Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Gene ID | Type | Classification |
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Gene ID | Type | Classification |
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Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0090950 | Msa0943190 | 0.807838 | 4.156322e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
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Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Find 8 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATATTGATCTTGAAGGATTT+TGG | 0.241356 | 1_2:+73085544 | Msa0090950:CDS |
GAGCTTGCTAAACCTGAATT+AGG | 0.258702 | 1_2:+73084414 | Msa0090950:CDS |
GCTACAATATGATTTGGTTT+TGG | 0.292771 | 1_2:+73085505 | Msa0090950:CDS |
ATTCCAGCTACAATATGATT+TGG | 0.322208 | 1_2:+73085499 | Msa0090950:CDS |
GTGTTCTCAAAACCTAATTC+AGG | 0.330796 | 1_2:-73084426 | None:intergenic |
AAACCAAATCATATTGTAGC+TGG | 0.444443 | 1_2:-73085502 | None:intergenic |
GGTAGGCATATTGATCTTGA+AGG | 0.492825 | 1_2:+73085537 | Msa0090950:CDS |
TCAGAGAAAGACTGATGGAA+TGG | 0.562153 | 1_2:+73082893 | Msa0090950:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTGATTTTTTGTATTCAAT+TGG | - | chr1_2:73083273-73083292 | None:intergenic | 15.0% |
!!! | ATTTGTTTAATTTGGTTTTT+TGG | + | chr1_2:73083733-73083752 | Msa0090950:intron | 15.0% |
!! | AGTTCATTGTAATTAAATAA+TGG | + | chr1_2:73084930-73084949 | Msa0090950:intron | 15.0% |
!! | TTGAAATTCAAATTTGTAAG+AGG | + | chr1_2:73083041-73083060 | Msa0090950:intron | 20.0% |
!! | TGAAATTCAAATTTGTAAGA+GGG | + | chr1_2:73083042-73083061 | Msa0090950:intron | 20.0% |
!! | AATCTTTATATCTAATCCAA+AGG | - | chr1_2:73083108-73083127 | None:intergenic | 20.0% |
!! | ATTCAAACTAAAAGACAATT+GGG | - | chr1_2:73083136-73083155 | None:intergenic | 20.0% |
!!! | TAGTTTTCCATAGATTTTTT+AGG | + | chr1_2:73083679-73083698 | Msa0090950:intron | 20.0% |
!! | GTAAGATCATTTGTTTAATT+TGG | + | chr1_2:73083725-73083744 | Msa0090950:intron | 20.0% |
!! | ACTACAAATTCAATAGAAAA+TGG | - | chr1_2:73084482-73084501 | None:intergenic | 20.0% |
!! | AGTAACATAAATTAAGTGTT+TGG | + | chr1_2:73084743-73084762 | Msa0090950:intron | 20.0% |
!!! | ATAATAAGAGTGTAAAGTAA+AGG | - | chr1_2:73084824-73084843 | None:intergenic | 20.0% |
!!! | AGTACTCAATTTTTTTTTGT+TGG | + | chr1_2:73084969-73084988 | Msa0090950:intron | 20.0% |
! | ATGGAATGGTAAATAAAAGA+TGG | + | chr1_2:73082907-73082926 | Msa0090950:intron | 25.0% |
!!! | CTTCAACTTATTTTTTGCAT+CGG | - | chr1_2:73083016-73083035 | None:intergenic | 25.0% |
!! | GATGCAAAAAATAAGTTGAA+GGG | + | chr1_2:73083015-73083034 | Msa0090950:intron | 25.0% |
! | GATTCAAACTAAAAGACAAT+TGG | - | chr1_2:73083137-73083156 | None:intergenic | 25.0% |
! | TGATTGAGAATAGAAATCAA+AGG | + | chr1_2:73083560-73083579 | Msa0090950:intron | 25.0% |
! | GATTGAGAATAGAAATCAAA+GGG | + | chr1_2:73083561-73083580 | Msa0090950:intron | 25.0% |
! | TGAACAACAAATGAATTGAA+AGG | - | chr1_2:73083656-73083675 | None:intergenic | 25.0% |
! | AAAGAAGCCTAAAAAATCTA+TGG | - | chr1_2:73083689-73083708 | None:intergenic | 25.0% |
! | TTCTTTCAAAATCAAGGTAA+TGG | + | chr1_2:73083703-73083722 | Msa0090950:intron | 25.0% |
!!! | TTTTGGTTATTTGTAATCTG+AGG | + | chr1_2:73083750-73083769 | Msa0090950:intron | 25.0% |
!! | TTTTCCATTAGTGTTCTATA+AGG | + | chr1_2:73083821-73083840 | Msa0090950:intron | 25.0% |
! | TTTCCATTAGTGTTCTATAA+GGG | + | chr1_2:73083822-73083841 | Msa0090950:intron | 25.0% |
! | TACAGTTTAATGCATATGAT+TGG | + | chr1_2:73083975-73083994 | Msa0090950:intron | 25.0% |
!!! | TTTGTTTTCCTCTTCTTTTT+GGG | + | chr1_2:73084002-73084021 | Msa0090950:intron | 25.0% |
! | TTACAAAAAAAGAAGAAGCT+AGG | - | chr1_2:73084324-73084343 | None:intergenic | 25.0% |
!!! | GCTTCTTCTTTTTTTGTAAA+AGG | + | chr1_2:73084325-73084344 | Msa0090950:intron | 25.0% |
! | TAAAAGGATATCTCATGAAT+TGG | + | chr1_2:73084341-73084360 | Msa0090950:intron | 25.0% |
!! | CTATTGAATTTGTAGTCTTA+TGG | + | chr1_2:73084486-73084505 | Msa0090950:intron | 25.0% |
! | AACTTCATTTGATAAACACA+TGG | + | chr1_2:73084571-73084590 | Msa0090950:intron | 25.0% |
! | CATAAAATAAAGCTCATGTA+AGG | - | chr1_2:73084852-73084871 | None:intergenic | 25.0% |
! | ATCTATACAATTAGGTTTCA+TGG | - | chr1_2:73084881-73084900 | None:intergenic | 25.0% |
! | ATGAAACCTAATTGTATAGA+TGG | + | chr1_2:73084880-73084899 | Msa0090950:intron | 25.0% |
!!! | TAAAGGTGTTTTGTATTGTT+AGG | + | chr1_2:73085114-73085133 | Msa0090950:intron | 25.0% |
!!! | AAAGGTGTTTTGTATTGTTA+GGG | + | chr1_2:73085115-73085134 | Msa0090950:intron | 25.0% |
!!! | GCTTTAGAAACAATTCTATT+AGG | + | chr1_2:73085140-73085159 | Msa0090950:intron | 25.0% |
! | ATCGTGTGATTTGAAAATTA+AGG | + | chr1_2:73085172-73085191 | Msa0090950:intron | 25.0% |
! | ATAGAATCTTCAAGAAATCA+TGG | - | chr1_2:73085324-73085343 | None:intergenic | 25.0% |
!!! | ATTTGTTTTGACTTTTGATG+TGG | + | chr1_2:73085355-73085374 | Msa0090950:intron | 25.0% |
! | AAACAACATCACAAATTAGA+CGG | - | chr1_2:73085402-73085421 | None:intergenic | 25.0% |
! | TTCTGCATCAAAATAAAGTA+AGG | - | chr1_2:73085459-73085478 | None:intergenic | 25.0% |
!!! | TGATTTGGTTTTGGAATAAT+AGG | + | chr1_2:73085514-73085533 | Msa0090950:CDS | 25.0% |
!!! | GATTTGGTTTTGGAATAATA+GGG | + | chr1_2:73085515-73085534 | Msa0090950:CDS | 25.0% |
!!! | ATTTGGTTTTGGAATAATAG+GGG | + | chr1_2:73085516-73085535 | Msa0090950:CDS | 25.0% |
!! | ATATTGATCTTGAAGGATTT+TGG | + | chr1_2:73085544-73085563 | Msa0090950:CDS | 25.0% |
AAAAATCAGAGAAAGACTGA+TGG | + | chr1_2:73082888-73082907 | Msa0090950:CDS | 30.0% | |
AGAGAAAAATTCTGCTTTGT+TGG | + | chr1_2:73082945-73082964 | Msa0090950:intron | 30.0% | |
! | CGATGCAAAAAATAAGTTGA+AGG | + | chr1_2:73083014-73083033 | Msa0090950:intron | 30.0% |
AATTCAAATTTGTAAGAGGG+AGG | + | chr1_2:73083045-73083064 | Msa0090950:intron | 30.0% | |
ATTCAAATTTGTAAGAGGGA+GGG | + | chr1_2:73083046-73083065 | Msa0090950:intron | 30.0% | |
TAACCCTAACCCTAAAAATT+TGG | - | chr1_2:73083074-73083093 | None:intergenic | 30.0% | |
AAACTAAAAGACAATTGGGA+GGG | - | chr1_2:73083132-73083151 | None:intergenic | 30.0% | |
ACTCATTGAAGAAGATACTT+GGG | - | chr1_2:73083297-73083316 | None:intergenic | 30.0% | |
AACTCATTGAAGAAGATACT+TGG | - | chr1_2:73083298-73083317 | None:intergenic | 30.0% | |
!! | TTTTTACCTTGCTTCTGAAA+TGG | - | chr1_2:73083328-73083347 | None:intergenic | 30.0% |
!! | AAATTTTTCGAACGTTGAGT+CGG | + | chr1_2:73083487-73083506 | Msa0090950:intron | 30.0% |
TTAGGCTTCTTTCAAAATCA+AGG | + | chr1_2:73083697-73083716 | Msa0090950:intron | 30.0% | |
TAATGGAAAAATACATGCGT+GGG | - | chr1_2:73083811-73083830 | None:intergenic | 30.0% | |
CAAACAGAATATGAAACTGA+AGG | - | chr1_2:73083873-73083892 | None:intergenic | 30.0% | |
CTTCAGTTTCATATTCTGTT+TGG | + | chr1_2:73083871-73083890 | Msa0090950:intron | 30.0% | |
TTATACTAACCTGATTTCTC+TGG | + | chr1_2:73083902-73083921 | Msa0090950:intron | 30.0% | |
GTTTAATGCATATGATTGGT+AGG | + | chr1_2:73083979-73083998 | Msa0090950:intron | 30.0% | |
!! | GTTTGTTTTCCTCTTCTTTT+TGG | + | chr1_2:73084001-73084020 | Msa0090950:intron | 30.0% |
!!! | GACTTTTTTGTCGTTTGTTT+TGG | + | chr1_2:73084061-73084080 | Msa0090950:intron | 30.0% |
CAATGGAGGAAATTAATTTC+AGG | - | chr1_2:73084534-73084553 | None:intergenic | 30.0% | |
ATCACATACACATCAAACAA+TGG | - | chr1_2:73084551-73084570 | None:intergenic | 30.0% | |
CATTCATTCTCAAGATATGT+TGG | + | chr1_2:73084649-73084668 | Msa0090950:intron | 30.0% | |
CAAATGGTAAGTGTTTCTTA+TGG | + | chr1_2:73084687-73084706 | Msa0090950:intron | 30.0% | |
GTTTCAGATCTGATAAGAAA+TGG | + | chr1_2:73084719-73084738 | Msa0090950:intron | 30.0% | |
GTAAAGGAATCATTGAAGTT+AGG | - | chr1_2:73084808-73084827 | None:intergenic | 30.0% | |
AACATGCCATCTATACAATT+AGG | - | chr1_2:73084889-73084908 | None:intergenic | 30.0% | |
!! | ACAAACAAACGTTTAAGTTG+AGG | - | chr1_2:73085030-73085049 | None:intergenic | 30.0% |
TCAACTTAAACGTTTGTTTG+TGG | + | chr1_2:73085029-73085048 | Msa0090950:intron | 30.0% | |
!!! | GGAAATGGAATCTTATTTTG+TGG | - | chr1_2:73085079-73085098 | None:intergenic | 30.0% |
TGGAAAGTAAAGAAAATGCT+AGG | - | chr1_2:73085205-73085224 | None:intergenic | 30.0% | |
CATGGAGGAAATAGTAAAAA+TGG | - | chr1_2:73085306-73085325 | None:intergenic | 30.0% | |
!!! | TTTTGACTTTTGATGTGGTT+TGG | + | chr1_2:73085360-73085379 | Msa0090950:intron | 30.0% |
AAATAAAGTAAGGTAAGCCA+TGG | - | chr1_2:73085449-73085468 | None:intergenic | 30.0% | |
ATTCCAGCTACAATATGATT+TGG | + | chr1_2:73085499-73085518 | Msa0090950:CDS | 30.0% | |
AAACCAAATCATATTGTAGC+TGG | - | chr1_2:73085505-73085524 | None:intergenic | 30.0% | |
!!! | GCTACAATATGATTTGGTTT+TGG | + | chr1_2:73085505-73085524 | Msa0090950:CDS | 30.0% |
AAAATGAAGAGAAAGCAACG+TGG | + | chr1_2:73082968-73082987 | Msa0090950:intron | 35.0% | |
AAATGAAGAGAAAGCAACGT+GGG | + | chr1_2:73082969-73082988 | Msa0090950:intron | 35.0% | |
CAAACTAAAAGACAATTGGG+AGG | - | chr1_2:73083133-73083152 | None:intergenic | 35.0% | |
TGCAGTGATGCCTAAAAATT+TGG | + | chr1_2:73083171-73083190 | Msa0090950:intron | 35.0% | |
GCAGTGATGCCTAAAAATTT+GGG | + | chr1_2:73083172-73083191 | Msa0090950:intron | 35.0% | |
ATAACTCCATTTCAGAAGCA+AGG | + | chr1_2:73083319-73083338 | Msa0090950:intron | 35.0% | |
! | AACCTTTTGTCACAAAGAAG+AGG | - | chr1_2:73083600-73083619 | None:intergenic | 35.0% |
CTAATGGAAAAATACATGCG+TGG | - | chr1_2:73083812-73083831 | None:intergenic | 35.0% | |
CAAACAAAACCAGAGAAATC+AGG | - | chr1_2:73083914-73083933 | None:intergenic | 35.0% | |
!!! | CTGATTTCTCTGGTTTTGTT+TGG | + | chr1_2:73083912-73083931 | Msa0090950:intron | 35.0% |
TAAGAACTCCCAAAAAGAAG+AGG | - | chr1_2:73084013-73084032 | None:intergenic | 35.0% | |
!! | CTTCTTTTTGGGAGTTCTTA+AGG | + | chr1_2:73084013-73084032 | Msa0090950:intron | 35.0% |
TTATGATCATGAGACGTTTG+AGG | + | chr1_2:73084111-73084130 | Msa0090950:intron | 35.0% | |
GTCTCAATCTGAAAAACTGA+TGG | + | chr1_2:73084138-73084157 | Msa0090950:intron | 35.0% | |
GTTTCTCTCTATCACTTTGT+AGG | + | chr1_2:73084377-73084396 | Msa0090950:intron | 35.0% | |
GTGTTCTCAAAACCTAATTC+AGG | - | chr1_2:73084429-73084448 | None:intergenic | 35.0% | |
!! | TTTTGAGAACACACATGTAG+AGG | + | chr1_2:73084437-73084456 | Msa0090950:CDS | 35.0% |
ACATACACATCAAACAATGG+AGG | - | chr1_2:73084548-73084567 | None:intergenic | 35.0% | |
GCAGCAAAAGCAATAACAAA+TGG | + | chr1_2:73084671-73084690 | Msa0090950:intron | 35.0% | |
!! | GTGGTATCTAGAGTTTTATG+TGG | + | chr1_2:73085048-73085067 | Msa0090950:intron | 35.0% |
ATAATCAGCTACACAGGAAA+TGG | - | chr1_2:73085094-73085113 | None:intergenic | 35.0% | |
CCTTTAATAATCAGCTACAC+AGG | - | chr1_2:73085100-73085119 | None:intergenic | 35.0% | |
CCTGTGTAGCTGATTATTAA+AGG | + | chr1_2:73085097-73085116 | Msa0090950:intron | 35.0% | |
GAATCTTCAAGAAATCATGG+AGG | - | chr1_2:73085321-73085340 | None:intergenic | 35.0% | |
!! | TTTTGATGTGGTTTGGATGT+TGG | + | chr1_2:73085367-73085386 | Msa0090950:intron | 35.0% |
CATCACAAATTAGACGGTTA+TGG | - | chr1_2:73085396-73085415 | None:intergenic | 35.0% | |
TCAGAGAAAGACTGATGGAA+TGG | + | chr1_2:73082893-73082912 | Msa0090950:CDS | 40.0% | |
!!! | GCGCCAAATTTTTAGGGTTA+GGG | + | chr1_2:73083068-73083087 | Msa0090950:intron | 40.0% |
GGTTATGCATAGTGAACCTT+TGG | + | chr1_2:73083089-73083108 | Msa0090950:intron | 40.0% | |
GTGATGCCTAAAAATTTGGG+TGG | + | chr1_2:73083175-73083194 | Msa0090950:intron | 40.0% | |
! | GCAATGCCACCCAAATTTTT+AGG | - | chr1_2:73083184-73083203 | None:intergenic | 40.0% |
! | AACCTGATTGGTCAATTGTG+TGG | - | chr1_2:73083226-73083245 | None:intergenic | 40.0% |
TGTGTGTCTCAAAACCTGAT+TGG | - | chr1_2:73083238-73083257 | None:intergenic | 40.0% | |
! | CGTCATCATCTCAGAGTTTT+CGG | - | chr1_2:73083422-73083441 | None:intergenic | 40.0% |
GATAACGATGCGAAAGCTAA+CGG | + | chr1_2:73083446-73083465 | Msa0090950:intron | 40.0% | |
ATAACGATGCGAAAGCTAAC+GGG | + | chr1_2:73083447-73083466 | Msa0090950:intron | 40.0% | |
CTCCTCTTCTTTGTGACAAA+AGG | + | chr1_2:73083595-73083614 | Msa0090950:intron | 40.0% | |
CTGCCCTTATAGAACACTAA+TGG | - | chr1_2:73083828-73083847 | None:intergenic | 40.0% | |
TCTATAAGGGCAGTGATAGA+TGG | + | chr1_2:73083835-73083854 | Msa0090950:intron | 40.0% | |
!! | GAGCTTGCTAAACCTGAATT+AGG | + | chr1_2:73084414-73084433 | Msa0090950:CDS | 40.0% |
! | CAACTGCATTTTGCAATTGC+AGG | + | chr1_2:73084610-73084629 | Msa0090950:intron | 40.0% |
! | TTTTGCAATTGCAGGAGCTA+TGG | + | chr1_2:73084618-73084637 | Msa0090950:intron | 40.0% |
TTTGCAATTGCAGGAGCTAT+GGG | + | chr1_2:73084619-73084638 | Msa0090950:intron | 40.0% | |
TATTGAAGAAACTCCGTGAG+TGG | - | chr1_2:73085236-73085255 | None:intergenic | 40.0% | |
CACAAATTAGACGGTTATGG+AGG | - | chr1_2:73085393-73085412 | None:intergenic | 40.0% | |
! | TCTAAAACCATGTTCAGCCA+TGG | + | chr1_2:73085429-73085448 | Msa0090950:intron | 40.0% |
! | TAGCTGGAATTTTGCTTCGA+TGG | - | chr1_2:73085489-73085508 | None:intergenic | 40.0% |
!!! | GGTTTTGGAATAATAGGGGT+AGG | + | chr1_2:73085520-73085539 | Msa0090950:CDS | 40.0% |
GGTAGGCATATTGATCTTGA+AGG | + | chr1_2:73085537-73085556 | Msa0090950:CDS | 40.0% | |
!!! | GGCGCCAAATTTTTAGGGTT+AGG | + | chr1_2:73083067-73083086 | Msa0090950:intron | 45.0% |
! | CTGATTGGTCAATTGTGTGG+TGG | - | chr1_2:73083223-73083242 | None:intergenic | 45.0% |
CACCACACAATTGACCAATC+AGG | + | chr1_2:73083221-73083240 | Msa0090950:intron | 45.0% | |
AGAGAGAGAGAGAGATGGAA+TGG | - | chr1_2:73083363-73083382 | None:intergenic | 45.0% | |
AAAGCTAACGGGATCGAATG+TGG | + | chr1_2:73083458-73083477 | Msa0090950:intron | 45.0% | |
!! | TTTTTCGAACGTTGAGTCGG+AGG | + | chr1_2:73083490-73083509 | Msa0090950:intron | 45.0% |
GTCACATTCACACAGAGAAG+AGG | - | chr1_2:73083536-73083555 | None:intergenic | 45.0% | |
!!! | GGTTTTGTTTGGTGACAGAC+TGG | + | chr1_2:73083923-73083942 | Msa0090950:intron | 45.0% |
! | GTGCTCTGTTTGAAGTGTAG+TGG | + | chr1_2:73084282-73084301 | Msa0090950:intron | 45.0% |
TTCCATCTGTTTGCCACTCA+CGG | + | chr1_2:73085220-73085239 | Msa0090950:intron | 45.0% | |
!!! | AGGGAGGGCGCCAAATTTTT+AGG | + | chr1_2:73083061-73083080 | Msa0090950:intron | 50.0% |
!!! | GGGAGGGCGCCAAATTTTTA+GGG | + | chr1_2:73083062-73083081 | Msa0090950:intron | 50.0% |
GAGAGAGAGAGAGAGAGAGA+TGG | - | chr1_2:73083368-73083387 | None:intergenic | 50.0% | |
TGAGTCGGAGGAAGCGAATA+CGG | + | chr1_2:73083502-73083521 | Msa0090950:intron | 50.0% | |
AGGTAAGCCATGGCTGAACA+TGG | - | chr1_2:73085439-73085458 | None:intergenic | 50.0% | |
CTCCGTGAGTGGCAAACAGA+TGG | - | chr1_2:73085225-73085244 | None:intergenic | 55.0% | |
CGGCGATGCACATCGCAAAG+AGG | - | chr1_2:73083402-73083421 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 73082882 | 73085572 | 73082882 | ID=Msa0090950;Name=Msa0090950 |
chr1_2 | mRNA | 73082882 | 73085572 | 73082882 | ID=Msa0090950-mRNA-1;Parent=Msa0090950;Name=Msa0090950-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0.33|0.66|1|0.66|3|0|62 |
chr1_2 | exon | 73082882 | 73082914 | 73082882 | ID=Msa0090950-mRNA-1:exon:25460;Parent=Msa0090950-mRNA-1 |
chr1_2 | exon | 73084399 | 73084458 | 73084399 | ID=Msa0090950-mRNA-1:exon:25461;Parent=Msa0090950-mRNA-1 |
chr1_2 | exon | 73085477 | 73085572 | 73085477 | ID=Msa0090950-mRNA-1:exon:25462;Parent=Msa0090950-mRNA-1 |
chr1_2 | CDS | 73082882 | 73082914 | 73082882 | ID=Msa0090950-mRNA-1:cds;Parent=Msa0090950-mRNA-1 |
chr1_2 | CDS | 73084399 | 73084458 | 73084399 | ID=Msa0090950-mRNA-1:cds;Parent=Msa0090950-mRNA-1 |
chr1_2 | CDS | 73085477 | 73085572 | 73085477 | ID=Msa0090950-mRNA-1:cds;Parent=Msa0090950-mRNA-1 |
Gene Sequence |
Protein sequence |