Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0943190 | XP_024640239.1 | 78.629 | 248 | 29 | 4 | 1 | 228 | 1 | 244 | 2.43e-116 | 342 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0943190 | G7JXF0 | 78.629 | 248 | 29 | 4 | 1 | 228 | 1 | 244 | 1.16e-116 | 342 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007990 | Msa0943190 | 0.805273 | 1.445352e-49 | -8.615850e-47 |
| Msa0018070 | Msa0943190 | 0.809126 | 2.207340e-50 | -8.615850e-47 |
| Msa0037540 | Msa0943190 | -0.806345 | 8.605811e-50 | -8.615850e-47 |
| Msa0037570 | Msa0943190 | -0.801755 | 7.752352e-49 | -8.615850e-47 |
| Msa0037590 | Msa0943190 | -0.801547 | 8.554339e-49 | -8.615850e-47 |
| Msa0047110 | Msa0943190 | 0.801962 | 7.027758e-49 | -8.615850e-47 |
| Msa0052400 | Msa0943190 | 0.800660 | 1.298797e-48 | -8.615850e-47 |
| Msa0090950 | Msa0943190 | 0.807838 | 4.156322e-50 | -8.615850e-47 |
| Msa0092410 | Msa0943190 | 0.818654 | 1.751093e-52 | -8.615850e-47 |
| Msa0103250 | Msa0943190 | 0.807579 | 4.718567e-50 | -8.615850e-47 |
| Msa0104700 | Msa0943190 | 0.800180 | 1.626131e-48 | -8.615850e-47 |
| Msa0109590 | Msa0943190 | 0.814213 | 1.727538e-51 | -8.615850e-47 |
| Msa0115270 | Msa0943190 | 0.802805 | 4.713376e-49 | -8.615850e-47 |
| Msa0614920 | Msa0943190 | 0.808101 | 3.653889e-50 | -8.615850e-47 |
| Msa0615010 | Msa0943190 | 0.824951 | 6.110202e-54 | -8.615850e-47 |
| Msa0622170 | Msa0943190 | -0.806376 | 8.475668e-50 | -8.615850e-47 |
| Msa0626850 | Msa0943190 | 0.812520 | 4.069112e-51 | -8.615850e-47 |
| Msa0641670 | Msa0943190 | 0.831860 | 1.313573e-55 | -8.615850e-47 |
| Msa0648860 | Msa0943190 | 0.812927 | 3.313262e-51 | -8.615850e-47 |
| Msa0657870 | Msa0943190 | 0.802282 | 6.039579e-49 | -8.615850e-47 |
| Msa0661650 | Msa0943190 | 0.804653 | 1.948022e-49 | -8.615850e-47 |
| Msa0664970 | Msa0943190 | 0.821830 | 3.277619e-53 | -8.615850e-47 |
| Msa0667740 | Msa0943190 | 0.801113 | 1.049552e-48 | -8.615850e-47 |
| Msa0672450 | Msa0943190 | 0.806859 | 6.704624e-50 | -8.615850e-47 |
| Msa0679290 | Msa0943190 | -0.803762 | 2.986582e-49 | -8.615850e-47 |
| Msa0689780 | Msa0943190 | 0.803731 | 3.031030e-49 | -8.615850e-47 |
| Msa0708310 | Msa0943190 | 0.836488 | 9.085387e-57 | -8.615850e-47 |
| Msa0711150 | Msa0943190 | 0.827455 | 1.549774e-54 | -8.615850e-47 |
| Msa0721340 | Msa0943190 | 0.801207 | 1.004211e-48 | -8.615850e-47 |
| Msa0742150 | Msa0943190 | 0.801025 | 1.094061e-48 | -8.615850e-47 |
| Msa0755180 | Msa0943190 | 0.825205 | 5.321525e-54 | -8.615850e-47 |
| Msa0767170 | Msa0943190 | 0.800412 | 1.458815e-48 | -8.615850e-47 |
| Msa0768370 | Msa0943190 | 0.814667 | 1.370836e-51 | -8.615850e-47 |
| Msa0801780 | Msa0943190 | 0.806336 | 8.645379e-50 | -8.615850e-47 |
| Msa0825870 | Msa0943190 | 0.844927 | 5.581185e-59 | -8.615850e-47 |
| Msa0826150 | Msa0943190 | 0.806976 | 6.331352e-50 | -8.615850e-47 |
| Msa0826760 | Msa0943190 | 0.806775 | 6.984704e-50 | -8.615850e-47 |
| Msa0830230 | Msa0943190 | 0.815055 | 1.124852e-51 | -8.615850e-47 |
| Msa0831850 | Msa0943190 | 0.827096 | 1.888745e-54 | -8.615850e-47 |
| Msa0129190 | Msa0943190 | -0.814761 | 1.306936e-51 | -8.615850e-47 |
| Msa0131770 | Msa0943190 | 0.806571 | 7.712731e-50 | -8.615850e-47 |
| Msa0138020 | Msa0943190 | 0.803275 | 3.768294e-49 | -8.615850e-47 |
| Msa0140500 | Msa0943190 | -0.805140 | 1.541325e-49 | -8.615850e-47 |
| Msa0149300 | Msa0943190 | 0.807295 | 5.420725e-50 | -8.615850e-47 |
| Msa0150990 | Msa0943190 | 0.808883 | 2.488422e-50 | -8.615850e-47 |
| Msa0159340 | Msa0943190 | 0.809731 | 1.636739e-50 | -8.615850e-47 |
| Msa0178510 | Msa0943190 | 0.801570 | 8.462157e-49 | -8.615850e-47 |
| Msa0187830 | Msa0943190 | 0.812840 | 3.462089e-51 | -8.615850e-47 |
| Msa0190530 | Msa0943190 | 0.823505 | 1.335684e-53 | -8.615850e-47 |
| Msa0190930 | Msa0943190 | 0.805029 | 1.626016e-49 | -8.615850e-47 |
| Msa0197660 | Msa0943190 | 0.808365 | 3.209830e-50 | -8.615850e-47 |
| Msa0204840 | Msa0943190 | 0.801898 | 7.245691e-49 | -8.615850e-47 |
| Msa0208300 | Msa0943190 | 0.809369 | 1.957756e-50 | -8.615850e-47 |
| Msa0217480 | Msa0943190 | 0.804864 | 1.760033e-49 | -8.615850e-47 |
| Msa0229380 | Msa0943190 | 0.800077 | 1.707217e-48 | -8.615850e-47 |
| Msa0369920 | Msa0943190 | 0.815134 | 1.079992e-51 | -8.615850e-47 |
| Msa0371950 | Msa0943190 | 0.810741 | 9.915486e-51 | -8.615850e-47 |
| Msa0372340 | Msa0943190 | 0.820638 | 6.169379e-53 | -8.615850e-47 |
| Msa0381610 | Msa0943190 | -0.810860 | 9.342042e-51 | -8.615850e-47 |
| Msa0383800 | Msa0943190 | 0.807410 | 5.125013e-50 | -8.615850e-47 |
| Msa0394470 | Msa0943190 | 0.831559 | 1.558736e-55 | -8.615850e-47 |
| Msa0398380 | Msa0943190 | 0.812562 | 3.982207e-51 | -8.615850e-47 |
| Msa0417330 | Msa0943190 | 0.820816 | 5.614972e-53 | -8.615850e-47 |
| Msa0423860 | Msa0943190 | 0.802468 | 5.530276e-49 | -8.615850e-47 |
| Msa0428080 | Msa0943190 | 0.801572 | 8.452440e-49 | -8.615850e-47 |
| Msa0430920 | Msa0943190 | 0.817185 | 3.759591e-52 | -8.615850e-47 |
| Msa0434180 | Msa0943190 | 0.834840 | 2.374236e-56 | -8.615850e-47 |
| Msa0455760 | Msa0943190 | 0.809415 | 1.913593e-50 | -8.615850e-47 |
| Msa0239800 | Msa0943190 | 0.804615 | 1.984190e-49 | -8.615850e-47 |
| Msa0244140 | Msa0943190 | 0.813220 | 2.857238e-51 | -8.615850e-47 |
| Msa0244190 | Msa0943190 | 0.839404 | 1.616646e-57 | -8.615850e-47 |
| Msa0264830 | Msa0943190 | 0.806931 | 6.470878e-50 | -8.615850e-47 |
| Msa0267370 | Msa0943190 | 0.804847 | 1.774513e-49 | -8.615850e-47 |
| Msa0269560 | Msa0943190 | 0.808201 | 3.478523e-50 | -8.615850e-47 |
| Msa0269810 | Msa0943190 | 0.831966 | 1.236653e-55 | -8.615850e-47 |
| Msa0296820 | Msa0943190 | 0.808031 | 3.781564e-50 | -8.615850e-47 |
| Msa0305190 | Msa0943190 | 0.804673 | 1.929316e-49 | -8.615850e-47 |
| Msa0317510 | Msa0943190 | 0.800607 | 1.331028e-48 | -8.615850e-47 |
| Msa0319170 | Msa0943190 | 0.823684 | 1.213422e-53 | -8.615850e-47 |
| Msa0319290 | Msa0943190 | 0.806459 | 8.144211e-50 | -8.615850e-47 |
| Msa0333650 | Msa0943190 | 0.802637 | 5.104932e-49 | -8.615850e-47 |
| Msa0340340 | Msa0943190 | 0.805239 | 1.469591e-49 | -8.615850e-47 |
| Msa0340450 | Msa0943190 | 0.807036 | 6.149971e-50 | -8.615850e-47 |
| Msa0342750 | Msa0943190 | 0.803146 | 4.006914e-49 | -8.615850e-47 |
| Msa0347750 | Msa0943190 | 0.815083 | 1.108770e-51 | -8.615850e-47 |
| Msa0349700 | Msa0943190 | 0.813654 | 2.294328e-51 | -8.615850e-47 |
| Msa0357760 | Msa0943190 | 0.809594 | 1.751726e-50 | -8.615850e-47 |
| Msa0357790 | Msa0943190 | 0.818836 | 1.591817e-52 | -8.615850e-47 |
| Msa0357830 | Msa0943190 | 0.824042 | 9.997611e-54 | -8.615850e-47 |
| Msa0357840 | Msa0943190 | 0.817643 | 2.964100e-52 | -8.615850e-47 |
| Msa0357870 | Msa0943190 | 0.828700 | 7.770138e-55 | -8.615850e-47 |
| Msa0363790 | Msa0943190 | 0.802593 | 5.211301e-49 | -8.615850e-47 |
| Msa0512750 | Msa0943190 | 0.816098 | 6.587078e-52 | -8.615850e-47 |
| Msa0526070 | Msa0943190 | -0.814795 | 1.284413e-51 | -8.615850e-47 |
| Msa0545700 | Msa0943190 | 0.812730 | 3.659647e-51 | -8.615850e-47 |
| Msa0574600 | Msa0943190 | 0.823407 | 1.408230e-53 | -8.615850e-47 |
| Msa0584860 | Msa0943190 | 0.803263 | 3.789958e-49 | -8.615850e-47 |
| Msa0587030 | Msa0943190 | 0.815956 | 7.087505e-52 | -8.615850e-47 |
| Msa0849030 | Msa0943190 | 0.813709 | 2.231767e-51 | -8.615850e-47 |
| Msa0865330 | Msa0943190 | 0.818733 | 1.679914e-52 | -8.615850e-47 |
| Msa0870060 | Msa0943190 | 0.847507 | 1.106851e-59 | -8.615850e-47 |
| Msa0888260 | Msa0943190 | 0.824533 | 7.666285e-54 | -8.615850e-47 |
| Msa0888990 | Msa0943190 | 0.803514 | 3.362324e-49 | -8.615850e-47 |
| Msa0894710 | Msa0943190 | 0.800751 | 1.244425e-48 | -8.615850e-47 |
| Msa0896890 | Msa0943190 | 0.801130 | 1.041239e-48 | -8.615850e-47 |
| Msa0898320 | Msa0943190 | 0.806922 | 6.500316e-50 | -8.615850e-47 |
| Msa0902830 | Msa0943190 | 0.804680 | 1.923512e-49 | -8.615850e-47 |
| Msa0903370 | Msa0943190 | 0.815381 | 9.519211e-52 | -8.615850e-47 |
| Msa0914270 | Msa0943190 | 0.805681 | 1.187201e-49 | -8.615850e-47 |
| Msa0919530 | Msa0943190 | 0.801047 | 1.082622e-48 | -8.615850e-47 |
| Msa0925870 | Msa0943190 | 0.804207 | 2.413691e-49 | -8.615850e-47 |
| Msa0927380 | Msa0943190 | 0.815086 | 1.106710e-51 | -8.615850e-47 |
| Msa0932100 | Msa0943190 | 0.802020 | 6.837730e-49 | -8.615850e-47 |
| Msa0935770 | Msa0943190 | 0.821861 | 3.224379e-53 | -8.615850e-47 |
| Msa0936390 | Msa0943190 | 0.803145 | 4.008364e-49 | -8.615850e-47 |
| Msa0939110 | Msa0943190 | 0.821931 | 3.106173e-53 | -8.615850e-47 |
| Msa0939250 | Msa0943190 | 0.807870 | 4.091718e-50 | -8.615850e-47 |
| Msa0943190 | Msa0947760 | 0.800229 | 1.589587e-48 | -8.615850e-47 |
| Msa0943190 | Msa0969810 | 0.812417 | 4.284748e-51 | -8.615850e-47 |
| Msa0943190 | Msa0970230 | 0.806420 | 8.298734e-50 | -8.615850e-47 |
| Msa0943190 | Msa0972810 | 0.800631 | 1.316437e-48 | -8.615850e-47 |
| Msa0943190 | Msa0973600 | 0.812821 | 3.495706e-51 | -8.615850e-47 |
| Msa0943190 | Msa0974080 | 0.818924 | 1.520784e-52 | -8.615850e-47 |
| Msa0943190 | Msa0989620 | 0.813669 | 2.277222e-51 | -8.615850e-47 |
| Msa0943190 | Msa1007230 | 0.856406 | 3.287895e-62 | -8.615850e-47 |
| Msa0943190 | Msa1026940 | 0.835920 | 1.267126e-56 | -8.615850e-47 |
| Msa0943190 | Msa1037420 | 0.810715 | 1.004497e-50 | -8.615850e-47 |
| Msa0943190 | Msa1039710 | -0.812236 | 4.692059e-51 | -8.615850e-47 |
| Msa0943190 | Msa1063690 | 0.813614 | 2.341147e-51 | -8.615850e-47 |
| Msa0943190 | Msa1064250 | 0.815948 | 7.114320e-52 | -8.615850e-47 |
| Msa0943190 | Msa1076960 | 0.836077 | 1.155893e-56 | -8.615850e-47 |
| Msa0943190 | Msa1089460 | 0.800300 | 1.537640e-48 | -8.615850e-47 |
| Msa0943190 | Msa1100930 | 0.849792 | 2.575844e-60 | -8.615850e-47 |
| Msa0943190 | Msa1104090 | 0.810265 | 1.255992e-50 | -8.615850e-47 |
| Msa0943190 | Msa1109090 | 0.810002 | 1.431414e-50 | -8.615850e-47 |
| Msa0943190 | Msa1111870 | 0.829200 | 5.880678e-55 | -8.615850e-47 |
| Msa0943190 | Msa1120610 | 0.808611 | 2.845186e-50 | -8.615850e-47 |
| Msa0943190 | Msa1121490 | 0.818497 | 1.900955e-52 | -8.615850e-47 |
| Msa0943190 | Msa1122860 | 0.837654 | 4.575833e-57 | -8.615850e-47 |
| Msa0943190 | Msa1152920 | 0.817702 | 2.874726e-52 | -8.615850e-47 |
| Msa0943190 | Msa1156020 | 0.812186 | 4.812303e-51 | -8.615850e-47 |
| Msa0943190 | Msa1162780 | 0.816825 | 4.529061e-52 | -8.615850e-47 |
| Msa0943190 | Msa1185110 | 0.824101 | 9.688272e-54 | -8.615850e-47 |
| Msa0943190 | Msa1186950 | -0.824972 | 6.040472e-54 | -8.615850e-47 |
| Msa0943190 | Msa1200250 | 0.804345 | 2.258382e-49 | -8.615850e-47 |
| Msa0943190 | Msa1210110 | 0.880566 | 4.938167e-70 | -8.615850e-47 |
| Msa0943190 | Msa1211740 | 0.804091 | 2.551454e-49 | -8.615850e-47 |
| Msa0943190 | Msa1225100 | 0.831527 | 1.587419e-55 | -8.615850e-47 |
| Msa0943190 | Msa1236730 | 0.806796 | 6.911739e-50 | -8.615850e-47 |
| Msa0943190 | Msa1246700 | 0.828985 | 6.628098e-55 | -8.615850e-47 |
| Msa0943190 | Msa1252260 | 0.815339 | 9.723184e-52 | -8.615850e-47 |
| Msa0943190 | Msa1255720 | 0.804498 | 2.098417e-49 | -8.615850e-47 |
| Msa0943190 | Msa1276340 | 0.800206 | 1.606747e-48 | -8.615850e-47 |
| Msa0943190 | Msa1276890 | 0.800622 | 1.322239e-48 | -8.615850e-47 |
| Msa0943190 | Msa1280150 | 0.815611 | 8.461201e-52 | -8.615850e-47 |
| Msa0943190 | Msa1282580 | -0.822134 | 2.787069e-53 | -8.615850e-47 |
| Msa0943190 | Msa1287460 | 0.809337 | 1.988674e-50 | -8.615850e-47 |
| Msa0943190 | Msa1291830 | 0.820463 | 6.767743e-53 | -8.615850e-47 |
| Msa0943190 | Msa1299560 | 0.840062 | 1.090394e-57 | -8.615850e-47 |
| Msa0943190 | Msa1299620 | 0.839652 | 1.393914e-57 | -8.615850e-47 |
| Msa0943190 | Msa1302850 | 0.816662 | 4.927467e-52 | -8.615850e-47 |
| Msa0943190 | Msa1304890 | -0.805267 | 1.449842e-49 | -8.615850e-47 |
| Msa0943190 | Msa1305810 | 0.801081 | 1.065398e-48 | -8.615850e-47 |
| Msa0943190 | Msa1311340 | 0.801926 | 7.150164e-49 | -8.615850e-47 |
| Msa0943190 | Msa1312520 | 0.805316 | 1.415682e-49 | -8.615850e-47 |
| Msa0943190 | Msa1316640 | 0.808061 | 3.726222e-50 | -8.615850e-47 |
| Msa0943190 | Msa1317130 | 0.802848 | 4.616776e-49 | -8.615850e-47 |
| Msa0943190 | Msa1329870 | 0.831026 | 2.107739e-55 | -8.615850e-47 |
| Msa0943190 | Msa1343250 | 0.801510 | 8.704479e-49 | -8.615850e-47 |
| Msa0943190 | Msa1353890 | 0.818699 | 1.709952e-52 | -8.615850e-47 |
| Msa0943190 | Msa1355890 | 0.843900 | 1.054404e-58 | -8.615850e-47 |
| Msa0943190 | Msa1365270 | 0.824758 | 6.784851e-54 | -8.615850e-47 |
| Msa0943190 | Msa1379500 | 0.838050 | 3.619433e-57 | -8.615850e-47 |
| Msa0943190 | Msa1382790 | 0.810393 | 1.178999e-50 | -8.615850e-47 |
| Msa0943190 | Msa1391550 | 0.806561 | 7.747444e-50 | -8.615850e-47 |
| Msa0943190 | Msa1394380 | 0.813600 | 2.357509e-51 | -8.615850e-47 |
| Msa0943190 | Msa1405220 | 0.827012 | 1.978862e-54 | -8.615850e-47 |
| Msa0943190 | Msa1410680 | 0.812228 | 4.711330e-51 | -8.615850e-47 |
| Msa0943190 | Msa1420270 | 0.805305 | 1.423183e-49 | -8.615850e-47 |
| Msa0943190 | Msa1424630 | 0.807030 | 6.168643e-50 | -8.615850e-47 |
| Msa0943190 | Msa1424750 | 0.800901 | 1.159484e-48 | -8.615850e-47 |
| Msa0943190 | Msa1445390 | -0.803486 | 3.407312e-49 | -8.615850e-47 |
| Msa0943190 | Msa1449340 | -0.804704 | 1.901406e-49 | -8.615850e-47 |
| Msa0943190 | Msa1454570 | 0.812343 | 4.446629e-51 | -8.615850e-47 |
| Msa0943190 | Msa1457160 | 0.845144 | 4.878457e-59 | -8.615850e-47 |
| Msa0943190 | Msa1461550 | 0.864214 | 1.428747e-64 | -8.615850e-47 |
| Msa0943190 | Msa1462360 | 0.817267 | 3.602875e-52 | -8.615850e-47 |
| Msa0943190 | Msa1466540 | 0.808173 | 3.527527e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0943190 | MtrunA17_Chr5g0399521 | 78.629 | 248 | 29 | 4 | 1 | 228 | 1 | 244 | 2.24e-120 | 342 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 42 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTTCTCACCCTCTTAT+TGG | 0.125551 | 6_3:-18629157 | Msa0943190:CDS |
| ACAATTGTCCTTCTTTCTTA+TGG | 0.166180 | 6_3:+18628174 | None:intergenic |
| AGCTTCTTCATTATCAAATT+TGG | 0.202491 | 6_3:-18628080 | Msa0943190:three_prime_UTR |
| GAGTATGATACCAACGTTTC+TGG | 0.204976 | 6_3:-18629039 | Msa0943190:CDS |
| GCATAGCGTGGCAGATTTCT+AGG | 0.263550 | 6_3:-18628150 | Msa0943190:exon |
| AATCACCATATGATGGAAAA+TGG | 0.264273 | 6_3:+18628980 | None:intergenic |
| TCACCATCCATTTCACATAA+AGG | 0.328149 | 6_3:-18629082 | Msa0943190:CDS |
| CACCATCCATTTCACATAAA+GGG | 0.353305 | 6_3:-18629081 | Msa0943190:CDS |
| AGTAGTATTGGAACGGTGTA+AGG | 0.374657 | 6_3:+18628859 | None:intergenic |
| CATTGCAGTTAACAGTGGTT+TGG | 0.406104 | 6_3:+18629124 | None:intergenic |
| GAACTAGGCATAGGAACTTC+AGG | 0.411130 | 6_3:+18628723 | None:intergenic |
| TTGGTGTCATAGCTAGGAAA+TGG | 0.415458 | 6_3:+18628945 | None:intergenic |
| TAAGAACGTAGTAGTAGTAT+TGG | 0.422533 | 6_3:+18628847 | None:intergenic |
| ATTGAAGTTCCATGTTTAAG+TGG | 0.434981 | 6_3:-18628774 | Msa0943190:CDS |
| TGTTGACCCTTTATGTGAAA+TGG | 0.435749 | 6_3:+18629075 | None:intergenic |
| GTTAACTGCAATGATATTGC+TGG | 0.469691 | 6_3:-18629114 | Msa0943190:CDS |
| GGAAGATGAAAACCAATAAG+AGG | 0.470389 | 6_3:+18629145 | None:intergenic |
| GTGGCACTGGCAATACTTGT+AGG | 0.471106 | 6_3:-18628227 | Msa0943190:CDS |
| TATATTTCAGACAACAGTCT+TGG | 0.476999 | 6_3:-18628650 | Msa0943190:intron |
| GCATAAAGATTCATTTATCA+AGG | 0.481020 | 6_3:-18628205 | Msa0943190:CDS |
| AGGAATTTCCATAAGAAAGA+AGG | 0.501383 | 6_3:-18628182 | Msa0943190:CDS |
| ACTACCAAATCACCATATGA+TGG | 0.518082 | 6_3:+18628973 | None:intergenic |
| ATTGGAACGGTGTAAGGGTA+AGG | 0.526222 | 6_3:+18628865 | None:intergenic |
| ACGGTGTAAGGGTAAGGTTA+AGG | 0.528357 | 6_3:+18628871 | None:intergenic |
| TCTCACACAGCACGCAATAC+AGG | 0.540563 | 6_3:-18628560 | Msa0943190:intron |
| GAAGATGAAAACCAATAAGA+GGG | 0.588444 | 6_3:+18629146 | None:intergenic |
| TGAAATGGATGGTGAATGCT+AGG | 0.594019 | 6_3:+18629090 | None:intergenic |
| AGGACAATTGTTGCATAGCG+TGG | 0.602254 | 6_3:-18628162 | Msa0943190:CDS |
| AGATTTCTAGGACTTAGTAA+AGG | 0.603809 | 6_3:-18628138 | Msa0943190:exon |
| AATATCATTGCAGTTAACAG+TGG | 0.610978 | 6_3:+18629119 | None:intergenic |
| GTAGTATTGGAACGGTGTAA+GGG | 0.612233 | 6_3:+18628860 | None:intergenic |
| CTTCTAAAGATAGCAAACAA+TGG | 0.615242 | 6_3:-18628598 | Msa0943190:CDS |
| AAGCTCAAAACCAGAAACGT+TGG | 0.625323 | 6_3:+18629029 | None:intergenic |
| ACCATATGATGGAAAATGGA+TGG | 0.629849 | 6_3:+18628984 | None:intergenic |
| TAACTTGAACCACTTAAACA+TGG | 0.633744 | 6_3:+18628765 | None:intergenic |
| GTCTTGGTCTTAGATTAACA+TGG | 0.638466 | 6_3:-18628634 | Msa0943190:CDS |
| TAAAGATTCATTTATCAAGG+AGG | 0.638802 | 6_3:-18628202 | Msa0943190:CDS |
| ACGTAGTAGTAGTATTGGAA+CGG | 0.640329 | 6_3:+18628852 | None:intergenic |
| TCTTGGTCTTAGATTAACAT+GGG | 0.645510 | 6_3:-18628633 | Msa0943190:CDS |
| GACCCTTTATGTGAAATGGA+TGG | 0.667396 | 6_3:+18629079 | None:intergenic |
| TAAGGTTGAGAAAGACTCTG+TGG | 0.692883 | 6_3:+18628889 | None:intergenic |
| ATATGATGGAAAATGGATGG+TGG | 0.752714 | 6_3:+18628987 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGAAAATTATAAAGAAAA+TGG | - | chr6_3:18628868-18628887 | Msa0943190:CDS | 10.0% |
| !! | AATGAAAATTATAAAGAAAA+TGG | - | chr6_3:18628868-18628887 | Msa0943190:CDS | 10.0% |
| !! | TTTGTAATTAAAGAAAGAAA+TGG | + | chr6_3:18628684-18628703 | None:intergenic | 15.0% |
| !! | TTTGTAATTAAAGAAAGAAA+TGG | + | chr6_3:18628684-18628703 | None:intergenic | 15.0% |
| !! | ATAATTTACTTATACTAGGT+TGG | - | chr6_3:18628722-18628741 | Msa0943190:intron | 20.0% |
| !! | TAATTTACTTATACTAGGTT+GGG | - | chr6_3:18628723-18628742 | Msa0943190:intron | 20.0% |
| !! | ATAATTTACTTATACTAGGT+TGG | - | chr6_3:18628722-18628741 | Msa0943190:intron | 20.0% |
| !! | TAATTTACTTATACTAGGTT+GGG | - | chr6_3:18628723-18628742 | Msa0943190:intron | 20.0% |
| !! | ATCAAGAAGATCAATCTTTT+TGG | + | chr6_3:18628284-18628303 | None:intergenic | 25.0% |
| !!! | TTTTGTTTGTGAAAGTCTTT+TGG | + | chr6_3:18628410-18628429 | None:intergenic | 25.0% |
| !!! | TTGACTTTTTTACATGAACT+AGG | + | chr6_3:18628502-18628521 | None:intergenic | 25.0% |
| ! | TTGAAAGGAATATATAGCAA+TGG | + | chr6_3:18628527-18628546 | None:intergenic | 25.0% |
| ! | ATATAAGGGCTATATTTGAA+AGG | + | chr6_3:18628542-18628561 | None:intergenic | 25.0% |
| ! | GAGCATAATTTACTTATACT+AGG | - | chr6_3:18628718-18628737 | Msa0943190:intron | 25.0% |
| ! | GCATAAAGATTCATTTATCA+AGG | - | chr6_3:18629002-18629021 | Msa0943190:CDS | 25.0% |
| ! | TAAAGATTCATTTATCAAGG+AGG | - | chr6_3:18629005-18629024 | Msa0943190:CDS | 25.0% |
| ! | AGCTTCTTCATTATCAAATT+TGG | - | chr6_3:18629127-18629146 | Msa0943190:CDS | 25.0% |
| !! | ATCAAGAAGATCAATCTTTT+TGG | + | chr6_3:18628284-18628303 | None:intergenic | 25.0% |
| !!! | TTTTGTTTGTGAAAGTCTTT+TGG | + | chr6_3:18628410-18628429 | None:intergenic | 25.0% |
| !!! | TTGACTTTTTTACATGAACT+AGG | + | chr6_3:18628502-18628521 | None:intergenic | 25.0% |
| ! | TTGAAAGGAATATATAGCAA+TGG | + | chr6_3:18628527-18628546 | None:intergenic | 25.0% |
| ! | ATATAAGGGCTATATTTGAA+AGG | + | chr6_3:18628542-18628561 | None:intergenic | 25.0% |
| ! | GAGCATAATTTACTTATACT+AGG | - | chr6_3:18628718-18628737 | Msa0943190:intron | 25.0% |
| ! | GCATAAAGATTCATTTATCA+AGG | - | chr6_3:18629002-18629021 | Msa0943190:CDS | 25.0% |
| ! | TAAAGATTCATTTATCAAGG+AGG | - | chr6_3:18629005-18629024 | Msa0943190:CDS | 25.0% |
| ! | AGCTTCTTCATTATCAAATT+TGG | - | chr6_3:18629127-18629146 | Msa0943190:CDS | 25.0% |
| GAAGATGAAAACCAATAAGA+GGG | + | chr6_3:18628064-18628083 | None:intergenic | 30.0% | |
| AATATCATTGCAGTTAACAG+TGG | + | chr6_3:18628091-18628110 | None:intergenic | 30.0% | |
| ! | AATCACCATATGATGGAAAA+TGG | + | chr6_3:18628230-18628249 | None:intergenic | 30.0% |
| ! | TTTTCCATCATATGGTGATT+TGG | - | chr6_3:18628230-18628249 | Msa0943190:CDS | 30.0% |
| TAAGAACGTAGTAGTAGTAT+TGG | + | chr6_3:18628363-18628382 | None:intergenic | 30.0% | |
| ATTGAAGTTCCATGTTTAAG+TGG | - | chr6_3:18628433-18628452 | Msa0943190:intron | 30.0% | |
| TAACTTGAACCACTTAAACA+TGG | + | chr6_3:18628445-18628464 | None:intergenic | 30.0% | |
| ! | TTTTTACATGAACTAGGCAT+AGG | + | chr6_3:18628496-18628515 | None:intergenic | 30.0% |
| ! | GACTGTTGTCTGAAATATAA+GGG | + | chr6_3:18628556-18628575 | None:intergenic | 30.0% |
| ! | AGACTGTTGTCTGAAATATA+AGG | + | chr6_3:18628557-18628576 | None:intergenic | 30.0% |
| TATATTTCAGACAACAGTCT+TGG | - | chr6_3:18628557-18628576 | Msa0943190:intron | 30.0% | |
| !! | TCTTGGTCTTAGATTAACAT+GGG | - | chr6_3:18628574-18628593 | Msa0943190:CDS | 30.0% |
| ! | CTTCTAAAGATAGCAAACAA+TGG | - | chr6_3:18628609-18628628 | Msa0943190:CDS | 30.0% |
| AGGAATTTCCATAAGAAAGA+AGG | - | chr6_3:18629025-18629044 | Msa0943190:CDS | 30.0% | |
| ACAATTGTCCTTCTTTCTTA+TGG | + | chr6_3:18629036-18629055 | None:intergenic | 30.0% | |
| !! | AGATTTCTAGGACTTAGTAA+AGG | - | chr6_3:18629069-18629088 | Msa0943190:CDS | 30.0% |
| GAAGATGAAAACCAATAAGA+GGG | + | chr6_3:18628064-18628083 | None:intergenic | 30.0% | |
| AATATCATTGCAGTTAACAG+TGG | + | chr6_3:18628091-18628110 | None:intergenic | 30.0% | |
| ! | AATCACCATATGATGGAAAA+TGG | + | chr6_3:18628230-18628249 | None:intergenic | 30.0% |
| ! | TTTTCCATCATATGGTGATT+TGG | - | chr6_3:18628230-18628249 | Msa0943190:CDS | 30.0% |
| TAAGAACGTAGTAGTAGTAT+TGG | + | chr6_3:18628363-18628382 | None:intergenic | 30.0% | |
| ATTGAAGTTCCATGTTTAAG+TGG | - | chr6_3:18628433-18628452 | Msa0943190:intron | 30.0% | |
| TAACTTGAACCACTTAAACA+TGG | + | chr6_3:18628445-18628464 | None:intergenic | 30.0% | |
| ! | TTTTTACATGAACTAGGCAT+AGG | + | chr6_3:18628496-18628515 | None:intergenic | 30.0% |
| ! | GACTGTTGTCTGAAATATAA+GGG | + | chr6_3:18628556-18628575 | None:intergenic | 30.0% |
| ! | AGACTGTTGTCTGAAATATA+AGG | + | chr6_3:18628557-18628576 | None:intergenic | 30.0% |
| TATATTTCAGACAACAGTCT+TGG | - | chr6_3:18628557-18628576 | Msa0943190:intron | 30.0% | |
| !! | TCTTGGTCTTAGATTAACAT+GGG | - | chr6_3:18628574-18628593 | Msa0943190:CDS | 30.0% |
| ! | CTTCTAAAGATAGCAAACAA+TGG | - | chr6_3:18628609-18628628 | Msa0943190:CDS | 30.0% |
| AGGAATTTCCATAAGAAAGA+AGG | - | chr6_3:18629025-18629044 | Msa0943190:CDS | 30.0% | |
| ACAATTGTCCTTCTTTCTTA+TGG | + | chr6_3:18629036-18629055 | None:intergenic | 30.0% | |
| !! | AGATTTCTAGGACTTAGTAA+AGG | - | chr6_3:18629069-18629088 | Msa0943190:CDS | 30.0% |
| GGAAGATGAAAACCAATAAG+AGG | + | chr6_3:18628065-18628084 | None:intergenic | 35.0% | |
| GTTAACTGCAATGATATTGC+TGG | - | chr6_3:18628093-18628112 | Msa0943190:three_prime_UTR | 35.0% | |
| TCACCATCCATTTCACATAA+AGG | - | chr6_3:18628125-18628144 | Msa0943190:three_prime_UTR | 35.0% | |
| CACCATCCATTTCACATAAA+GGG | - | chr6_3:18628126-18628145 | Msa0943190:three_prime_UTR | 35.0% | |
| TGTTGACCCTTTATGTGAAA+TGG | + | chr6_3:18628135-18628154 | None:intergenic | 35.0% | |
| ! | ATATGATGGAAAATGGATGG+TGG | + | chr6_3:18628223-18628242 | None:intergenic | 35.0% |
| ! | ACCATCCATTTTCCATCATA+TGG | - | chr6_3:18628222-18628241 | Msa0943190:CDS | 35.0% |
| ! | ACCATATGATGGAAAATGGA+TGG | + | chr6_3:18628226-18628245 | None:intergenic | 35.0% |
| ACTACCAAATCACCATATGA+TGG | + | chr6_3:18628237-18628256 | None:intergenic | 35.0% | |
| !!! | ATCTTTTTGGTGTCATAGCT+AGG | + | chr6_3:18628271-18628290 | None:intergenic | 35.0% |
| ! | ACGTAGTAGTAGTATTGGAA+CGG | + | chr6_3:18628358-18628377 | None:intergenic | 35.0% |
| !!! | AAAGTCTTTTGGAGCAATTG+AGG | + | chr6_3:18628399-18628418 | None:intergenic | 35.0% |
| !! | GTCTTGGTCTTAGATTAACA+TGG | - | chr6_3:18628573-18628592 | Msa0943190:CDS | 35.0% |
| ! | TTATACTAGGTTGGGTAGTT+TGG | - | chr6_3:18628731-18628750 | Msa0943190:CDS | 35.0% |
| TAGTGCATTATCTTTCGTGT+AGG | - | chr6_3:18628765-18628784 | Msa0943190:CDS | 35.0% | |
| AGTGCATTATCTTTCGTGTA+GGG | - | chr6_3:18628766-18628785 | Msa0943190:CDS | 35.0% | |
| TTCAACATATGTGCAGTTCT+TGG | - | chr6_3:18628935-18628954 | Msa0943190:CDS | 35.0% | |
| GGAAGATGAAAACCAATAAG+AGG | + | chr6_3:18628065-18628084 | None:intergenic | 35.0% | |
| GTTAACTGCAATGATATTGC+TGG | - | chr6_3:18628093-18628112 | Msa0943190:three_prime_UTR | 35.0% | |
| TCACCATCCATTTCACATAA+AGG | - | chr6_3:18628125-18628144 | Msa0943190:three_prime_UTR | 35.0% | |
| CACCATCCATTTCACATAAA+GGG | - | chr6_3:18628126-18628145 | Msa0943190:three_prime_UTR | 35.0% | |
| TGTTGACCCTTTATGTGAAA+TGG | + | chr6_3:18628135-18628154 | None:intergenic | 35.0% | |
| ! | ATATGATGGAAAATGGATGG+TGG | + | chr6_3:18628223-18628242 | None:intergenic | 35.0% |
| ! | ACCATCCATTTTCCATCATA+TGG | - | chr6_3:18628222-18628241 | Msa0943190:CDS | 35.0% |
| ! | ACCATATGATGGAAAATGGA+TGG | + | chr6_3:18628226-18628245 | None:intergenic | 35.0% |
| ACTACCAAATCACCATATGA+TGG | + | chr6_3:18628237-18628256 | None:intergenic | 35.0% | |
| !!! | ATCTTTTTGGTGTCATAGCT+AGG | + | chr6_3:18628271-18628290 | None:intergenic | 35.0% |
| ! | ACGTAGTAGTAGTATTGGAA+CGG | + | chr6_3:18628358-18628377 | None:intergenic | 35.0% |
| !!! | AAAGTCTTTTGGAGCAATTG+AGG | + | chr6_3:18628399-18628418 | None:intergenic | 35.0% |
| !! | GTCTTGGTCTTAGATTAACA+TGG | - | chr6_3:18628573-18628592 | Msa0943190:CDS | 35.0% |
| ! | TTATACTAGGTTGGGTAGTT+TGG | - | chr6_3:18628731-18628750 | Msa0943190:CDS | 35.0% |
| TAGTGCATTATCTTTCGTGT+AGG | - | chr6_3:18628765-18628784 | Msa0943190:CDS | 35.0% | |
| AGTGCATTATCTTTCGTGTA+GGG | - | chr6_3:18628766-18628785 | Msa0943190:CDS | 35.0% | |
| TTCAACATATGTGCAGTTCT+TGG | - | chr6_3:18628935-18628954 | Msa0943190:CDS | 35.0% | |
| CTTCTTTCTCACCCTCTTAT+TGG | - | chr6_3:18628050-18628069 | Msa0943190:three_prime_UTR | 40.0% | |
| CATTGCAGTTAACAGTGGTT+TGG | + | chr6_3:18628086-18628105 | None:intergenic | 40.0% | |
| TGAAATGGATGGTGAATGCT+AGG | + | chr6_3:18628120-18628139 | None:intergenic | 40.0% | |
| GACCCTTTATGTGAAATGGA+TGG | + | chr6_3:18628131-18628150 | None:intergenic | 40.0% | |
| GAGTATGATACCAACGTTTC+TGG | - | chr6_3:18628168-18628187 | Msa0943190:CDS | 40.0% | |
| AAGCTCAAAACCAGAAACGT+TGG | + | chr6_3:18628181-18628200 | None:intergenic | 40.0% | |
| !! | TTGGTGTCATAGCTAGGAAA+TGG | + | chr6_3:18628265-18628284 | None:intergenic | 40.0% |
| ! | ACTCTGTGGACACAGTTTTT+GGG | + | chr6_3:18628307-18628326 | None:intergenic | 40.0% |
| TAAGGTTGAGAAAGACTCTG+TGG | + | chr6_3:18628321-18628340 | None:intergenic | 40.0% | |
| ! | GTAGTATTGGAACGGTGTAA+GGG | + | chr6_3:18628350-18628369 | None:intergenic | 40.0% |
| ! | AGTAGTATTGGAACGGTGTA+AGG | + | chr6_3:18628351-18628370 | None:intergenic | 40.0% |
| ! | TCTTTCGTGTAGGGTTGATT+CGG | - | chr6_3:18628775-18628794 | Msa0943190:CDS | 40.0% |
| ! | TCTCAGCATCTGTATTTTCG+TGG | - | chr6_3:18628958-18628977 | Msa0943190:intron | 40.0% |
| CTTCTTTCTCACCCTCTTAT+TGG | - | chr6_3:18628050-18628069 | Msa0943190:three_prime_UTR | 40.0% | |
| CATTGCAGTTAACAGTGGTT+TGG | + | chr6_3:18628086-18628105 | None:intergenic | 40.0% | |
| TGAAATGGATGGTGAATGCT+AGG | + | chr6_3:18628120-18628139 | None:intergenic | 40.0% | |
| GACCCTTTATGTGAAATGGA+TGG | + | chr6_3:18628131-18628150 | None:intergenic | 40.0% | |
| GAGTATGATACCAACGTTTC+TGG | - | chr6_3:18628168-18628187 | Msa0943190:CDS | 40.0% | |
| AAGCTCAAAACCAGAAACGT+TGG | + | chr6_3:18628181-18628200 | None:intergenic | 40.0% | |
| !! | TTGGTGTCATAGCTAGGAAA+TGG | + | chr6_3:18628265-18628284 | None:intergenic | 40.0% |
| ! | ACTCTGTGGACACAGTTTTT+GGG | + | chr6_3:18628307-18628326 | None:intergenic | 40.0% |
| TAAGGTTGAGAAAGACTCTG+TGG | + | chr6_3:18628321-18628340 | None:intergenic | 40.0% | |
| ! | GTAGTATTGGAACGGTGTAA+GGG | + | chr6_3:18628350-18628369 | None:intergenic | 40.0% |
| ! | AGTAGTATTGGAACGGTGTA+AGG | + | chr6_3:18628351-18628370 | None:intergenic | 40.0% |
| ! | TCTTTCGTGTAGGGTTGATT+CGG | - | chr6_3:18628775-18628794 | Msa0943190:CDS | 40.0% |
| ! | TCTCAGCATCTGTATTTTCG+TGG | - | chr6_3:18628958-18628977 | Msa0943190:intron | 40.0% |
| ! | GACTCTGTGGACACAGTTTT+TGG | + | chr6_3:18628308-18628327 | None:intergenic | 45.0% |
| ACGGTGTAAGGGTAAGGTTA+AGG | + | chr6_3:18628339-18628358 | None:intergenic | 45.0% | |
| ATTGGAACGGTGTAAGGGTA+AGG | + | chr6_3:18628345-18628364 | None:intergenic | 45.0% | |
| GAACTAGGCATAGGAACTTC+AGG | + | chr6_3:18628487-18628506 | None:intergenic | 45.0% | |
| ! | CAGCATCTGTATTTTCGTGG+TGG | - | chr6_3:18628961-18628980 | Msa0943190:intron | 45.0% |
| AGGACAATTGTTGCATAGCG+TGG | - | chr6_3:18629045-18629064 | Msa0943190:CDS | 45.0% | |
| ! | GACTCTGTGGACACAGTTTT+TGG | + | chr6_3:18628308-18628327 | None:intergenic | 45.0% |
| ACGGTGTAAGGGTAAGGTTA+AGG | + | chr6_3:18628339-18628358 | None:intergenic | 45.0% | |
| ATTGGAACGGTGTAAGGGTA+AGG | + | chr6_3:18628345-18628364 | None:intergenic | 45.0% | |
| GAACTAGGCATAGGAACTTC+AGG | + | chr6_3:18628487-18628506 | None:intergenic | 45.0% | |
| ! | CAGCATCTGTATTTTCGTGG+TGG | - | chr6_3:18628961-18628980 | Msa0943190:intron | 45.0% |
| AGGACAATTGTTGCATAGCG+TGG | - | chr6_3:18629045-18629064 | Msa0943190:CDS | 45.0% | |
| TCTCACACAGCACGCAATAC+AGG | - | chr6_3:18628647-18628666 | Msa0943190:intron | 50.0% | |
| ! | CTGTATTTTCGTGGTGGCAC+TGG | - | chr6_3:18628967-18628986 | Msa0943190:intron | 50.0% |
| !! | GTGGCACTGGCAATACTTGT+AGG | - | chr6_3:18628980-18628999 | Msa0943190:CDS | 50.0% |
| GCATAGCGTGGCAGATTTCT+AGG | - | chr6_3:18629057-18629076 | Msa0943190:CDS | 50.0% | |
| TCTCACACAGCACGCAATAC+AGG | - | chr6_3:18628647-18628666 | Msa0943190:intron | 50.0% | |
| ! | CTGTATTTTCGTGGTGGCAC+TGG | - | chr6_3:18628967-18628986 | Msa0943190:intron | 50.0% |
| !! | GTGGCACTGGCAATACTTGT+AGG | - | chr6_3:18628980-18628999 | Msa0943190:CDS | 50.0% |
| GCATAGCGTGGCAGATTTCT+AGG | - | chr6_3:18629057-18629076 | Msa0943190:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 18628039 | 18629190 | 18628039 | ID=Msa0943190;Name=Msa0943190 |
| chr6_3 | mRNA | 18628039 | 18629190 | 18628039 | ID=Msa0943190-mRNA-1;Parent=Msa0943190;Name=Msa0943190-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.33|0.25|1|1|1|4|112|229 |
| chr6_3 | exon | 18628039 | 18628278 | 18628039 | ID=Msa0943190-mRNA-1:exon:5590;Parent=Msa0943190-mRNA-1 |
| chr6_3 | exon | 18628561 | 18628662 | 18628561 | ID=Msa0943190-mRNA-1:exon:5589;Parent=Msa0943190-mRNA-1 |
| chr6_3 | exon | 18628727 | 18628973 | 18628727 | ID=Msa0943190-mRNA-1:exon:5588;Parent=Msa0943190-mRNA-1 |
| chr6_3 | exon | 18628978 | 18629190 | 18628978 | ID=Msa0943190-mRNA-1:exon:5587;Parent=Msa0943190-mRNA-1 |
| chr6_3 | CDS | 18628978 | 18629190 | 18628978 | ID=Msa0943190-mRNA-1:cds;Parent=Msa0943190-mRNA-1 |
| chr6_3 | CDS | 18628727 | 18628973 | 18628727 | ID=Msa0943190-mRNA-1:cds;Parent=Msa0943190-mRNA-1 |
| chr6_3 | CDS | 18628561 | 18628662 | 18628561 | ID=Msa0943190-mRNA-1:cds;Parent=Msa0943190-mRNA-1 |
| chr6_3 | CDS | 18628151 | 18628278 | 18628151 | ID=Msa0943190-mRNA-1:cds;Parent=Msa0943190-mRNA-1 |
| chr6_3 | three_prime_UTR | 18628039 | 18628150 | 18628039 | ID=Msa0943190-mRNA-1:three_prime_utr;Parent=Msa0943190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
