Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090130 | XP_003592650.1 | 98.249 | 571 | 9 | 1 | 1 | 570 | 1 | 571 | 0.0 | 1170 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090130 | sp|Q9ZPV5|NOC2_ARATH | 68.501 | 527 | 159 | 3 | 49 | 570 | 63 | 587 | 0.0 | 764 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090130 | G7ID95 | 98.249 | 571 | 9 | 1 | 1 | 570 | 1 | 571 | 0.0 | 1170 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0090080 | Msa0090130 | 0.816343 | 5.808012e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090130 | MtrunA17_Chr1g0209711 | 98.249 | 571 | 9 | 1 | 1 | 570 | 1 | 571 | 0.0 | 1170 |
| Msa0090130 | MtrunA17_Chr6g0462181 | 35.106 | 564 | 336 | 7 | 14 | 571 | 102 | 641 | 1.13e-98 | 315 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090130 | AT2G18220.1 | 68.501 | 527 | 159 | 3 | 49 | 570 | 63 | 587 | 0.0 | 764 |
| Msa0090130 | AT3G55510.1 | 33.333 | 507 | 327 | 6 | 72 | 571 | 63 | 565 | 3.93e-93 | 298 |
| Msa0090130 | AT3G55510.2 | 33.676 | 487 | 312 | 6 | 92 | 571 | 8 | 490 | 4.46e-93 | 295 |
Find 117 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGGTGTCTCTTCATTTC+TGG | 0.080261 | 1_2:+72006345 | Msa0090130:intron |
| TGCATAGATGATTGCTTTAA+AGG | 0.165421 | 1_2:+72006443 | Msa0090130:CDS |
| TGCAAATCAATTAAAGAAAA+TGG | 0.219753 | 1_2:+72005516 | Msa0090130:CDS |
| ACCAGTATCTATGCTCCTTT+TGG | 0.248004 | 1_2:+72007200 | Msa0090130:CDS |
| TTGTTGAAGCTTCCTGCTTC+TGG | 0.303506 | 1_2:+72005705 | Msa0090130:CDS |
| TCAGGTGTCTCTTCATTTCT+GGG | 0.315570 | 1_2:+72006346 | Msa0090130:intron |
| GAGTTACTCTGTTGGGTTCA+TGG | 0.318367 | 1_2:+72007473 | Msa0090130:CDS |
| TAAAGTTATAACCACTTCTA+TGG | 0.321812 | 1_2:+72005482 | Msa0090130:CDS |
| AAAATATTCTTCATTGTTGT+TGG | 0.346316 | 1_2:+72005875 | Msa0090130:CDS |
| GTTTCAACAGAAATTGATAA+AGG | 0.352857 | 1_2:+72003472 | Msa0090130:CDS |
| TCTCTTCATTTCTGGGGTAC+TGG | 0.358919 | 1_2:+72006353 | Msa0090130:CDS |
| ACGAATATGTTTAAGTTTCA+CGG | 0.360986 | 1_2:-72006507 | None:intergenic |
| TCATTAACTCTCTTGAGCTT+TGG | 0.367280 | 1_2:+72007004 | Msa0090130:CDS |
| ACAAAACAATGGAGGACTTA+TGG | 0.369094 | 1_2:+72005762 | Msa0090130:CDS |
| CTGTCCTAAAAGCCCTCATC+AGG | 0.374975 | 1_2:-72005560 | None:intergenic |
| GATGATGCCGCAGGATCATT+AGG | 0.378915 | 1_2:-72007749 | None:intergenic |
| CACTGTGGAGTTACTCTGTT+GGG | 0.380617 | 1_2:+72007466 | Msa0090130:CDS |
| CAAGGTAGGACTTCACAATA+TGG | 0.381844 | 1_2:-72005785 | None:intergenic |
| GTACCTTGATATATTTCCTT+AGG | 0.386131 | 1_2:-72005914 | None:intergenic |
| CTTTGCCAACGCCTCCTGTA+GGG | 0.396984 | 1_2:-72007254 | None:intergenic |
| CATTTCTGGGGTACTGGTGG+AGG | 0.417756 | 1_2:+72006359 | Msa0090130:CDS |
| TCTTCGAAACCTTTCAACTT+TGG | 0.426560 | 1_2:-72007544 | None:intergenic |
| AACTGCGTCATTGAACTTCT+CGG | 0.432785 | 1_2:+72006539 | Msa0090130:CDS |
| GTTGACTGTACTTAATGAAA+TGG | 0.436589 | 1_2:+72005665 | Msa0090130:CDS |
| CGCTTAGGTTGAGATGTATC+CGG | 0.438642 | 1_2:+72007139 | Msa0090130:CDS |
| GTTTCACGGCATTTACGAAA+TGG | 0.440988 | 1_2:-72006493 | None:intergenic |
| CAGCTAGGTACTTTCCGCTT+AGG | 0.444221 | 1_2:+72007124 | Msa0090130:CDS |
| GCAAATCAATTAAAGAAAAT+GGG | 0.446925 | 1_2:+72005517 | Msa0090130:CDS |
| TAGATACTGGTACAAAAGAA+TGG | 0.450220 | 1_2:-72007188 | None:intergenic |
| TTTAGGACAGCATGCCACTA+TGG | 0.450538 | 1_2:+72005573 | Msa0090130:CDS |
| TCACTGAACTTAAGCAGATC+CGG | 0.454118 | 1_2:-72004327 | None:intergenic |
| TGATTTACGCAGCATATTGA+AGG | 0.459394 | 1_2:+72007281 | Msa0090130:CDS |
| TTGTGCATCTGTATTGGATC+TGG | 0.460491 | 1_2:+72006419 | Msa0090130:CDS |
| CAGCAATCTGGTTCAACATC+CGG | 0.468912 | 1_2:-72007158 | None:intergenic |
| CGCAGGATCATTAGGTAGAA+AGG | 0.471731 | 1_2:-72007741 | None:intergenic |
| AAGTTGCGCAACCTCACAAT+TGG | 0.474304 | 1_2:-72007510 | None:intergenic |
| TCCAAAAGGAGCATAGATAC+TGG | 0.475479 | 1_2:-72007201 | None:intergenic |
| CCACTTCTATGGTTGATTTG+TGG | 0.479032 | 1_2:+72005493 | Msa0090130:CDS |
| CTTCATTTCTGGGGTACTGG+TGG | 0.480769 | 1_2:+72006356 | Msa0090130:CDS |
| TGCGGTTCGTTCCCTGATGA+GGG | 0.483874 | 1_2:+72005548 | Msa0090130:CDS |
| TTTCGATTCAACGCGATGGT+TGG | 0.483903 | 1_2:+72003424 | Msa0090130:exon |
| ATGAATAGACACGAAACAAC+AGG | 0.485209 | 1_2:-72006389 | None:intergenic |
| AATGGGTAGAAGCAGCAATC+TGG | 0.490303 | 1_2:-72007170 | None:intergenic |
| TGGAAGAAAAGAGATCATAA+TGG | 0.493687 | 1_2:+72005728 | Msa0090130:CDS |
| ATGCGGTTCGTTCCCTGATG+AGG | 0.495163 | 1_2:+72005547 | Msa0090130:CDS |
| AAGTGCATCCCTTAAAATCA+TGG | 0.500234 | 1_2:-72006615 | None:intergenic |
| AGAGAGTTGTGCATCTGTAT+TGG | 0.501253 | 1_2:+72006413 | Msa0090130:CDS |
| GCTCCTAAGGAAATATATCA+AGG | 0.505109 | 1_2:+72005911 | Msa0090130:CDS |
| AAAAGCGGCGGTGAAGGAAA+TGG | 0.511812 | 1_2:+72003450 | Msa0090130:CDS |
| GCAAATTGACCAAAGTTGAA+AGG | 0.512230 | 1_2:+72007535 | Msa0090130:CDS |
| TTGAAGCTTCCTGCTTCTGG+TGG | 0.513192 | 1_2:+72005708 | Msa0090130:CDS |
| TTTGCCAACGCCTCCTGTAG+GGG | 0.515868 | 1_2:-72007253 | None:intergenic |
| AGATACTGGTACAAAAGAAT+GGG | 0.517124 | 1_2:-72007187 | None:intergenic |
| GCTTTGCCAACGCCTCCTGT+AGG | 0.518176 | 1_2:-72007255 | None:intergenic |
| TTCTGTGGTTGAAGAACTTG+CGG | 0.526193 | 1_2:+72007434 | Msa0090130:CDS |
| TGGGGATGTTGAAGTTGAAG+AGG | 0.526374 | 1_2:-72003370 | None:intergenic |
| GTGGATGATGACATGGAAGA+TGG | 0.527004 | 1_2:+72005393 | Msa0090130:CDS |
| TGGAAGAAAAGCGGCGGTGA+AGG | 0.528144 | 1_2:+72003444 | Msa0090130:CDS |
| CAGAGTAACTCCACAGTGCT+AGG | 0.529878 | 1_2:-72007461 | None:intergenic |
| AATGCCCGTGTCTTAAGAGT+TGG | 0.530371 | 1_2:-72007393 | None:intergenic |
| GAAATGGCAATTCAAAACAT+AGG | 0.534559 | 1_2:-72006477 | None:intergenic |
| CAGTCATTTGATTCAAAATG+TGG | 0.535572 | 1_2:-72005818 | None:intergenic |
| CAGGTGTCTCTTCATTTCTG+GGG | 0.543367 | 1_2:+72006347 | Msa0090130:intron |
| CCTAGCTGTGGGAACTAGAC+GGG | 0.544301 | 1_2:-72007109 | None:intergenic |
| CTTTGCTTCAATCACAACCA+TGG | 0.546322 | 1_2:-72003636 | None:intergenic |
| GCACTGTGGAGTTACTCTGT+TGG | 0.548474 | 1_2:+72007465 | Msa0090130:CDS |
| GATTGAAGCAAAGCAACATA+AGG | 0.549356 | 1_2:+72003646 | Msa0090130:CDS |
| GCAGTAGATTAACGTGCGGT+GGG | 0.554065 | 1_2:+72003329 | Msa0090130:five_prime_UTR |
| ATATATTTCCTTAGGAGCGA+AGG | 0.556004 | 1_2:-72005906 | None:intergenic |
| TCTCATCATCATCACCATAG+TGG | 0.557196 | 1_2:-72005587 | None:intergenic |
| CACTGAACTTAAGCAGATCC+GGG | 0.560310 | 1_2:-72004326 | None:intergenic |
| TGATATCATTTACTTTACAT+CGG | 0.560340 | 1_2:+72005850 | Msa0090130:CDS |
| TCATCTCCAGCATATCCAAA+AGG | 0.562573 | 1_2:-72007215 | None:intergenic |
| ATATTAGAGATTAATGTGGA+TGG | 0.567480 | 1_2:+72003578 | Msa0090130:intron |
| TTGCCAACGCCTCCTGTAGG+GGG | 0.569919 | 1_2:-72007252 | None:intergenic |
| AGCAGTAGATTAACGTGCGG+TGG | 0.581881 | 1_2:+72003328 | Msa0090130:five_prime_UTR |
| AAAGGTTTCGAAGAGAAATG+AGG | 0.583015 | 1_2:+72007553 | Msa0090130:CDS |
| ACTGTACTTAATGAAATGGA+TGG | 0.588834 | 1_2:+72005669 | Msa0090130:CDS |
| TAAGACACGGGCATTTCAAG+AGG | 0.589841 | 1_2:+72007401 | Msa0090130:CDS |
| AAATGTGGAGAGCATTTCCA+AGG | 0.591878 | 1_2:-72005803 | None:intergenic |
| CATGGAAGATGGAGAACCAC+AGG | 0.594124 | 1_2:+72005404 | Msa0090130:CDS |
| GATTATATTAGAGATTAATG+TGG | 0.595537 | 1_2:+72003574 | Msa0090130:intron |
| CATATTGTGAAGTCCTACCT+TGG | 0.595814 | 1_2:+72005786 | Msa0090130:CDS |
| TCAAGAAAAGATGATGCCGC+AGG | 0.596185 | 1_2:-72007758 | None:intergenic |
| AAGCGGAAAGTACCTAGCTG+TGG | 0.600642 | 1_2:-72007121 | None:intergenic |
| CCACAAATCAACCATAGAAG+TGG | 0.600691 | 1_2:-72005493 | None:intergenic |
| TGAGAAGGCTATTGAGCATG+AGG | 0.603012 | 1_2:+72005431 | Msa0090130:CDS |
| CTTTCTACCTAATGATCCTG+CGG | 0.603597 | 1_2:+72007742 | Msa0090130:CDS |
| GTGGAGAGCATTTCCAAGGT+AGG | 0.605480 | 1_2:-72005799 | None:intergenic |
| TGAGCATGAGGTTCAAGCAA+AGG | 0.611999 | 1_2:+72005443 | Msa0090130:CDS |
| AGAACCACAGGTAGATGAGA+AGG | 0.612954 | 1_2:+72005416 | Msa0090130:CDS |
| ACCTAGCTGTGGGAACTAGA+CGG | 0.614017 | 1_2:-72007110 | None:intergenic |
| AGCGGAAAGTACCTAGCTGT+GGG | 0.619264 | 1_2:-72007120 | None:intergenic |
| ATAGCCTTCTCATCTACCTG+TGG | 0.620098 | 1_2:-72005420 | None:intergenic |
| GCAAGCCAACTCTTAAGACA+CGG | 0.624117 | 1_2:+72007388 | Msa0090130:CDS |
| CAACTGTCGAATGAAAATGA+AGG | 0.625145 | 1_2:-72006591 | None:intergenic |
| ATTTGATGACCACAAAACAA+TGG | 0.630871 | 1_2:+72005751 | Msa0090130:CDS |
| CGCGATGGTTGGAAGAAAAG+CGG | 0.631068 | 1_2:+72003435 | Msa0090130:exon |
| CGTCATTGAACTTCTCGGAG+TGG | 0.634980 | 1_2:+72006544 | Msa0090130:CDS |
| CCCGTCTAGTTCCCACAGCT+AGG | 0.637534 | 1_2:+72007109 | Msa0090130:CDS |
| AAGGCGTGTTGATATGCAGT+CGG | 0.638450 | 1_2:-72006572 | None:intergenic |
| GGAAGATGTGGATGATGACA+TGG | 0.639734 | 1_2:+72005386 | Msa0090130:intron |
| CAGATTGTGAACTATAAGCA+CGG | 0.640362 | 1_2:-72007038 | None:intergenic |
| TAAGTTTCGATTCAACGCGA+TGG | 0.642263 | 1_2:+72003420 | Msa0090130:exon |
| AGAAAATGGGAGCTTAAATG+CGG | 0.652168 | 1_2:+72005530 | Msa0090130:CDS |
| CAAGCCAACTCTTAAGACAC+GGG | 0.654132 | 1_2:+72007389 | Msa0090130:CDS |
| AATAGAAAATCTTCAGCACA+AGG | 0.655625 | 1_2:+72003673 | Msa0090130:CDS |
| TAGACACGAAACAACAGGAA+GGG | 0.657156 | 1_2:-72006384 | None:intergenic |
| TGATGACCACAAAACAATGG+AGG | 0.670885 | 1_2:+72005754 | Msa0090130:CDS |
| AATGAGGCAGCTTATTCGCG+AGG | 0.672768 | 1_2:+72007569 | Msa0090130:CDS |
| TGTCCTAAAAGCCCTCATCA+GGG | 0.678828 | 1_2:-72005559 | None:intergenic |
| GTACTTGAAAGAGAATGACC+CGG | 0.684135 | 1_2:+72004308 | Msa0090130:CDS |
| CGGATACATCTCAACCTAAG+CGG | 0.685244 | 1_2:-72007138 | None:intergenic |
| ATAGACACGAAACAACAGGA+AGG | 0.702686 | 1_2:-72006385 | None:intergenic |
| GATGGTTGGAAGAAAAGCGG+CGG | 0.709970 | 1_2:+72003438 | Msa0090130:exon |
| TTGCGGAACACCTAGCACTG+TGG | 0.724336 | 1_2:+72007451 | Msa0090130:CDS |
| TGTAGCAGTAGATTAACGTG+CGG | 0.750832 | 1_2:+72003325 | Msa0090130:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTGACAATTTTATTTTA+TGG | + | chr1_2:72006911-72006930 | Msa0090130:intron | 10.0% |
| !! | AAACTTATATTTAGCTATTA+AGG | - | chr1_2:72003998-72004017 | None:intergenic | 15.0% |
| !! | ATTACCTTCTATATATTTAT+TGG | + | chr1_2:72004223-72004242 | Msa0090130:intron | 15.0% |
| !! | TTACCTTCTATATATTTATT+GGG | + | chr1_2:72004224-72004243 | Msa0090130:intron | 15.0% |
| !!! | AAATTTTCTATCTTGATTAA+AGG | - | chr1_2:72005097-72005116 | None:intergenic | 15.0% |
| !!! | TTAATCAAGATAGAAAATTT+TGG | + | chr1_2:72005097-72005116 | Msa0090130:intron | 15.0% |
| !! | AAATTAAGAATAGTATCATT+CGG | + | chr1_2:72006166-72006185 | Msa0090130:intron | 15.0% |
| !! | TGATAAAAGTAAAACATAAA+AGG | - | chr1_2:72007618-72007637 | None:intergenic | 15.0% |
| !!! | TTATGTTTTACTTTTATCAT+TGG | + | chr1_2:72007619-72007638 | Msa0090130:intron | 15.0% |
| !! | GATTATATTAGAGATTAATG+TGG | + | chr1_2:72003574-72003593 | Msa0090130:intron | 20.0% |
| !! | ACAATGTAATGTAATGTAAT+GGG | - | chr1_2:72003704-72003723 | None:intergenic | 20.0% |
| !! | AACAATGTAATGTAATGTAA+TGG | - | chr1_2:72003705-72003724 | None:intergenic | 20.0% |
| !! | TACATTAATTGAGATGAATA+TGG | + | chr1_2:72004415-72004434 | Msa0090130:intron | 20.0% |
| !!! | ACTTTTGTTTGTTTTGTATT+AGG | + | chr1_2:72004581-72004600 | Msa0090130:intron | 20.0% |
| !! | AAAAAGGAACAAGAAATATT+GGG | - | chr1_2:72004645-72004664 | None:intergenic | 20.0% |
| !! | AAAAAAGGAACAAGAAATAT+TGG | - | chr1_2:72004646-72004665 | None:intergenic | 20.0% |
| !! | AAAATTAAATCTGTAGTGAT+TGG | - | chr1_2:72004911-72004930 | None:intergenic | 20.0% |
| !!! | TTTGTATTTTTTAGACCTAT+AGG | + | chr1_2:72004943-72004962 | Msa0090130:intron | 20.0% |
| !! | TATATAACATAACAGCAAAA+AGG | - | chr1_2:72005186-72005205 | None:intergenic | 20.0% |
| !!! | TTTTTGCTGTTATGTTATAT+AGG | + | chr1_2:72005185-72005204 | Msa0090130:intron | 20.0% |
| !! | TGCAAATCAATTAAAGAAAA+TGG | + | chr1_2:72005516-72005535 | Msa0090130:CDS | 20.0% |
| !! | GCAAATCAATTAAAGAAAAT+GGG | + | chr1_2:72005517-72005536 | Msa0090130:CDS | 20.0% |
| !! | TGATATCATTTACTTTACAT+CGG | + | chr1_2:72005850-72005869 | Msa0090130:CDS | 20.0% |
| !! | AAAATATTCTTCATTGTTGT+TGG | + | chr1_2:72005875-72005894 | Msa0090130:CDS | 20.0% |
| !! | TGATTAAAAAGCTTAATAGA+TGG | + | chr1_2:72006076-72006095 | Msa0090130:intron | 20.0% |
| !!! | AACTAAATTTTTCTGAAATC+TGG | + | chr1_2:72006108-72006127 | Msa0090130:intron | 20.0% |
| !! | TTAACATATGTCTATTCATT+TGG | + | chr1_2:72006299-72006318 | Msa0090130:intron | 20.0% |
| ! | AGAAAGATGAAAAAGAATTG+GGG | - | chr1_2:72003391-72003410 | None:intergenic | 25.0% |
| ! | CAGAAAGATGAAAAAGAATT+GGG | - | chr1_2:72003392-72003411 | None:intergenic | 25.0% |
| ! | GTTTCAACAGAAATTGATAA+AGG | + | chr1_2:72003472-72003491 | Msa0090130:CDS | 25.0% |
| ! | ATATTAGAGATTAATGTGGA+TGG | + | chr1_2:72003578-72003597 | Msa0090130:intron | 25.0% |
| ! | AAAGAGCAAAAAAAATTCCA+TGG | + | chr1_2:72003619-72003638 | Msa0090130:CDS | 25.0% |
| !!! | ACTTTCCTTTTCTTATTTGA+AGG | + | chr1_2:72003758-72003777 | Msa0090130:intron | 25.0% |
| ! | AGAATCCTTCAAATAAGAAA+AGG | - | chr1_2:72003766-72003785 | None:intergenic | 25.0% |
| ! | TATAAGCAAATAAGCTGAAA+AGG | - | chr1_2:72003803-72003822 | None:intergenic | 25.0% |
| !!! | TTAAATGTCTGAGCTATTTT+CGG | + | chr1_2:72003831-72003850 | Msa0090130:intron | 25.0% |
| ! | TAGCCCAATAAATATATAGA+AGG | - | chr1_2:72004230-72004249 | None:intergenic | 25.0% |
| !!! | AGAATTTTTTTCCCATATCT+AGG | - | chr1_2:72004515-72004534 | None:intergenic | 25.0% |
| !!! | CTTTTTCGGATGAAAAAAAA+AGG | - | chr1_2:72004661-72004680 | None:intergenic | 25.0% |
| !!! | CTTTTTTTTTCATCCGAAAA+AGG | + | chr1_2:72004659-72004678 | Msa0090130:intron | 25.0% |
| !! | TTCCATTTTGTGTTCATTAT+TGG | + | chr1_2:72004878-72004897 | Msa0090130:intron | 25.0% |
| ! | TACCAATAATGAACACAAAA+TGG | - | chr1_2:72004883-72004902 | None:intergenic | 25.0% |
| ! | CTAAAAGATTTATAGCCTAT+AGG | - | chr1_2:72004961-72004980 | None:intergenic | 25.0% |
| !! | CTATAGGCTATAAATCTTTT+AGG | + | chr1_2:72004959-72004978 | Msa0090130:intron | 25.0% |
| !!! | GCTATAAATCTTTTAGGTTA+AGG | + | chr1_2:72004965-72004984 | Msa0090130:intron | 25.0% |
| !!! | AATCTTTTAGGTTAAGGTTA+TGG | + | chr1_2:72004971-72004990 | Msa0090130:intron | 25.0% |
| ! | TCACTTTCATCAACTATATT+TGG | + | chr1_2:72005211-72005230 | Msa0090130:intron | 25.0% |
| ! | TAAAGTTATAACCACTTCTA+TGG | + | chr1_2:72005482-72005501 | Msa0090130:CDS | 25.0% |
| !!! | CATTAGTACTTTAAAGTTTG+TGG | + | chr1_2:72005989-72006008 | Msa0090130:intron | 25.0% |
| !! | TTCTTAATTTTGTTCGAGTA+CGG | - | chr1_2:72006156-72006175 | None:intergenic | 25.0% |
| ! | ACTTTCTTGTTGAAATTATC+AGG | + | chr1_2:72006328-72006347 | Msa0090130:intron | 25.0% |
| !! | ACGAATATGTTTAAGTTTCA+CGG | - | chr1_2:72006510-72006529 | None:intergenic | 25.0% |
| ! | TGCACTTAATACAAAAACTA+AGG | + | chr1_2:72006631-72006650 | Msa0090130:CDS | 25.0% |
| ! | TACTCATTACTAATGAGATA+CGG | - | chr1_2:72006802-72006821 | None:intergenic | 25.0% |
| ! | ATCTCATTAGTAATGAGTAA+AGG | + | chr1_2:72006803-72006822 | Msa0090130:intron | 25.0% |
| ! | CGAATAAAACAAATCTATCA+AGG | - | chr1_2:72006846-72006865 | None:intergenic | 25.0% |
| !!! | TTGTTTTATTCGTGTTTGAT+TGG | + | chr1_2:72006854-72006873 | Msa0090130:intron | 25.0% |
| !!! | AGATTTTCTCTTTACTTTTG+AGG | + | chr1_2:72007790-72007809 | Msa0090130:CDS | 25.0% |
| GCAGAAAGATGAAAAAGAAT+TGG | - | chr1_2:72003393-72003412 | None:intergenic | 30.0% | |
| AATAGAAAATCTTCAGCACA+AGG | + | chr1_2:72003673-72003692 | Msa0090130:CDS | 30.0% | |
| TTCAAGCAATGTTTATCTCT+AGG | + | chr1_2:72004033-72004052 | Msa0090130:intron | 30.0% | |
| GTATGTGTGAAATTTGAACT+AGG | + | chr1_2:72004184-72004203 | Msa0090130:intron | 30.0% | |
| ! | TTAACAAACTTTTCCATTGC+AGG | + | chr1_2:72004269-72004288 | Msa0090130:intron | 30.0% |
| AAATACACATCTCACATCAA+TGG | - | chr1_2:72004458-72004477 | None:intergenic | 30.0% | |
| !!! | TTTTTTTCCCATATCTAGGA+TGG | - | chr1_2:72004511-72004530 | None:intergenic | 30.0% |
| ! | TGTTTTGTATTAGGAAGATG+TGG | + | chr1_2:72004590-72004609 | Msa0090130:intron | 30.0% |
| ! | GTTTTGTATTAGGAAGATGT+GGG | + | chr1_2:72004591-72004610 | Msa0090130:intron | 30.0% |
| CACAACGAAATGTAAATTCA+AGG | + | chr1_2:72004747-72004766 | Msa0090130:intron | 30.0% | |
| TTAAATCTGTAGTGATTGGT+GGG | - | chr1_2:72004907-72004926 | None:intergenic | 30.0% | |
| ATTAAATCTGTAGTGATTGG+TGG | - | chr1_2:72004908-72004927 | None:intergenic | 30.0% | |
| GTGTCTTCTCAAAATCTAAT+AGG | - | chr1_2:72005001-72005020 | None:intergenic | 30.0% | |
| !! | TTAGATTTTGAGAAGACACT+TGG | + | chr1_2:72005002-72005021 | Msa0090130:intron | 30.0% |
| !! | TAGATTTTGAGAAGACACTT+GGG | + | chr1_2:72005003-72005022 | Msa0090130:intron | 30.0% |
| AATCTCTTGTAAGCTATAGA+TGG | + | chr1_2:72005047-72005066 | Msa0090130:intron | 30.0% | |
| ATTTAGTAATGCACGCAAAT+AGG | - | chr1_2:72005301-72005320 | None:intergenic | 30.0% | |
| GTTGACTGTACTTAATGAAA+TGG | + | chr1_2:72005665-72005684 | Msa0090130:CDS | 30.0% | |
| ACTGTACTTAATGAAATGGA+TGG | + | chr1_2:72005669-72005688 | Msa0090130:CDS | 30.0% | |
| TGGAAGAAAAGAGATCATAA+TGG | + | chr1_2:72005728-72005747 | Msa0090130:CDS | 30.0% | |
| ! | ATTTGATGACCACAAAACAA+TGG | + | chr1_2:72005751-72005770 | Msa0090130:CDS | 30.0% |
| CAGTCATTTGATTCAAAATG+TGG | - | chr1_2:72005821-72005840 | None:intergenic | 30.0% | |
| GTACCTTGATATATTTCCTT+AGG | - | chr1_2:72005917-72005936 | None:intergenic | 30.0% | |
| TCAAGGTACAAATAGTTCAT+TGG | + | chr1_2:72005928-72005947 | Msa0090130:intron | 30.0% | |
| ! | TTTTGTAGTGAACAATGATG+AGG | - | chr1_2:72005957-72005976 | None:intergenic | 30.0% |
| ! | CCAGAAGTATATACTTACAA+GGG | - | chr1_2:72006220-72006239 | None:intergenic | 30.0% |
| ! | ACCAGAAGTATATACTTACA+AGG | - | chr1_2:72006221-72006240 | None:intergenic | 30.0% |
| ! | TTCTGGTAATGTGAATGAAA+AGG | + | chr1_2:72006234-72006253 | Msa0090130:intron | 30.0% |
| TGCATAGATGATTGCTTTAA+AGG | + | chr1_2:72006443-72006462 | Msa0090130:CDS | 30.0% | |
| GAAATGGCAATTCAAAACAT+AGG | - | chr1_2:72006480-72006499 | None:intergenic | 30.0% | |
| GATAGATCAATTGTTAGGAT+TGG | - | chr1_2:72006757-72006776 | None:intergenic | 30.0% | |
| ! | TTCGTCTGAATGTTTTCTTT+AGG | + | chr1_2:72006951-72006970 | Msa0090130:intron | 30.0% |
| GGCTACTCCAAAAATTATTT+GGG | - | chr1_2:72007091-72007110 | None:intergenic | 30.0% | |
| AGATACTGGTACAAAAGAAT+GGG | - | chr1_2:72007190-72007209 | None:intergenic | 30.0% | |
| TAGATACTGGTACAAAAGAA+TGG | - | chr1_2:72007191-72007210 | None:intergenic | 30.0% | |
| ! | TGTCTTTTATTCCAATTGTG+AGG | + | chr1_2:72007499-72007518 | Msa0090130:CDS | 30.0% |
| GATTGAAGCAAAGCAACATA+AGG | + | chr1_2:72003646-72003665 | Msa0090130:CDS | 35.0% | |
| AAAAGGAAAGTTGCATACAC+AGG | - | chr1_2:72003749-72003768 | None:intergenic | 35.0% | |
| TAGACATATTGCATGTCCAT+AGG | + | chr1_2:72004089-72004108 | Msa0090130:intron | 35.0% | |
| AGACATATTGCATGTCCATA+GGG | + | chr1_2:72004090-72004109 | Msa0090130:intron | 35.0% | |
| ACAAGTAAAGGTTTCAGTGA+AGG | + | chr1_2:72004128-72004147 | Msa0090130:intron | 35.0% | |
| TGTGTGAAATTTGAACTAGG+TGG | + | chr1_2:72004187-72004206 | Msa0090130:intron | 35.0% | |
| TTTATTGGGCTACATTCTGT+TGG | + | chr1_2:72004238-72004257 | Msa0090130:intron | 35.0% | |
| TAAAAATCTTCGTCCTGCAA+TGG | - | chr1_2:72004285-72004304 | None:intergenic | 35.0% | |
| TTCTAATGCCATCCTAGATA+TGG | + | chr1_2:72004500-72004519 | Msa0090130:intron | 35.0% | |
| TCTAATGCCATCCTAGATAT+GGG | + | chr1_2:72004501-72004520 | Msa0090130:intron | 35.0% | |
| AAATGCTAACATGTGCTCTA+AGG | + | chr1_2:72004771-72004790 | Msa0090130:intron | 35.0% | |
| AATGCTAACATGTGCTCTAA+GGG | + | chr1_2:72004772-72004791 | Msa0090130:intron | 35.0% | |
| !! | AGATTTTGAGAAGACACTTG+GGG | + | chr1_2:72005004-72005023 | Msa0090130:intron | 35.0% |
| ! | TTGTGTGTTTGCTGGTAAAT+TGG | + | chr1_2:72005127-72005146 | Msa0090130:intron | 35.0% |
| ! | GTGCAGTGATCATAATTTGT+AGG | + | chr1_2:72005233-72005252 | Msa0090130:intron | 35.0% |
| TGTAGGAAATCTCAAGAGAT+TGG | + | chr1_2:72005250-72005269 | Msa0090130:intron | 35.0% | |
| ! | TTCTTTTATCCAGGAAGATG+TGG | + | chr1_2:72005374-72005393 | Msa0090130:intron | 35.0% |
| AGAAAATGGGAGCTTAAATG+CGG | + | chr1_2:72005530-72005549 | Msa0090130:CDS | 35.0% | |
| !! | ATAAGTCCTCCATTGTTTTG+TGG | - | chr1_2:72005763-72005782 | None:intergenic | 35.0% |
| ACAAAACAATGGAGGACTTA+TGG | + | chr1_2:72005762-72005781 | Msa0090130:CDS | 35.0% | |
| ATATATTTCCTTAGGAGCGA+AGG | - | chr1_2:72005909-72005928 | None:intergenic | 35.0% | |
| GCTCCTAAGGAAATATATCA+AGG | + | chr1_2:72005911-72005930 | Msa0090130:CDS | 35.0% | |
| TGAATATGTCTTCCAATGCT+TGG | + | chr1_2:72006020-72006039 | Msa0090130:intron | 35.0% | |
| CCCTTGTAAGTATATACTTC+TGG | + | chr1_2:72006217-72006236 | Msa0090130:intron | 35.0% | |
| !! | AAGAACATTTGTGACTTGCT+AGG | + | chr1_2:72006267-72006286 | Msa0090130:intron | 35.0% |
| ATGAATAGACACGAAACAAC+AGG | - | chr1_2:72006392-72006411 | None:intergenic | 35.0% | |
| CAACTGTCGAATGAAAATGA+AGG | - | chr1_2:72006594-72006613 | None:intergenic | 35.0% | |
| ! | CTTCATTTTCATTCGACAGT+TGG | + | chr1_2:72006592-72006611 | Msa0090130:CDS | 35.0% |
| ! | ACAGTTGGCCATGATTTTAA+GGG | + | chr1_2:72006607-72006626 | Msa0090130:CDS | 35.0% |
| AAGTGCATCCCTTAAAATCA+TGG | - | chr1_2:72006618-72006637 | None:intergenic | 35.0% | |
| TCTAACAGCAAAATGTTACG+AGG | - | chr1_2:72006711-72006730 | None:intergenic | 35.0% | |
| !!! | TCGTAACATTTTGCTGTTAG+AGG | + | chr1_2:72006710-72006729 | Msa0090130:intron | 35.0% |
| !!! | CGTAACATTTTGCTGTTAGA+GGG | + | chr1_2:72006711-72006730 | Msa0090130:intron | 35.0% |
| GTCAGGATAGATCAATTGTT+AGG | - | chr1_2:72006762-72006781 | None:intergenic | 35.0% | |
| CAAATCTATCAAGGAATGTC+TGG | - | chr1_2:72006837-72006856 | None:intergenic | 35.0% | |
| ! | CTTTTCGCAAGGTTTATGAA+TGG | + | chr1_2:72006977-72006996 | Msa0090130:CDS | 35.0% |
| TCATTAACTCTCTTGAGCTT+TGG | + | chr1_2:72007004-72007023 | Msa0090130:CDS | 35.0% | |
| CAGATTGTGAACTATAAGCA+CGG | - | chr1_2:72007041-72007060 | None:intergenic | 35.0% | |
| CCAAAAATTATTTGGGTCAG+TGG | - | chr1_2:72007084-72007103 | None:intergenic | 35.0% | |
| ! | CCACTGACCCAAATAATTTT+TGG | + | chr1_2:72007081-72007100 | Msa0090130:CDS | 35.0% |
| GGGCTACTCCAAAAATTATT+TGG | - | chr1_2:72007092-72007111 | None:intergenic | 35.0% | |
| TGATTTACGCAGCATATTGA+AGG | + | chr1_2:72007281-72007300 | Msa0090130:CDS | 35.0% | |
| !! | TATTGAAGGTACTCGTTACT+TGG | + | chr1_2:72007295-72007314 | Msa0090130:intron | 35.0% |
| ! | AAATCCACCTAACCTTTTAG+AGG | + | chr1_2:72007345-72007364 | Msa0090130:intron | 35.0% |
| ! | AAGGATACCTCTAAAAGGTT+AGG | - | chr1_2:72007355-72007374 | None:intergenic | 35.0% |
| TATGCAAGGATACCTCTAAA+AGG | - | chr1_2:72007360-72007379 | None:intergenic | 35.0% | |
| !! | TAGAGGTATCCTTGCATATT+AGG | + | chr1_2:72007362-72007381 | Msa0090130:intron | 35.0% |
| GCAAATTGACCAAAGTTGAA+AGG | + | chr1_2:72007535-72007554 | Msa0090130:CDS | 35.0% | |
| TCTTCGAAACCTTTCAACTT+TGG | - | chr1_2:72007547-72007566 | None:intergenic | 35.0% | |
| AAAGGTTTCGAAGAGAAATG+AGG | + | chr1_2:72007553-72007572 | Msa0090130:CDS | 35.0% | |
| ! | AATTTTCCACACTCAGATTG+AGG | + | chr1_2:72007679-72007698 | Msa0090130:intron | 35.0% |
| TGTAGCAGTAGATTAACGTG+CGG | + | chr1_2:72003325-72003344 | Msa0090130:five_prime_UTR | 40.0% | |
| TAAGTTTCGATTCAACGCGA+TGG | + | chr1_2:72003420-72003439 | Msa0090130:exon | 40.0% | |
| CTTTGCTTCAATCACAACCA+TGG | - | chr1_2:72003639-72003658 | None:intergenic | 40.0% | |
| AGTAAGCTGCTTATCCAAAC+AGG | + | chr1_2:72003971-72003990 | Msa0090130:intron | 40.0% | |
| GTAAGCTGCTTATCCAAACA+GGG | + | chr1_2:72003972-72003991 | Msa0090130:intron | 40.0% | |
| TTAGCTATTAAGGCCCTGTT+TGG | - | chr1_2:72003988-72004007 | None:intergenic | 40.0% | |
| ACGTAGACGAAGACAAGTAA+AGG | + | chr1_2:72004116-72004135 | Msa0090130:intron | 40.0% | |
| TGAACTAGGTGGTGATTGAT+AGG | + | chr1_2:72004198-72004217 | Msa0090130:intron | 40.0% | |
| GAACTAGGTGGTGATTGATA+GGG | + | chr1_2:72004199-72004218 | Msa0090130:intron | 40.0% | |
| GTACTTGAAAGAGAATGACC+CGG | + | chr1_2:72004308-72004327 | Msa0090130:CDS | 40.0% | |
| TCACTGAACTTAAGCAGATC+CGG | - | chr1_2:72004330-72004349 | None:intergenic | 40.0% | |
| CTTAGCTACTAAGCTTGCAT+TGG | + | chr1_2:72004533-72004552 | Msa0090130:intron | 40.0% | |
| TCATTGCAGTGGCTAAATGA+TGG | + | chr1_2:72004682-72004701 | Msa0090130:intron | 40.0% | |
| CATTGCAGTGGCTAAATGAT+GGG | + | chr1_2:72004683-72004702 | Msa0090130:intron | 40.0% | |
| ! | TCCCTTTAGAGACATGTTTG+TGG | + | chr1_2:72004719-72004738 | Msa0090130:intron | 40.0% |
| GCCACAAACATGTCTCTAAA+GGG | - | chr1_2:72004723-72004742 | None:intergenic | 40.0% | |
| TGCCACAAACATGTCTCTAA+AGG | - | chr1_2:72004724-72004743 | None:intergenic | 40.0% | |
| TGCTGGTAAATTGGTTGAAG+AGG | + | chr1_2:72005136-72005155 | Msa0090130:intron | 40.0% | |
| AATTGGTTGAAGAGGAATGC+CGG | + | chr1_2:72005144-72005163 | Msa0090130:intron | 40.0% | |
| AGGAGCAATCTTGACAATAC+CGG | - | chr1_2:72005166-72005185 | None:intergenic | 40.0% | |
| ! | CTGTTTCGCTTCTTTTATCC+AGG | + | chr1_2:72005365-72005384 | Msa0090130:intron | 40.0% |
| CCACAAATCAACCATAGAAG+TGG | - | chr1_2:72005496-72005515 | None:intergenic | 40.0% | |
| !! | CCACTTCTATGGTTGATTTG+TGG | + | chr1_2:72005493-72005512 | Msa0090130:CDS | 40.0% |
| TCTCATCATCATCACCATAG+TGG | - | chr1_2:72005590-72005609 | None:intergenic | 40.0% | |
| TGATGACCACAAAACAATGG+AGG | + | chr1_2:72005754-72005773 | Msa0090130:CDS | 40.0% | |
| CAAGGTAGGACTTCACAATA+TGG | - | chr1_2:72005788-72005807 | None:intergenic | 40.0% | |
| CATATTGTGAAGTCCTACCT+TGG | + | chr1_2:72005786-72005805 | Msa0090130:CDS | 40.0% | |
| !! | AAATGTGGAGAGCATTTCCA+AGG | - | chr1_2:72005806-72005825 | None:intergenic | 40.0% |
| AATTACTGCACAAGACCGAA+TGG | - | chr1_2:72006057-72006076 | None:intergenic | 40.0% | |
| ATCAGGTGTCTCTTCATTTC+TGG | + | chr1_2:72006345-72006364 | Msa0090130:intron | 40.0% | |
| TCAGGTGTCTCTTCATTTCT+GGG | + | chr1_2:72006346-72006365 | Msa0090130:intron | 40.0% | |
| TAGACACGAAACAACAGGAA+GGG | - | chr1_2:72006387-72006406 | None:intergenic | 40.0% | |
| ATAGACACGAAACAACAGGA+AGG | - | chr1_2:72006388-72006407 | None:intergenic | 40.0% | |
| AGAGAGTTGTGCATCTGTAT+TGG | + | chr1_2:72006413-72006432 | Msa0090130:CDS | 40.0% | |
| TTGTGCATCTGTATTGGATC+TGG | + | chr1_2:72006419-72006438 | Msa0090130:CDS | 40.0% | |
| GTTTCACGGCATTTACGAAA+TGG | - | chr1_2:72006496-72006515 | None:intergenic | 40.0% | |
| AACTGCGTCATTGAACTTCT+CGG | + | chr1_2:72006539-72006558 | Msa0090130:CDS | 40.0% | |
| ! | GACAGTTGGCCATGATTTTA+AGG | + | chr1_2:72006606-72006625 | Msa0090130:CDS | 40.0% |
| !! | CAATTGTTAGGATTGGTTCC+AGG | - | chr1_2:72006750-72006769 | None:intergenic | 40.0% |
| AAGTGTCAAGCTCATAAGTC+AGG | - | chr1_2:72006779-72006798 | None:intergenic | 40.0% | |
| !! | TCTTTAGGAAGCTTTTCGCA+AGG | + | chr1_2:72006966-72006985 | Msa0090130:intron | 40.0% |
| ! | ACCAGTATCTATGCTCCTTT+TGG | + | chr1_2:72007200-72007219 | Msa0090130:CDS | 40.0% |
| ! | TCCAAAAGGAGCATAGATAC+TGG | - | chr1_2:72007204-72007223 | None:intergenic | 40.0% |
| ! | TATGCTCCTTTTGGATATGC+TGG | + | chr1_2:72007209-72007228 | Msa0090130:CDS | 40.0% |
| TCATCTCCAGCATATCCAAA+AGG | - | chr1_2:72007218-72007237 | None:intergenic | 40.0% | |
| ! | GATACCTCTAAAAGGTTAGG+TGG | - | chr1_2:72007352-72007371 | None:intergenic | 40.0% |
| ! | GCTTGCTAACCTAATATGCA+AGG | - | chr1_2:72007374-72007393 | None:intergenic | 40.0% |
| !!! | AGAGGCTTGTGTTTTTTCTG+TGG | + | chr1_2:72007419-72007438 | Msa0090130:CDS | 40.0% |
| TTCTGTGGTTGAAGAACTTG+CGG | + | chr1_2:72007434-72007453 | Msa0090130:CDS | 40.0% | |
| ! | TTGGCATGCATCAGATTTTG+TGG | + | chr1_2:72007638-72007657 | Msa0090130:intron | 40.0% |
| ! | TGCGCTTTTCATTCACAAAC+TGG | - | chr1_2:72007712-72007731 | None:intergenic | 40.0% |
| CTTTCTACCTAATGATCCTG+CGG | + | chr1_2:72007742-72007761 | Msa0090130:CDS | 40.0% | |
| TGGGGATGTTGAAGTTGAAG+AGG | - | chr1_2:72003373-72003392 | None:intergenic | 45.0% | |
| TTTCGATTCAACGCGATGGT+TGG | + | chr1_2:72003424-72003443 | Msa0090130:exon | 45.0% | |
| CACTGAACTTAAGCAGATCC+GGG | - | chr1_2:72004329-72004348 | None:intergenic | 45.0% | |
| TCCGAAAAAGGTCATTGCAG+TGG | + | chr1_2:72004671-72004690 | Msa0090130:intron | 45.0% | |
| ! | GCCACTGCAATGACCTTTTT+CGG | - | chr1_2:72004675-72004694 | None:intergenic | 45.0% |
| TGTCATCATCCACATCTTCC+TGG | - | chr1_2:72005386-72005405 | None:intergenic | 45.0% | |
| GGAAGATGTGGATGATGACA+TGG | + | chr1_2:72005386-72005405 | Msa0090130:intron | 45.0% | |
| GTGGATGATGACATGGAAGA+TGG | + | chr1_2:72005393-72005412 | Msa0090130:CDS | 45.0% | |
| AGAACCACAGGTAGATGAGA+AGG | + | chr1_2:72005416-72005435 | Msa0090130:CDS | 45.0% | |
| ATAGCCTTCTCATCTACCTG+TGG | - | chr1_2:72005423-72005442 | None:intergenic | 45.0% | |
| TGAGAAGGCTATTGAGCATG+AGG | + | chr1_2:72005431-72005450 | Msa0090130:CDS | 45.0% | |
| TGAGCATGAGGTTCAAGCAA+AGG | + | chr1_2:72005443-72005462 | Msa0090130:CDS | 45.0% | |
| TGTCCTAAAAGCCCTCATCA+GGG | - | chr1_2:72005562-72005581 | None:intergenic | 45.0% | |
| ! | TTTAGGACAGCATGCCACTA+TGG | + | chr1_2:72005573-72005592 | Msa0090130:CDS | 45.0% |
| TTGTTGAAGCTTCCTGCTTC+TGG | + | chr1_2:72005705-72005724 | Msa0090130:CDS | 45.0% | |
| ! | TCTTTTCTTCCACCAGAAGC+AGG | - | chr1_2:72005720-72005739 | None:intergenic | 45.0% |
| ! | CTTCCAATGCTTGGTGATTG+TGG | + | chr1_2:72006029-72006048 | Msa0090130:intron | 45.0% |
| ! | TTGGTGATTGTGGCACCATT+CGG | + | chr1_2:72006039-72006058 | Msa0090130:intron | 45.0% |
| CAGGTGTCTCTTCATTTCTG+GGG | + | chr1_2:72006347-72006366 | Msa0090130:intron | 45.0% | |
| !! | TCTCTTCATTTCTGGGGTAC+TGG | + | chr1_2:72006353-72006372 | Msa0090130:CDS | 45.0% |
| ! | AAGGCGTGTTGATATGCAGT+CGG | - | chr1_2:72006575-72006594 | None:intergenic | 45.0% |
| GAGGGATACAATCAATCACC+TGG | + | chr1_2:72006729-72006748 | Msa0090130:intron | 45.0% | |
| CGGATACATCTCAACCTAAG+CGG | - | chr1_2:72007141-72007160 | None:intergenic | 45.0% | |
| !! | CGCTTAGGTTGAGATGTATC+CGG | + | chr1_2:72007139-72007158 | Msa0090130:CDS | 45.0% |
| ! | CAGCAATCTGGTTCAACATC+CGG | - | chr1_2:72007161-72007180 | None:intergenic | 45.0% |
| AATGGGTAGAAGCAGCAATC+TGG | - | chr1_2:72007173-72007192 | None:intergenic | 45.0% | |
| GCAAGCCAACTCTTAAGACA+CGG | + | chr1_2:72007388-72007407 | Msa0090130:CDS | 45.0% | |
| CAAGCCAACTCTTAAGACAC+GGG | + | chr1_2:72007389-72007408 | Msa0090130:CDS | 45.0% | |
| AATGCCCGTGTCTTAAGAGT+TGG | - | chr1_2:72007396-72007415 | None:intergenic | 45.0% | |
| TAAGACACGGGCATTTCAAG+AGG | + | chr1_2:72007401-72007420 | Msa0090130:CDS | 45.0% | |
| CACTGTGGAGTTACTCTGTT+GGG | + | chr1_2:72007466-72007485 | Msa0090130:CDS | 45.0% | |
| GAGTTACTCTGTTGGGTTCA+TGG | + | chr1_2:72007473-72007492 | Msa0090130:CDS | 45.0% | |
| AAGTTGCGCAACCTCACAAT+TGG | - | chr1_2:72007513-72007532 | None:intergenic | 45.0% | |
| ! | CATTAGCCTCAATCTGAGTG+TGG | - | chr1_2:72007688-72007707 | None:intergenic | 45.0% |
| CGCAGGATCATTAGGTAGAA+AGG | - | chr1_2:72007744-72007763 | None:intergenic | 45.0% | |
| TCAAGAAAAGATGATGCCGC+AGG | - | chr1_2:72007761-72007780 | None:intergenic | 45.0% | |
| ! | TGCGGCATCATCTTTTCTTG+AGG | + | chr1_2:72007760-72007779 | Msa0090130:CDS | 45.0% |
| AGCAGTAGATTAACGTGCGG+TGG | + | chr1_2:72003328-72003347 | Msa0090130:five_prime_UTR | 50.0% | |
| GCAGTAGATTAACGTGCGGT+GGG | + | chr1_2:72003329-72003348 | Msa0090130:five_prime_UTR | 50.0% | |
| CGCGATGGTTGGAAGAAAAG+CGG | + | chr1_2:72003435-72003454 | Msa0090130:exon | 50.0% | |
| GATGGTTGGAAGAAAAGCGG+CGG | + | chr1_2:72003438-72003457 | Msa0090130:exon | 50.0% | |
| AAAAGCGGCGGTGAAGGAAA+TGG | + | chr1_2:72003450-72003469 | Msa0090130:CDS | 50.0% | |
| CTTCGTCTACGTCTACCCTA+TGG | - | chr1_2:72004108-72004127 | None:intergenic | 50.0% | |
| !! | GTGGCTAAATGATGGGTGAC+TGG | + | chr1_2:72004690-72004709 | Msa0090130:intron | 50.0% |
| !! | CTAAATGATGGGTGACTGGC+TGG | + | chr1_2:72004694-72004713 | Msa0090130:intron | 50.0% |
| GACTGTGCTTGTGTGTTTGC+TGG | + | chr1_2:72005119-72005138 | Msa0090130:intron | 50.0% | |
| CATGGAAGATGGAGAACCAC+AGG | + | chr1_2:72005404-72005423 | Msa0090130:CDS | 50.0% | |
| ! | GTTCCCTGATGAGGGCTTTT+AGG | + | chr1_2:72005556-72005575 | Msa0090130:CDS | 50.0% |
| CTGTCCTAAAAGCCCTCATC+AGG | - | chr1_2:72005563-72005582 | None:intergenic | 50.0% | |
| TTGAAGCTTCCTGCTTCTGG+TGG | + | chr1_2:72005708-72005727 | Msa0090130:CDS | 50.0% | |
| !! | GTGGAGAGCATTTCCAAGGT+AGG | - | chr1_2:72005802-72005821 | None:intergenic | 50.0% |
| !! | CTGCTTTTCCTTCGCTCCTA+AGG | + | chr1_2:72005898-72005917 | Msa0090130:CDS | 50.0% |
| GTGCCACAATCACCAAGCAT+TGG | - | chr1_2:72006035-72006054 | None:intergenic | 50.0% | |
| !! | CTTCATTTCTGGGGTACTGG+TGG | + | chr1_2:72006356-72006375 | Msa0090130:CDS | 50.0% |
| CGTCATTGAACTTCTCGGAG+TGG | + | chr1_2:72006544-72006563 | Msa0090130:CDS | 50.0% | |
| ACCTAGCTGTGGGAACTAGA+CGG | - | chr1_2:72007113-72007132 | None:intergenic | 50.0% | |
| !! | AGCGGAAAGTACCTAGCTGT+GGG | - | chr1_2:72007123-72007142 | None:intergenic | 50.0% |
| !! | AAGCGGAAAGTACCTAGCTG+TGG | - | chr1_2:72007124-72007143 | None:intergenic | 50.0% |
| CAGCTAGGTACTTTCCGCTT+AGG | + | chr1_2:72007124-72007143 | Msa0090130:CDS | 50.0% | |
| GAGTTGAATAGACCCCCTAC+AGG | + | chr1_2:72007240-72007259 | Msa0090130:CDS | 50.0% | |
| TTGAATAGACCCCCTACAGG+AGG | + | chr1_2:72007243-72007262 | Msa0090130:CDS | 50.0% | |
| CAGAGTAACTCCACAGTGCT+AGG | - | chr1_2:72007464-72007483 | None:intergenic | 50.0% | |
| GCACTGTGGAGTTACTCTGT+TGG | + | chr1_2:72007465-72007484 | Msa0090130:CDS | 50.0% | |
| AATGAGGCAGCTTATTCGCG+AGG | + | chr1_2:72007569-72007588 | Msa0090130:CDS | 50.0% | |
| GATGATGCCGCAGGATCATT+AGG | - | chr1_2:72007752-72007771 | None:intergenic | 50.0% | |
| TGGAAGAAAAGCGGCGGTGA+AGG | + | chr1_2:72003444-72003463 | Msa0090130:CDS | 55.0% | |
| ATGCGGTTCGTTCCCTGATG+AGG | + | chr1_2:72005547-72005566 | Msa0090130:CDS | 55.0% | |
| TGCGGTTCGTTCCCTGATGA+GGG | + | chr1_2:72005548-72005567 | Msa0090130:CDS | 55.0% | |
| !! | CATTTCTGGGGTACTGGTGG+AGG | + | chr1_2:72006359-72006378 | Msa0090130:CDS | 55.0% |
| CCTAGCTGTGGGAACTAGAC+GGG | - | chr1_2:72007112-72007131 | None:intergenic | 55.0% | |
| TTTGCCAACGCCTCCTGTAG+GGG | - | chr1_2:72007256-72007275 | None:intergenic | 55.0% | |
| CTTTGCCAACGCCTCCTGTA+GGG | - | chr1_2:72007257-72007276 | None:intergenic | 55.0% | |
| TTGCGGAACACCTAGCACTG+TGG | + | chr1_2:72007451-72007470 | Msa0090130:CDS | 55.0% | |
| ! | CCCGTCTAGTTCCCACAGCT+AGG | + | chr1_2:72007109-72007128 | Msa0090130:CDS | 60.0% |
| TTGCCAACGCCTCCTGTAGG+GGG | - | chr1_2:72007255-72007274 | None:intergenic | 60.0% | |
| GCTTTGCCAACGCCTCCTGT+AGG | - | chr1_2:72007258-72007277 | None:intergenic | 60.0% | |
| ! | AGACCCCCTACAGGAGGCGT+TGG | + | chr1_2:72007249-72007268 | Msa0090130:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 72003301 | 72007817 | 72003301 | ID=Msa0090130;Name=Msa0090130 |
| chr1_2 | mRNA | 72003301 | 72007817 | 72003301 | ID=Msa0090130-mRNA-1;Parent=Msa0090130;Name=Msa0090130-mRNA-1;_AED=0.05;_eAED=0.05;_QI=138|0.42|0.25|1|1|1|8|0|581 |
| chr1_2 | exon | 72003301 | 72003493 | 72003301 | ID=Msa0090130-mRNA-1:exon:24930;Parent=Msa0090130-mRNA-1 |
| chr1_2 | exon | 72003585 | 72003694 | 72003585 | ID=Msa0090130-mRNA-1:exon:24931;Parent=Msa0090130-mRNA-1 |
| chr1_2 | exon | 72004291 | 72004362 | 72004291 | ID=Msa0090130-mRNA-1:exon:24932;Parent=Msa0090130-mRNA-1 |
| chr1_2 | exon | 72005387 | 72005932 | 72005387 | ID=Msa0090130-mRNA-1:exon:24933;Parent=Msa0090130-mRNA-1 |
| chr1_2 | exon | 72006350 | 72006652 | 72006350 | ID=Msa0090130-mRNA-1:exon:24934;Parent=Msa0090130-mRNA-1 |
| chr1_2 | exon | 72006973 | 72007302 | 72006973 | ID=Msa0090130-mRNA-1:exon:24935;Parent=Msa0090130-mRNA-1 |
| chr1_2 | exon | 72007384 | 72007590 | 72007384 | ID=Msa0090130-mRNA-1:exon:24936;Parent=Msa0090130-mRNA-1 |
| chr1_2 | exon | 72007695 | 72007817 | 72007695 | ID=Msa0090130-mRNA-1:exon:24937;Parent=Msa0090130-mRNA-1 |
| chr1_2 | five_prime_UTR | 72003301 | 72003438 | 72003301 | ID=Msa0090130-mRNA-1:five_prime_utr;Parent=Msa0090130-mRNA-1 |
| chr1_2 | CDS | 72003439 | 72003493 | 72003439 | ID=Msa0090130-mRNA-1:cds;Parent=Msa0090130-mRNA-1 |
| chr1_2 | CDS | 72003585 | 72003694 | 72003585 | ID=Msa0090130-mRNA-1:cds;Parent=Msa0090130-mRNA-1 |
| chr1_2 | CDS | 72004291 | 72004362 | 72004291 | ID=Msa0090130-mRNA-1:cds;Parent=Msa0090130-mRNA-1 |
| chr1_2 | CDS | 72005387 | 72005932 | 72005387 | ID=Msa0090130-mRNA-1:cds;Parent=Msa0090130-mRNA-1 |
| chr1_2 | CDS | 72006350 | 72006652 | 72006350 | ID=Msa0090130-mRNA-1:cds;Parent=Msa0090130-mRNA-1 |
| chr1_2 | CDS | 72006973 | 72007302 | 72006973 | ID=Msa0090130-mRNA-1:cds;Parent=Msa0090130-mRNA-1 |
| chr1_2 | CDS | 72007384 | 72007590 | 72007384 | ID=Msa0090130-mRNA-1:cds;Parent=Msa0090130-mRNA-1 |
| chr1_2 | CDS | 72007695 | 72007817 | 72007695 | ID=Msa0090130-mRNA-1:cds;Parent=Msa0090130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
