Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090080 | sp|Q9ZPV5|NOC2_ARATH | 63.775 | 657 | 215 | 5 | 49 | 689 | 63 | 712 | 0.0 | 844 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090080 | G7ID95 | 98.358 | 731 | 11 | 1 | 1 | 730 | 1 | 731 | 0.0 | 1491 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0019390 | Msa0090080 | 0.813224 | 2.852410e-51 | -8.615850e-47 |
| Msa0066740 | Msa0090080 | 0.802481 | 5.497716e-49 | -8.615850e-47 |
| Msa0079820 | Msa0090080 | 0.808596 | 2.865442e-50 | -8.615850e-47 |
| Msa0090080 | Msa0090130 | 0.816343 | 5.808012e-52 | -8.615850e-47 |
| Msa0090080 | Msa0127390 | 0.809835 | 1.554434e-50 | -8.615850e-47 |
| Msa0090080 | Msa0660850 | 0.814143 | 1.790435e-51 | -8.615850e-47 |
| Msa0090080 | Msa0709040 | 0.802963 | 4.371700e-49 | -8.615850e-47 |
| Msa0090080 | Msa0757940 | 0.809455 | 1.876429e-50 | -8.615850e-47 |
| Msa0090080 | Msa0799260 | 0.828568 | 8.363869e-55 | -8.615850e-47 |
| Msa0090080 | Msa0799310 | 0.821695 | 3.521636e-53 | -8.615850e-47 |
| Msa0090080 | Msa0837020 | 0.812043 | 5.170090e-51 | -8.615850e-47 |
| Msa0090080 | Msa0837630 | 0.804658 | 1.943933e-49 | -8.615850e-47 |
| Msa0090080 | Msa0879540 | 0.835137 | 1.998812e-56 | -8.615850e-47 |
| Msa0090080 | Msa0882580 | 0.800065 | 1.716726e-48 | -8.615850e-47 |
| Msa0090080 | Msa0933300 | 0.805738 | 1.154754e-49 | -8.615850e-47 |
| Msa0090080 | Msa1250790 | 0.800853 | 1.185756e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090080 | MtrunA17_Chr1g0209711 | 98.358 | 731 | 11 | 1 | 1 | 730 | 1 | 731 | 0.0 | 1491 |
| Msa0090080 | MtrunA17_Chr6g0462181 | 34.576 | 590 | 350 | 8 | 14 | 594 | 102 | 664 | 1.02e-102 | 330 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0090080 | AT2G18220.1 | 63.775 | 657 | 215 | 5 | 49 | 689 | 63 | 712 | 0.0 | 844 |
| Msa0090080 | AT3G55510.1 | 32.957 | 531 | 345 | 6 | 72 | 595 | 63 | 589 | 8.26e-95 | 306 |
| Msa0090080 | AT3G55510.2 | 33.268 | 511 | 330 | 6 | 92 | 595 | 8 | 514 | 1.62e-93 | 301 |
Find 164 sgRNAs with CRISPR-Local
Find 373 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGGTGTCTCTTCATTTC+TGG | 0.080261 | 1_2:-71910603 | Msa0090080:intron |
| TGCCCCTGATATTTGTATTT+TGG | 0.125857 | 1_2:-71907596 | Msa0090080:three_prime_UTR |
| TGCATAGATGATTGCTTTAA+AGG | 0.165421 | 1_2:-71910505 | Msa0090080:CDS |
| TGCAAATCAATTAAAGAAAA+TGG | 0.219753 | 1_2:-71911432 | Msa0090080:CDS |
| AGAGCAATACTTGTCATTTC+CGG | 0.221748 | 1_2:+71908367 | None:intergenic |
| ACCAGTATCTATGCTCCTTT+TGG | 0.248004 | 1_2:-71909748 | Msa0090080:CDS |
| GAGAATTCAATTTCAATATC+AGG | 0.300343 | 1_2:-71907652 | Msa0090080:three_prime_UTR |
| TTGTTGAAGCTTCCTGCTTC+TGG | 0.303506 | 1_2:-71911243 | Msa0090080:CDS |
| GTTTCAACACAAATTGATAA+AGG | 0.306891 | 1_2:-71913473 | Msa0090080:intron |
| TCAGGTGTCTCTTCATTTCT+GGG | 0.315570 | 1_2:-71910602 | Msa0090080:intron |
| CAGTCCAAAATACAAATATC+AGG | 0.318036 | 1_2:+71907592 | None:intergenic |
| GAGTTACTCTGTTGGGTTCA+TGG | 0.318367 | 1_2:-71909475 | Msa0090080:CDS |
| TAAAGTTATAACCACTTCTA+TGG | 0.321812 | 1_2:-71911466 | Msa0090080:CDS |
| AAAATATTCTTCATTGTTGT+TGG | 0.346316 | 1_2:-71911073 | Msa0090080:CDS |
| TCTCTTCATTTCTGGGGTAC+TGG | 0.358919 | 1_2:-71910595 | Msa0090080:CDS |
| ACGAATATGTTTAAGTTTCA+CGG | 0.360986 | 1_2:+71910441 | None:intergenic |
| AGTTCCATCCACGTTCTCTT+TGG | 0.366087 | 1_2:+71908415 | None:intergenic |
| TCATTAACTCTCTTGAGCTT+TGG | 0.367280 | 1_2:-71909944 | Msa0090080:CDS |
| ACAAAACAATGGAGGACTTA+TGG | 0.369094 | 1_2:-71911186 | Msa0090080:CDS |
| AGACAAAGCATAAAACAAAA+AGG | 0.374855 | 1_2:-71908019 | Msa0090080:CDS |
| CTGTCCTAAAAGCCCTCATC+AGG | 0.374975 | 1_2:+71911388 | None:intergenic |
| GAGCAATACTTGTCATTTCC+GGG | 0.375130 | 1_2:+71908368 | None:intergenic |
| GATGATGCCGCAGGATCATT+AGG | 0.378915 | 1_2:+71909199 | None:intergenic |
| CACTGTGGAGTTACTCTGTT+GGG | 0.380617 | 1_2:-71909482 | Msa0090080:CDS |
| CAAGGTAGGACTTCACAATA+TGG | 0.381844 | 1_2:+71911163 | None:intergenic |
| AAAATTTCCAGTGTTCTTGT+TGG | 0.383029 | 1_2:-71908509 | Msa0090080:intron |
| GTACCTTGATATATTTCCTT+AGG | 0.386131 | 1_2:+71911034 | None:intergenic |
| ATATCAGGGGCAACTTGGTC+TGG | 0.392103 | 1_2:+71907607 | None:intergenic |
| CAGCTAGGTACTTTCCCCTT+AGG | 0.392908 | 1_2:-71909824 | Msa0090080:CDS |
| CTTTGCCAACGCCTCCTGTA+GGG | 0.396984 | 1_2:+71909694 | None:intergenic |
| CATTTCTGGGGTACTGGTGG+AGG | 0.417756 | 1_2:-71910589 | Msa0090080:CDS |
| TCTTCGAAACCTTTCAACTT+TGG | 0.426560 | 1_2:+71909404 | None:intergenic |
| GCAGAAGGGCTGTCGCTTGA+AGG | 0.432094 | 1_2:+71908092 | None:intergenic |
| TACAAATATCAGGGGCAACT+TGG | 0.432308 | 1_2:+71907602 | None:intergenic |
| AACTGCGTCATTGAACTTCT+CGG | 0.432785 | 1_2:-71910409 | Msa0090080:CDS |
| GTTGACTGTACTTAATGAAA+TGG | 0.436589 | 1_2:-71911283 | Msa0090080:CDS |
| GTTTCACGGCATTTACGAAA+TGG | 0.440988 | 1_2:+71910455 | None:intergenic |
| GCAAATCAATTAAAGAAAAT+GGG | 0.446925 | 1_2:-71911431 | Msa0090080:CDS |
| CCCTTAGGTTGAGATGTATC+CGG | 0.448152 | 1_2:-71909809 | Msa0090080:CDS |
| TAGATACTGGTACAAAAGAA+TGG | 0.450220 | 1_2:+71909760 | None:intergenic |
| TTTAGGACAGCATGCCACTA+TGG | 0.450538 | 1_2:-71911375 | Msa0090080:CDS |
| TCACTGAACTTAAGCAGATC+CGG | 0.454118 | 1_2:+71912621 | None:intergenic |
| GTCAATAATCTTTACTTCCA+AGG | 0.454126 | 1_2:+71907834 | None:intergenic |
| TGATTTACGCAGCATATTGA+AGG | 0.459394 | 1_2:-71909667 | Msa0090080:intron |
| TTGTGCATCTGTATTGGATC+TGG | 0.460491 | 1_2:-71910529 | Msa0090080:CDS |
| CAGCAATCTGGTTCAACATC+CGG | 0.468912 | 1_2:+71909790 | None:intergenic |
| CGCAGGATCATTAGGTAGAA+AGG | 0.471731 | 1_2:+71909207 | None:intergenic |
| TCAAGCGACAGCCCTTCTGC+CGG | 0.472007 | 1_2:-71908089 | Msa0090080:CDS |
| AGGAATAAATCTCACACCTA+AGG | 0.472641 | 1_2:-71907990 | Msa0090080:exon |
| AAGTTGCGCAACCTCACAAT+TGG | 0.474304 | 1_2:+71909438 | None:intergenic |
| TCCAAAAGGAGCATAGATAC+TGG | 0.475479 | 1_2:+71909747 | None:intergenic |
| CTTGTCATTTCCGGGTAACC+AGG | 0.475649 | 1_2:+71908376 | None:intergenic |
| CCACTTCTATGGTTGATTTG+TGG | 0.479032 | 1_2:-71911455 | Msa0090080:CDS |
| CTTCATTTCTGGGGTACTGG+TGG | 0.480769 | 1_2:-71910592 | Msa0090080:CDS |
| TGCGGTTCGTTCCCTGATGA+GGG | 0.483874 | 1_2:-71911400 | Msa0090080:CDS |
| ATGAATAGACACGAAACAAC+AGG | 0.485209 | 1_2:+71910559 | None:intergenic |
| AATGGGTAGAAGCAGCAATC+TGG | 0.490303 | 1_2:+71909778 | None:intergenic |
| TGATGATGTTGTGGAGGACT+TGG | 0.492880 | 1_2:-71908144 | Msa0090080:CDS |
| TGGAAGAAAAGAGATCATAA+TGG | 0.493687 | 1_2:-71911220 | Msa0090080:CDS |
| TGTTTACTGTTCAATTGTCA+AGG | 0.495153 | 1_2:-71907773 | Msa0090080:three_prime_UTR |
| ATGCGGTTCGTTCCCTGATG+AGG | 0.495163 | 1_2:-71911401 | Msa0090080:CDS |
| AAAAGTTCGAATAGAGATAG+AGG | 0.498396 | 1_2:+71907913 | None:intergenic |
| AAGTGCATCCCTTAAAATCA+TGG | 0.500234 | 1_2:+71910333 | None:intergenic |
| AGAGAGTTGTGCATCTGTAT+TGG | 0.501253 | 1_2:-71910535 | Msa0090080:CDS |
| CAAGCGACAGCCCTTCTGCC+GGG | 0.504148 | 1_2:-71908088 | Msa0090080:CDS |
| GCTCCTAAGGAAATATATCA+AGG | 0.505109 | 1_2:-71911037 | Msa0090080:intron |
| TCCGGATACATCTCAACCTA+AGG | 0.506348 | 1_2:+71909808 | None:intergenic |
| CCATCGTGTTGCAATGAAAA+CGG | 0.507192 | 1_2:+71913525 | None:intergenic |
| CTGCTGCATTTAGCTCATCC+TGG | 0.510196 | 1_2:-71908394 | Msa0090080:CDS |
| AAAAGCGGCGGTGAAGGAAA+TGG | 0.511812 | 1_2:-71913495 | Msa0090080:CDS |
| GCAAATTGACCAAAGTTGAA+AGG | 0.512230 | 1_2:-71909413 | Msa0090080:CDS |
| ACGACTCATTAAAGGAATCC+AGG | 0.512258 | 1_2:-71908620 | Msa0090080:intron |
| TTGAAGCTTCCTGCTTCTGG+TGG | 0.513192 | 1_2:-71911240 | Msa0090080:CDS |
| CAACAGCCTACTGAACCAAA+AGG | 0.514963 | 1_2:-71908206 | Msa0090080:CDS |
| TTTGCCAACGCCTCCTGTAG+GGG | 0.515868 | 1_2:+71909695 | None:intergenic |
| AGATACTGGTACAAAAGAAT+GGG | 0.517124 | 1_2:+71909761 | None:intergenic |
| AAGAAGATATAGAGATTGCA+AGG | 0.517201 | 1_2:+71907950 | None:intergenic |
| GCTTTGCCAACGCCTCCTGT+AGG | 0.518176 | 1_2:+71909693 | None:intergenic |
| TTTCATTGCAACACGATGGT+TGG | 0.518623 | 1_2:-71913521 | Msa0090080:exon |
| CTCCACAACATCATCATCAA+TGG | 0.522343 | 1_2:+71908151 | None:intergenic |
| TTCTGTGGTTGAAGAACTTG+CGG | 0.526193 | 1_2:-71909514 | Msa0090080:CDS |
| TGGGGATGTTGAAGTTGAAG+AGG | 0.526374 | 1_2:+71913592 | None:intergenic |
| GTGGATGATGACATGGAAGA+TGG | 0.527004 | 1_2:-71911555 | Msa0090080:CDS |
| ATTGACATATCTAAATGTAA+TGG | 0.528122 | 1_2:-71907817 | Msa0090080:three_prime_UTR |
| TGGAAGAAAAGCGGCGGTGA+AGG | 0.528144 | 1_2:-71913501 | Msa0090080:CDS |
| CAGAGTAACTCCACAGTGCT+AGG | 0.529878 | 1_2:+71909487 | None:intergenic |
| GATCTCTTCAGCGTGTAAGC+TGG | 0.530360 | 1_2:-71907697 | Msa0090080:three_prime_UTR |
| AATGCCCGTGTCTTAAGAGT+TGG | 0.530371 | 1_2:+71909555 | None:intergenic |
| AGTCCAAAATACAAATATCA+GGG | 0.533063 | 1_2:+71907593 | None:intergenic |
| GAAATGGCAATTCAAAACAT+AGG | 0.534559 | 1_2:+71910471 | None:intergenic |
| CAGTCATTTGATTCAAAATG+TGG | 0.535572 | 1_2:+71911130 | None:intergenic |
| GTTTACTGTTCAATTGTCAA+GGG | 0.539017 | 1_2:-71907772 | Msa0090080:three_prime_UTR |
| GGAGGATACTAAAGAGAATG+AGG | 0.540305 | 1_2:-71908441 | Msa0090080:CDS |
| CAGGTGTCTCTTCATTTCTG+GGG | 0.543367 | 1_2:-71910601 | Msa0090080:CDS |
| CCTAGCTGTGGGAACTAGAC+GGG | 0.544301 | 1_2:+71909839 | None:intergenic |
| GCACTGTGGAGTTACTCTGT+TGG | 0.548474 | 1_2:-71909483 | Msa0090080:CDS |
| GATTGAAGCAAAGCAACATA+AGG | 0.549356 | 1_2:-71913303 | Msa0090080:CDS |
| TTTAGCTCATCCTGGTTACC+CGG | 0.550270 | 1_2:-71908386 | Msa0090080:CDS |
| GCAGTAGATTAACGTGCGGT+GGG | 0.554065 | 1_2:-71913633 | Msa0090080:five_prime_UTR |
| ATATATTTCCTTAGGAGCGA+AGG | 0.556004 | 1_2:+71911042 | None:intergenic |
| TCTCATCATCATCACCATAG+TGG | 0.557196 | 1_2:+71911361 | None:intergenic |
| CACTGAACTTAAGCAGATCC+GGG | 0.560310 | 1_2:+71912622 | None:intergenic |
| TGATATCATTTACTTTACAT+CGG | 0.560340 | 1_2:-71911098 | Msa0090080:CDS |
| TCATCTCCAGCATATCCAAA+AGG | 0.562573 | 1_2:+71909733 | None:intergenic |
| CCGGATACATCTCAACCTAA+GGG | 0.564014 | 1_2:+71909809 | None:intergenic |
| ATATTAGAGATTAATGTGGA+TGG | 0.567480 | 1_2:-71913371 | Msa0090080:intron |
| TTGCCAACGCCTCCTGTAGG+GGG | 0.569919 | 1_2:+71909696 | None:intergenic |
| CTACTGAACCAAAAGGAAAG+AGG | 0.572500 | 1_2:-71908199 | Msa0090080:CDS |
| TGCCATTGATGATGATGTTG+TGG | 0.573586 | 1_2:-71908153 | Msa0090080:CDS |
| GGAATAAATCTCACACCTAA+GGG | 0.576466 | 1_2:-71907989 | Msa0090080:exon |
| GATGCCAAAGAGAACGTGGA+TGG | 0.579919 | 1_2:-71908419 | Msa0090080:CDS |
| AGCAGTAGATTAACGTGCGG+TGG | 0.581881 | 1_2:-71913634 | Msa0090080:five_prime_UTR |
| AAAGGTTTCGAAGAGAAATG+AGG | 0.583015 | 1_2:-71909395 | Msa0090080:CDS |
| ACTGTACTTAATGAAATGGA+TGG | 0.588834 | 1_2:-71911279 | Msa0090080:CDS |
| TAAGACACGGGCATTTCAAG+AGG | 0.589841 | 1_2:-71909547 | Msa0090080:CDS |
| CTTTGCTTCAATCACAACCG+TGG | 0.591835 | 1_2:+71913313 | None:intergenic |
| AAATGTGGAGAGCATTTCCA+AGG | 0.591878 | 1_2:+71911145 | None:intergenic |
| CATGGAAGATGGAGAACCAC+AGG | 0.594124 | 1_2:-71911544 | Msa0090080:CDS |
| GATTATATTAGAGATTAATG+TGG | 0.595537 | 1_2:-71913375 | Msa0090080:intron |
| CATATTGTGAAGTCCTACCT+TGG | 0.595814 | 1_2:-71911162 | Msa0090080:CDS |
| TCAAGAAAAGATGATGCCGC+AGG | 0.596185 | 1_2:+71909190 | None:intergenic |
| GACATATCTAAATGTAATGG+TGG | 0.598286 | 1_2:-71907814 | Msa0090080:three_prime_UTR |
| AAGGGGAAAGTACCTAGCTG+TGG | 0.600642 | 1_2:+71909827 | None:intergenic |
| CCACAAATCAACCATAGAAG+TGG | 0.600691 | 1_2:+71911455 | None:intergenic |
| TGAGAAGGCTATTGAGCATG+AGG | 0.603012 | 1_2:-71911517 | Msa0090080:CDS |
| CTTTCTACCTAATGATCCTG+CGG | 0.603597 | 1_2:-71909206 | Msa0090080:CDS |
| GTGGAGAGCATTTCCAAGGT+AGG | 0.605480 | 1_2:+71911149 | None:intergenic |
| TGAGCATGAGGTTCAAGCAA+AGG | 0.611999 | 1_2:-71911505 | Msa0090080:CDS |
| AGAACCACAGGTAGATGAGA+AGG | 0.612954 | 1_2:-71911532 | Msa0090080:CDS |
| ACCTAGCTGTGGGAACTAGA+CGG | 0.614017 | 1_2:+71909838 | None:intergenic |
| TCTTCAGCGTGTAAGCTGGT+AGG | 0.614832 | 1_2:-71907693 | Msa0090080:three_prime_UTR |
| ATACTTTGATAGTGCACTAG+AGG | 0.618108 | 1_2:+71908677 | None:intergenic |
| ATAGCCTTCTCATCTACCTG+TGG | 0.620098 | 1_2:+71911528 | None:intergenic |
| TCAGGGGCAACTTGGTCTGG+AGG | 0.620373 | 1_2:+71907610 | None:intergenic |
| AGAATCAGCAAGTGATGAGG+AGG | 0.621827 | 1_2:-71908459 | Msa0090080:CDS |
| GCAAGCCAACTCTTAAGACA+CGG | 0.624117 | 1_2:-71909560 | Msa0090080:CDS |
| CAACTGTCGAATGAAAATGA+AGG | 0.625145 | 1_2:+71910357 | None:intergenic |
| ATTTGATGACCACAAAACAA+TGG | 0.630871 | 1_2:-71911197 | Msa0090080:CDS |
| TGAAGAATCAGCAAGTGATG+AGG | 0.631498 | 1_2:-71908462 | Msa0090080:CDS |
| CGTCATTGAACTTCTCGGAG+TGG | 0.634980 | 1_2:-71910404 | Msa0090080:CDS |
| AGGGGAAAGTACCTAGCTGT+GGG | 0.635817 | 1_2:+71909828 | None:intergenic |
| CCCGTCTAGTTCCCACAGCT+AGG | 0.637534 | 1_2:-71909839 | Msa0090080:CDS |
| AAGGCGTGTTGATATGCAGT+CGG | 0.638450 | 1_2:+71910376 | None:intergenic |
| GGAAGATGTGGATGATGACA+TGG | 0.639734 | 1_2:-71911562 | Msa0090080:CDS |
| CAGATTGTGAACTATAAGCA+CGG | 0.640362 | 1_2:+71909910 | None:intergenic |
| GTCCAAAATACAAATATCAG+GGG | 0.644715 | 1_2:+71907594 | None:intergenic |
| TGAGGATGCCAAAGAGAACG+TGG | 0.646565 | 1_2:-71908423 | Msa0090080:CDS |
| CACGATGGTTGGAAGAAAAG+CGG | 0.651121 | 1_2:-71913510 | Msa0090080:exon |
| ATATCTAAATGTAATGGTGG+CGG | 0.651646 | 1_2:-71907811 | Msa0090080:three_prime_UTR |
| AGAAAATGGGAGCTTAAATG+CGG | 0.652168 | 1_2:-71911418 | Msa0090080:CDS |
| CAAGCCAACTCTTAAGACAC+GGG | 0.654132 | 1_2:-71909559 | Msa0090080:CDS |
| AATAGAAAATCTTCAGCACA+AGG | 0.655625 | 1_2:-71913276 | Msa0090080:intron |
| TAGACACGAAACAACAGGAA+GGG | 0.657156 | 1_2:+71910564 | None:intergenic |
| CGGATACATCTCAACCTAAG+GGG | 0.658910 | 1_2:+71909810 | None:intergenic |
| CATTGATGATGATGTTGTGG+AGG | 0.661802 | 1_2:-71908150 | Msa0090080:CDS |
| TGATGACCACAAAACAATGG+AGG | 0.670885 | 1_2:-71911194 | Msa0090080:CDS |
| AATGAGGCAGCTTATTCGCG+AGG | 0.672768 | 1_2:-71909379 | Msa0090080:intron |
| AGATGAATGATGATCAACAT+CGG | 0.678740 | 1_2:+71908058 | None:intergenic |
| TGTCCTAAAAGCCCTCATCA+GGG | 0.678828 | 1_2:+71911389 | None:intergenic |
| GTACTTGAAAGAGAATGACC+CGG | 0.684135 | 1_2:-71912640 | Msa0090080:CDS |
| ATAGACACGAAACAACAGGA+AGG | 0.702686 | 1_2:+71910563 | None:intergenic |
| TTGCGGAACACCTAGCACTG+TGG | 0.724336 | 1_2:-71909497 | Msa0090080:CDS |
| GATGGTTGGAAGAAAAGCGG+CGG | 0.728380 | 1_2:-71913507 | Msa0090080:CDS |
| TGTAGCAGTAGATTAACGTG+CGG | 0.750832 | 1_2:-71913637 | Msa0090080:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTACCTTTTATATATTTAT+TGG | - | chr1_2:71908496-71908515 | Msa0090080:CDS | 10.0% |
| !!! | TTACCTTTTATATATTTATT+GGG | - | chr1_2:71908497-71908516 | Msa0090080:CDS | 10.0% |
| !!! | TTTTTGACAATTTTATTTTA+TGG | - | chr1_2:71911184-71911203 | Msa0090080:CDS | 10.0% |
| !! | AAACTTATATTTAGCTATTA+AGG | + | chr1_2:71908271-71908290 | None:intergenic | 15.0% |
| !!! | AAATTTTCTATCTTGATTAA+AGG | + | chr1_2:71909370-71909389 | None:intergenic | 15.0% |
| !!! | TTAATCAAGATAGAAAATTT+TGG | - | chr1_2:71909370-71909389 | Msa0090080:intron | 15.0% |
| !! | AAATTAAGAATAGTATCATT+CGG | - | chr1_2:71910439-71910458 | Msa0090080:CDS | 15.0% |
| !! | TGATAAAAGTAAAACATAAA+AGG | + | chr1_2:71911891-71911910 | None:intergenic | 15.0% |
| !!! | TTATGTTTTACTTTTATCAT+TGG | - | chr1_2:71911892-71911911 | Msa0090080:intron | 15.0% |
| !! | TAAAATAAAGGAAAAGAAAA+TGG | + | chr1_2:71912390-71912409 | None:intergenic | 15.0% |
| !! | CACTTGATATAATAAAATAA+AGG | + | chr1_2:71912402-71912421 | None:intergenic | 15.0% |
| !! | TACAATTCTCAAATATAAAT+GGG | + | chr1_2:71912485-71912504 | None:intergenic | 15.0% |
| !! | TTACAATTCTCAAATATAAA+TGG | + | chr1_2:71912486-71912505 | None:intergenic | 15.0% |
| !! | GATTATATTAGAGATTAATG+TGG | - | chr1_2:71907846-71907865 | Msa0090080:three_prime_UTR | 20.0% |
| !! | ACAATGTAATGTAATGTAAT+GGG | + | chr1_2:71907976-71907995 | None:intergenic | 20.0% |
| !! | AACAATGTAATGTAATGTAA+TGG | + | chr1_2:71907977-71907996 | None:intergenic | 20.0% |
| !! | TAGCCCAATAAATATATAAA+AGG | + | chr1_2:71908503-71908522 | None:intergenic | 20.0% |
| !! | TACATTAATTGAGATGAATA+TGG | - | chr1_2:71908688-71908707 | Msa0090080:CDS | 20.0% |
| !!! | ACTTTTGTTTGTTTTGTATT+AGG | - | chr1_2:71908854-71908873 | Msa0090080:intron | 20.0% |
| !! | AAAAAGGAACAAGAAATATT+GGG | + | chr1_2:71908918-71908937 | None:intergenic | 20.0% |
| !! | AAAAAAGGAACAAGAAATAT+TGG | + | chr1_2:71908919-71908938 | None:intergenic | 20.0% |
| !! | AAAATTAAATCTGTAGTGAT+TGG | + | chr1_2:71909184-71909203 | None:intergenic | 20.0% |
| !!! | TTTGTATTTTTTAGACCTAT+AGG | - | chr1_2:71909216-71909235 | Msa0090080:CDS | 20.0% |
| !! | TATATAACATAACAGCAAAA+AGG | + | chr1_2:71909459-71909478 | None:intergenic | 20.0% |
| !!! | TTTTTGCTGTTATGTTATAT+AGG | - | chr1_2:71909458-71909477 | Msa0090080:CDS | 20.0% |
| !! | TGCAAATCAATTAAAGAAAA+TGG | - | chr1_2:71909789-71909808 | Msa0090080:CDS | 20.0% |
| !! | GCAAATCAATTAAAGAAAAT+GGG | - | chr1_2:71909790-71909809 | Msa0090080:CDS | 20.0% |
| !! | TGATATCATTTACTTTACAT+CGG | - | chr1_2:71910123-71910142 | Msa0090080:intron | 20.0% |
| !! | AAAATATTCTTCATTGTTGT+TGG | - | chr1_2:71910148-71910167 | Msa0090080:intron | 20.0% |
| !! | TGATTAAAAAGCTTAATAGA+TGG | - | chr1_2:71910349-71910368 | Msa0090080:CDS | 20.0% |
| !!! | AACTAAATTTTTCTGAAATC+TGG | - | chr1_2:71910381-71910400 | Msa0090080:CDS | 20.0% |
| !! | TTAACATATGTCTATTCATT+TGG | - | chr1_2:71910572-71910591 | Msa0090080:CDS | 20.0% |
| !! | AGTAAACAAATGAATGAAAA+AGG | + | chr1_2:71912133-71912152 | None:intergenic | 20.0% |
| !! | TATAGAAGTTTATTTGCTTA+AGG | + | chr1_2:71912222-71912241 | None:intergenic | 20.0% |
| !! | TTAAGCAAATAAACTTCTAT+AGG | - | chr1_2:71912221-71912240 | Msa0090080:intron | 20.0% |
| !!! | GCTATTAAGTTATTTCATTT+TGG | - | chr1_2:71912285-71912304 | Msa0090080:intron | 20.0% |
| !!! | TTCTTTTTACTTTTTATCTG+AGG | - | chr1_2:71912969-71912988 | Msa0090080:intron | 20.0% |
| !! | ATAAAACAAAAAGGTTGAAA+AGG | - | chr1_2:71913211-71913230 | Msa0090080:intron | 20.0% |
| !!! | AATTGTTTTCTATTTTACCT+TGG | - | chr1_2:71913370-71913389 | Msa0090080:intron | 20.0% |
| !! | ATTGACATATCTAAATGTAA+TGG | - | chr1_2:71913404-71913423 | Msa0090080:intron | 20.0% |
| !!! | CATCATATAACTTTTGTTTT+TGG | + | chr1_2:71913505-71913524 | None:intergenic | 20.0% |
| ! | AGAAAGATGAAAAAGAATTG+GGG | + | chr1_2:71907650-71907669 | None:intergenic | 25.0% |
| ! | CAGAAAGATGAAAAAGAATT+GGG | + | chr1_2:71907651-71907670 | None:intergenic | 25.0% |
| ! | GTTTCAACACAAATTGATAA+AGG | - | chr1_2:71907748-71907767 | Msa0090080:three_prime_UTR | 25.0% |
| ! | ATATTAGAGATTAATGTGGA+TGG | - | chr1_2:71907850-71907869 | Msa0090080:three_prime_UTR | 25.0% |
| !!! | TTAAATGTCTGAGCTATTTT+CGG | - | chr1_2:71908104-71908123 | Msa0090080:CDS | 25.0% |
| !!! | AGAATTTTTTTCCCATATCT+AGG | + | chr1_2:71908788-71908807 | None:intergenic | 25.0% |
| !!! | CTTTTTCGGATGAAAAAAAA+AGG | + | chr1_2:71908934-71908953 | None:intergenic | 25.0% |
| !!! | CTTTTTTTTTCATCCGAAAA+AGG | - | chr1_2:71908932-71908951 | Msa0090080:intron | 25.0% |
| !! | TTCCATTTTGTGTTCATTAT+TGG | - | chr1_2:71909151-71909170 | Msa0090080:intron | 25.0% |
| ! | TACCAATAATGAACACAAAA+TGG | + | chr1_2:71909156-71909175 | None:intergenic | 25.0% |
| ! | CTAAAAGATTTATAGCCTAT+AGG | + | chr1_2:71909234-71909253 | None:intergenic | 25.0% |
| !! | CTATAGGCTATAAATCTTTT+AGG | - | chr1_2:71909232-71909251 | Msa0090080:CDS | 25.0% |
| !!! | GCTATAAATCTTTTAGGTTA+AGG | - | chr1_2:71909238-71909257 | Msa0090080:CDS | 25.0% |
| !!! | AATCTTTTAGGTTAAGGTTA+TGG | - | chr1_2:71909244-71909263 | Msa0090080:CDS | 25.0% |
| ! | TCACTTTCATCAACTATATT+TGG | - | chr1_2:71909484-71909503 | Msa0090080:CDS | 25.0% |
| ! | TAAAGTTATAACCACTTCTA+TGG | - | chr1_2:71909755-71909774 | Msa0090080:CDS | 25.0% |
| !!! | CATTAGTACTTTAAAGTTTG+TGG | - | chr1_2:71910262-71910281 | Msa0090080:intron | 25.0% |
| !! | TTCTTAATTTTGTTCGAGTA+CGG | + | chr1_2:71910429-71910448 | None:intergenic | 25.0% |
| ! | ACTTTCTTGTTGAAATTATC+AGG | - | chr1_2:71910601-71910620 | Msa0090080:CDS | 25.0% |
| !! | ACGAATATGTTTAAGTTTCA+CGG | + | chr1_2:71910783-71910802 | None:intergenic | 25.0% |
| ! | TGCACTTAATACAAAAACTA+AGG | - | chr1_2:71910904-71910923 | Msa0090080:intron | 25.0% |
| ! | TACTCATTACTAATGAGATA+CGG | + | chr1_2:71911075-71911094 | None:intergenic | 25.0% |
| ! | ATCTCATTAGTAATGAGTAA+AGG | - | chr1_2:71911076-71911095 | Msa0090080:CDS | 25.0% |
| ! | CGAATAAAACAAATCTATCA+AGG | + | chr1_2:71911119-71911138 | None:intergenic | 25.0% |
| !!! | TTGTTTTATTCGTGTTTGAT+TGG | - | chr1_2:71911127-71911146 | Msa0090080:CDS | 25.0% |
| !!! | AGATTTTCTCTTTACTTTTG+AGG | - | chr1_2:71912063-71912082 | Msa0090080:intron | 25.0% |
| !! | AAGGAAAAAAGTTTTTATGC+AGG | + | chr1_2:71912203-71912222 | None:intergenic | 25.0% |
| !!! | TTCATTTTGGTCTATATATC+TGG | - | chr1_2:71912298-71912317 | Msa0090080:intron | 25.0% |
| !! | TTTAAAGTAAAGTGACATTG+AGG | + | chr1_2:71912455-71912474 | None:intergenic | 25.0% |
| ! | ACAAAAAAACGACTCATTAA+AGG | - | chr1_2:71912593-71912612 | Msa0090080:intron | 25.0% |
| !! | GTGAATTTAAAATTCAAACC+TGG | + | chr1_2:71912622-71912641 | None:intergenic | 25.0% |
| ! | AGACAAAGCATAAAACAAAA+AGG | - | chr1_2:71913202-71913221 | Msa0090080:intron | 25.0% |
| !! | ATCTCTATTCGAACTTTTAT+TGG | - | chr1_2:71913313-71913332 | Msa0090080:CDS | 25.0% |
| !! | TCTCTATTCGAACTTTTATT+GGG | - | chr1_2:71913314-71913333 | Msa0090080:CDS | 25.0% |
| ! | GAGAATTCAATTTCAATATC+AGG | - | chr1_2:71913569-71913588 | Msa0090080:five_prime_UTR | 25.0% |
| ! | AGTCCAAAATACAAATATCA+GGG | + | chr1_2:71913631-71913650 | None:intergenic | 25.0% |
| GCAGAAAGATGAAAAAGAAT+TGG | + | chr1_2:71907652-71907671 | None:intergenic | 30.0% | |
| AAAGAGCAAGAAAAATTCCA+CGG | - | chr1_2:71907891-71907910 | Msa0090080:three_prime_UTR | 30.0% | |
| AATAGAAAATCTTCAGCACA+AGG | - | chr1_2:71907945-71907964 | Msa0090080:three_prime_UTR | 30.0% | |
| ! | CTTTGCTTGTTCTTATTTGA+AGG | - | chr1_2:71908031-71908050 | Msa0090080:CDS | 30.0% |
| TTCAAGCAATGTTTATCTCT+AGG | - | chr1_2:71908306-71908325 | Msa0090080:intron | 30.0% | |
| GTATGTGTGAAATTTGAACT+AGG | - | chr1_2:71908457-71908476 | Msa0090080:CDS | 30.0% | |
| ! | TTAACAAACTTTTCCATTGC+AGG | - | chr1_2:71908542-71908561 | Msa0090080:intron | 30.0% |
| AAATACACATCTCACATCAA+TGG | + | chr1_2:71908731-71908750 | None:intergenic | 30.0% | |
| !!! | TTTTTTTCCCATATCTAGGA+TGG | + | chr1_2:71908784-71908803 | None:intergenic | 30.0% |
| ! | TGTTTTGTATTAGGAAGATG+TGG | - | chr1_2:71908863-71908882 | Msa0090080:intron | 30.0% |
| ! | GTTTTGTATTAGGAAGATGT+GGG | - | chr1_2:71908864-71908883 | Msa0090080:intron | 30.0% |
| CACAACGAAATGTAAATTCA+AGG | - | chr1_2:71909020-71909039 | Msa0090080:intron | 30.0% | |
| TTAAATCTGTAGTGATTGGT+GGG | + | chr1_2:71909180-71909199 | None:intergenic | 30.0% | |
| ATTAAATCTGTAGTGATTGG+TGG | + | chr1_2:71909181-71909200 | None:intergenic | 30.0% | |
| GTGTCTTCTCAAAATCTAAT+AGG | + | chr1_2:71909274-71909293 | None:intergenic | 30.0% | |
| !! | TTAGATTTTGAGAAGACACT+TGG | - | chr1_2:71909275-71909294 | Msa0090080:intron | 30.0% |
| !! | TAGATTTTGAGAAGACACTT+GGG | - | chr1_2:71909276-71909295 | Msa0090080:intron | 30.0% |
| AATCTCTTGTAAGCTATAGA+TGG | - | chr1_2:71909320-71909339 | Msa0090080:intron | 30.0% | |
| ATTTAGTAATGCACGCAAAT+AGG | + | chr1_2:71909574-71909593 | None:intergenic | 30.0% | |
| GTTGACTGTACTTAATGAAA+TGG | - | chr1_2:71909938-71909957 | Msa0090080:CDS | 30.0% | |
| ACTGTACTTAATGAAATGGA+TGG | - | chr1_2:71909942-71909961 | Msa0090080:CDS | 30.0% | |
| TGGAAGAAAAGAGATCATAA+TGG | - | chr1_2:71910001-71910020 | Msa0090080:intron | 30.0% | |
| ! | ATTTGATGACCACAAAACAA+TGG | - | chr1_2:71910024-71910043 | Msa0090080:intron | 30.0% |
| CAGTCATTTGATTCAAAATG+TGG | + | chr1_2:71910094-71910113 | None:intergenic | 30.0% | |
| GTACCTTGATATATTTCCTT+AGG | + | chr1_2:71910190-71910209 | None:intergenic | 30.0% | |
| TCAAGGTACAAATAGTTCAT+TGG | - | chr1_2:71910201-71910220 | Msa0090080:intron | 30.0% | |
| ! | TTTTGTAGTGAACAATGATG+AGG | + | chr1_2:71910230-71910249 | None:intergenic | 30.0% |
| ! | CCAGAAGTATATACTTACAA+GGG | + | chr1_2:71910493-71910512 | None:intergenic | 30.0% |
| ! | ACCAGAAGTATATACTTACA+AGG | + | chr1_2:71910494-71910513 | None:intergenic | 30.0% |
| ! | TTCTGGTAATGTGAATGAAA+AGG | - | chr1_2:71910507-71910526 | Msa0090080:CDS | 30.0% |
| TGCATAGATGATTGCTTTAA+AGG | - | chr1_2:71910716-71910735 | Msa0090080:intron | 30.0% | |
| GAAATGGCAATTCAAAACAT+AGG | + | chr1_2:71910753-71910772 | None:intergenic | 30.0% | |
| GATAGATCAATTGTTAGGAT+TGG | + | chr1_2:71911030-71911049 | None:intergenic | 30.0% | |
| ! | TTCGTCTGAATGTTTTCTTT+AGG | - | chr1_2:71911224-71911243 | Msa0090080:CDS | 30.0% |
| GGCTACTCCAAAAATTATTT+GGG | + | chr1_2:71911364-71911383 | None:intergenic | 30.0% | |
| AGATACTGGTACAAAAGAAT+GGG | + | chr1_2:71911463-71911482 | None:intergenic | 30.0% | |
| TAGATACTGGTACAAAAGAA+TGG | + | chr1_2:71911464-71911483 | None:intergenic | 30.0% | |
| ! | TGTCTTTTATTCCAATTGTG+AGG | - | chr1_2:71911772-71911791 | Msa0090080:intron | 30.0% |
| !! | AGTATTGATTGTTTCCTTGT+TGG | - | chr1_2:71912096-71912115 | Msa0090080:intron | 30.0% |
| !! | ACAGTCAACTTGATTTTGAT+AGG | - | chr1_2:71912506-71912525 | Msa0090080:intron | 30.0% |
| ! | TGATAATGATGTATGCATGT+TGG | + | chr1_2:71912669-71912688 | None:intergenic | 30.0% |
| AAAATTTCCAGTGTTCTTGT+TGG | - | chr1_2:71912712-71912731 | Msa0090080:intron | 30.0% | |
| AGATGAATGATGATCAACAT+CGG | + | chr1_2:71913166-71913185 | None:intergenic | 30.0% | |
| !! | TTGTTTTATGCTTTGTCTTG+CGG | + | chr1_2:71913200-71913219 | None:intergenic | 30.0% |
| AAGAAGATATAGAGATTGCA+AGG | + | chr1_2:71913274-71913293 | None:intergenic | 30.0% | |
| AAAAGTTCGAATAGAGATAG+AGG | + | chr1_2:71913311-71913330 | None:intergenic | 30.0% | |
| GTCAATAATCTTTACTTCCA+AGG | + | chr1_2:71913390-71913409 | None:intergenic | 30.0% | |
| GACATATCTAAATGTAATGG+TGG | - | chr1_2:71913407-71913426 | Msa0090080:intron | 30.0% | |
| ATATCTAAATGTAATGGTGG+CGG | - | chr1_2:71913410-71913429 | Msa0090080:intron | 30.0% | |
| TGTTTACTGTTCAATTGTCA+AGG | - | chr1_2:71913448-71913467 | Msa0090080:intron | 30.0% | |
| GTTTACTGTTCAATTGTCAA+GGG | - | chr1_2:71913449-71913468 | Msa0090080:intron | 30.0% | |
| GTCCAAAATACAAATATCAG+GGG | + | chr1_2:71913630-71913649 | None:intergenic | 30.0% | |
| CAGTCCAAAATACAAATATC+AGG | + | chr1_2:71913632-71913651 | None:intergenic | 30.0% | |
| GATTGAAGCAAAGCAACATA+AGG | - | chr1_2:71907918-71907937 | Msa0090080:three_prime_UTR | 35.0% | |
| TAGACATATTGCATGTCCAT+AGG | - | chr1_2:71908362-71908381 | Msa0090080:intron | 35.0% | |
| AGACATATTGCATGTCCATA+GGG | - | chr1_2:71908363-71908382 | Msa0090080:intron | 35.0% | |
| ACAAGTAAAGGTTTCAGTGA+AGG | - | chr1_2:71908401-71908420 | Msa0090080:CDS | 35.0% | |
| TGTGTGAAATTTGAACTAGG+TGG | - | chr1_2:71908460-71908479 | Msa0090080:CDS | 35.0% | |
| TTTATTGGGCTACATTCTGT+TGG | - | chr1_2:71908511-71908530 | Msa0090080:intron | 35.0% | |
| TAAAAATCTTCGTCCTGCAA+TGG | + | chr1_2:71908558-71908577 | None:intergenic | 35.0% | |
| TTCTAATGCCATCCTAGATA+TGG | - | chr1_2:71908773-71908792 | Msa0090080:intron | 35.0% | |
| TCTAATGCCATCCTAGATAT+GGG | - | chr1_2:71908774-71908793 | Msa0090080:intron | 35.0% | |
| AAATGCTAACATGTGCTCTA+AGG | - | chr1_2:71909044-71909063 | Msa0090080:intron | 35.0% | |
| AATGCTAACATGTGCTCTAA+GGG | - | chr1_2:71909045-71909064 | Msa0090080:intron | 35.0% | |
| !! | AGATTTTGAGAAGACACTTG+GGG | - | chr1_2:71909277-71909296 | Msa0090080:intron | 35.0% |
| ! | TTGTGTGTTTGCTGGTAAAT+TGG | - | chr1_2:71909400-71909419 | Msa0090080:CDS | 35.0% |
| ! | GTGCAGTGATCATAATTTGT+AGG | - | chr1_2:71909506-71909525 | Msa0090080:CDS | 35.0% |
| TGTAGGAAATCTCAAGAGAT+TGG | - | chr1_2:71909523-71909542 | Msa0090080:CDS | 35.0% | |
| ! | TTCTTTTATCCAGGAAGATG+TGG | - | chr1_2:71909647-71909666 | Msa0090080:intron | 35.0% |
| AGAAAATGGGAGCTTAAATG+CGG | - | chr1_2:71909803-71909822 | Msa0090080:CDS | 35.0% | |
| !! | ATAAGTCCTCCATTGTTTTG+TGG | + | chr1_2:71910036-71910055 | None:intergenic | 35.0% |
| ACAAAACAATGGAGGACTTA+TGG | - | chr1_2:71910035-71910054 | Msa0090080:intron | 35.0% | |
| ATATATTTCCTTAGGAGCGA+AGG | + | chr1_2:71910182-71910201 | None:intergenic | 35.0% | |
| GCTCCTAAGGAAATATATCA+AGG | - | chr1_2:71910184-71910203 | Msa0090080:intron | 35.0% | |
| TGAATATGTCTTCCAATGCT+TGG | - | chr1_2:71910293-71910312 | Msa0090080:intron | 35.0% | |
| CCCTTGTAAGTATATACTTC+TGG | - | chr1_2:71910490-71910509 | Msa0090080:CDS | 35.0% | |
| !! | AAGAACATTTGTGACTTGCT+AGG | - | chr1_2:71910540-71910559 | Msa0090080:CDS | 35.0% |
| ATGAATAGACACGAAACAAC+AGG | + | chr1_2:71910665-71910684 | None:intergenic | 35.0% | |
| CAACTGTCGAATGAAAATGA+AGG | + | chr1_2:71910867-71910886 | None:intergenic | 35.0% | |
| ! | CTTCATTTTCATTCGACAGT+TGG | - | chr1_2:71910865-71910884 | Msa0090080:intron | 35.0% |
| ! | ACAGTTGGCCATGATTTTAA+GGG | - | chr1_2:71910880-71910899 | Msa0090080:intron | 35.0% |
| AAGTGCATCCCTTAAAATCA+TGG | + | chr1_2:71910891-71910910 | None:intergenic | 35.0% | |
| TCTAACAGCAAAATGTTACG+AGG | + | chr1_2:71910984-71911003 | None:intergenic | 35.0% | |
| !!! | TCGTAACATTTTGCTGTTAG+AGG | - | chr1_2:71910983-71911002 | Msa0090080:intron | 35.0% |
| !!! | CGTAACATTTTGCTGTTAGA+GGG | - | chr1_2:71910984-71911003 | Msa0090080:intron | 35.0% |
| GTCAGGATAGATCAATTGTT+AGG | + | chr1_2:71911035-71911054 | None:intergenic | 35.0% | |
| CAAATCTATCAAGGAATGTC+TGG | + | chr1_2:71911110-71911129 | None:intergenic | 35.0% | |
| ! | CTTTTCGCAAGGTTTATGAA+TGG | - | chr1_2:71911250-71911269 | Msa0090080:CDS | 35.0% |
| TCATTAACTCTCTTGAGCTT+TGG | - | chr1_2:71911277-71911296 | Msa0090080:CDS | 35.0% | |
| CAGATTGTGAACTATAAGCA+CGG | + | chr1_2:71911314-71911333 | None:intergenic | 35.0% | |
| CCAAAAATTATTTGGGTCAG+TGG | + | chr1_2:71911357-71911376 | None:intergenic | 35.0% | |
| ! | CCACTGACCCAAATAATTTT+TGG | - | chr1_2:71911354-71911373 | Msa0090080:CDS | 35.0% |
| GGGCTACTCCAAAAATTATT+TGG | + | chr1_2:71911365-71911384 | None:intergenic | 35.0% | |
| TGATTTACGCAGCATATTGA+AGG | - | chr1_2:71911554-71911573 | Msa0090080:CDS | 35.0% | |
| !! | TATTGAAGGTACTCGTTACT+TGG | - | chr1_2:71911568-71911587 | Msa0090080:intron | 35.0% |
| ! | AAATCCACCTAACCTTTTAG+AGG | - | chr1_2:71911618-71911637 | Msa0090080:intron | 35.0% |
| ! | AAGGATACCTCTAAAAGGTT+AGG | + | chr1_2:71911628-71911647 | None:intergenic | 35.0% |
| TATGCAAGGATACCTCTAAA+AGG | + | chr1_2:71911633-71911652 | None:intergenic | 35.0% | |
| !! | TAGAGGTATCCTTGCATATT+AGG | - | chr1_2:71911635-71911654 | Msa0090080:intron | 35.0% |
| GCAAATTGACCAAAGTTGAA+AGG | - | chr1_2:71911808-71911827 | Msa0090080:intron | 35.0% | |
| TCTTCGAAACCTTTCAACTT+TGG | + | chr1_2:71911820-71911839 | None:intergenic | 35.0% | |
| AAAGGTTTCGAAGAGAAATG+AGG | - | chr1_2:71911826-71911845 | Msa0090080:intron | 35.0% | |
| ! | AATTTTCCACACTCAGATTG+AGG | - | chr1_2:71911952-71911971 | Msa0090080:intron | 35.0% |
| ATTGTTTCCTTGTTGGATGT+TGG | - | chr1_2:71912103-71912122 | Msa0090080:intron | 35.0% | |
| AGCTTGGAAGAATTGAAACA+TGG | + | chr1_2:71912172-71912191 | None:intergenic | 35.0% | |
| !!! | TTTTTTGTTTTGCTCTCTGG+CGG | + | chr1_2:71912581-71912600 | None:intergenic | 35.0% |
| !!! | CGTTTTTTTGTTTTGCTCTC+TGG | + | chr1_2:71912584-71912603 | None:intergenic | 35.0% |
| TAAATTCACCTCCATTCTCA+TGG | - | chr1_2:71912633-71912652 | Msa0090080:CDS | 35.0% | |
| TTCTTCATCACCAAAAACAG+AGG | + | chr1_2:71912746-71912765 | None:intergenic | 35.0% | |
| ! | AGAGCAATACTTGTCATTTC+CGG | + | chr1_2:71912857-71912876 | None:intergenic | 35.0% |
| !!! | TGCTTTTTCCTCTTTCCTTT+TGG | + | chr1_2:71913033-71913052 | None:intergenic | 35.0% |
| !!! | TTTGTCTTGCGGTTTTGTTT+TGG | + | chr1_2:71913189-71913208 | None:intergenic | 35.0% |
| AGGAATAAATCTCACACCTA+AGG | - | chr1_2:71913231-71913250 | Msa0090080:intron | 35.0% | |
| GGAATAAATCTCACACCTAA+GGG | - | chr1_2:71913232-71913251 | Msa0090080:intron | 35.0% | |
| !! | AGACATATCACTTTTCCCTT+AGG | + | chr1_2:71913250-71913269 | None:intergenic | 35.0% |
| !! | TTTTTGGCATATCGCTACAA+CGG | + | chr1_2:71913489-71913508 | None:intergenic | 35.0% |
| ! | TGCCCCTGATATTTGTATTT+TGG | - | chr1_2:71913625-71913644 | Msa0090080:five_prime_UTR | 35.0% |
| TGTAGCAGTAGATTAACGTG+CGG | - | chr1_2:71907584-71907603 | Msa0090080:three_prime_UTR | 40.0% | |
| CCATCGTGTTGCAATGAAAA+CGG | + | chr1_2:71907699-71907718 | None:intergenic | 40.0% | |
| TTTCATTGCAACACGATGGT+TGG | - | chr1_2:71907700-71907719 | Msa0090080:three_prime_UTR | 40.0% | |
| ACAAGCAAAGTTGCATACAC+AGG | + | chr1_2:71908021-71908040 | None:intergenic | 40.0% | |
| AGTAAGCTGCTTATCCAAAC+AGG | - | chr1_2:71908244-71908263 | Msa0090080:intron | 40.0% | |
| GTAAGCTGCTTATCCAAACA+GGG | - | chr1_2:71908245-71908264 | Msa0090080:intron | 40.0% | |
| TTAGCTATTAAGGCCCTGTT+TGG | + | chr1_2:71908261-71908280 | None:intergenic | 40.0% | |
| ACGTAGACGAAGACAAGTAA+AGG | - | chr1_2:71908389-71908408 | Msa0090080:CDS | 40.0% | |
| TGAACTAGGTGGTGATTGAT+AGG | - | chr1_2:71908471-71908490 | Msa0090080:CDS | 40.0% | |
| GAACTAGGTGGTGATTGATA+GGG | - | chr1_2:71908472-71908491 | Msa0090080:CDS | 40.0% | |
| GTACTTGAAAGAGAATGACC+CGG | - | chr1_2:71908581-71908600 | Msa0090080:intron | 40.0% | |
| TCACTGAACTTAAGCAGATC+CGG | + | chr1_2:71908603-71908622 | None:intergenic | 40.0% | |
| CTTAGCTACTAAGCTTGCAT+TGG | - | chr1_2:71908806-71908825 | Msa0090080:intron | 40.0% | |
| TCATTGCAGTGGCTAAATGA+TGG | - | chr1_2:71908955-71908974 | Msa0090080:intron | 40.0% | |
| CATTGCAGTGGCTAAATGAT+GGG | - | chr1_2:71908956-71908975 | Msa0090080:intron | 40.0% | |
| ! | TCCCTTTAGAGACATGTTTG+TGG | - | chr1_2:71908992-71909011 | Msa0090080:intron | 40.0% |
| GCCACAAACATGTCTCTAAA+GGG | + | chr1_2:71908996-71909015 | None:intergenic | 40.0% | |
| TGCCACAAACATGTCTCTAA+AGG | + | chr1_2:71908997-71909016 | None:intergenic | 40.0% | |
| TGCTGGTAAATTGGTTGAAG+AGG | - | chr1_2:71909409-71909428 | Msa0090080:CDS | 40.0% | |
| AATTGGTTGAAGAGGAATGC+CGG | - | chr1_2:71909417-71909436 | Msa0090080:CDS | 40.0% | |
| AGGAGCAATCTTGACAATAC+CGG | + | chr1_2:71909439-71909458 | None:intergenic | 40.0% | |
| ! | CTGTTTCGCTTCTTTTATCC+AGG | - | chr1_2:71909638-71909657 | Msa0090080:intron | 40.0% |
| CCACAAATCAACCATAGAAG+TGG | + | chr1_2:71909769-71909788 | None:intergenic | 40.0% | |
| !! | CCACTTCTATGGTTGATTTG+TGG | - | chr1_2:71909766-71909785 | Msa0090080:CDS | 40.0% |
| TCTCATCATCATCACCATAG+TGG | + | chr1_2:71909863-71909882 | None:intergenic | 40.0% | |
| TGATGACCACAAAACAATGG+AGG | - | chr1_2:71910027-71910046 | Msa0090080:intron | 40.0% | |
| CAAGGTAGGACTTCACAATA+TGG | + | chr1_2:71910061-71910080 | None:intergenic | 40.0% | |
| CATATTGTGAAGTCCTACCT+TGG | - | chr1_2:71910059-71910078 | Msa0090080:intron | 40.0% | |
| !! | AAATGTGGAGAGCATTTCCA+AGG | + | chr1_2:71910079-71910098 | None:intergenic | 40.0% |
| AATTACTGCACAAGACCGAA+TGG | + | chr1_2:71910330-71910349 | None:intergenic | 40.0% | |
| ATCAGGTGTCTCTTCATTTC+TGG | - | chr1_2:71910618-71910637 | Msa0090080:intron | 40.0% | |
| TCAGGTGTCTCTTCATTTCT+GGG | - | chr1_2:71910619-71910638 | Msa0090080:intron | 40.0% | |
| TAGACACGAAACAACAGGAA+GGG | + | chr1_2:71910660-71910679 | None:intergenic | 40.0% | |
| ATAGACACGAAACAACAGGA+AGG | + | chr1_2:71910661-71910680 | None:intergenic | 40.0% | |
| AGAGAGTTGTGCATCTGTAT+TGG | - | chr1_2:71910686-71910705 | Msa0090080:intron | 40.0% | |
| TTGTGCATCTGTATTGGATC+TGG | - | chr1_2:71910692-71910711 | Msa0090080:intron | 40.0% | |
| GTTTCACGGCATTTACGAAA+TGG | + | chr1_2:71910769-71910788 | None:intergenic | 40.0% | |
| AACTGCGTCATTGAACTTCT+CGG | - | chr1_2:71910812-71910831 | Msa0090080:intron | 40.0% | |
| ! | GACAGTTGGCCATGATTTTA+AGG | - | chr1_2:71910879-71910898 | Msa0090080:intron | 40.0% |
| !! | CAATTGTTAGGATTGGTTCC+AGG | + | chr1_2:71911023-71911042 | None:intergenic | 40.0% |
| AAGTGTCAAGCTCATAAGTC+AGG | + | chr1_2:71911052-71911071 | None:intergenic | 40.0% | |
| !! | TCTTTAGGAAGCTTTTCGCA+AGG | - | chr1_2:71911239-71911258 | Msa0090080:CDS | 40.0% |
| ! | ACCAGTATCTATGCTCCTTT+TGG | - | chr1_2:71911473-71911492 | Msa0090080:CDS | 40.0% |
| ! | TCCAAAAGGAGCATAGATAC+TGG | + | chr1_2:71911477-71911496 | None:intergenic | 40.0% |
| ! | TATGCTCCTTTTGGATATGC+TGG | - | chr1_2:71911482-71911501 | Msa0090080:CDS | 40.0% |
| TCATCTCCAGCATATCCAAA+AGG | + | chr1_2:71911491-71911510 | None:intergenic | 40.0% | |
| ! | GATACCTCTAAAAGGTTAGG+TGG | + | chr1_2:71911625-71911644 | None:intergenic | 40.0% |
| ! | GCTTGCTAACCTAATATGCA+AGG | + | chr1_2:71911647-71911666 | None:intergenic | 40.0% |
| !!! | AGAGGCTTGTGTTTTTTCTG+TGG | - | chr1_2:71911692-71911711 | Msa0090080:intron | 40.0% |
| TTCTGTGGTTGAAGAACTTG+CGG | - | chr1_2:71911707-71911726 | Msa0090080:intron | 40.0% | |
| ! | TTGGCATGCATCAGATTTTG+TGG | - | chr1_2:71911911-71911930 | Msa0090080:intron | 40.0% |
| ! | TGCGCTTTTCATTCACAAAC+TGG | + | chr1_2:71911985-71912004 | None:intergenic | 40.0% |
| CTTTCTACCTAATGATCCTG+CGG | - | chr1_2:71912015-71912034 | Msa0090080:intron | 40.0% | |
| GAAGAATTGAAACATGGAGC+AGG | + | chr1_2:71912166-71912185 | None:intergenic | 40.0% | |
| TCTGGCTAAACACTATCGTA+TGG | - | chr1_2:71912316-71912335 | Msa0090080:intron | 40.0% | |
| GCTAAACACTATCGTATGGT+GGG | - | chr1_2:71912320-71912339 | Msa0090080:intron | 40.0% | |
| CATTGAGGCGTGAAATAAGT+GGG | + | chr1_2:71912440-71912459 | None:intergenic | 40.0% | |
| ACATTGAGGCGTGAAATAAG+TGG | + | chr1_2:71912441-71912460 | None:intergenic | 40.0% | |
| ACGACTCATTAAAGGAATCC+AGG | - | chr1_2:71912601-71912620 | Msa0090080:intron | 40.0% | |
| ACAGTAATCCATGAGAATGG+AGG | + | chr1_2:71912644-71912663 | None:intergenic | 40.0% | |
| GACACAGTAATCCATGAGAA+TGG | + | chr1_2:71912647-71912666 | None:intergenic | 40.0% | |
| TTCTTCTCCAACAAGAACAC+TGG | + | chr1_2:71912722-71912741 | None:intergenic | 40.0% | |
| ! | GGAGAAGAATCCTCTGTTTT+TGG | - | chr1_2:71912733-71912752 | Msa0090080:intron | 40.0% |
| TGAAGAATCAGCAAGTGATG+AGG | - | chr1_2:71912759-71912778 | Msa0090080:intron | 40.0% | |
| GGAGGATACTAAAGAGAATG+AGG | - | chr1_2:71912780-71912799 | Msa0090080:intron | 40.0% | |
| ! | GAGCAATACTTGTCATTTCC+GGG | + | chr1_2:71912856-71912875 | None:intergenic | 40.0% |
| !!! | CTCTTTCCTTTTGGTTCAGT+AGG | + | chr1_2:71913024-71913043 | None:intergenic | 40.0% |
| CTACTGAACCAAAAGGAAAG+AGG | - | chr1_2:71913022-71913041 | Msa0090080:intron | 40.0% | |
| !! | TGCCATTGATGATGATGTTG+TGG | - | chr1_2:71913068-71913087 | Msa0090080:intron | 40.0% |
| CTCCACAACATCATCATCAA+TGG | + | chr1_2:71913073-71913092 | None:intergenic | 40.0% | |
| !! | CATTGATGATGATGTTGTGG+AGG | - | chr1_2:71913071-71913090 | Msa0090080:intron | 40.0% |
| ! | ATCAACATCGGCATTTTTCC+CGG | + | chr1_2:71913154-71913173 | None:intergenic | 40.0% |
| ! | TTTTGGCATATCGCTACAAC+GGG | + | chr1_2:71913488-71913507 | None:intergenic | 40.0% |
| TACAAATATCAGGGGCAACT+TGG | + | chr1_2:71913622-71913641 | None:intergenic | 40.0% | |
| TGGGGATGTTGAAGTTGAAG+AGG | + | chr1_2:71907632-71907651 | None:intergenic | 45.0% | |
| ! | CCGTTTTCATTGCAACACGA+TGG | - | chr1_2:71907696-71907715 | Msa0090080:three_prime_UTR | 45.0% |
| CACGATGGTTGGAAGAAAAG+CGG | - | chr1_2:71907711-71907730 | Msa0090080:three_prime_UTR | 45.0% | |
| CTTTGCTTCAATCACAACCG+TGG | + | chr1_2:71907911-71907930 | None:intergenic | 45.0% | |
| CACTGAACTTAAGCAGATCC+GGG | + | chr1_2:71908602-71908621 | None:intergenic | 45.0% | |
| TCCGAAAAAGGTCATTGCAG+TGG | - | chr1_2:71908944-71908963 | Msa0090080:intron | 45.0% | |
| ! | GCCACTGCAATGACCTTTTT+CGG | + | chr1_2:71908948-71908967 | None:intergenic | 45.0% |
| TGTCATCATCCACATCTTCC+TGG | + | chr1_2:71909659-71909678 | None:intergenic | 45.0% | |
| GGAAGATGTGGATGATGACA+TGG | - | chr1_2:71909659-71909678 | Msa0090080:intron | 45.0% | |
| GTGGATGATGACATGGAAGA+TGG | - | chr1_2:71909666-71909685 | Msa0090080:intron | 45.0% | |
| AGAACCACAGGTAGATGAGA+AGG | - | chr1_2:71909689-71909708 | Msa0090080:CDS | 45.0% | |
| ATAGCCTTCTCATCTACCTG+TGG | + | chr1_2:71909696-71909715 | None:intergenic | 45.0% | |
| TGAGAAGGCTATTGAGCATG+AGG | - | chr1_2:71909704-71909723 | Msa0090080:CDS | 45.0% | |
| TGAGCATGAGGTTCAAGCAA+AGG | - | chr1_2:71909716-71909735 | Msa0090080:CDS | 45.0% | |
| TGTCCTAAAAGCCCTCATCA+GGG | + | chr1_2:71909835-71909854 | None:intergenic | 45.0% | |
| ! | TTTAGGACAGCATGCCACTA+TGG | - | chr1_2:71909846-71909865 | Msa0090080:CDS | 45.0% |
| TTGTTGAAGCTTCCTGCTTC+TGG | - | chr1_2:71909978-71909997 | Msa0090080:CDS | 45.0% | |
| ! | TCTTTTCTTCCACCAGAAGC+AGG | + | chr1_2:71909993-71910012 | None:intergenic | 45.0% |
| ! | CTTCCAATGCTTGGTGATTG+TGG | - | chr1_2:71910302-71910321 | Msa0090080:intron | 45.0% |
| ! | TTGGTGATTGTGGCACCATT+CGG | - | chr1_2:71910312-71910331 | Msa0090080:intron | 45.0% |
| CAGGTGTCTCTTCATTTCTG+GGG | - | chr1_2:71910620-71910639 | Msa0090080:intron | 45.0% | |
| !! | TCTCTTCATTTCTGGGGTAC+TGG | - | chr1_2:71910626-71910645 | Msa0090080:intron | 45.0% |
| ! | AAGGCGTGTTGATATGCAGT+CGG | + | chr1_2:71910848-71910867 | None:intergenic | 45.0% |
| GAGGGATACAATCAATCACC+TGG | - | chr1_2:71911002-71911021 | Msa0090080:intron | 45.0% | |
| CGGATACATCTCAACCTAAG+GGG | + | chr1_2:71911414-71911433 | None:intergenic | 45.0% | |
| CCGGATACATCTCAACCTAA+GGG | + | chr1_2:71911415-71911434 | None:intergenic | 45.0% | |
| !! | CCCTTAGGTTGAGATGTATC+CGG | - | chr1_2:71911412-71911431 | Msa0090080:CDS | 45.0% |
| TCCGGATACATCTCAACCTA+AGG | + | chr1_2:71911416-71911435 | None:intergenic | 45.0% | |
| ! | CAGCAATCTGGTTCAACATC+CGG | + | chr1_2:71911434-71911453 | None:intergenic | 45.0% |
| AATGGGTAGAAGCAGCAATC+TGG | + | chr1_2:71911446-71911465 | None:intergenic | 45.0% | |
| GCAAGCCAACTCTTAAGACA+CGG | - | chr1_2:71911661-71911680 | Msa0090080:intron | 45.0% | |
| CAAGCCAACTCTTAAGACAC+GGG | - | chr1_2:71911662-71911681 | Msa0090080:intron | 45.0% | |
| AATGCCCGTGTCTTAAGAGT+TGG | + | chr1_2:71911669-71911688 | None:intergenic | 45.0% | |
| TAAGACACGGGCATTTCAAG+AGG | - | chr1_2:71911674-71911693 | Msa0090080:intron | 45.0% | |
| CACTGTGGAGTTACTCTGTT+GGG | - | chr1_2:71911739-71911758 | Msa0090080:intron | 45.0% | |
| GAGTTACTCTGTTGGGTTCA+TGG | - | chr1_2:71911746-71911765 | Msa0090080:intron | 45.0% | |
| AAGTTGCGCAACCTCACAAT+TGG | + | chr1_2:71911786-71911805 | None:intergenic | 45.0% | |
| ! | CATTAGCCTCAATCTGAGTG+TGG | + | chr1_2:71911961-71911980 | None:intergenic | 45.0% |
| CGCAGGATCATTAGGTAGAA+AGG | + | chr1_2:71912017-71912036 | None:intergenic | 45.0% | |
| TCAAGAAAAGATGATGCCGC+AGG | + | chr1_2:71912034-71912053 | None:intergenic | 45.0% | |
| ! | TGCGGCATCATCTTTTCTTG+AGG | - | chr1_2:71912033-71912052 | Msa0090080:intron | 45.0% |
| AGGTCAACCAACATCCAACA+AGG | + | chr1_2:71912113-71912132 | None:intergenic | 45.0% | |
| AGCATCGTCAGTCACTTCAT+TGG | + | chr1_2:71912268-71912287 | None:intergenic | 45.0% | |
| GGCTAAACACTATCGTATGG+TGG | - | chr1_2:71912319-71912338 | Msa0090080:intron | 45.0% | |
| AGAATCAGCAAGTGATGAGG+AGG | - | chr1_2:71912762-71912781 | Msa0090080:intron | 45.0% | |
| AGTTCCATCCACGTTCTCTT+TGG | + | chr1_2:71912809-71912828 | None:intergenic | 45.0% | |
| ! | TTTAGCTCATCCTGGTTACC+CGG | - | chr1_2:71912835-71912854 | Msa0090080:intron | 45.0% |
| GTGTGTTTGTGTATGCAGCT+GGG | + | chr1_2:71912908-71912927 | None:intergenic | 45.0% | |
| CTGAGGAATGCATTGCTTTC+AGG | - | chr1_2:71912986-71913005 | Msa0090080:intron | 45.0% | |
| CAACAGCCTACTGAACCAAA+AGG | - | chr1_2:71913015-71913034 | Msa0090080:intron | 45.0% | |
| ! | TGATGATGTTGTGGAGGACT+TGG | - | chr1_2:71913077-71913096 | Msa0090080:intron | 45.0% |
| AGCAGTAGATTAACGTGCGG+TGG | - | chr1_2:71907587-71907606 | Msa0090080:three_prime_UTR | 50.0% | |
| GCAGTAGATTAACGTGCGGT+GGG | - | chr1_2:71907588-71907607 | Msa0090080:three_prime_UTR | 50.0% | |
| GATGGTTGGAAGAAAAGCGG+CGG | - | chr1_2:71907714-71907733 | Msa0090080:three_prime_UTR | 50.0% | |
| AAAAGCGGCGGTGAAGGAAA+TGG | - | chr1_2:71907726-71907745 | Msa0090080:three_prime_UTR | 50.0% | |
| CTTCGTCTACGTCTACCCTA+TGG | + | chr1_2:71908381-71908400 | None:intergenic | 50.0% | |
| !! | GTGGCTAAATGATGGGTGAC+TGG | - | chr1_2:71908963-71908982 | Msa0090080:intron | 50.0% |
| !! | CTAAATGATGGGTGACTGGC+TGG | - | chr1_2:71908967-71908986 | Msa0090080:intron | 50.0% |
| GACTGTGCTTGTGTGTTTGC+TGG | - | chr1_2:71909392-71909411 | Msa0090080:CDS | 50.0% | |
| CATGGAAGATGGAGAACCAC+AGG | - | chr1_2:71909677-71909696 | Msa0090080:CDS | 50.0% | |
| ! | GTTCCCTGATGAGGGCTTTT+AGG | - | chr1_2:71909829-71909848 | Msa0090080:CDS | 50.0% |
| CTGTCCTAAAAGCCCTCATC+AGG | + | chr1_2:71909836-71909855 | None:intergenic | 50.0% | |
| TTGAAGCTTCCTGCTTCTGG+TGG | - | chr1_2:71909981-71910000 | Msa0090080:intron | 50.0% | |
| !! | GTGGAGAGCATTTCCAAGGT+AGG | + | chr1_2:71910075-71910094 | None:intergenic | 50.0% |
| !! | CTGCTTTTCCTTCGCTCCTA+AGG | - | chr1_2:71910171-71910190 | Msa0090080:intron | 50.0% |
| GTGCCACAATCACCAAGCAT+TGG | + | chr1_2:71910308-71910327 | None:intergenic | 50.0% | |
| !! | CTTCATTTCTGGGGTACTGG+TGG | - | chr1_2:71910629-71910648 | Msa0090080:intron | 50.0% |
| CGTCATTGAACTTCTCGGAG+TGG | - | chr1_2:71910817-71910836 | Msa0090080:intron | 50.0% | |
| ACCTAGCTGTGGGAACTAGA+CGG | + | chr1_2:71911386-71911405 | None:intergenic | 50.0% | |
| !! | AGGGGAAAGTACCTAGCTGT+GGG | + | chr1_2:71911396-71911415 | None:intergenic | 50.0% |
| !! | AAGGGGAAAGTACCTAGCTG+TGG | + | chr1_2:71911397-71911416 | None:intergenic | 50.0% |
| CAGCTAGGTACTTTCCCCTT+AGG | - | chr1_2:71911397-71911416 | Msa0090080:CDS | 50.0% | |
| GAGTTGAATAGACCCCCTAC+AGG | - | chr1_2:71911513-71911532 | Msa0090080:CDS | 50.0% | |
| TTGAATAGACCCCCTACAGG+AGG | - | chr1_2:71911516-71911535 | Msa0090080:CDS | 50.0% | |
| CAGAGTAACTCCACAGTGCT+AGG | + | chr1_2:71911737-71911756 | None:intergenic | 50.0% | |
| GCACTGTGGAGTTACTCTGT+TGG | - | chr1_2:71911738-71911757 | Msa0090080:intron | 50.0% | |
| AATGAGGCAGCTTATTCGCG+AGG | - | chr1_2:71911842-71911861 | Msa0090080:intron | 50.0% | |
| GATGATGCCGCAGGATCATT+AGG | + | chr1_2:71912025-71912044 | None:intergenic | 50.0% | |
| TATGCAGGTAGCTGAGAGCT+TGG | + | chr1_2:71912188-71912207 | None:intergenic | 50.0% | |
| TGAGGATGCCAAAGAGAACG+TGG | - | chr1_2:71912798-71912817 | Msa0090080:intron | 50.0% | |
| GATGCCAAAGAGAACGTGGA+TGG | - | chr1_2:71912802-71912821 | Msa0090080:intron | 50.0% | |
| ! | CTGCTGCATTTAGCTCATCC+TGG | - | chr1_2:71912827-71912846 | Msa0090080:intron | 50.0% |
| ! | CTTGTCATTTCCGGGTAACC+AGG | + | chr1_2:71912848-71912867 | None:intergenic | 50.0% |
| CGTGTGTTTGTGTATGCAGC+TGG | + | chr1_2:71912909-71912928 | None:intergenic | 50.0% | |
| GATCTCTTCAGCGTGTAAGC+TGG | - | chr1_2:71913524-71913543 | Msa0090080:exon | 50.0% | |
| TCTTCAGCGTGTAAGCTGGT+AGG | - | chr1_2:71913528-71913547 | Msa0090080:exon | 50.0% | |
| ATATCAGGGGCAACTTGGTC+TGG | + | chr1_2:71913617-71913636 | None:intergenic | 50.0% | |
| TGGAAGAAAAGCGGCGGTGA+AGG | - | chr1_2:71907720-71907739 | Msa0090080:three_prime_UTR | 55.0% | |
| ATGCGGTTCGTTCCCTGATG+AGG | - | chr1_2:71909820-71909839 | Msa0090080:CDS | 55.0% | |
| TGCGGTTCGTTCCCTGATGA+GGG | - | chr1_2:71909821-71909840 | Msa0090080:CDS | 55.0% | |
| !! | CATTTCTGGGGTACTGGTGG+AGG | - | chr1_2:71910632-71910651 | Msa0090080:intron | 55.0% |
| CCTAGCTGTGGGAACTAGAC+GGG | + | chr1_2:71911385-71911404 | None:intergenic | 55.0% | |
| TTTGCCAACGCCTCCTGTAG+GGG | + | chr1_2:71911529-71911548 | None:intergenic | 55.0% | |
| CTTTGCCAACGCCTCCTGTA+GGG | + | chr1_2:71911530-71911549 | None:intergenic | 55.0% | |
| TTGCGGAACACCTAGCACTG+TGG | - | chr1_2:71911724-71911743 | Msa0090080:intron | 55.0% | |
| ! | CGGCATTTTTCCCGGCAGAA+GGG | + | chr1_2:71913146-71913165 | None:intergenic | 55.0% |
| ! | TCGGCATTTTTCCCGGCAGA+AGG | + | chr1_2:71913147-71913166 | None:intergenic | 55.0% |
| ! | CCCGTCTAGTTCCCACAGCT+AGG | - | chr1_2:71911382-71911401 | Msa0090080:CDS | 60.0% |
| TTGCCAACGCCTCCTGTAGG+GGG | + | chr1_2:71911528-71911547 | None:intergenic | 60.0% | |
| GCTTTGCCAACGCCTCCTGT+AGG | + | chr1_2:71911531-71911550 | None:intergenic | 60.0% | |
| ! | GCAGAAGGGCTGTCGCTTGA+AGG | + | chr1_2:71913132-71913151 | None:intergenic | 60.0% |
| TCAAGCGACAGCCCTTCTGC+CGG | - | chr1_2:71913132-71913151 | Msa0090080:intron | 60.0% | |
| TCAGGGGCAACTTGGTCTGG+AGG | + | chr1_2:71913614-71913633 | None:intergenic | 60.0% | |
| ! | AGACCCCCTACAGGAGGCGT+TGG | - | chr1_2:71911522-71911541 | Msa0090080:CDS | 65.0% |
| CAAGCGACAGCCCTTCTGCC+GGG | - | chr1_2:71913133-71913152 | Msa0090080:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 71907554 | 71913689 | 71907554 | ID=Msa0090080;Name=Msa0090080 |
| chr1_2 | mRNA | 71907554 | 71913689 | 71907554 | ID=Msa0090080-mRNA-1;Parent=Msa0090080;Name=Msa0090080-mRNA-1;_AED=0.06;_eAED=0.06;_QI=161|1|1|1|1|1|11|438|730 |
| chr1_2 | exon | 71907554 | 71908235 | 71907554 | ID=Msa0090080-mRNA-1:exon:24923;Parent=Msa0090080-mRNA-1 |
| chr1_2 | exon | 71908377 | 71908520 | 71908377 | ID=Msa0090080-mRNA-1:exon:24922;Parent=Msa0090080-mRNA-1 |
| chr1_2 | exon | 71908621 | 71908715 | 71908621 | ID=Msa0090080-mRNA-1:exon:24921;Parent=Msa0090080-mRNA-1 |
| chr1_2 | exon | 71909189 | 71909275 | 71909189 | ID=Msa0090080-mRNA-1:exon:24920;Parent=Msa0090080-mRNA-1 |
| chr1_2 | exon | 71909380 | 71909586 | 71909380 | ID=Msa0090080-mRNA-1:exon:24919;Parent=Msa0090080-mRNA-1 |
| chr1_2 | exon | 71909668 | 71909997 | 71909668 | ID=Msa0090080-mRNA-1:exon:24918;Parent=Msa0090080-mRNA-1 |
| chr1_2 | exon | 71910318 | 71910620 | 71910318 | ID=Msa0090080-mRNA-1:exon:24917;Parent=Msa0090080-mRNA-1 |
| chr1_2 | exon | 71911038 | 71911583 | 71911038 | ID=Msa0090080-mRNA-1:exon:24916;Parent=Msa0090080-mRNA-1 |
| chr1_2 | exon | 71912608 | 71912679 | 71912608 | ID=Msa0090080-mRNA-1:exon:24915;Parent=Msa0090080-mRNA-1 |
| chr1_2 | exon | 71913277 | 71913386 | 71913277 | ID=Msa0090080-mRNA-1:exon:24914;Parent=Msa0090080-mRNA-1 |
| chr1_2 | exon | 71913474 | 71913689 | 71913474 | ID=Msa0090080-mRNA-1:exon:24913;Parent=Msa0090080-mRNA-1 |
| chr1_2 | five_prime_UTR | 71913529 | 71913689 | 71913529 | ID=Msa0090080-mRNA-1:five_prime_utr;Parent=Msa0090080-mRNA-1 |
| chr1_2 | CDS | 71913474 | 71913528 | 71913474 | ID=Msa0090080-mRNA-1:cds;Parent=Msa0090080-mRNA-1 |
| chr1_2 | CDS | 71913277 | 71913386 | 71913277 | ID=Msa0090080-mRNA-1:cds;Parent=Msa0090080-mRNA-1 |
| chr1_2 | CDS | 71912608 | 71912679 | 71912608 | ID=Msa0090080-mRNA-1:cds;Parent=Msa0090080-mRNA-1 |
| chr1_2 | CDS | 71911038 | 71911583 | 71911038 | ID=Msa0090080-mRNA-1:cds;Parent=Msa0090080-mRNA-1 |
| chr1_2 | CDS | 71910318 | 71910620 | 71910318 | ID=Msa0090080-mRNA-1:cds;Parent=Msa0090080-mRNA-1 |
| chr1_2 | CDS | 71909668 | 71909997 | 71909668 | ID=Msa0090080-mRNA-1:cds;Parent=Msa0090080-mRNA-1 |
| chr1_2 | CDS | 71909380 | 71909586 | 71909380 | ID=Msa0090080-mRNA-1:cds;Parent=Msa0090080-mRNA-1 |
| chr1_2 | CDS | 71909189 | 71909275 | 71909189 | ID=Msa0090080-mRNA-1:cds;Parent=Msa0090080-mRNA-1 |
| chr1_2 | CDS | 71908621 | 71908715 | 71908621 | ID=Msa0090080-mRNA-1:cds;Parent=Msa0090080-mRNA-1 |
| chr1_2 | CDS | 71908377 | 71908520 | 71908377 | ID=Msa0090080-mRNA-1:cds;Parent=Msa0090080-mRNA-1 |
| chr1_2 | CDS | 71907992 | 71908235 | 71907992 | ID=Msa0090080-mRNA-1:cds;Parent=Msa0090080-mRNA-1 |
| chr1_2 | three_prime_UTR | 71907554 | 71907991 | 71907554 | ID=Msa0090080-mRNA-1:three_prime_utr;Parent=Msa0090080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
