AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0183690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0183690 MtrunA17_Chr1g0210911 89.943 348 10 7 1 337 1 334 0.0 602
Msa0183690 MtrunA17_Chr1g0162931 47.463 335 119 15 3 334 2 282 8.15e-77 237
Msa0183690 MtrunA17_Chr2g0320231 60.870 92 33 2 8 99 81 169 1.20e-31 122
Msa0183690 MtrunA17_Chr2g0288601 69.118 68 21 0 8 75 55 122 6.37e-29 108
Msa0183690 MtrunA17_Chr7g0243081 64.557 79 28 0 2 80 49 127 2.01e-28 112
Msa0183690 MtrunA17_Chr8g0379121 69.697 66 20 0 15 80 102 167 3.57e-28 113
Msa0183690 MtrunA17_Chr2g0283951 60.227 88 29 3 4 85 68 155 9.71e-26 105
Msa0183690 MtrunA17_Chr3g0095611 57.971 69 29 0 14 82 9 77 5.67e-24 97.8
Msa0183690 MtrunA17_Chr5g0410741 47.170 106 49 3 23 127 218 317 9.85e-22 95.1
Msa0183690 MtrunA17_Chr6g0479431 63.793 58 21 0 23 80 201 258 2.82e-21 93.2
Msa0183690 MtrunA17_Chr8g0366281 65.517 58 20 0 23 80 172 229 3.02e-21 93.2
Msa0183690 MtrunA17_Chr1g0154261 59.091 66 25 1 15 80 119 182 9.72e-21 90.9
Msa0183690 MtrunA17_Chr3g0109981 63.793 58 21 0 23 80 273 330 3.23e-20 91.3
Msa0183690 MtrunA17_Chr1g0190301 67.857 56 18 0 25 80 176 231 7.43e-20 89.4
Msa0183690 MtrunA17_Chr7g0261911 66.071 56 19 0 25 80 263 318 1.94e-19 89.0
Msa0183690 MtrunA17_Chr7g0274471 66.071 56 19 0 25 80 219 274 4.62e-19 87.8
Msa0183690 MtrunA17_Chr5g0409731 48.421 95 43 2 1 94 1 90 3.39e-18 83.6
Msa0183690 MtrunA17_Chr5g0417521 47.778 90 37 3 25 109 16 100 3.95e-17 81.3
Msa0183690 MtrunA17_Chr6g0461641 55.882 68 30 0 25 92 43 110 3.98e-17 81.6
Msa0183690 MtrunA17_Chr1g0197171 36.170 141 72 3 25 162 45 170 1.21e-16 79.3
Msa0183690 MtrunA17_Chr2g0321461 62.264 53 20 0 25 77 46 98 6.07e-16 78.2
Msa0183690 MtrunA17_Chr8g0356501 56.452 62 22 1 25 86 38 94 2.21e-15 76.3
Msa0183690 MtrunA17_Chr7g0258551 54.098 61 28 0 20 80 208 268 2.61e-15 76.3
Msa0183690 MtrunA17_Chr2g0290991 56.452 62 22 1 25 86 40 96 4.46e-15 74.7
Msa0183690 MtrunA17_Chr2g0310011 56.452 62 22 1 25 86 36 92 4.80e-15 75.1
Msa0183690 MtrunA17_Chr4g0042451 55.932 59 26 0 25 83 18 76 7.01e-15 74.7
Msa0183690 MtrunA17_Chr7g0254981 65.385 52 18 0 26 77 52 103 7.98e-15 73.6
Msa0183690 MtrunA17_Chr2g0291021 65.385 52 18 0 26 77 51 102 8.36e-15 74.3
Msa0183690 MtrunA17_Chr1g0175091 63.462 52 19 0 26 77 260 311 9.68e-15 74.7
Msa0183690 MtrunA17_Chr1g0175071 35.484 124 66 2 2 123 155 266 2.42e-14 72.8
Msa0183690 MtrunA17_Chr1g0175081 55.769 52 23 0 26 77 24 75 9.87e-13 63.9
Msa0183690 MtrunA17_Chr4g0045361 61.224 49 19 0 29 77 279 327 1.39e-12 68.2
Msa0183690 MtrunA17_Chr4g0009901 43.662 71 39 1 7 77 151 220 4.46e-12 65.5
Msa0183690 MtrunA17_Chr4g0062921 59.184 49 20 0 29 77 240 288 5.40e-12 66.6
Msa0183690 MtrunA17_Chr5g0402631 59.184 49 20 0 29 77 219 267 2.84e-11 63.9
Msa0183690 MtrunA17_Chr4g0031961 50.794 63 30 1 15 77 122 183 3.79e-11 63.2
Msa0183690 MtrunA17_Chr5g0422621 55.102 49 22 0 29 77 203 251 8.16e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0183690 AT1G14600.1 72.152 79 22 0 5 83 4 82 4.54e-34 126
Msa0183690 AT2G02060.2 69.512 82 20 1 1 77 1 82 1.99e-33 124
Msa0183690 AT2G02060.1 69.512 82 20 1 1 77 1 82 1.99e-33 124
Msa0183690 AT4G04605.1 70.149 67 20 0 16 82 6 72 7.89e-29 111
Msa0183690 AT2G40260.1 65.789 76 26 0 12 87 70 145 4.03e-28 113
Msa0183690 AT2G42660.1 55.319 94 39 1 16 106 42 135 3.23e-27 107
Msa0183690 AT2G38300.1 54.737 95 41 1 1 95 31 123 3.15e-26 107
Msa0183690 AT4G04555.1 54.054 74 34 0 13 86 3 76 3.14e-22 90.1
Msa0183690 AT5G42630.2 43.363 113 58 3 6 113 86 197 2.28e-21 91.3
Msa0183690 AT5G42630.1 43.363 113 58 3 6 113 86 197 2.52e-21 92.4
Msa0183690 AT4G17695.1 62.712 59 22 0 23 81 163 221 4.05e-21 92.8
Msa0183690 AT1G32240.2 63.793 58 21 0 23 80 212 269 1.65e-20 91.7
Msa0183690 AT1G32240.1 63.793 58 21 0 23 80 212 269 1.83e-20 91.7
Msa0183690 AT5G16560.1 63.793 58 21 0 23 80 218 275 4.36e-20 90.9
Msa0183690 AT4G04580.1 56.716 67 29 0 16 82 6 72 3.02e-19 84.0
Msa0183690 AT4G28610.1 63.636 55 20 0 26 80 227 281 4.51e-18 85.1
Msa0183690 AT5G45580.1 53.333 75 35 0 21 95 4 78 1.09e-17 82.0
Msa0183690 AT5G45580.2 53.333 75 35 0 21 95 20 94 1.55e-17 82.0
Msa0183690 AT3G24120.1 42.017 119 56 4 25 141 42 149 1.71e-17 82.0
Msa0183690 AT3G24120.2 42.017 119 56 4 25 141 42 149 1.74e-17 82.0
Msa0183690 AT3G04450.3 63.636 55 20 0 26 80 240 294 2.18e-17 82.0
Msa0183690 AT3G04450.4 63.636 55 20 0 26 80 200 254 2.84e-17 82.4
Msa0183690 AT3G04450.2 63.636 55 20 0 26 80 200 254 2.84e-17 82.4
Msa0183690 AT3G04450.1 63.636 55 20 0 26 80 240 294 3.32e-17 82.4
Msa0183690 AT5G29000.1 63.636 55 20 0 26 80 190 244 4.01e-17 82.0
Msa0183690 AT5G29000.3 63.636 55 20 0 26 80 190 244 4.01e-17 82.0
Msa0183690 AT5G29000.2 63.636 55 20 0 26 80 233 287 5.29e-17 81.6
Msa0183690 AT5G29000.4 63.636 55 20 0 26 80 233 287 5.46e-17 80.9
Msa0183690 AT4G13640.1 48.276 87 35 2 25 111 38 114 3.15e-16 78.2
Msa0183690 AT2G06020.1 38.182 110 59 3 7 107 66 175 3.27e-16 78.6
Msa0183690 AT2G20400.1 61.818 55 21 0 26 80 233 287 3.36e-16 79.3
Msa0183690 AT2G20400.2 61.818 55 21 0 26 80 233 287 3.41e-16 79.3
Msa0183690 AT4G13640.2 48.276 87 35 2 25 111 38 114 3.59e-16 78.2
Msa0183690 AT3G12730.1 49.351 77 33 2 25 100 24 95 4.25e-16 77.0
Msa0183690 AT5G18240.2 50.725 69 34 0 9 77 30 98 5.92e-16 78.6
Msa0183690 AT5G18240.3 50.725 69 34 0 9 77 30 98 5.92e-16 78.6
Msa0183690 AT5G18240.5 50.725 69 34 0 9 77 30 98 7.15e-16 78.6
Msa0183690 AT5G18240.1 50.725 69 34 0 9 77 30 98 7.29e-16 78.6
Msa0183690 AT5G18240.4 50.725 69 34 0 9 77 30 98 7.29e-16 78.6
Msa0183690 AT3G13040.3 65.385 52 18 0 26 77 243 294 8.17e-16 78.6
Msa0183690 AT3G13040.1 65.385 52 18 0 26 77 243 294 8.17e-16 78.6
Msa0183690 AT3G13040.2 65.385 52 18 0 26 77 243 294 8.17e-16 78.6
Msa0183690 AT3G04030.1 58.491 53 22 0 25 77 46 98 1.28e-15 77.4
Msa0183690 AT3G04030.3 58.491 53 22 0 25 77 46 98 1.54e-15 77.4
Msa0183690 AT1G79430.2 56.452 62 22 1 25 86 35 91 3.47e-15 75.9
Msa0183690 AT2G01060.1 65.385 52 18 0 26 77 17 68 4.44e-15 75.1
Msa0183690 AT1G69580.1 46.341 82 40 2 25 103 35 115 2.27e-14 73.6
Msa0183690 AT1G69580.2 46.341 82 40 2 25 103 35 115 2.37e-14 73.6
Msa0183690 AT1G25550.1 63.265 49 18 0 29 77 214 262 1.01e-13 71.6
Msa0183690 AT5G06800.3 61.538 52 20 0 26 77 194 245 1.47e-13 70.5
Msa0183690 AT5G06800.1 61.538 52 20 0 26 77 194 245 3.62e-13 70.1
Msa0183690 AT5G06800.2 61.538 52 20 0 26 77 194 245 3.66e-13 70.1
Msa0183690 AT3G04030.2 54.717 53 23 1 25 77 46 97 6.94e-13 69.3
Msa0183690 AT1G25550.2 47.826 69 36 0 9 77 194 262 1.34e-12 67.8
Msa0183690 AT2G03500.1 59.184 49 20 0 29 77 238 286 5.40e-12 67.0
Msa0183690 AT5G44190.1 48.571 70 34 2 23 91 146 214 6.94e-12 66.2
Msa0183690 AT5G44190.2 48.571 70 34 2 23 91 146 214 8.57e-12 65.9
Msa0183690 AT4G37180.1 54.237 59 27 0 19 77 205 263 8.89e-12 65.9
Msa0183690 AT5G59570.2 53.571 56 25 1 22 77 139 193 9.96e-12 65.1
Msa0183690 AT5G59570.1 53.571 56 25 1 22 77 139 193 9.96e-12 65.1
Msa0183690 AT4G37180.2 54.237 59 27 0 19 77 212 270 1.13e-11 65.5
Msa0183690 AT1G68670.1 59.184 49 20 0 29 77 220 268 1.99e-11 64.7
Msa0183690 AT1G13300.1 46.479 71 32 1 7 77 170 234 4.77e-11 63.5
Msa0183690 AT5G58080.1 50.000 72 30 2 6 77 181 246 4.79e-11 64.3
Msa0183690 AT3G46640.2 52.727 55 25 1 23 77 143 196 5.96e-11 63.2
Msa0183690 AT3G46640.1 52.727 55 25 1 23 77 143 196 5.96e-11 63.2
Msa0183690 AT3G46640.3 45.333 75 40 1 3 77 123 196 7.01e-11 62.8

Find 92 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACTTTGCTACCAGATTT+TGG 0.184199 1_4:-72646755 Msa0183690:CDS
CCTGAGAGAAATCAGATTCT+TGG 0.196675 1_4:+72646702 None:intergenic
TAAACTTGTTCTTCAGTTGA+TGG 0.274648 1_4:-72647912 Msa0183690:CDS
AGAAGCATGAGAGGTGAATT+AGG 0.294301 1_4:-72647755 Msa0183690:CDS
ATCTGGTAGCAAAGTTGAAT+TGG 0.294548 1_4:+72646760 None:intergenic
AGCCCTTCATGGTCAATTAA+TGG 0.311061 1_4:-72645056 Msa0183690:CDS
GACAAGTAATGCTTCTTATT+CGG 0.316581 1_4:-72644940 Msa0183690:CDS
GAGAGAGGGGAATAAGTATA+AGG 0.332664 1_4:+72648385 None:intergenic
GGAAGAGAAGGAGGAGGATC+AGG 0.336536 1_4:-72648143 Msa0183690:CDS
TCCCCTCTCTCTCTTCCAGC+TGG 0.347792 1_4:-72648373 Msa0183690:five_prime_UTR
GAATCTGATTCTTCTTTCAT+TGG 0.354755 1_4:-72647191 Msa0183690:CDS
CAAGACATTGGTTTCTATGT+TGG 0.368948 1_4:+72647282 None:intergenic
AGAGCTCTGAAAATTCCTTT+AGG 0.369266 1_4:+72648440 None:intergenic
ACAGTAACAACTTCTCAAAA+AGG 0.375282 1_4:-72647166 Msa0183690:intron
AACAAATATTCCAACCCTCT+TGG 0.376468 1_4:+72648199 None:intergenic
AAGACATTGGTTTCTATGTT+GGG 0.380947 1_4:+72647283 None:intergenic
GCAGAACAAGAAAGGAATAA+AGG 0.382336 1_4:-72646825 Msa0183690:CDS
ACCCATCAGGACCAGGGTTA+GGG 0.390120 1_4:+72644880 None:intergenic
GACCTATCTTTAGCCATTTG+TGG 0.393044 1_4:-72644798 Msa0183690:CDS
AACCCATCAGGACCAGGGTT+AGG 0.394026 1_4:+72644879 None:intergenic
ATCAACTGAAGAACAAGTTT+AGG 0.398456 1_4:+72647914 None:intergenic
ATCAAATCAATTGCCACAAA+TGG 0.410193 1_4:+72644785 None:intergenic
CTTTAGGACATTGGTGTCAC+TGG 0.428624 1_4:+72648456 None:intergenic
ACAAAGCAACGATGAAGTTC+AGG 0.428827 1_4:+72648068 None:intergenic
CTGCAGATCACCCATGGTAT+TGG 0.429020 1_4:+72646853 None:intergenic
ACACGTCAAGAGCCATCTTC+AGG 0.432180 1_4:-72647867 Msa0183690:intron
GTGAGGTTTATGCCAAAATC+TGG 0.438737 1_4:+72646743 None:intergenic
ATGACAGAAAGAGCCCTTCA+TGG 0.449662 1_4:-72645067 Msa0183690:CDS
TGAAAATTCCTTTAGGACAT+TGG 0.453439 1_4:+72648447 None:intergenic
CCCCTAACCCTGGTCCTGAT+GGG 0.456881 1_4:-72644881 Msa0183690:CDS
AGTAGTAGTTGTGGAAGAGA+AGG 0.462888 1_4:-72648155 Msa0183690:CDS
GTTCATGCTATTCAAACCCT+TGG 0.466593 1_4:-72648047 Msa0183690:CDS
TAGAAAATGAGTAGTAGTTG+TGG 0.467194 1_4:-72648164 Msa0183690:exon
CATGGTATTGGCATTGGCAT+TGG 0.470956 1_4:+72646865 None:intergenic
TCTGGTAGCAAAGTTGAATT+GGG 0.475643 1_4:+72646761 None:intergenic
CTGCTAAACCCATCAGGACC+AGG 0.477057 1_4:+72644873 None:intergenic
CATCATGCTCTTCAAGACAT+TGG 0.479410 1_4:+72647270 None:intergenic
TGCCACAAATGGCTAAAGAT+AGG 0.479487 1_4:+72644796 None:intergenic
AGTTGTGGAAGAGAAGGAGG+AGG 0.483366 1_4:-72648149 Msa0183690:CDS
AGTAGTTGTGGAAGAGAAGG+AGG 0.488905 1_4:-72648152 Msa0183690:CDS
CCAAGAATCTGATTTCTCTC+AGG 0.491648 1_4:-72646702 Msa0183690:intron
GCATTACTTGTCTGAGGTGA+AGG 0.495350 1_4:+72644951 None:intergenic
TTCAGTTGATGGATATCAAA+GGG 0.496688 1_4:-72647901 Msa0183690:CDS
CATGCTATTCAAACCCTTGG+AGG 0.504028 1_4:-72648044 Msa0183690:CDS
TTGTAGCTGCTAAACCCATC+AGG 0.505555 1_4:+72644867 None:intergenic
AGAGCACATGTAGAAGTTGA+AGG 0.510912 1_4:-72645017 Msa0183690:CDS
CAGCAGCTGCAGAACAAGAA+AGG 0.510940 1_4:-72646833 Msa0183690:CDS
CAGTGACACCAATGTCCTAA+AGG 0.511162 1_4:-72648455 Msa0183690:five_prime_UTR
AATTGCCTCACTGATTTCAC+TGG 0.511384 1_4:+72644917 None:intergenic
CATGTAGAAGTTGAAGGAGT+AGG 0.522933 1_4:-72645011 Msa0183690:CDS
AATGAAAATGAACCTGAAGA+TGG 0.525028 1_4:+72647855 None:intergenic
AACAAAGAGAATAAAGAAAG+AGG 0.533584 1_4:+72644713 None:intergenic
CAAAAGTCCCTCGTTTGAGA+TGG 0.534114 1_4:-72648094 Msa0183690:CDS
ATCACCCATGGTATTGGCAT+TGG 0.534408 1_4:+72646859 None:intergenic
TTAGAGATTTGAAAGAAGTG+AGG 0.544979 1_4:+72646726 None:intergenic
TTATATTTATACAAAGAAGA+GGG 0.546172 1_4:+72648305 None:intergenic
CTCCATTAATTGACCATGAA+GGG 0.546656 1_4:+72645054 None:intergenic
TATGGAAAACAGAATCCAGC+TGG 0.547701 1_4:+72648358 None:intergenic
TATCATCTACTGTGAATGAA+AGG 0.549767 1_4:-72644830 Msa0183690:CDS
CTTCAGTTGATGGATATCAA+AGG 0.552892 1_4:-72647902 Msa0183690:CDS
TGTCTTGAAGAGCATGATGA+TGG 0.559094 1_4:-72647266 Msa0183690:CDS
AATCCAGCTGGAAGAGAGAG+AGG 0.561102 1_4:+72648370 None:intergenic
GTAATATCTGATCCTTCTGA+TGG 0.563151 1_4:+72648478 None:intergenic
TTTATATTTATACAAAGAAG+AGG 0.563610 1_4:+72648304 None:intergenic
TGATGGGTTTAGCAGCTACA+AGG 0.568771 1_4:-72644865 Msa0183690:CDS
TTCTTGTTCCTACTCACTGG+GGG 0.569559 1_4:-72644673 Msa0183690:three_prime_UTR
CCCATCAGGACCAGGGTTAG+GGG 0.569771 1_4:+72644881 None:intergenic
ACTCCATTAATTGACCATGA+AGG 0.571573 1_4:+72645053 None:intergenic
GAGAGAAAATGAAAAGACGA+AGG 0.571611 1_4:+72648407 None:intergenic
CAGCTGCTGCAGATCACCCA+TGG 0.582133 1_4:+72646847 None:intergenic
GTAGAAGTTGAAGGAGTAGG+AGG 0.587674 1_4:-72645008 Msa0183690:CDS
ATGTTGAGCATTCTTTGATG+AGG 0.590128 1_4:-72647217 Msa0183690:CDS
TCCAGCTGGAAGAGAGAGAG+GGG 0.595971 1_4:+72648372 None:intergenic
ATCCAGCTGGAAGAGAGAGA+GGG 0.606721 1_4:+72648371 None:intergenic
GCATAGTCATAAAAGCAGTA+CGG 0.607773 1_4:+72646887 None:intergenic
CAGATGTATAGAAGCATGAG+AGG 0.614112 1_4:-72647764 Msa0183690:CDS
CTTACTATGATGACCTCCAA+GGG 0.614845 1_4:+72648031 None:intergenic
AGAGAAGGAGGAGGATCAGG+AGG 0.615008 1_4:-72648140 Msa0183690:CDS
CAGGAGTCCATCTCAAACGA+GGG 0.615814 1_4:+72648087 None:intergenic
TGCTAAACCCATCAGGACCA+GGG 0.616115 1_4:+72644874 None:intergenic
ACTTACTATGATGACCTCCA+AGG 0.620124 1_4:+72648030 None:intergenic
TAAGAAGCATTACTTGTCTG+AGG 0.629009 1_4:+72644945 None:intergenic
GTACAGCAACTACCATCAGA+AGG 0.636504 1_4:-72648490 None:intergenic
CCATCAGGACCAGGGTTAGG+GGG 0.646226 1_4:+72644882 None:intergenic
CAATGCCAATGCCAATACCA+TGG 0.649873 1_4:-72646864 Msa0183690:CDS
TTTCTTGTTCCTACTCACTG+GGG 0.651664 1_4:-72644674 Msa0183690:three_prime_UTR
AGAGGTGAATTAGGAAGACA+AGG 0.660553 1_4:-72647746 Msa0183690:intron
TCAGGAGTCCATCTCAAACG+AGG 0.669853 1_4:+72648086 None:intergenic
AATGCCAATGCCAATACCAT+GGG 0.680737 1_4:-72646863 Msa0183690:CDS
GGTAGCAAAGTTGAATTGGG+TGG 0.692739 1_4:+72646764 None:intergenic
GAGGATCAGGAGGAGCAGTG+AGG 0.714959 1_4:-72648130 Msa0183690:CDS
TTCGGCCAGTGAAATCAGTG+AGG 0.751752 1_4:-72644922 Msa0183690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAGAAAATATTGTATAAA+AGG + chr1_4:72645807-72645826 None:intergenic 10.0%
!! ACATTAAAAAAAAAAGTTAT+TGG - chr1_4:72646049-72646068 Msa0183690:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr1_4:72647562-72647581 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr1_4:72647563-72647582 None:intergenic 10.0%
!! TTATATTTATACAAAGAAGA+GGG + chr1_4:72644836-72644855 None:intergenic 15.0%
!! TTTATATTTATACAAAGAAG+AGG + chr1_4:72644837-72644856 None:intergenic 15.0%
!!! ATATTGTATAAAAGGTATAA+TGG + chr1_4:72645799-72645818 None:intergenic 15.0%
!! AAAAAAAAGTTATTGGTATT+TGG - chr1_4:72646056-72646075 Msa0183690:intron 15.0%
!! CAAAAAATAAGTTAAAGTAA+TGG + chr1_4:72646106-72646125 None:intergenic 15.0%
!!! AATATTTAAACCTTTCATTT+TGG - chr1_4:72646846-72646865 Msa0183690:CDS 15.0%
!!! ATATTTAAACCTTTCATTTT+GGG - chr1_4:72646847-72646866 Msa0183690:CDS 15.0%
!! ATTCTATACAAACATTTAAT+CGG - chr1_4:72647226-72647245 Msa0183690:CDS 15.0%
!!! AAACAAAACATGATAAATTT+TGG + chr1_4:72647361-72647380 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr1_4:72647498-72647517 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr1_4:72647561-72647580 None:intergenic 15.0%
!!! CTCATTTTAAATATTTTTAC+TGG - chr1_4:72647934-72647953 Msa0183690:intron 15.0%
!!! TCTATTATTTTTTCTTCTCT+TGG - chr1_4:72645525-72645544 Msa0183690:intron 20.0%
!!! TTTTTTGAAATAAGTCCTTA+TGG - chr1_4:72646119-72646138 Msa0183690:intron 20.0%
!!! TCTTTATCTCTTACTTTTAT+TGG - chr1_4:72646515-72646534 Msa0183690:intron 20.0%
!! TTCTATACAAACATTTAATC+GGG - chr1_4:72647227-72647246 Msa0183690:CDS 20.0%
!! GTTGTATTGAAAATTGAAAT+GGG + chr1_4:72647464-72647483 None:intergenic 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + chr1_4:72647465-72647484 None:intergenic 20.0%
!! AAAGTCATATTCCAATAATT+AGG + chr1_4:72647696-72647715 None:intergenic 20.0%
!! TACAAAAAAAGTTGTTTACT+TGG + chr1_4:72647901-72647920 None:intergenic 20.0%
!!! TCTTAATTTGTTTTTCCAAG+AGG - chr1_4:72644924-72644943 Msa0183690:CDS 25.0%
!!! CTTAATTTGTTTTTCCAAGA+GGG - chr1_4:72644925-72644944 Msa0183690:CDS 25.0%
!!! TTACTTTGTATTTTTGACAG+AGG - chr1_4:72645196-72645215 Msa0183690:intron 25.0%
!! GATTTTCTTTATGCATAACA+AGG - chr1_4:72645582-72645601 Msa0183690:intron 25.0%
! ATAATCCAAATCAAACCATA+AGG + chr1_4:72646137-72646156 None:intergenic 25.0%
! AAGTAAGAGATAAAGAAAGT+TGG + chr1_4:72646511-72646530 None:intergenic 25.0%
!!! TTATCTCTTACTTTTATTGG+AGG - chr1_4:72646518-72646537 Msa0183690:intron 25.0%
!! TTTTATTGGAGGAATCTATT+TGG - chr1_4:72646529-72646548 Msa0183690:intron 25.0%
! AAGTTAGCAGTATTAGTAAA+AGG - chr1_4:72646591-72646610 Msa0183690:intron 25.0%
!!! TGGTAGCTGTTTTAATTTTT+AGG - chr1_4:72646651-72646670 Msa0183690:intron 25.0%
!!! TAGCTGTTTTAATTTTTAGG+TGG - chr1_4:72646654-72646673 Msa0183690:intron 25.0%
! GAAAGGTTTAAATATTGAAC+AGG + chr1_4:72646842-72646861 None:intergenic 25.0%
!! AGTATAGTCTTGAAATGAAA+AGG + chr1_4:72646931-72646950 None:intergenic 25.0%
!!! TTTTTTAGTTAACCATCTTC+TGG - chr1_4:72646978-72646997 Msa0183690:intron 25.0%
! TCTATACAAACATTTAATCG+GGG - chr1_4:72647228-72647247 Msa0183690:CDS 25.0%
! AAATAATCTAACCACTTCTT+AGG + chr1_4:72647254-72647273 None:intergenic 25.0%
!! AAGAAGTGGTTAGATTATTT+TGG - chr1_4:72647254-72647273 Msa0183690:CDS 25.0%
! CTAACCATTATACTCTATAT+AGG + chr1_4:72647292-72647311 None:intergenic 25.0%
! CTATATAGAGTATAATGGTT+AGG - chr1_4:72647290-72647309 Msa0183690:CDS 25.0%
!!! GACACTTTTTTTCAGAAAAT+GGG + chr1_4:72647428-72647447 None:intergenic 25.0%
!!! TGGAATATGACTTTTTCATT+TGG - chr1_4:72647702-72647721 Msa0183690:intron 25.0%
!!! ATGACTTTTTCATTTGGAAT+TGG - chr1_4:72647708-72647727 Msa0183690:intron 25.0%
! TGCTACTACTAAAAAATGAA+TGG + chr1_4:72647845-72647864 None:intergenic 25.0%
! AAAAAAGTTGTTTACTTGGA+TGG + chr1_4:72647897-72647916 None:intergenic 25.0%
! GACAAATTTATTTACATGTG+TGG - chr1_4:72648002-72648021 Msa0183690:intron 25.0%
!! TGTGTAACATCTTTTACTTT+AGG - chr1_4:72648386-72648405 Msa0183690:five_prime_UTR 25.0%
!! GTGTAACATCTTTTACTTTA+GGG - chr1_4:72648387-72648406 Msa0183690:five_prime_UTR 25.0%
! AACAAAGAGAATAAAGAAAG+AGG + chr1_4:72648428-72648447 None:intergenic 25.0%
!! TGAAAATTCCTTTAGGACAT+TGG + chr1_4:72644694-72644713 None:intergenic 30.0%
TAGAAAATGAGTAGTAGTTG+TGG - chr1_4:72644974-72644993 Msa0183690:CDS 30.0%
ATCAACTGAAGAACAAGTTT+AGG + chr1_4:72645227-72645246 None:intergenic 30.0%
! TAAACTTGTTCTTCAGTTGA+TGG - chr1_4:72645226-72645245 Msa0183690:intron 30.0%
!! TTCAGTTGATGGATATCAAA+GGG - chr1_4:72645237-72645256 Msa0183690:intron 30.0%
AATGAAAATGAACCTGAAGA+TGG + chr1_4:72645286-72645305 None:intergenic 30.0%
ACATCTGGTTATCATAAAGA+AGG + chr1_4:72645361-72645380 None:intergenic 30.0%
! AATCCACAAGGGAATTATTT+TGG + chr1_4:72645566-72645585 None:intergenic 30.0%
TGCATAAAGAAAATCCACAA+GGG + chr1_4:72645577-72645596 None:intergenic 30.0%
ATGCATAAAGAAAATCCACA+AGG + chr1_4:72645578-72645597 None:intergenic 30.0%
AGACTACAATGCTCATTTAT+TGG - chr1_4:72645612-72645631 Msa0183690:intron 30.0%
TCCTTGTAGATTTCTTCTAA+TGG - chr1_4:72645690-72645709 Msa0183690:intron 30.0%
ACCATTAGAAGAAATCTACA+AGG + chr1_4:72645694-72645713 None:intergenic 30.0%
TGTAGCAAACATAATAGTAG+TGG + chr1_4:72645741-72645760 None:intergenic 30.0%
! TCTAATGAATGTGTTTTCTC+AGG - chr1_4:72645821-72645840 Msa0183690:intron 30.0%
!! AAGACATTGGTTTCTATGTT+GGG + chr1_4:72645858-72645877 None:intergenic 30.0%
GAATCTGATTCTTCTTTCAT+TGG - chr1_4:72645947-72645966 Msa0183690:intron 30.0%
ACAGTAACAACTTCTCAAAA+AGG - chr1_4:72645972-72645991 Msa0183690:intron 30.0%
TAAGTCCTTATGGTTTGATT+TGG - chr1_4:72646129-72646148 Msa0183690:intron 30.0%
TTAGAGATTTGAAAGAAGTG+AGG + chr1_4:72646415-72646434 None:intergenic 30.0%
!!! CTGTTTTAATTTTTAGGTGG+TGG - chr1_4:72646657-72646676 Msa0183690:intron 30.0%
AATTTCTCTGTCAATGCTAT+AGG - chr1_4:72646703-72646722 Msa0183690:CDS 30.0%
!! TGAACAAAAGTGAAAGTGTT+AGG + chr1_4:72646801-72646820 None:intergenic 30.0%
ACGACCTATATAGAGTATAA+TGG - chr1_4:72647285-72647304 Msa0183690:CDS 30.0%
!!! GGACACTTTTTTTCAGAAAA+TGG + chr1_4:72647429-72647448 None:intergenic 30.0%
!! TGAAATGGGTCAGTTATTTT+GGG + chr1_4:72647450-72647469 None:intergenic 30.0%
! TTGAAATGGGTCAGTTATTT+TGG + chr1_4:72647451-72647470 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr1_4:72647554-72647573 None:intergenic 30.0%
AGTGAAATGTCAAATAAAGG+AGG + chr1_4:72647654-72647673 None:intergenic 30.0%
! TCCTTTATTTGACATTTCAC+TGG - chr1_4:72647653-72647672 Msa0183690:intron 30.0%
ACCAGTGAAATGTCAAATAA+AGG + chr1_4:72647657-72647676 None:intergenic 30.0%
TCATATTCCAATAATTAGGC+AGG + chr1_4:72647692-72647711 None:intergenic 30.0%
! GTCCTTTTGTGCAATTTATA+TGG - chr1_4:72647747-72647766 Msa0183690:CDS 30.0%
GACCATATAAATTGCACAAA+AGG + chr1_4:72647752-72647771 None:intergenic 30.0%
AGTAATAACACCACATTCAA+AGG + chr1_4:72647782-72647801 None:intergenic 30.0%
! TTTTAGTAGTAGCATGTACA+TGG - chr1_4:72647851-72647870 Msa0183690:intron 30.0%
ACTGGCAACAACAATTATTA+TGG - chr1_4:72647952-72647971 Msa0183690:intron 30.0%
GACAAAACACACTTAACAAA+TGG + chr1_4:72648028-72648047 None:intergenic 30.0%
GACAAGTAATGCTTCTTATT+CGG - chr1_4:72648198-72648217 Msa0183690:five_prime_UTR 30.0%
TATCATCTACTGTGAATGAA+AGG - chr1_4:72648308-72648327 Msa0183690:five_prime_UTR 30.0%
ATCAAATCAATTGCCACAAA+TGG + chr1_4:72648356-72648375 None:intergenic 30.0%
GTAATATCTGATCCTTCTGA+TGG + chr1_4:72644663-72644682 None:intergenic 35.0%
!! AGAGCTCTGAAAATTCCTTT+AGG + chr1_4:72644701-72644720 None:intergenic 35.0%
GAGAGAAAATGAAAAGACGA+AGG + chr1_4:72644734-72644753 None:intergenic 35.0%
!! ATAGTACTTTTTGCACCCTA+TGG + chr1_4:72644801-72644820 None:intergenic 35.0%
!! ATTTGTTTTTCCAAGAGGGT+TGG - chr1_4:72644929-72644948 Msa0183690:CDS 35.0%
AACAAATATTCCAACCCTCT+TGG + chr1_4:72644942-72644961 None:intergenic 35.0%
!! CTTCAGTTGATGGATATCAA+AGG - chr1_4:72645236-72645255 Msa0183690:intron 35.0%
GTTCCAAAATAATTCCCTTG+TGG - chr1_4:72645560-72645579 Msa0183690:intron 35.0%
GGCATCAACTAAATGCAAAA+GGG + chr1_4:72645638-72645657 None:intergenic 35.0%
TGGCATCAACTAAATGCAAA+AGG + chr1_4:72645639-72645658 None:intergenic 35.0%
!! TTAGTCTTCCTACACTGTTT+TGG + chr1_4:72645659-72645678 None:intergenic 35.0%
! ATGAATGTGTTTTCTCAGGT+AGG - chr1_4:72645825-72645844 Msa0183690:intron 35.0%
!! CAAGACATTGGTTTCTATGT+TGG + chr1_4:72645859-72645878 None:intergenic 35.0%
ATGTTGAGCATTCTTTGATG+AGG - chr1_4:72645921-72645940 Msa0183690:intron 35.0%
GCATAGTCATAAAAGCAGTA+CGG + chr1_4:72646254-72646273 None:intergenic 35.0%
GCAGAACAAGAAAGGAATAA+AGG - chr1_4:72646313-72646332 Msa0183690:intron 35.0%
!! ATGAACAACAGTTTTGTGCA+TGG - chr1_4:72646336-72646355 Msa0183690:intron 35.0%
TCTGGTAGCAAAGTTGAATT+GGG + chr1_4:72646380-72646399 None:intergenic 35.0%
ATCTGGTAGCAAAGTTGAAT+TGG + chr1_4:72646381-72646400 None:intergenic 35.0%
! TCAACTTTGCTACCAGATTT+TGG - chr1_4:72646383-72646402 Msa0183690:intron 35.0%
GCATTTCAACTTCTACACTA+TGG - chr1_4:72646631-72646650 Msa0183690:intron 35.0%
ATATAGCTGCTTAAGAACCT+AGG - chr1_4:72646726-72646745 Msa0183690:CDS 35.0%
ATGGCTATAGGTATAGTAGT+AGG - chr1_4:72646763-72646782 Msa0183690:CDS 35.0%
! TTTTCACAACAGTAGAAGCA+AGG + chr1_4:72647024-72647043 None:intergenic 35.0%
GTTTGTTCCATTATTCTCCA+CGG - chr1_4:72647116-72647135 Msa0183690:intron 35.0%
! TTTTCAAAAAACCAACTCCG+TGG + chr1_4:72647136-72647155 None:intergenic 35.0%
ACTCTATATAGGTCGTACAA+GGG + chr1_4:72647281-72647300 None:intergenic 35.0%
TACTCTATATAGGTCGTACA+AGG + chr1_4:72647282-72647301 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG + chr1_4:72647415-72647434 None:intergenic 35.0%
AATCTGTGTGAAATGAGTCA+AGG - chr1_4:72647582-72647601 Msa0183690:intron 35.0%
ATCTGTGTGAAATGAGTCAA+GGG - chr1_4:72647583-72647602 Msa0183690:intron 35.0%
AGTCAAGGGGTCAAATAAAT+TGG - chr1_4:72647597-72647616 Msa0183690:intron 35.0%
GTCAAGGGGTCAAATAAATT+GGG - chr1_4:72647598-72647617 Msa0183690:intron 35.0%
GTCAATTCTTCCTTTGAATG+TGG - chr1_4:72647769-72647788 Msa0183690:intron 35.0%
! TACATTACTAGCCTGTACAA+GGG + chr1_4:72648050-72648069 None:intergenic 35.0%
! TTACATTACTAGCCTGTACA+AGG + chr1_4:72648051-72648070 None:intergenic 35.0%
CTCCATTAATTGACCATGAA+GGG + chr1_4:72648087-72648106 None:intergenic 35.0%
ACTCCATTAATTGACCATGA+AGG + chr1_4:72648088-72648107 None:intergenic 35.0%
!! TAAGAAGCATTACTTGTCTG+AGG + chr1_4:72648196-72648215 None:intergenic 35.0%
! TTTTCTTGTTCCTACTCACT+GGG - chr1_4:72648463-72648482 Msa0183690:five_prime_UTR 35.0%
GAGAGAGGGGAATAAGTATA+AGG + chr1_4:72644756-72644775 None:intergenic 40.0%
TATGGAAAACAGAATCCAGC+TGG + chr1_4:72644783-72644802 None:intergenic 40.0%
! AGCTGGATTCTGTTTTCCAT+AGG - chr1_4:72644782-72644801 Msa0183690:exon 40.0%
! GCTGGATTCTGTTTTCCATA+GGG - chr1_4:72644783-72644802 Msa0183690:exon 40.0%
AGTAGTAGTTGTGGAAGAGA+AGG - chr1_4:72644983-72645002 Msa0183690:CDS 40.0%
ACAAAGCAACGATGAAGTTC+AGG + chr1_4:72645073-72645092 None:intergenic 40.0%
GTTCATGCTATTCAAACCCT+TGG - chr1_4:72645091-72645110 Msa0183690:intron 40.0%
CTTACTATGATGACCTCCAA+GGG + chr1_4:72645110-72645129 None:intergenic 40.0%
ACTTACTATGATGACCTCCA+AGG + chr1_4:72645111-72645130 None:intergenic 40.0%
CTCTCATGCTTCTATACATC+TGG + chr1_4:72645376-72645395 None:intergenic 40.0%
! CAGATGTATAGAAGCATGAG+AGG - chr1_4:72645374-72645393 Msa0183690:intron 40.0%
! AGAAGCATGAGAGGTGAATT+AGG - chr1_4:72645383-72645402 Msa0183690:intron 40.0%
AGAGGTGAATTAGGAAGACA+AGG - chr1_4:72645392-72645411 Msa0183690:intron 40.0%
! AGTTGATGCCAAAACAGTGT+AGG - chr1_4:72645648-72645667 Msa0183690:intron 40.0%
CATCATGCTCTTCAAGACAT+TGG + chr1_4:72645871-72645890 None:intergenic 40.0%
! TGTCTTGAAGAGCATGATGA+TGG - chr1_4:72645872-72645891 Msa0183690:intron 40.0%
AATGCCAATGCCAATACCAT+GGG - chr1_4:72646275-72646294 Msa0183690:intron 40.0%
GTGAGGTTTATGCCAAAATC+TGG + chr1_4:72646398-72646417 None:intergenic 40.0%
CCTGAGAGAAATCAGATTCT+TGG + chr1_4:72646439-72646458 None:intergenic 40.0%
CCAAGAATCTGATTTCTCTC+AGG - chr1_4:72646436-72646455 Msa0183690:intron 40.0%
!!! AATTTTTAGGTGGTGGAGTG+TGG - chr1_4:72646664-72646683 Msa0183690:intron 40.0%
!!! TGGAGTGTGGTATTGGTTTT+GGG - chr1_4:72646677-72646696 Msa0183690:intron 40.0%
AACGTGGATCCCAAAATGAA+AGG + chr1_4:72646859-72646878 None:intergenic 40.0%
GAAAAGAGAATGCATTGCAC+GGG + chr1_4:72646909-72646928 None:intergenic 40.0%
GGAAAAGAGAATGCATTGCA+CGG + chr1_4:72646910-72646929 None:intergenic 40.0%
AGTCTTGACTTACCAGAAGA+TGG + chr1_4:72646993-72647012 None:intergenic 40.0%
TTCTGGTAAGTCAAGACTGT+GGG - chr1_4:72646995-72647014 Msa0183690:intron 40.0%
TTCATTCAGCGTTTCAAACG+TGG + chr1_4:72647159-72647178 None:intergenic 40.0%
GAAAATGGGTCAGTTATTCC+GGG + chr1_4:72647414-72647433 None:intergenic 40.0%
TCTGTGTGAAATGAGTCAAG+GGG - chr1_4:72647584-72647603 Msa0183690:intron 40.0%
AGGGGTCAAATAAATTGGGA+CGG - chr1_4:72647602-72647621 Msa0183690:intron 40.0%
GTCAAATAAATTGGGACGGA+GGG - chr1_4:72647606-72647625 Msa0183690:intron 40.0%
AGCCCTTCATGGTCAATTAA+TGG - chr1_4:72648082-72648101 Msa0183690:CDS 40.0%
AGAGCACATGTAGAAGTTGA+AGG - chr1_4:72648121-72648140 Msa0183690:CDS 40.0%
CATGTAGAAGTTGAAGGAGT+AGG - chr1_4:72648127-72648146 Msa0183690:CDS 40.0%
!! AATTGCCTCACTGATTTCAC+TGG + chr1_4:72648224-72648243 None:intergenic 40.0%
GACCTATCTTTAGCCATTTG+TGG - chr1_4:72648340-72648359 Msa0183690:five_prime_UTR 40.0%
TGCCACAAATGGCTAAAGAT+AGG + chr1_4:72648345-72648364 None:intergenic 40.0%
! CTTTTCTTGTTCCTACTCAC+TGG - chr1_4:72648462-72648481 Msa0183690:five_prime_UTR 40.0%
TTTCTTGTTCCTACTCACTG+GGG - chr1_4:72648464-72648483 Msa0183690:five_prime_UTR 40.0%
!! CTTTAGGACATTGGTGTCAC+TGG + chr1_4:72644685-72644704 None:intergenic 45.0%
CAGTGACACCAATGTCCTAA+AGG - chr1_4:72644683-72644702 Msa0183690:three_prime_UTR 45.0%
AGTAGTTGTGGAAGAGAAGG+AGG - chr1_4:72644986-72645005 Msa0183690:CDS 45.0%
CAAAAGTCCCTCGTTTGAGA+TGG - chr1_4:72645044-72645063 Msa0183690:CDS 45.0%
CATGCTATTCAAACCCTTGG+AGG - chr1_4:72645094-72645113 Msa0183690:intron 45.0%
!! CATGGTATTGGCATTGGCAT+TGG + chr1_4:72646276-72646295 None:intergenic 45.0%
CAATGCCAATGCCAATACCA+TGG - chr1_4:72646274-72646293 Msa0183690:intron 45.0%
!! ATCACCCATGGTATTGGCAT+TGG + chr1_4:72646282-72646301 None:intergenic 45.0%
!! AACAGTTTTGTGCATGGCAG+AGG - chr1_4:72646342-72646361 Msa0183690:intron 45.0%
GGTAGCAAAGTTGAATTGGG+TGG + chr1_4:72646377-72646396 None:intergenic 45.0%
!!! GTGGAGTGTGGTATTGGTTT+TGG - chr1_4:72646676-72646695 Msa0183690:intron 45.0%
CTGCTTAAGAACCTAGGCTA+TGG - chr1_4:72646732-72646751 Msa0183690:CDS 45.0%
AAGAACCTAGGCTATGGCTA+TGG - chr1_4:72646738-72646757 Msa0183690:CDS 45.0%
ATGGCTATGGCTATGGCTAT+AGG - chr1_4:72646751-72646770 Msa0183690:CDS 45.0%
!! CCAACGGTTTGGTATTAACG+TGG + chr1_4:72646875-72646894 None:intergenic 45.0%
CCACGTTAATACCAAACCGT+TGG - chr1_4:72646872-72646891 Msa0183690:CDS 45.0%
CATCTGAGAAACCAACGGTT+TGG + chr1_4:72646886-72646905 None:intergenic 45.0%
CTTCTGGTAAGTCAAGACTG+TGG - chr1_4:72646994-72647013 Msa0183690:intron 45.0%
TCTGGTAAGTCAAGACTGTG+GGG - chr1_4:72646996-72647015 Msa0183690:intron 45.0%
TCCATTATTCTCCACGGAGT+TGG - chr1_4:72647122-72647141 Msa0183690:intron 45.0%
ACCAACTCCGTGGAGAATAA+TGG + chr1_4:72647126-72647145 None:intergenic 45.0%
TTTAATCGGGGCCTAAGAAG+TGG - chr1_4:72647240-72647259 Msa0183690:CDS 45.0%
GGTCAAATAAATTGGGACGG+AGG - chr1_4:72647605-72647624 Msa0183690:intron 45.0%
TCCTGCTCCTGCCTAATTAT+TGG - chr1_4:72647682-72647701 Msa0183690:intron 45.0%
TCCAATAATTAGGCAGGAGC+AGG + chr1_4:72647686-72647705 None:intergenic 45.0%
! GTGTGTTTTGTCCCTTGTAC+AGG - chr1_4:72648036-72648055 Msa0183690:CDS 45.0%
ATGACAGAAAGAGCCCTTCA+TGG - chr1_4:72648071-72648090 Msa0183690:CDS 45.0%
GTAGAAGTTGAAGGAGTAGG+AGG - chr1_4:72648130-72648149 Msa0183690:CDS 45.0%
! GCATTACTTGTCTGAGGTGA+AGG + chr1_4:72648190-72648209 None:intergenic 45.0%
TTGTAGCTGCTAAACCCATC+AGG + chr1_4:72648274-72648293 None:intergenic 45.0%
!! TGATGGGTTTAGCAGCTACA+AGG - chr1_4:72648273-72648292 Msa0183690:five_prime_UTR 45.0%
TTCTTGTTCCTACTCACTGG+GGG - chr1_4:72648465-72648484 Msa0183690:five_prime_UTR 45.0%
ATCCAGCTGGAAGAGAGAGA+GGG + chr1_4:72644770-72644789 None:intergenic 50.0%
AATCCAGCTGGAAGAGAGAG+AGG + chr1_4:72644771-72644790 None:intergenic 50.0%
AGTTGTGGAAGAGAAGGAGG+AGG - chr1_4:72644989-72645008 Msa0183690:CDS 50.0%
CAGGAGTCCATCTCAAACGA+GGG + chr1_4:72645054-72645073 None:intergenic 50.0%
TCAGGAGTCCATCTCAAACG+AGG + chr1_4:72645055-72645074 None:intergenic 50.0%
ACACGTCAAGAGCCATCTTC+AGG - chr1_4:72645271-72645290 Msa0183690:intron 50.0%
CTGCAGATCACCCATGGTAT+TGG + chr1_4:72646288-72646307 None:intergenic 50.0%
CAGCAGCTGCAGAACAAGAA+AGG - chr1_4:72646305-72646324 Msa0183690:intron 50.0%
!! TAGGTGGTGGAGTGTGGTAT+TGG - chr1_4:72646670-72646689 Msa0183690:intron 50.0%
CATAGCCATAGCCATAGCCT+AGG + chr1_4:72646746-72646765 None:intergenic 50.0%
CTAGGCTATGGCTATGGCTA+TGG - chr1_4:72646744-72646763 Msa0183690:CDS 50.0%
ACGGGCATCTGAGAAACCAA+CGG + chr1_4:72646891-72646910 None:intergenic 50.0%
ATGGGTCAGTTATTCCGGGA+CGG + chr1_4:72647410-72647429 None:intergenic 50.0%
TTCGGCCAGTGAAATCAGTG+AGG - chr1_4:72648216-72648235 Msa0183690:five_prime_UTR 50.0%
TGCTAAACCCATCAGGACCA+GGG + chr1_4:72648267-72648286 None:intergenic 50.0%
TCCAGCTGGAAGAGAGAGAG+GGG + chr1_4:72644769-72644788 None:intergenic 55.0%
GGAAGAGAAGGAGGAGGATC+AGG - chr1_4:72644995-72645014 Msa0183690:CDS 55.0%
AGAGAAGGAGGAGGATCAGG+AGG - chr1_4:72644998-72645017 Msa0183690:CDS 55.0%
CTAACTTACTCCCTCCGTCC+CGG - chr1_4:72647393-72647412 Msa0183690:intron 55.0%
GTCAGTTATTCCGGGACGGA+GGG + chr1_4:72647406-72647425 None:intergenic 55.0%
AATTAGGCAGGAGCAGGAGC+AGG + chr1_4:72647680-72647699 None:intergenic 55.0%
ACCCATCAGGACCAGGGTTA+GGG + chr1_4:72648261-72648280 None:intergenic 55.0%
AACCCATCAGGACCAGGGTT+AGG + chr1_4:72648262-72648281 None:intergenic 55.0%
CTGCTAAACCCATCAGGACC+AGG + chr1_4:72648268-72648287 None:intergenic 55.0%
TCCCCTCTCTCTCTTCCAGC+TGG - chr1_4:72644765-72644784 Msa0183690:three_prime_UTR 60.0%
GAGGATCAGGAGGAGCAGTG+AGG - chr1_4:72645008-72645027 Msa0183690:CDS 60.0%
CAGCTGCTGCAGATCACCCA+TGG + chr1_4:72646294-72646313 None:intergenic 60.0%
GGTCAGTTATTCCGGGACGG+AGG + chr1_4:72647407-72647426 None:intergenic 60.0%
CCATCAGGACCAGGGTTAGG+GGG + chr1_4:72648259-72648278 None:intergenic 60.0%
CCCATCAGGACCAGGGTTAG+GGG + chr1_4:72648260-72648279 None:intergenic 60.0%
CCCCTAACCCTGGTCCTGAT+GGG - chr1_4:72648257-72648276 Msa0183690:five_prime_UTR 60.0%
TGCATGCACCCCCAGTGAGT+AGG + chr1_4:72648476-72648495 None:intergenic 60.0%
TGCTGTCCTCCCCCTAACCC+TGG - chr1_4:72648247-72648266 Msa0183690:five_prime_UTR 65.0%
TCAGGACCAGGGTTAGGGGG+AGG + chr1_4:72648256-72648275 None:intergenic 65.0%
CCCCCTAACCCTGGTCCTGA+TGG - chr1_4:72648256-72648275 Msa0183690:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 72644657 72648503 72644657 ID=Msa0183690;Name=Msa0183690
chr1_4 mRNA 72644657 72648503 72644657 ID=Msa0183690-mRNA-1;Parent=Msa0183690;Name=Msa0183690-mRNA-1;_AED=0.06;_eAED=0.06;_QI=323|1|1|1|1|1|6|134|337
chr1_4 exon 72644657 72645102 72644657 ID=Msa0183690-mRNA-1:exon:24612;Parent=Msa0183690-mRNA-1
chr1_4 exon 72646703 72646994 72646703 ID=Msa0183690-mRNA-1:exon:24611;Parent=Msa0183690-mRNA-1
chr1_4 exon 72647167 72647317 72647167 ID=Msa0183690-mRNA-1:exon:24610;Parent=Msa0183690-mRNA-1
chr1_4 exon 72647747 72647783 72647747 ID=Msa0183690-mRNA-1:exon:24609;Parent=Msa0183690-mRNA-1
chr1_4 exon 72647868 72647944 72647868 ID=Msa0183690-mRNA-1:exon:24608;Parent=Msa0183690-mRNA-1
chr1_4 exon 72648036 72648503 72648036 ID=Msa0183690-mRNA-1:exon:24607;Parent=Msa0183690-mRNA-1
chr1_4 five_prime_UTR 72648181 72648503 72648181 ID=Msa0183690-mRNA-1:five_prime_utr;Parent=Msa0183690-mRNA-1
chr1_4 CDS 72648036 72648180 72648036 ID=Msa0183690-mRNA-1:cds;Parent=Msa0183690-mRNA-1
chr1_4 CDS 72647868 72647944 72647868 ID=Msa0183690-mRNA-1:cds;Parent=Msa0183690-mRNA-1
chr1_4 CDS 72647747 72647783 72647747 ID=Msa0183690-mRNA-1:cds;Parent=Msa0183690-mRNA-1
chr1_4 CDS 72647167 72647317 72647167 ID=Msa0183690-mRNA-1:cds;Parent=Msa0183690-mRNA-1
chr1_4 CDS 72646703 72646994 72646703 ID=Msa0183690-mRNA-1:cds;Parent=Msa0183690-mRNA-1
chr1_4 CDS 72644791 72645102 72644791 ID=Msa0183690-mRNA-1:cds;Parent=Msa0183690-mRNA-1
chr1_4 three_prime_UTR 72644657 72644790 72644657 ID=Msa0183690-mRNA-1:three_prime_utr;Parent=Msa0183690-mRNA-1
Gene Sequence

>Msa0183690

ATGAGTAGTAGTTGTGGAAGAGAAGGAGGAGGATCAGGAGGAGCAGTGAGGCAGTATATAAGATCAAAAGTCCCTCGTTTGAGATGGACTCCTGAACTTCATCGTTGCTTTGTTCATGCTATTCAAACCCTTGGAGGTCATCATAAGGCTACTCCTAAACTTGTTCTTCAGTTGATGGATATCAAAGGGCTCACTATTTCACACGTCAAGAGCCATCTTCAGATGTATAGAAGCATGAGAGGTGAATTAGGAAGACAAGGTAGGACAAGCTCCCAACATAGAAACCAATGTCTTGAAGAGCATGATGATGGATGTGTTGATGAAGTGAATGATGTTAATGTTGAGCATTCTTTGATGAGGAGAGAATCTGATTCTTCTTTCATTGGTCACAGTAACAACTTCTCAAAAAGAGCTAGAATCGAGAGAAGAAGTTCTACAACTAGTCTGCAATGCAGCAGTGAAAGAAGAAGAATATGTGATGATGCAGTAACAAAACCGTACTGCTTTTATGACTATGCCAATGCCAATGCCAATACCATGGGTGATCTGCAGCAGCTGCAGAACAAGAAAGGAATAAAGGATGAACAACAGTTTTGTGCATGGCAGAGGCAAATTCAACCACCCAATTCAACTTTGCTACCAGATTTTGGCATAAACCTCACTTCTTTCAAATCTCTAAACCAAGAATCTGATTTCTCTCAGGCTAGTAATGTAAATGACAGAAAGAGCCCTTCATGGTCAATTAATGGAGTTGTGAAAACTGACAGAGCACATGTAGAAGTTGAAGGAGTAGGAGGACATGAGTTGTCATTGTCGTTAACATTGCAAAATCCTTCACCTCAGACAAGTAATGCTTCTTATTCGGCCAGTGAAATCAGTGAGGCAATTTCATGCTGTCCTCCCCCTAACCCTGGTCCTGATGGGTTTAGCAGCTACAAGGACTGCTCTAGAATATCATCTACTGTGAATGAAAGGATTAATTTAGACCTATCTTTAGCCATTTGTGGCAATTGA
Protein sequence

>Msa0183690

MSSSCGREGGGSGGAVRQYIRSKVPRLRWTPELHRCFVHAIQTLGGHHKATPKLVLQLMDIKGLTISHVKSHLQMYRSMRGELGRQGRTSSQHRNQCLEEHDDGCVDEVNDVNVEHSLMRRESDSSFIGHSNNFSKRARIERRSSTTSLQCSSERRRICDDAVTKPYCFYDYANANANTMGDLQQLQNKKGIKDEQQFCAWQRQIQPPNSTLLPDFGINLTSFKSLNQESDFSQASNVNDRKSPSWSINGVVKTDRAHVEVEGVGGHELSLSLTLQNPSPQTSNASYSASEISEAISCCPPPNPGPDGFSSYKDCSRISSTVNERINLDLSLAICGN*