa0089790:intron | 45.0% | |
| !! | TTGGTTTGGACTCGTCAGTT+GGG | + | chr1_2:71453516-71453535 | None:intergenic | 45.0% |
| !! | TTTGGTTTGGACTCGTCAGT+TGG | + | chr1_2:71453517-71453536 | None:intergenic | 45.0% |
| TGACGAGTCCAAACCAAACA+TGG | - | chr1_2:71453519-71453538 | Msa0089790:intron | 45.0% | |
| GCACTTTGCCATGTTTGGTT+TGG | + | chr1_2:71453530-71453549 | None:intergenic | 45.0% | |
| GAGACACAAAGGAAAGACAG+TGG | - | chr1_2:71453619-71453638 | Msa0089790:intron | 45.0% | |
| CACACTTTCTCACATGACGA+AGG | - | chr1_2:71453672-71453691 | Msa0089790:intron | 45.0% | |
| CATCACCTTAGTCACTTGGT+GGG | - | chr1_2:71453746-71453765 | Msa0089790:intron | 45.0% | |
| GCAATGTCTGCCGCTAATTT+GGG | + | chr1_2:71453801-71453820 | None:intergenic | 45.0% | |
| AGCAATGTCTGCCGCTAATT+TGG | + | chr1_2:71453802-71453821 | None:intergenic | 45.0% | |
| ! | GGTGGATGCAGACATTTTAC+TGG | - | chr1_2:71453978-71453997 | Msa0089790:intron | 45.0% |
| ! | GGATGCAGACATTTTACTGG+AGG | - | chr1_2:71453981-71454000 | Msa0089790:intron | 45.0% |
| ! | ATTTTGTAGCACCCTCTTCC+AGG | + | chr1_2:71454033-71454052 | None:intergenic | 45.0% |
| GATGGATGAGTCCACTGTAA+TGG | - | chr1_2:71454128-71454147 | Msa0089790:intron | 45.0% | |
| GATGTTGCTAGCCATTACAG+TGG | + | chr1_2:71454142-71454161 | None:intergenic | 45.0% | |
| TATGTTGTGTCCGTGACATC+TGG | - | chr1_2:71454503-71454522 | Msa0089790:intron | 45.0% | |
| GATGAACATTCTACCTGTGG+AGG | - | chr1_2:71454906-71454925 | Msa0089790:intron | 45.0% | |
| CAATGCCTCAATGGTGACAA+TGG | - | chr1_2:71454958-71454977 | Msa0089790:intron | 45.0% | |
| TTACCAAACTGGCCAGATTG+TGG | + | chr1_2:71455253-71455272 | None:intergenic | 45.0% | |
| AACCTGGATGGTTACCAAAC+TGG | + | chr1_2:71455264-71455283 | None:intergenic | 45.0% | |
| CTGACAGTACTATACTGCTC+TGG | + | chr1_2:71455332-71455351 | None:intergenic | 45.0% | |
| GCGAGAATCTTAGATGCCTA+AGG | + | chr1_2:71455376-71455395 | None:intergenic | 45.0% | |
| ! | CATCTAAGATTCTCGCGAAC+TGG | - | chr1_2:71455380-71455399 | Msa0089790:intron | 45.0% |
| AGATTCTCGCGAACTGGAAA+AGG | - | chr1_2:71455386-71455405 | Msa0089790:intron | 45.0% | |
| CCCAGAATGAACATCTTAGC+TGG | - | chr1_2:71455421-71455440 | Msa0089790:intron | 45.0% | |
| CATCTTAGCTGGATAGCAGT+AGG | - | chr1_2:71455432-71455451 | Msa0089790:intron | 45.0% | |
| ! | ACTGCGATTTAAGGCACCTT+TGG | - | chr1_2:71455595-71455614 | Msa0089790:intron | 45.0% |
| ! | TTGGATGACTTGTCTACTGC+AGG | - | chr1_2:71455620-71455639 | Msa0089790:intron | 45.0% |
| ! | TGACTTGTCTACTGCAGGAA+TGG | - | chr1_2:71455625-71455644 | Msa0089790:intron | 45.0% |
| GACTTGTCTACTGCAGGAAT+GGG | - | chr1_2:71455626-71455645 | Msa0089790:intron | 45.0% | |
| !! | AGGAATGGGCTGAAACCTTT+GGG | - | chr1_2:71455640-71455659 | Msa0089790:intron | 45.0% |
| GGCAGTAACTTGATTGCTGA+TGG | - | chr1_2:71456123-71456142 | Msa0089790:exon | 45.0% | |
| GAAACTGCACATTGGAGGAT+GGG | + | chr1_2:71456250-71456269 | None:intergenic | 45.0% | |
| AGAAACTGCACATTGGAGGA+TGG | + | chr1_2:71456251-71456270 | None:intergenic | 45.0% | |
| CTACAGAAACTGCACATTGG+AGG | + | chr1_2:71456255-71456274 | None:intergenic | 45.0% | |
| GCACTACAGAAACTGCACAT+TGG | + | chr1_2:71456258-71456277 | None:intergenic | 45.0% | |
| !!! | AGTTTTTTTTTATTATTATA+TGG | + | chr1_2:71452464-71452483 | None:intergenic | 5.0% |
| CATGCCACATGACATGCCTT+TGG | - | chr1_2:71452087-71452106 | Msa0089790:intron | 50.0% | |
| ! | AGTGCCAAAGGCATGTCATG+TGG | + | chr1_2:71452094-71452113 | None:intergenic | 50.0% |
| TGACAATGACTCTCCCTCAC+CGG | - | chr1_2:71452204-71452223 | Msa0089790:intron | 50.0% | |
| GATAAGGAGTCAACCGGTGA+GGG | + | chr1_2:71452220-71452239 | None:intergenic | 50.0% | |
| GGTGAGGATAAGGAGTCAAC+CGG | + | chr1_2:71452226-71452245 | None:intergenic | 50.0% | |
| ! | GGTTGACTCCTTATCCTCAC+CGG | - | chr1_2:71452225-71452244 | Msa0089790:intron | 50.0% |
| TGATAAGGAGTCAACCGGTG+AGG | + | chr1_2:71452242-71452261 | None:intergenic | 50.0% | |
| CTGGCTGATAAGGAGTCAAC+CGG | + | chr1_2:71452247-71452266 | None:intergenic | 50.0% | |
| ACTCCTTATCAGCCAGAACC+AGG | - | chr1_2:71452251-71452270 | Msa0089790:intron | 50.0% | |
| !! | CTACCTGGTTCTGGCTGATA+AGG | + | chr1_2:71452257-71452276 | None:intergenic | 50.0% |
| ACGTAATGGCTACCTGGTTC+TGG | + | chr1_2:71452266-71452285 | None:intergenic | 50.0% | |
| GGTAGTACGTAATGGCTACC+TGG | + | chr1_2:71452272-71452291 | None:intergenic | 50.0% | |
| GTAAACCAATGTCTTCCGGC+TGG | + | chr1_2:71452363-71452382 | None:intergenic | 50.0% | |
| TGTCAGCTTAGACTGCGACA+TGG | - | chr1_2:71452512-71452531 | Msa0089790:intron | 50.0% | |
| ! | ATCTAAGGGACGAGTGTCGT+TGG | - | chr1_2:71453349-71453368 | Msa0089790:intron | 50.0% |
| CTTGGGAAGGGGATGATCAA+GGG | - | chr1_2:71453570-71453589 | Msa0089790:intron | 50.0% | |
| TTGGGAAGGGGATGATCAAG+GGG | - | chr1_2:71453571-71453590 | Msa0089790:intron | 50.0% | |
| CACAAAGGAAAGACAGTGGG+AGG | - | chr1_2:71453623-71453642 | Msa0089790:intron | 50.0% | |
| AGCAACGGTATGATGGTTCC+CGG | + | chr1_2:71453713-71453732 | None:intergenic | 50.0% | |
| ACGCCATCACCTTAGTCACT+TGG | - | chr1_2:71453742-71453761 | Msa0089790:intron | 50.0% | |
| CCACCAAGTGACTAAGGTGA+TGG | + | chr1_2:71453748-71453767 | None:intergenic | 50.0% | |
| CCATCACCTTAGTCACTTGG+TGG | - | chr1_2:71453745-71453764 | Msa0089790:intron | 50.0% | |
| CTTCTCATAGGTGCACTACG+TGG | + | chr1_2:71454058-71454077 | None:intergenic | 50.0% | |
| CAACAAGTTTGGGAGAGCCA+CGG | - | chr1_2:71454207-71454226 | Msa0089790:intron | 50.0% | |
| AACAAGTTTGGGAGAGCCAC+GGG | - | chr1_2:71454208-71454227 | Msa0089790:intron | 50.0% | |
| AGATTGGGCTCCAGATGTCA+CGG | + | chr1_2:71454516-71454535 | None:intergenic | 50.0% | |
| GAACGGTGCAAAATAGCGAG+TGG | - | chr1_2:71455094-71455113 | Msa0089790:intron | 50.0% | |
| TAGCGAGTGGAGGTAAGTGA+CGG | - | chr1_2:71455107-71455126 | Msa0089790:intron | 50.0% | |
| AAACTGGCCAGATTGTGGTC+GGG | + | chr1_2:71455248-71455267 | None:intergenic | 50.0% | |
| CAAACTGGCCAGATTGTGGT+CGG | + | chr1_2:71455249-71455268 | None:intergenic | 50.0% | |
| ! | TGGATAGCAGTAGGGCACTA+TGG | - | chr1_2:71455441-71455460 | Msa0089790:intron | 50.0% |
| !! | CAGGAATGGGCTGAAACCTT+TGG | - | chr1_2:71455639-71455658 | Msa0089790:intron | 50.0% |
| !! | GGAATGGGCTGAAACCTTTG+GGG | - | chr1_2:71455641-71455660 | Msa0089790:intron | 50.0% |
| !! | GAATGGGCTGAAACCTTTGG+GGG | - | chr1_2:71455642-71455661 | Msa0089790:intron | 50.0% |
| ! | TCTGCTGGATGCCTTGTTCA+AGG | - | chr1_2:71455671-71455690 | Msa0089790:intron | 50.0% |
| CTCATCAACGGCCTTGAACA+AGG | + | chr1_2:71455685-71455704 | None:intergenic | 50.0% | |
| CTTGTTCAAGGCCGTTGATG+AGG | - | chr1_2:71455683-71455702 | Msa0089790:intron | 50.0% | |
| AACGGATCTGCCTCAGAATC+AGG | + | chr1_2:71455829-71455848 | None:intergenic | 50.0% | |
| ATGGCTCCTCTCTCTGGTAA+CGG | + | chr1_2:71455847-71455866 | None:intergenic | 50.0% | |
| ACATACATGGCTCCTCTCTC+TGG | + | chr1_2:71455853-71455872 | None:intergenic | 50.0% | |
| TGGCGCCCTAGTAATAGATG+TGG | - | chr1_2:71456316-71456335 | Msa0089790:intron | 50.0% | |
| GGATAAGGAGTCAACCGGTG+AGG | + | chr1_2:71452221-71452240 | None:intergenic | 55.0% | |
| GGAGTCAACCGGTGAGGATA+AGG | + | chr1_2:71452236-71452255 | None:intergenic | 55.0% | |
| ! | TAAGGGACGAGTGTCGTTGG+AGG | - | chr1_2:71453352-71453371 | Msa0089790:intron | 55.0% |
| GGGCTGCACTTTGCCATGTT+TGG | + | chr1_2:71453535-71453554 | None:intergenic | 55.0% | |
| ACATGGCAAAGTGCAGCCCA+TGG | - | chr1_2:71453536-71453555 | Msa0089790:intron | 55.0% | |
| CATGGCAAAGTGCAGCCCAT+GGG | - | chr1_2:71453537-71453556 | Msa0089790:intron | 55.0% | |
| CCAAGCTGCTTGGTTCCCAT+GGG | + | chr1_2:71453555-71453574 | None:intergenic | 55.0% | |
| CCATGGGAACCAAGCAGCTT+GGG | - | chr1_2:71453553-71453572 | Msa0089790:intron | 55.0% | |
| GGAACCAAGCAGCTTGGGAA+GGG | - | chr1_2:71453558-71453577 | Msa0089790:intron | 55.0% | |
| GAACCAAGCAGCTTGGGAAG+GGG | - | chr1_2:71453559-71453578 | Msa0089790:intron | 55.0% | |
| GCTTGGGAAGGGGATGATCA+AGG | - | chr1_2:71453569-71453588 | Msa0089790:intron | 55.0% | |
| GTGTGTGATGCGCACTTCCT+TGG | + | chr1_2:71453657-71453676 | None:intergenic | 55.0% | |
| CAGCAGGAGCAACGGTATGA+TGG | + | chr1_2:71453720-71453739 | None:intergenic | 55.0% | |
| ! | TAAGGTGATGGCGTTGCAGC+AGG | + | chr1_2:71453736-71453755 | None:intergenic | 55.0% |
| CGTGGCTCTCCCAAACTTGT+TGG | + | chr1_2:71454209-71454228 | None:intergenic | 55.0% | |
| TTTGGGAGAGCCACGGGAAT+TGG | - | chr1_2:71454214-71454233 | Msa0089790:intron | 55.0% | |
| AAGGACAAGGAGTCCTCCAC+AGG | + | chr1_2:71454922-71454941 | None:intergenic | 55.0% | |
| CGGTGCAAAATAGCGAGTGG+AGG | - | chr1_2:71455097-71455116 | Msa0089790:intron | 55.0% | |
| ATCAGTCCCCGACCACAATC+TGG | - | chr1_2:71455238-71455257 | Msa0089790:intron | 55.0% | |
| AACTGGCCAGATTGTGGTCG+GGG | + | chr1_2:71455247-71455266 | None:intergenic | 55.0% | |
| CGACCACAATCTGGCCAGTT+TGG | - | chr1_2:71455247-71455266 | Msa0089790:intron | 55.0% | |
| ! | GGCCAGTTTGGTAACCATCC+AGG | - | chr1_2:71455259-71455278 | Msa0089790:intron | 55.0% |
| CAGCAGAGAAACACCCCCAA+AGG | + | chr1_2:71455658-71455677 | None:intergenic | 55.0% | |
| !! | CTTTGGGGGTGTTTCTCTGC+TGG | - | chr1_2:71455656-71455675 | Msa0089790:intron | 55.0% |
| GCAGATCCGTTACCAGAGAG+AGG | - | chr1_2:71455838-71455857 | Msa0089790:intron | 55.0% | |
| CACATTGGAGGATGGGTGTC+TGG | + | chr1_2:71456243-71456262 | None:intergenic | 55.0% | |
| CCCATGGGAACCAAGCAGCT+TGG | - | chr1_2:71453552-71453571 | Msa0089790:intron | 60.0% | |
| CCCAAGCTGCTTGGTTCCCA+TGG | + | chr1_2:71453556-71453575 | None:intergenic | 60.0% | |
| GGGAACCAAGCAGCTTGGGA+AGG | - | chr1_2:71453557-71453576 | Msa0089790:intron | 60.0% | |
| CATCCCCTTCCCAAGCTGCT+TGG | + | chr1_2:71453565-71453584 | None:intergenic | 60.0% | |
| TGCGCACTTCCTTGGCACTG+TGG | + | chr1_2:71453649-71453668 | None:intergenic | 60.0% | |
| TGGCGTTGCAGCAGGAGCAA+CGG | + | chr1_2:71453728-71453747 | None:intergenic | 60.0% | |
| AGTGGGAGGCCACAGTGCCA+AGG | - | chr1_2:71453637-71453656 | Msa0089790:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 71450526 | 71456562 | 71450526 | ID=Msa0089790;Name=Msa0089790 |
| chr1_2 | mRNA | 71450526 | 71456562 | 71450526 | ID=Msa0089790-mRNA-1;Parent=Msa0089790;Name=Msa0089790-mRNA-1;_AED=0.25;_eAED=0.25;_QI=300|1|1|1|0.9|0.81|11|353|231 |
| chr1_2 | exon | 71450526 | 71450960 | 71450526 | ID=Msa0089790-mRNA-1:exon:24657;Parent=Msa0089790-mRNA-1 |
| chr1_2 | exon | 71451052 | 71451123 | 71451052 | ID=Msa0089790-mRNA-1:exon:24656;Parent=Msa0089790-mRNA-1 |
| chr1_2 | exon | 71451222 | 71451301 | 71451222 | ID=Msa0089790-mRNA-1:exon:24655;Parent=Msa0089790-mRNA-1 |
| chr1_2 | exon | 71451384 | 71451446 | 71451384 | ID=Msa0089790-mRNA-1:exon:24654;Parent=Msa0089790-mRNA-1 |
| chr1_2 | exon | 71454240 | 71454327 | 71454240 | ID=Msa0089790-mRNA-1:exon:24653;Parent=Msa0089790-mRNA-1 |
| chr1_2 | exon | 71454662 | 71454724 | 71454662 | ID=Msa0089790-mRNA-1:exon:24652;Parent=Msa0089790-mRNA-1 |
| chr1_2 | exon | 71454816 | 71454910 | 71454816 | ID=Msa0089790-mRNA-1:exon:24651;Parent=Msa0089790-mRNA-1 |
| chr1_2 | exon | 71455788 | 71455837 | 71455788 | ID=Msa0089790-mRNA-1:exon:24650;Parent=Msa0089790-mRNA-1 |
| chr1_2 | exon | 71455928 | 71455998 | 71455928 | ID=Msa0089790-mRNA-1:exon:24649;Parent=Msa0089790-mRNA-1 |
| chr1_2 | exon | 71456094 | 71456179 | 71456094 | ID=Msa0089790-mRNA-1:exon:24648;Parent=Msa0089790-mRNA-1 |
| chr1_2 | exon | 71456317 | 71456562 | 71456317 | ID=Msa0089790-mRNA-1:exon:24647;Parent=Msa0089790-mRNA-1 |
| chr1_2 | five_prime_UTR | 71456317 | 71456562 | 71456317 | ID=Msa0089790-mRNA-1:five_prime_utr;Parent=Msa0089790-mRNA-1 |
| chr1_2 | five_prime_UTR | 71456126 | 71456179 | 71456126 | ID=Msa0089790-mRNA-1:five_prime_utr;Parent=Msa0089790-mRNA-1 |
| chr1_2 | CDS | 71456094 | 71456125 | 71456094 | ID=Msa0089790-mRNA-1:cds;Parent=Msa0089790-mRNA-1 |
| chr1_2 | CDS | 71455928 | 71455998 | 71455928 | ID=Msa0089790-mRNA-1:cds;Parent=Msa0089790-mRNA-1 |
| chr1_2 | CDS | 71455788 | 71455837 | 71455788 | ID=Msa0089790-mRNA-1:cds;Parent=Msa0089790-mRNA-1 |
| chr1_2 | CDS | 71454816 | 71454910 | 71454816 | ID=Msa0089790-mRNA-1:cds;Parent=Msa0089790-mRNA-1 |
| chr1_2 | CDS | 71454662 | 71454724 | 71454662 | ID=Msa0089790-mRNA-1:cds;Parent=Msa0089790-mRNA-1 |
| chr1_2 | CDS | 71454240 | 71454327 | 71454240 | ID=Msa0089790-mRNA-1:cds;Parent=Msa0089790-mRNA-1 |
| chr1_2 | CDS | 71451384 | 71451446 | 71451384 | ID=Msa0089790-mRNA-1:cds;Parent=Msa0089790-mRNA-1 |
| chr1_2 | CDS | 71451222 | 71451301 | 71451222 | ID=Msa0089790-mRNA-1:cds;Parent=Msa0089790-mRNA-1 |
| chr1_2 | CDS | 71451052 | 71451123 | 71451052 | ID=Msa0089790-mRNA-1:cds;Parent=Msa0089790-mRNA-1 |
| chr1_2 | CDS | 71450879 | 71450960 | 71450879 | ID=Msa0089790-mRNA-1:cds;Parent=Msa0089790-mRNA-1 |
| chr1_2 | three_prime_UTR | 71450526 | 71450878 | 71450526 | ID=Msa0089790-mRNA-1:three_prime_utr;Parent=Msa0089790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
