AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0090720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090720 MtrunA17_Chr1g0210911 91.379 348 9 7 1 341 1 334 0.0 609
Msa0090720 MtrunA17_Chr1g0162931 47.493 339 117 15 3 338 2 282 1.61e-77 239
Msa0090720 MtrunA17_Chr2g0320231 60.870 92 33 2 8 99 81 169 1.39e-31 122
Msa0090720 MtrunA17_Chr2g0288601 69.118 68 21 0 8 75 55 122 7.00e-29 108
Msa0090720 MtrunA17_Chr7g0243081 64.557 79 28 0 2 80 49 127 2.15e-28 112
Msa0090720 MtrunA17_Chr8g0379121 69.697 66 20 0 15 80 102 167 4.06e-28 113
Msa0090720 MtrunA17_Chr2g0283951 60.227 88 29 3 4 85 68 155 1.16e-25 105
Msa0090720 MtrunA17_Chr3g0095611 57.971 69 29 0 14 82 9 77 6.17e-24 97.8
Msa0090720 MtrunA17_Chr5g0410741 47.170 106 49 3 23 127 218 317 1.02e-21 95.1
Msa0090720 MtrunA17_Chr6g0479431 63.793 58 21 0 23 80 201 258 2.80e-21 93.6
Msa0090720 MtrunA17_Chr8g0366281 65.517 58 20 0 23 80 172 229 3.47e-21 93.2
Msa0090720 MtrunA17_Chr1g0154261 59.091 66 25 1 15 80 119 182 9.79e-21 90.9
Msa0090720 MtrunA17_Chr3g0109981 63.793 58 21 0 23 80 273 330 3.63e-20 91.3
Msa0090720 MtrunA17_Chr1g0190301 67.857 56 18 0 25 80 176 231 7.58e-20 89.7
Msa0090720 MtrunA17_Chr7g0261911 66.071 56 19 0 25 80 263 318 1.97e-19 89.0
Msa0090720 MtrunA17_Chr7g0274471 66.071 56 19 0 25 80 219 274 4.49e-19 87.8
Msa0090720 MtrunA17_Chr5g0409731 47.059 102 44 3 1 97 1 97 3.26e-18 83.6
Msa0090720 MtrunA17_Chr5g0417521 47.778 90 37 3 25 109 16 100 4.14e-17 81.3
Msa0090720 MtrunA17_Chr6g0461641 55.882 68 30 0 25 92 43 110 4.22e-17 81.6
Msa0090720 MtrunA17_Chr1g0197171 36.170 141 72 3 25 162 45 170 1.15e-16 79.3
Msa0090720 MtrunA17_Chr2g0321461 62.264 53 20 0 25 77 46 98 6.48e-16 78.2
Msa0090720 MtrunA17_Chr8g0356501 56.452 62 22 1 25 86 38 94 2.29e-15 76.3
Msa0090720 MtrunA17_Chr7g0258551 54.098 61 28 0 20 80 208 268 2.50e-15 76.3
Msa0090720 MtrunA17_Chr2g0290991 56.452 62 22 1 25 86 40 96 4.82e-15 74.7
Msa0090720 MtrunA17_Chr2g0310011 56.452 62 22 1 25 86 36 92 5.05e-15 75.1
Msa0090720 MtrunA17_Chr4g0042451 55.932 59 26 0 25 83 18 76 7.65e-15 74.3
Msa0090720 MtrunA17_Chr7g0254981 65.385 52 18 0 26 77 52 103 8.22e-15 73.6
Msa0090720 MtrunA17_Chr2g0291021 65.385 52 18 0 26 77 51 102 8.46e-15 74.3
Msa0090720 MtrunA17_Chr1g0175091 63.462 52 19 0 26 77 260 311 9.14e-15 74.7
Msa0090720 MtrunA17_Chr1g0175071 35.484 124 66 2 2 123 155 266 2.66e-14 72.8
Msa0090720 MtrunA17_Chr1g0175081 55.769 52 23 0 26 77 24 75 1.00e-12 63.9
Msa0090720 MtrunA17_Chr4g0045361 61.224 49 19 0 29 77 279 327 1.49e-12 68.2
Msa0090720 MtrunA17_Chr4g0009901 43.662 71 39 1 7 77 151 220 4.39e-12 65.9
Msa0090720 MtrunA17_Chr4g0062921 59.184 49 20 0 29 77 240 288 5.61e-12 66.6
Msa0090720 MtrunA17_Chr5g0402631 59.184 49 20 0 29 77 219 267 2.88e-11 63.9
Msa0090720 MtrunA17_Chr4g0031961 50.794 63 30 1 15 77 122 183 3.87e-11 63.2
Msa0090720 MtrunA17_Chr5g0422621 55.102 49 22 0 29 77 203 251 9.22e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090720 AT1G14600.1 72.152 79 22 0 5 83 4 82 4.61e-34 126
Msa0090720 AT2G02060.2 69.512 82 20 1 1 77 1 82 1.98e-33 124
Msa0090720 AT2G02060.1 69.512 82 20 1 1 77 1 82 1.98e-33 124
Msa0090720 AT4G04605.1 70.149 67 20 0 16 82 6 72 8.52e-29 111
Msa0090720 AT2G40260.1 66.667 75 25 0 13 87 71 145 4.11e-28 113
Msa0090720 AT2G42660.1 55.319 94 39 1 16 106 42 135 3.48e-27 107
Msa0090720 AT2G38300.1 54.737 95 41 1 1 95 31 123 3.53e-26 107
Msa0090720 AT4G04555.1 54.054 74 34 0 13 86 3 76 3.88e-22 90.1
Msa0090720 AT5G42630.2 43.363 113 58 3 6 113 86 197 2.44e-21 91.3
Msa0090720 AT5G42630.1 43.363 113 58 3 6 113 86 197 3.04e-21 92.4
Msa0090720 AT4G17695.1 62.712 59 22 0 23 81 163 221 4.25e-21 92.8
Msa0090720 AT1G32240.2 63.793 58 21 0 23 80 212 269 1.73e-20 91.7
Msa0090720 AT1G32240.1 63.793 58 21 0 23 80 212 269 2.10e-20 91.7
Msa0090720 AT5G16560.1 63.793 58 21 0 23 80 218 275 4.67e-20 90.9
Msa0090720 AT4G04580.1 56.716 67 29 0 16 82 6 72 3.20e-19 84.0
Msa0090720 AT4G28610.1 63.636 55 20 0 26 80 227 281 4.76e-18 85.1
Msa0090720 AT5G45580.1 53.333 75 35 0 21 95 4 78 1.25e-17 82.0
Msa0090720 AT5G45580.2 53.333 75 35 0 21 95 20 94 1.49e-17 82.0
Msa0090720 AT3G24120.1 42.017 119 56 4 25 141 42 149 1.81e-17 82.0
Msa0090720 AT3G24120.2 42.017 119 56 4 25 141 42 149 1.83e-17 82.0
Msa0090720 AT3G04450.3 63.636 55 20 0 26 80 240 294 2.43e-17 82.0
Msa0090720 AT3G04450.4 63.636 55 20 0 26 80 200 254 2.69e-17 82.8
Msa0090720 AT3G04450.2 63.636 55 20 0 26 80 200 254 2.69e-17 82.8
Msa0090720 AT3G04450.1 63.636 55 20 0 26 80 240 294 3.19e-17 82.8
Msa0090720 AT5G29000.1 63.636 55 20 0 26 80 190 244 3.62e-17 82.0
Msa0090720 AT5G29000.3 63.636 55 20 0 26 80 190 244 3.62e-17 82.0
Msa0090720 AT5G29000.2 63.636 55 20 0 26 80 233 287 5.35e-17 82.0
Msa0090720 AT5G29000.4 63.636 55 20 0 26 80 233 287 5.50e-17 80.9
Msa0090720 AT4G13640.1 48.276 87 35 2 25 111 38 114 3.20e-16 78.2
Msa0090720 AT4G13640.2 48.276 87 35 2 25 111 38 114 3.31e-16 78.2
Msa0090720 AT2G06020.1 38.182 110 59 3 7 107 66 175 3.41e-16 78.6
Msa0090720 AT2G20400.2 61.818 55 21 0 26 80 233 287 3.45e-16 79.3
Msa0090720 AT2G20400.1 61.818 55 21 0 26 80 233 287 3.63e-16 79.3
Msa0090720 AT3G12730.1 49.351 77 33 2 25 100 24 95 3.94e-16 77.0
Msa0090720 AT5G18240.2 50.725 69 34 0 9 77 30 98 5.92e-16 78.6
Msa0090720 AT5G18240.3 50.725 69 34 0 9 77 30 98 5.92e-16 78.6
Msa0090720 AT5G18240.5 50.725 69 34 0 9 77 30 98 6.82e-16 78.6
Msa0090720 AT5G18240.1 50.725 69 34 0 9 77 30 98 7.63e-16 78.6
Msa0090720 AT5G18240.4 50.725 69 34 0 9 77 30 98 7.63e-16 78.6
Msa0090720 AT3G13040.3 65.385 52 18 0 26 77 243 294 8.03e-16 78.6
Msa0090720 AT3G13040.1 65.385 52 18 0 26 77 243 294 8.03e-16 78.6
Msa0090720 AT3G13040.2 65.385 52 18 0 26 77 243 294 8.03e-16 78.6
Msa0090720 AT3G04030.1 58.491 53 22 0 25 77 46 98 1.25e-15 77.8
Msa0090720 AT3G04030.3 58.491 53 22 0 25 77 46 98 1.61e-15 77.4
Msa0090720 AT1G79430.2 56.452 62 22 1 25 86 35 91 3.76e-15 75.9
Msa0090720 AT2G01060.1 65.385 52 18 0 26 77 17 68 4.62e-15 75.1
Msa0090720 AT1G69580.1 46.341 82 40 2 25 103 35 115 2.23e-14 73.6
Msa0090720 AT1G69580.2 46.341 82 40 2 25 103 35 115 2.52e-14 73.6
Msa0090720 AT1G25550.1 63.265 49 18 0 29 77 214 262 1.12e-13 71.6
Msa0090720 AT5G06800.3 61.538 52 20 0 26 77 194 245 1.58e-13 70.5
Msa0090720 AT5G06800.1 61.538 52 20 0 26 77 194 245 3.65e-13 70.1
Msa0090720 AT5G06800.2 61.538 52 20 0 26 77 194 245 3.77e-13 70.1
Msa0090720 AT3G04030.2 54.717 53 23 1 25 77 46 97 7.35e-13 69.3
Msa0090720 AT1G25550.2 47.826 69 36 0 9 77 194 262 1.37e-12 67.8
Msa0090720 AT2G03500.1 59.184 49 20 0 29 77 238 286 5.97e-12 66.6
Msa0090720 AT5G44190.1 48.571 70 34 2 23 91 146 214 7.46e-12 66.2
Msa0090720 AT5G44190.2 48.571 70 34 2 23 91 146 214 9.28e-12 65.9
Msa0090720 AT4G37180.1 54.237 59 27 0 19 77 205 263 9.45e-12 65.9
Msa0090720 AT5G59570.2 53.571 56 25 1 22 77 139 193 1.09e-11 65.1
Msa0090720 AT5G59570.1 53.571 56 25 1 22 77 139 193 1.09e-11 65.1
Msa0090720 AT4G37180.2 54.237 59 27 0 19 77 212 270 1.20e-11 65.5
Msa0090720 AT1G68670.1 59.184 49 20 0 29 77 220 268 2.06e-11 64.7
Msa0090720 AT1G13300.1 46.479 71 32 1 7 77 170 234 4.70e-11 63.5
Msa0090720 AT5G58080.1 50.000 72 30 2 6 77 181 246 4.89e-11 64.3
Msa0090720 AT3G46640.2 52.727 55 25 1 23 77 143 196 6.31e-11 63.2
Msa0090720 AT3G46640.1 52.727 55 25 1 23 77 143 196 6.31e-11 63.2
Msa0090720 AT3G46640.3 45.333 75 40 1 3 77 123 196 8.22e-11 62.8

Find 92 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACTTTGCTACCAGATTT+TGG 0.184199 1_2:+72833824 Msa0090720:CDS
CCTGAGAGAAATCAGATTCT+TGG 0.196675 1_2:-72833877 None:intergenic
TAAACTTGTTCTTCAGTTGA+TGG 0.274648 1_2:+72832655 Msa0090720:CDS
AGAAGCATGAGAGGTGAATT+AGG 0.294301 1_2:+72832812 Msa0090720:CDS
ATCTGGTAGCAAAGTTGAAT+TGG 0.294548 1_2:-72833819 None:intergenic
AGCCCTTCATGGTCAATTAA+TGG 0.311061 1_2:+72835497 Msa0090720:CDS
GACAAGTAATGCTTCTTATT+CGG 0.316581 1_2:+72835613 Msa0090720:CDS
GAGAGAGGGGAATAAGTATA+AGG 0.332664 1_2:-72832181 None:intergenic
GGAAGAGAAGGAGGAGGATC+AGG 0.336536 1_2:+72832423 Msa0090720:CDS
TCCCCTCTCTCTCTTCCAGC+TGG 0.347792 1_2:+72832193 Msa0090720:five_prime_UTR
GAATCTGATTCTTCTTTCAT+TGG 0.354755 1_2:+72833376 Msa0090720:CDS
CAAGACATTGGTTTCTATGT+TGG 0.368948 1_2:-72833285 None:intergenic
AGAGCTCTGAAAATTCCTTT+AGG 0.369266 1_2:-72832126 None:intergenic
ACAGTAACAACTTCTCAAAA+AGG 0.375282 1_2:+72833401 Msa0090720:CDS
AACAAATATTCCAACCCTCT+TGG 0.376468 1_2:-72832367 None:intergenic
AAGACATTGGTTTCTATGTT+GGG 0.380947 1_2:-72833284 None:intergenic
GCAGAACAAGAAAGGAATAA+AGG 0.382336 1_2:+72833754 Msa0090720:CDS
ACCCATCAGGACCAGGGTTA+GGG 0.390120 1_2:-72835673 None:intergenic
GACCTATCTTTAGCCATTTG+TGG 0.393044 1_2:+72835755 Msa0090720:CDS
AACCCATCAGGACCAGGGTT+AGG 0.394026 1_2:-72835674 None:intergenic
ATCAACTGAAGAACAAGTTT+AGG 0.398456 1_2:-72832653 None:intergenic
ATCAAATCAATTGCCACAAA+TGG 0.410193 1_2:-72835768 None:intergenic
CTTTAGGACATTGGTGTCAC+TGG 0.428624 1_2:-72832110 None:intergenic
ACAAAGCAACGATGAAGTTC+AGG 0.428827 1_2:-72832498 None:intergenic
CTGCAGATCACCCATGGTAT+TGG 0.429020 1_2:-72833726 None:intergenic
ACACGTCAAGAGCCATCTTC+AGG 0.432180 1_2:+72832700 Msa0090720:CDS
GTGAGGTTTATGCCAAAATC+TGG 0.438737 1_2:-72833836 None:intergenic
ATGACAGAAAGAGCCCTTCA+TGG 0.449662 1_2:+72835486 Msa0090720:CDS
TGAAAATTCCTTTAGGACAT+TGG 0.453439 1_2:-72832119 None:intergenic
CCCCTAACCCTGGTCCTGAT+GGG 0.456881 1_2:+72835672 Msa0090720:CDS
AGTAGTAGTTGTGGAAGAGA+AGG 0.462888 1_2:+72832411 Msa0090720:CDS
GTTCATGCTATTCAAACCCT+TGG 0.466593 1_2:+72832519 Msa0090720:CDS
TAGAAAATGAGTAGTAGTTG+TGG 0.467194 1_2:+72832402 Msa0090720:exon
CATGGTATTGGCATTGGCAT+TGG 0.470956 1_2:-72833714 None:intergenic
TCTGGTAGCAAAGTTGAATT+GGG 0.475643 1_2:-72833818 None:intergenic
CTGCTAAACCCATCAGGACC+AGG 0.477057 1_2:-72835680 None:intergenic
CATCATGCTCTTCAAGACAT+TGG 0.479410 1_2:-72833297 None:intergenic
TGCCACAAATGGCTAAAGAT+AGG 0.479487 1_2:-72835757 None:intergenic
AGTTGTGGAAGAGAAGGAGG+AGG 0.483366 1_2:+72832417 Msa0090720:CDS
AGTAGTTGTGGAAGAGAAGG+AGG 0.488905 1_2:+72832414 Msa0090720:CDS
CCAAGAATCTGATTTCTCTC+AGG 0.491648 1_2:+72833877 Msa0090720:CDS
GCATTACTTGTCTGAGGTGA+AGG 0.495350 1_2:-72835602 None:intergenic
TTCAGTTGATGGATATCAAA+GGG 0.496688 1_2:+72832666 Msa0090720:CDS
CATGCTATTCAAACCCTTGG+AGG 0.504028 1_2:+72832522 Msa0090720:CDS
TTGTAGCTGCTAAACCCATC+AGG 0.505555 1_2:-72835686 None:intergenic
AGAGCACATGTAGAAGTTGA+AGG 0.510912 1_2:+72835536 Msa0090720:CDS
CAGCAGCTGCAGAACAAGAA+AGG 0.510940 1_2:+72833746 Msa0090720:CDS
CAGTGACACCAATGTCCTAA+AGG 0.511162 1_2:+72832111 Msa0090720:five_prime_UTR
AATTGCCTCACTGATTTCAC+TGG 0.511384 1_2:-72835636 None:intergenic
CATGTAGAAGTTGAAGGAGT+AGG 0.522933 1_2:+72835542 Msa0090720:CDS
AATGAAAATGAACCTGAAGA+TGG 0.525028 1_2:-72832712 None:intergenic
AACAAAGAGAATAAAGAAAG+AGG 0.533584 1_2:-72835840 None:intergenic
CAAAAGTCCCTCGTTTGAGA+TGG 0.534114 1_2:+72832472 Msa0090720:CDS
ATCACCCATGGTATTGGCAT+TGG 0.534408 1_2:-72833720 None:intergenic
TTAGAGATTTGAAAGAAGTG+AGG 0.544979 1_2:-72833853 None:intergenic
TTATATTTATACAAAGAAGA+GGG 0.546172 1_2:-72832261 None:intergenic
CTCCATTAATTGACCATGAA+GGG 0.546656 1_2:-72835499 None:intergenic
TATGGAAAACAGAATCCAGC+TGG 0.547701 1_2:-72832208 None:intergenic
TATCATCTACTGTGAATGAA+AGG 0.549767 1_2:+72835723 Msa0090720:CDS
CTTCAGTTGATGGATATCAA+AGG 0.552892 1_2:+72832665 Msa0090720:CDS
TGTCTTGAAGAGCATGATGA+TGG 0.559094 1_2:+72833301 Msa0090720:CDS
AATCCAGCTGGAAGAGAGAG+AGG 0.561102 1_2:-72832196 None:intergenic
GTAATATCTGATCCTTCTGA+TGG 0.563151 1_2:-72832088 None:intergenic
TTTATATTTATACAAAGAAG+AGG 0.563610 1_2:-72832262 None:intergenic
TGATGGGTTTAGCAGCTACA+AGG 0.568771 1_2:+72835688 Msa0090720:CDS
TTCTTGTTCCTACTCACTGG+GGG 0.569559 1_2:+72835880 Msa0090720:three_prime_UTR
CCCATCAGGACCAGGGTTAG+GGG 0.569771 1_2:-72835672 None:intergenic
ACTCCATTAATTGACCATGA+AGG 0.571573 1_2:-72835500 None:intergenic
GAGAGAAAATGAAAAGACGA+AGG 0.571611 1_2:-72832159 None:intergenic
CAGCTGCTGCAGATCACCCA+TGG 0.582133 1_2:-72833732 None:intergenic
GTAGAAGTTGAAGGAGTAGG+AGG 0.587674 1_2:+72835545 Msa0090720:CDS
ATGTTGAGCATTCTTTGATG+AGG 0.590128 1_2:+72833350 Msa0090720:CDS
TCCAGCTGGAAGAGAGAGAG+GGG 0.595971 1_2:-72832194 None:intergenic
ATCCAGCTGGAAGAGAGAGA+GGG 0.606721 1_2:-72832195 None:intergenic
CAGATGTATAGAAGCATGAG+AGG 0.614112 1_2:+72832803 Msa0090720:intron
CTTACTATGATGACCTCCAA+GGG 0.614845 1_2:-72832535 None:intergenic
AGAGAAGGAGGAGGATCAGG+AGG 0.615008 1_2:+72832426 Msa0090720:CDS
CAGGAGTCCATCTCAAACGA+GGG 0.615814 1_2:-72832479 None:intergenic
TGCTAAACCCATCAGGACCA+GGG 0.616115 1_2:-72835679 None:intergenic
ACTTACTATGATGACCTCCA+AGG 0.620124 1_2:-72832536 None:intergenic
TAAGAAGCATTACTTGTCTG+AGG 0.629009 1_2:-72835608 None:intergenic
CCATCAGGACCAGGGTTAGG+GGG 0.646226 1_2:-72835671 None:intergenic
CAATGCCAATGCCAATACCA+TGG 0.649873 1_2:+72833715 Msa0090720:CDS
ACATAGTCATAAAAGCAGTA+CGG 0.651015 1_2:-72833680 None:intergenic
TTTCTTGTTCCTACTCACTG+GGG 0.651664 1_2:+72835879 Msa0090720:three_prime_UTR
GTACAGCAACTACCATCAGA+AGG 0.658105 1_2:+72832076 None:intergenic
AGAGGTGAATTAGGAAGACA+AGG 0.660553 1_2:+72832821 Msa0090720:CDS
TCAGGAGTCCATCTCAAACG+AGG 0.669853 1_2:-72832480 None:intergenic
AATGCCAATGCCAATACCAT+GGG 0.680737 1_2:+72833716 Msa0090720:CDS
GGTAGCAAAGTTGAATTGGG+TGG 0.692739 1_2:-72833815 None:intergenic
GAGGATCAGGAGGAGCAGTG+AGG 0.714959 1_2:+72832436 Msa0090720:CDS
TTCGGCCAGTGAAATCAGTG+AGG 0.751752 1_2:+72835631 Msa0090720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAGAAAATATTGTATAAA+AGG - chr1_2:72833236-72833255 None:intergenic 10.0%
!! ACATTAAAAAAAAAAGTTAT+TGG + chr1_2:72833478-72833497 Msa0090720:intron 10.0%
!! TTATATTTATACAAAGAAGA+GGG - chr1_2:72832264-72832283 None:intergenic 15.0%
!! TTTATATTTATACAAAGAAG+AGG - chr1_2:72832265-72832284 None:intergenic 15.0%
!!! ATATTGTATAAAAGGTATAA+TGG - chr1_2:72833228-72833247 None:intergenic 15.0%
!! AAAAAAAAGTTATTGGTATT+TGG + chr1_2:72833485-72833504 Msa0090720:intron 15.0%
!! CAAAAAATAAGTTAAAGTAA+TGG - chr1_2:72833535-72833554 None:intergenic 15.0%
!!! AATATTTAAACCTTTCATTT+TGG + chr1_2:72834270-72834289 Msa0090720:intron 15.0%
!!! ATATTTAAACCTTTCATTTT+GGG + chr1_2:72834271-72834290 Msa0090720:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG - chr1_2:72834476-72834495 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr1_2:72834477-72834496 None:intergenic 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG - chr1_2:72834542-72834561 None:intergenic 15.0%
!! ATTCTATACAAACATTTAAT+CGG + chr1_2:72834876-72834895 Msa0090720:intron 15.0%
!!! AAACAAAACATGATAAATTT+TGG - chr1_2:72834996-72835015 None:intergenic 15.0%
!!! CTCATTTTAAATATTTTTAC+TGG + chr1_2:72835349-72835368 Msa0090720:intron 15.0%
!!! TCTATTATTTTTTCTTCTCT+TGG + chr1_2:72832954-72832973 Msa0090720:intron 20.0%
!!! TTTTTTGAAATAAGTCCTTA+TGG + chr1_2:72833548-72833567 Msa0090720:intron 20.0%
!!! TCTTTATCTCTTACTTTTAT+TGG + chr1_2:72833951-72833970 Msa0090720:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr1_2:72834407-72834426 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG - chr1_2:72834517-72834536 None:intergenic 20.0%
!! TTCTATACAAACATTTAATC+GGG + chr1_2:72834877-72834896 Msa0090720:intron 20.0%
!! AAAGTCATATTCCAATAATT+AGG - chr1_2:72835111-72835130 None:intergenic 20.0%
!! TACAAAAAAAGTTGTTTACT+TGG - chr1_2:72835316-72835335 None:intergenic 20.0%
!!! TCTTAATTTGTTTTTCCAAG+AGG + chr1_2:72832352-72832371 Msa0090720:five_prime_UTR 25.0%
!!! CTTAATTTGTTTTTCCAAGA+GGG + chr1_2:72832353-72832372 Msa0090720:five_prime_UTR 25.0%
!!! TTACTTTGTATTTTTGACAG+AGG + chr1_2:72832625-72832644 Msa0090720:intron 25.0%
!! GATTTTCTTTATGCATAACA+AGG + chr1_2:72833011-72833030 Msa0090720:intron 25.0%
! ATAATCCAAATCAAACCATA+AGG - chr1_2:72833566-72833585 None:intergenic 25.0%
! AAGTAAGAGATAAAGAAAGT+TGG - chr1_2:72833947-72833966 None:intergenic 25.0%
!!! TTATCTCTTACTTTTATTGG+AGG + chr1_2:72833954-72833973 Msa0090720:intron 25.0%
!! TTTTATTGGAGGAATCTATT+TGG + chr1_2:72833965-72833984 Msa0090720:intron 25.0%
! AAGTTAGCAGTATTAGTAAA+AGG + chr1_2:72834027-72834046 Msa0090720:intron 25.0%
!!! TGGTAGCTGTTTTAATTTTT+AGG + chr1_2:72834087-72834106 Msa0090720:intron 25.0%
!!! TAGCTGTTTTAATTTTTAGG+TGG + chr1_2:72834090-72834109 Msa0090720:intron 25.0%
! GAAAGGTTTAAATATTGAAC+AGG - chr1_2:72834266-72834285 None:intergenic 25.0%
!! AGTATAGTCTTGAAATGAAA+AGG - chr1_2:72834355-72834374 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr1_2:72834408-72834427 None:intergenic 25.0%
!!! TGAAATGAGTCAGTTATTTT+GGG - chr1_2:72834429-72834448 None:intergenic 25.0%
!! TTGAAATGAGTCAGTTATTT+TGG - chr1_2:72834430-72834449 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG - chr1_2:72834518-72834537 None:intergenic 25.0%
! TGTATAAATAAAGGAGAAAG+TGG - chr1_2:72834533-72834552 None:intergenic 25.0%
!!! TTTTTTAGTTAACCATCTTC+TGG + chr1_2:72834634-72834653 Msa0090720:intron 25.0%
! TCTATACAAACATTTAATCG+GGG + chr1_2:72834878-72834897 Msa0090720:intron 25.0%
! AAATAATCTAACCACTTCTT+AGG - chr1_2:72834904-72834923 None:intergenic 25.0%
!! AAGAAGTGGTTAGATTATTT+TGG + chr1_2:72834904-72834923 Msa0090720:intron 25.0%
! CTAACCATTATACTCTATAT+AGG - chr1_2:72834942-72834961 None:intergenic 25.0%
! CTATATAGAGTATAATGGTT+AGG + chr1_2:72834940-72834959 Msa0090720:intron 25.0%
!!! TGGAATATGACTTTTTCATT+TGG + chr1_2:72835117-72835136 Msa0090720:intron 25.0%
!!! ATGACTTTTTCATTTGGAAT+TGG + chr1_2:72835123-72835142 Msa0090720:intron 25.0%
! TGCTACTACTAAAAAATGAA+TGG - chr1_2:72835260-72835279 None:intergenic 25.0%
! AAAAAAGTTGTTTACTTGGA+TGG - chr1_2:72835312-72835331 None:intergenic 25.0%
! GACAAATTTATTTACATGTG+TGG + chr1_2:72835417-72835436 Msa0090720:intron 25.0%
!! TGTGTAACATCTTTTACTTT+AGG + chr1_2:72835801-72835820 Msa0090720:three_prime_UTR 25.0%
!! GTGTAACATCTTTTACTTTA+GGG + chr1_2:72835802-72835821 Msa0090720:three_prime_UTR 25.0%
! AACAAAGAGAATAAAGAAAG+AGG - chr1_2:72835843-72835862 None:intergenic 25.0%
!! TGAAAATTCCTTTAGGACAT+TGG - chr1_2:72832122-72832141 None:intergenic 30.0%
TAGAAAATGAGTAGTAGTTG+TGG + chr1_2:72832402-72832421 Msa0090720:exon 30.0%
ATCAACTGAAGAACAAGTTT+AGG - chr1_2:72832656-72832675 None:intergenic 30.0%
! TAAACTTGTTCTTCAGTTGA+TGG + chr1_2:72832655-72832674 Msa0090720:CDS 30.0%
!! TTCAGTTGATGGATATCAAA+GGG + chr1_2:72832666-72832685 Msa0090720:CDS 30.0%
AATGAAAATGAACCTGAAGA+TGG - chr1_2:72832715-72832734 None:intergenic 30.0%
ACATCTGGTTATCATAAAGA+AGG - chr1_2:72832790-72832809 None:intergenic 30.0%
! AATCCACAAGGGAATTATTT+TGG - chr1_2:72832995-72833014 None:intergenic 30.0%
TGCATAAAGAAAATCCACAA+GGG - chr1_2:72833006-72833025 None:intergenic 30.0%
ATGCATAAAGAAAATCCACA+AGG - chr1_2:72833007-72833026 None:intergenic 30.0%
AGACTACAATGCTCATTTAT+TGG + chr1_2:72833041-72833060 Msa0090720:intron 30.0%
TCCTTGTAGATTTCTTCTAA+TGG + chr1_2:72833119-72833138 Msa0090720:intron 30.0%
ACCATTAGAAGAAATCTACA+AGG - chr1_2:72833123-72833142 None:intergenic 30.0%
TGTAGCAAACATAATAGTAG+TGG - chr1_2:72833170-72833189 None:intergenic 30.0%
! TCTAATGAATGTGTTTTCTC+AGG + chr1_2:72833250-72833269 Msa0090720:intron 30.0%
!! AAGACATTGGTTTCTATGTT+GGG - chr1_2:72833287-72833306 None:intergenic 30.0%
GAATCTGATTCTTCTTTCAT+TGG + chr1_2:72833376-72833395 Msa0090720:CDS 30.0%
ACAGTAACAACTTCTCAAAA+AGG + chr1_2:72833401-72833420 Msa0090720:CDS 30.0%
TAAGTCCTTATGGTTTGATT+TGG + chr1_2:72833558-72833577 Msa0090720:intron 30.0%
ACATAGTCATAAAAGCAGTA+CGG - chr1_2:72833683-72833702 None:intergenic 30.0%
TTAGAGATTTGAAAGAAGTG+AGG - chr1_2:72833856-72833875 None:intergenic 30.0%
!!! CTGTTTTAATTTTTAGGTGG+TGG + chr1_2:72834093-72834112 Msa0090720:intron 30.0%
AATTTCTCTGTCAATGCTAT+AGG + chr1_2:72834139-72834158 Msa0090720:intron 30.0%
!! TGAACAAAAGTGAAAGTGTT+AGG - chr1_2:72834225-72834244 None:intergenic 30.0%
ACGACCTATATAGAGTATAA+TGG + chr1_2:72834935-72834954 Msa0090720:intron 30.0%
TCATATTCCAATAATTAGGC+AGG - chr1_2:72835107-72835126 None:intergenic 30.0%
! GTCCTTTTGTGCAATTTATA+TGG + chr1_2:72835162-72835181 Msa0090720:intron 30.0%
GACCATATAAATTGCACAAA+AGG - chr1_2:72835167-72835186 None:intergenic 30.0%
AGTAATAACACCACATTCAA+AGG - chr1_2:72835197-72835216 None:intergenic 30.0%
! TTTTAGTAGTAGCATGTACA+TGG + chr1_2:72835266-72835285 Msa0090720:intron 30.0%
ACTGGCAACAACAATTATTA+TGG + chr1_2:72835367-72835386 Msa0090720:intron 30.0%
GACAAAACACACTTAACAAA+TGG - chr1_2:72835443-72835462 None:intergenic 30.0%
GACAAGTAATGCTTCTTATT+CGG + chr1_2:72835613-72835632 Msa0090720:CDS 30.0%
TATCATCTACTGTGAATGAA+AGG + chr1_2:72835723-72835742 Msa0090720:CDS 30.0%
ATCAAATCAATTGCCACAAA+TGG - chr1_2:72835771-72835790 None:intergenic 30.0%
GTAATATCTGATCCTTCTGA+TGG - chr1_2:72832091-72832110 None:intergenic 35.0%
!! AGAGCTCTGAAAATTCCTTT+AGG - chr1_2:72832129-72832148 None:intergenic 35.0%
GAGAGAAAATGAAAAGACGA+AGG - chr1_2:72832162-72832181 None:intergenic 35.0%
!! ATAGTACTTTTTGCACCCTA+TGG - chr1_2:72832229-72832248 None:intergenic 35.0%
!! ATTTGTTTTTCCAAGAGGGT+TGG + chr1_2:72832357-72832376 Msa0090720:five_prime_UTR 35.0%
AACAAATATTCCAACCCTCT+TGG - chr1_2:72832370-72832389 None:intergenic 35.0%
!! CTTCAGTTGATGGATATCAA+AGG + chr1_2:72832665-72832684 Msa0090720:CDS 35.0%
GTTCCAAAATAATTCCCTTG+TGG + chr1_2:72832989-72833008 Msa0090720:intron 35.0%
GGCATCAACTAAATGCAAAA+GGG - chr1_2:72833067-72833086 None:intergenic 35.0%
TGGCATCAACTAAATGCAAA+AGG - chr1_2:72833068-72833087 None:intergenic 35.0%
!! TTAGTCTTCCTACACTGTTT+TGG - chr1_2:72833088-72833107 None:intergenic 35.0%
! ATGAATGTGTTTTCTCAGGT+AGG + chr1_2:72833254-72833273 Msa0090720:intron 35.0%
!! CAAGACATTGGTTTCTATGT+TGG - chr1_2:72833288-72833307 None:intergenic 35.0%
ATGTTGAGCATTCTTTGATG+AGG + chr1_2:72833350-72833369 Msa0090720:CDS 35.0%
GCAGAACAAGAAAGGAATAA+AGG + chr1_2:72833754-72833773 Msa0090720:CDS 35.0%
!! ATGAACAACAGTTTTGTGCA+TGG + chr1_2:72833777-72833796 Msa0090720:CDS 35.0%
TCTGGTAGCAAAGTTGAATT+GGG - chr1_2:72833821-72833840 None:intergenic 35.0%
ATCTGGTAGCAAAGTTGAAT+TGG - chr1_2:72833822-72833841 None:intergenic 35.0%
! TCAACTTTGCTACCAGATTT+TGG + chr1_2:72833824-72833843 Msa0090720:CDS 35.0%
GCATTTCAACTTCTACACTA+TGG + chr1_2:72834067-72834086 Msa0090720:intron 35.0%
ATATAGCTGCTTAAGAACCT+AGG + chr1_2:72834162-72834181 Msa0090720:intron 35.0%
AGAAAATGGGTCAGTTATTC+CGG - chr1_2:72834394-72834413 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG + chr1_2:72834563-72834582 Msa0090720:intron 35.0%
CCAAAGTAGGTCAATTAAAC+CGG + chr1_2:72834576-72834595 Msa0090720:intron 35.0%
CAAAGTAGGTCAATTAAACC+GGG + chr1_2:72834577-72834596 Msa0090720:intron 35.0%
! TTTTCACAACAGTAGAAGCA+AGG - chr1_2:72834680-72834699 None:intergenic 35.0%
GTTTGTTCCATTATTCTCCA+CGG + chr1_2:72834766-72834785 Msa0090720:intron 35.0%
! TTTTCAAAAAACCAACTCCG+TGG - chr1_2:72834786-72834805 None:intergenic 35.0%
ACTCTATATAGGTCGTACAA+GGG - chr1_2:72834931-72834950 None:intergenic 35.0%
TACTCTATATAGGTCGTACA+AGG - chr1_2:72834932-72834951 None:intergenic 35.0%
AAGTCACAATATGAGCCTTT+CGG - chr1_2:72835028-72835047 None:intergenic 35.0%
CAGTGAATGTCAAATAAAGG+AGG - chr1_2:72835076-72835095 None:intergenic 35.0%
GAGCAGTGAATGTCAAATAA+AGG - chr1_2:72835079-72835098 None:intergenic 35.0%
GTCAATTCTTCCTTTGAATG+TGG + chr1_2:72835184-72835203 Msa0090720:intron 35.0%
! TACATTACTAGCCTGTACAA+GGG - chr1_2:72835465-72835484 None:intergenic 35.0%
! TTACATTACTAGCCTGTACA+AGG - chr1_2:72835466-72835485 None:intergenic 35.0%
CTCCATTAATTGACCATGAA+GGG - chr1_2:72835502-72835521 None:intergenic 35.0%
ACTCCATTAATTGACCATGA+AGG - chr1_2:72835503-72835522 None:intergenic 35.0%
!! TAAGAAGCATTACTTGTCTG+AGG - chr1_2:72835611-72835630 None:intergenic 35.0%
! TTTTCTTGTTCCTACTCACT+GGG + chr1_2:72835878-72835897 Msa0090720:three_prime_UTR 35.0%
GAGAGAGGGGAATAAGTATA+AGG - chr1_2:72832184-72832203 None:intergenic 40.0%
TATGGAAAACAGAATCCAGC+TGG - chr1_2:72832211-72832230 None:intergenic 40.0%
! AGCTGGATTCTGTTTTCCAT+AGG + chr1_2:72832210-72832229 Msa0090720:five_prime_UTR 40.0%
! GCTGGATTCTGTTTTCCATA+GGG + chr1_2:72832211-72832230 Msa0090720:five_prime_UTR 40.0%
AGTAGTAGTTGTGGAAGAGA+AGG + chr1_2:72832411-72832430 Msa0090720:CDS 40.0%
ACAAAGCAACGATGAAGTTC+AGG - chr1_2:72832501-72832520 None:intergenic 40.0%
GTTCATGCTATTCAAACCCT+TGG + chr1_2:72832519-72832538 Msa0090720:CDS 40.0%
CTTACTATGATGACCTCCAA+GGG - chr1_2:72832538-72832557 None:intergenic 40.0%
ACTTACTATGATGACCTCCA+AGG - chr1_2:72832539-72832558 None:intergenic 40.0%
CTCTCATGCTTCTATACATC+TGG - chr1_2:72832805-72832824 None:intergenic 40.0%
! CAGATGTATAGAAGCATGAG+AGG + chr1_2:72832803-72832822 Msa0090720:intron 40.0%
! AGAAGCATGAGAGGTGAATT+AGG + chr1_2:72832812-72832831 Msa0090720:CDS 40.0%
AGAGGTGAATTAGGAAGACA+AGG + chr1_2:72832821-72832840 Msa0090720:CDS 40.0%
! AGTTGATGCCAAAACAGTGT+AGG + chr1_2:72833077-72833096 Msa0090720:intron 40.0%
CATCATGCTCTTCAAGACAT+TGG - chr1_2:72833300-72833319 None:intergenic 40.0%
! TGTCTTGAAGAGCATGATGA+TGG + chr1_2:72833301-72833320 Msa0090720:CDS 40.0%
AATGCCAATGCCAATACCAT+GGG + chr1_2:72833716-72833735 Msa0090720:CDS 40.0%
GTGAGGTTTATGCCAAAATC+TGG - chr1_2:72833839-72833858 None:intergenic 40.0%
CCTGAGAGAAATCAGATTCT+TGG - chr1_2:72833880-72833899 None:intergenic 40.0%
CCAAGAATCTGATTTCTCTC+AGG + chr1_2:72833877-72833896 Msa0090720:CDS 40.0%
!!! AATTTTTAGGTGGTGGAGTG+TGG + chr1_2:72834100-72834119 Msa0090720:intron 40.0%
!!! TGGAGTGTGGTATTGGTTTT+GGG + chr1_2:72834113-72834132 Msa0090720:intron 40.0%
ATGGCTATGGCTATAGTAGT+AGG + chr1_2:72834187-72834206 Msa0090720:intron 40.0%
AACGTGGATCCCAAAATGAA+AGG - chr1_2:72834283-72834302 None:intergenic 40.0%
GAAAAGAGAATGCATTGCAC+GGG - chr1_2:72834333-72834352 None:intergenic 40.0%
GGAAAAGAGAATGCATTGCA+CGG - chr1_2:72834334-72834353 None:intergenic 40.0%
GAAAATGGGTCAGTTATTCC+GGG - chr1_2:72834393-72834412 None:intergenic 40.0%
CCGGTTTAATTGACCTACTT+TGG - chr1_2:72834579-72834598 None:intergenic 40.0%
AGTCTTGACTTACCAGAAGA+TGG - chr1_2:72834649-72834668 None:intergenic 40.0%
TTCTGGTAAGTCAAGACTGT+GGG + chr1_2:72834651-72834670 Msa0090720:intron 40.0%
TTCATTCAGCGTTTCAAACG+TGG - chr1_2:72834809-72834828 None:intergenic 40.0%
TTGTTTGCATTGTGACCGAA+AGG + chr1_2:72835010-72835029 Msa0090720:intron 40.0%
AGCCCTTCATGGTCAATTAA+TGG + chr1_2:72835497-72835516 Msa0090720:CDS 40.0%
AGAGCACATGTAGAAGTTGA+AGG + chr1_2:72835536-72835555 Msa0090720:CDS 40.0%
CATGTAGAAGTTGAAGGAGT+AGG + chr1_2:72835542-72835561 Msa0090720:CDS 40.0%
!! AATTGCCTCACTGATTTCAC+TGG - chr1_2:72835639-72835658 None:intergenic 40.0%
GACCTATCTTTAGCCATTTG+TGG + chr1_2:72835755-72835774 Msa0090720:CDS 40.0%
TGCCACAAATGGCTAAAGAT+AGG - chr1_2:72835760-72835779 None:intergenic 40.0%
! CTTTTCTTGTTCCTACTCAC+TGG + chr1_2:72835877-72835896 Msa0090720:three_prime_UTR 40.0%
TTTCTTGTTCCTACTCACTG+GGG + chr1_2:72835879-72835898 Msa0090720:three_prime_UTR 40.0%
!! CTTTAGGACATTGGTGTCAC+TGG - chr1_2:72832113-72832132 None:intergenic 45.0%
CAGTGACACCAATGTCCTAA+AGG + chr1_2:72832111-72832130 Msa0090720:five_prime_UTR 45.0%
AGTAGTTGTGGAAGAGAAGG+AGG + chr1_2:72832414-72832433 Msa0090720:CDS 45.0%
CAAAAGTCCCTCGTTTGAGA+TGG + chr1_2:72832472-72832491 Msa0090720:CDS 45.0%
CATGCTATTCAAACCCTTGG+AGG + chr1_2:72832522-72832541 Msa0090720:CDS 45.0%
!! CATGGTATTGGCATTGGCAT+TGG - chr1_2:72833717-72833736 None:intergenic 45.0%
CAATGCCAATGCCAATACCA+TGG + chr1_2:72833715-72833734 Msa0090720:CDS 45.0%
!! ATCACCCATGGTATTGGCAT+TGG - chr1_2:72833723-72833742 None:intergenic 45.0%
!! AACAGTTTTGTGCATGGCAG+AGG + chr1_2:72833783-72833802 Msa0090720:CDS 45.0%
GGTAGCAAAGTTGAATTGGG+TGG - chr1_2:72833818-72833837 None:intergenic 45.0%
!!! GTGGAGTGTGGTATTGGTTT+TGG + chr1_2:72834112-72834131 Msa0090720:intron 45.0%
CTGCTTAAGAACCTAGGCTA+TGG + chr1_2:72834168-72834187 Msa0090720:intron 45.0%
AAGAACCTAGGCTATGGCTA+TGG + chr1_2:72834174-72834193 Msa0090720:intron 45.0%
TATAGCCATAGCCATAGCCT+AGG - chr1_2:72834182-72834201 None:intergenic 45.0%
!! CCAACGGTTTGGTATTAACG+TGG - chr1_2:72834299-72834318 None:intergenic 45.0%
CCACGTTAATACCAAACCGT+TGG + chr1_2:72834296-72834315 Msa0090720:intron 45.0%
CATCTGAGAAACCAACGGTT+TGG - chr1_2:72834310-72834329 None:intergenic 45.0%
GTAGGTCAATTAAACCGGGA+CGG + chr1_2:72834581-72834600 Msa0090720:intron 45.0%
CTTCTGGTAAGTCAAGACTG+TGG + chr1_2:72834650-72834669 Msa0090720:intron 45.0%
TCTGGTAAGTCAAGACTGTG+GGG + chr1_2:72834652-72834671 Msa0090720:intron 45.0%
TCCATTATTCTCCACGGAGT+TGG + chr1_2:72834772-72834791 Msa0090720:intron 45.0%
ACCAACTCCGTGGAGAATAA+TGG - chr1_2:72834776-72834795 None:intergenic 45.0%
TTTAATCGGGGCCTAAGAAG+TGG + chr1_2:72834890-72834909 Msa0090720:intron 45.0%
TCCTGCTCCTGCCTAATTAT+TGG + chr1_2:72835097-72835116 Msa0090720:intron 45.0%
TCCAATAATTAGGCAGGAGC+AGG - chr1_2:72835101-72835120 None:intergenic 45.0%
! GTGTGTTTTGTCCCTTGTAC+AGG + chr1_2:72835451-72835470 Msa0090720:intron 45.0%
ATGACAGAAAGAGCCCTTCA+TGG + chr1_2:72835486-72835505 Msa0090720:CDS 45.0%
GTAGAAGTTGAAGGAGTAGG+AGG + chr1_2:72835545-72835564 Msa0090720:CDS 45.0%
! GCATTACTTGTCTGAGGTGA+AGG - chr1_2:72835605-72835624 None:intergenic 45.0%
TTGTAGCTGCTAAACCCATC+AGG - chr1_2:72835689-72835708 None:intergenic 45.0%
!! TGATGGGTTTAGCAGCTACA+AGG + chr1_2:72835688-72835707 Msa0090720:CDS 45.0%
TTCTTGTTCCTACTCACTGG+GGG + chr1_2:72835880-72835899 Msa0090720:three_prime_UTR 45.0%
ATCCAGCTGGAAGAGAGAGA+GGG - chr1_2:72832198-72832217 None:intergenic 50.0%
AATCCAGCTGGAAGAGAGAG+AGG - chr1_2:72832199-72832218 None:intergenic 50.0%
AGTTGTGGAAGAGAAGGAGG+AGG + chr1_2:72832417-72832436 Msa0090720:CDS 50.0%
CAGGAGTCCATCTCAAACGA+GGG - chr1_2:72832482-72832501 None:intergenic 50.0%
TCAGGAGTCCATCTCAAACG+AGG - chr1_2:72832483-72832502 None:intergenic 50.0%
ACACGTCAAGAGCCATCTTC+AGG + chr1_2:72832700-72832719 Msa0090720:CDS 50.0%
CTGCAGATCACCCATGGTAT+TGG - chr1_2:72833729-72833748 None:intergenic 50.0%
CAGCAGCTGCAGAACAAGAA+AGG + chr1_2:72833746-72833765 Msa0090720:CDS 50.0%
!! TAGGTGGTGGAGTGTGGTAT+TGG + chr1_2:72834106-72834125 Msa0090720:intron 50.0%
ACGGGCATCTGAGAAACCAA+CGG - chr1_2:72834315-72834334 None:intergenic 50.0%
! ACTTTTTACTCCCTCCGTCC+CGG + chr1_2:72834372-72834391 Msa0090720:intron 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - chr1_2:72834389-72834408 None:intergenic 50.0%
GTCAATTAAACCGGGACGGA+GGG + chr1_2:72834585-72834604 Msa0090720:intron 50.0%
TTCGGCCAGTGAAATCAGTG+AGG + chr1_2:72835631-72835650 Msa0090720:CDS 50.0%
TGCTAAACCCATCAGGACCA+GGG - chr1_2:72835682-72835701 None:intergenic 50.0%
TCCAGCTGGAAGAGAGAGAG+GGG - chr1_2:72832197-72832216 None:intergenic 55.0%
GGAAGAGAAGGAGGAGGATC+AGG + chr1_2:72832423-72832442 Msa0090720:CDS 55.0%
AGAGAAGGAGGAGGATCAGG+AGG + chr1_2:72832426-72832445 Msa0090720:CDS 55.0%
GTCAGTTATTCCGGGACGGA+GGG - chr1_2:72834385-72834404 None:intergenic 55.0%
GGTCAATTAAACCGGGACGG+AGG + chr1_2:72834584-72834603 Msa0090720:intron 55.0%
ACATTCTACTCCCTCCGTCC+CGG - chr1_2:72834598-72834617 None:intergenic 55.0%
ACCCATCAGGACCAGGGTTA+GGG - chr1_2:72835676-72835695 None:intergenic 55.0%
AACCCATCAGGACCAGGGTT+AGG - chr1_2:72835677-72835696 None:intergenic 55.0%
CTGCTAAACCCATCAGGACC+AGG - chr1_2:72835683-72835702 None:intergenic 55.0%
TCCCCTCTCTCTCTTCCAGC+TGG + chr1_2:72832193-72832212 Msa0090720:five_prime_UTR 60.0%
GAGGATCAGGAGGAGCAGTG+AGG + chr1_2:72832436-72832455 Msa0090720:CDS 60.0%
CAGCTGCTGCAGATCACCCA+TGG - chr1_2:72833735-72833754 None:intergenic 60.0%
GGTCAGTTATTCCGGGACGG+AGG - chr1_2:72834386-72834405 None:intergenic 60.0%
CCATCAGGACCAGGGTTAGG+GGG - chr1_2:72835674-72835693 None:intergenic 60.0%
CCCATCAGGACCAGGGTTAG+GGG - chr1_2:72835675-72835694 None:intergenic 60.0%
CCCCTAACCCTGGTCCTGAT+GGG + chr1_2:72835672-72835691 Msa0090720:CDS 60.0%
TGCATGCACCCCCAGTGAGT+AGG - chr1_2:72835891-72835910 None:intergenic 60.0%
TGCTGTCCTCCCCCTAACCC+TGG + chr1_2:72835662-72835681 Msa0090720:CDS 65.0%
TCAGGACCAGGGTTAGGGGG+AGG - chr1_2:72835671-72835690 None:intergenic 65.0%
CCCCCTAACCCTGGTCCTGA+TGG + chr1_2:72835671-72835690 Msa0090720:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 72832085 72835918 72832085 ID=Msa0090720;Name=Msa0090720
chr1_2 mRNA 72832085 72835918 72832085 ID=Msa0090720-mRNA-1;Parent=Msa0090720;Name=Msa0090720-mRNA-1;_AED=0.06;_eAED=0.06;_QI=323|1|1|1|1|1|6|134|341
chr1_2 exon 72832085 72832552 72832085 ID=Msa0090720-mRNA-1:exon:25304;Parent=Msa0090720-mRNA-1
chr1_2 exon 72832645 72832721 72832645 ID=Msa0090720-mRNA-1:exon:25305;Parent=Msa0090720-mRNA-1
chr1_2 exon 72832806 72832842 72832806 ID=Msa0090720-mRNA-1:exon:25306;Parent=Msa0090720-mRNA-1
chr1_2 exon 72833272 72833422 72833272 ID=Msa0090720-mRNA-1:exon:25307;Parent=Msa0090720-mRNA-1
chr1_2 exon 72833595 72833898 72833595 ID=Msa0090720-mRNA-1:exon:25308;Parent=Msa0090720-mRNA-1
chr1_2 exon 72835473 72835918 72835473 ID=Msa0090720-mRNA-1:exon:25309;Parent=Msa0090720-mRNA-1
chr1_2 five_prime_UTR 72832085 72832407 72832085 ID=Msa0090720-mRNA-1:five_prime_utr;Parent=Msa0090720-mRNA-1
chr1_2 CDS 72832408 72832552 72832408 ID=Msa0090720-mRNA-1:cds;Parent=Msa0090720-mRNA-1
chr1_2 CDS 72832645 72832721 72832645 ID=Msa0090720-mRNA-1:cds;Parent=Msa0090720-mRNA-1
chr1_2 CDS 72832806 72832842 72832806 ID=Msa0090720-mRNA-1:cds;Parent=Msa0090720-mRNA-1
chr1_2 CDS 72833272 72833422 72833272 ID=Msa0090720-mRNA-1:cds;Parent=Msa0090720-mRNA-1
chr1_2 CDS 72833595 72833898 72833595 ID=Msa0090720-mRNA-1:cds;Parent=Msa0090720-mRNA-1
chr1_2 CDS 72835473 72835784 72835473 ID=Msa0090720-mRNA-1:cds;Parent=Msa0090720-mRNA-1
chr1_2 three_prime_UTR 72835785 72835918 72835785 ID=Msa0090720-mRNA-1:three_prime_utr;Parent=Msa0090720-mRNA-1
Gene Sequence

>Msa0090720

ATGAGTAGTAGTTGTGGAAGAGAAGGAGGAGGATCAGGAGGAGCAGTGAGGCAGTATATAAGATCAAAAGTCCCTCGTTTGAGATGGACTCCTGAACTTCATCGTTGCTTTGTTCATGCTATTCAAACCCTTGGAGGTCATCATAAGGCTACTCCTAAACTTGTTCTTCAGTTGATGGATATCAAAGGGCTCACTATTTCACACGTCAAGAGCCATCTTCAGATGTATAGAAGCATGAGAGGTGAATTAGGAAGACAAGGTAGGACAAGCTCCCAACATAGAAACCAATGTCTTGAAGAGCATGATGATGGATGTGTTGATGAAGTGAATGATGTTAATGTTGAGCATTCTTTGATGAGGAGAGAATCTGATTCTTCTTTCATTGGTCACAGTAACAACTTCTCAAAAAGAGCTAGAATCGAGAGAAGAAGTTCTACAACTAGTCTGCAATGCAGCAGTGAAAGAAGAAGAATATGTGATGATGCAGTAACAAAACCGTACTGCTTTTATGACTATGTACAGCTCAATGCCAATGCCAATGCCAATACCATGGGTGATCTGCAGCAGCTGCAGAACAAGAAAGGAATAAAGGATGAACAACAGTTTTGTGCATGGCAGAGGCAAATTCAACCACCCAATTCAACTTTGCTACCAGATTTTGGCATAAACCTCACTTCTTTCAAATCTCTAAACCAAGAATCTGATTTCTCTCAGGCTAGTAATGTAAATGACAGAAAGAGCCCTTCATGGTCAATTAATGGAGTTGTGAAAACTGACAGAGCACATGTAGAAGTTGAAGGAGTAGGAGGACATGAGTTGTCATTGTCGTTAACATTGCAAAATCCTTCACCTCAGACAAGTAATGCTTCTTATTCGGCCAGTGAAATCAGTGAGGCAATTTCATGCTGTCCTCCCCCTAACCCTGGTCCTGATGGGTTTAGCAGCTACAAGGACTGCTCTAGAATATCATCTACTGTGAATGAAAGGATTAATTTAGACCTATCTTTAGCCATTTGTGGCAATTGA
Protein sequence

>Msa0090720

MSSSCGREGGGSGGAVRQYIRSKVPRLRWTPELHRCFVHAIQTLGGHHKATPKLVLQLMDIKGLTISHVKSHLQMYRSMRGELGRQGRTSSQHRNQCLEEHDDGCVDEVNDVNVEHSLMRRESDSSFIGHSNNFSKRARIERRSSTTSLQCSSERRRICDDAVTKPYCFYDYVQLNANANANTMGDLQQLQNKKGIKDEQQFCAWQRQIQPPNSTLLPDFGINLTSFKSLNQESDFSQASNVNDRKSPSWSINGVVKTDRAHVEVEGVGGHELSLSLTLQNPSPQTSNASYSASEISEAISCCPPPNPGPDGFSSYKDCSRISSTVNERINLDLSLAICGN*