AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0090960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090960 MtrunA17_Chr1g0211081 94.798 519 21 4 1 518 6 519 0.0 1001
Msa0090960 MtrunA17_Chr8g0365711 29.038 520 256 13 5 515 4 419 7.33e-61 206
Msa0090960 MtrunA17_Chr3g0131691 34.653 202 114 1 311 512 293 476 3.62e-34 134
Msa0090960 MtrunA17_Chr7g0252041 36.139 202 106 4 315 512 285 467 8.95e-31 125
Msa0090960 MtrunA17_Chr2g0298751 34.409 186 102 5 309 491 45 213 1.43e-21 94.0
Msa0090960 MtrunA17_Chr4g0048851 33.333 171 81 3 315 485 46 183 4.82e-20 88.6
Msa0090960 MtrunA17_Chr2g0320291 30.857 175 81 4 301 472 121 258 8.17e-18 84.3
Msa0090960 MtrunA17_Chr4g0028071 30.994 171 70 5 310 468 143 277 3.52e-17 82.8
Msa0090960 MtrunA17_Chr3g0141091 28.230 209 107 4 304 511 161 327 1.59e-15 77.8
Msa0090960 MtrunA17_Chr5g0411541 29.954 217 98 8 304 511 144 315 4.20e-15 76.6
Msa0090960 MtrunA17_Chr1g0185621 28.426 197 108 6 310 497 464 636 2.37e-14 75.9
Msa0090960 MtrunA17_Chr5g0400661 29.412 187 110 7 309 494 142 307 3.57e-14 73.9
Msa0090960 MtrunA17_Chr8g0346161 29.592 196 97 7 295 482 268 430 4.16e-14 74.7
Msa0090960 MtrunA17_Chr8g0386921 31.720 186 111 6 296 474 386 562 9.42e-14 73.9
Msa0090960 MtrunA17_Chr7g0260841 42.045 88 50 1 284 371 324 410 1.46e-13 73.2
Msa0090960 MtrunA17_Chr4g0054581 25.862 174 104 4 308 480 190 339 3.98e-13 71.2
Msa0090960 MtrunA17_Chr7g0225901 28.492 179 100 5 302 480 74 224 3.99e-13 69.3
Msa0090960 MtrunA17_Chr5g0411341 28.311 219 128 7 300 510 472 669 4.38e-13 72.0
Msa0090960 MtrunA17_Chr7g0275821 55.556 54 24 0 320 373 256 309 1.38e-12 69.7
Msa0090960 MtrunA17_Chr8g0366751 30.723 166 90 5 320 481 466 610 1.92e-12 69.7
Msa0090960 MtrunA17_Chr8g0346151 40.260 77 44 1 295 369 256 332 6.27e-12 67.8
Msa0090960 MtrunA17_Chr5g0400671 33.000 100 60 1 288 380 119 218 1.11e-11 66.2
Msa0090960 MtrunA17_Chr4g0048891 37.624 101 57 2 279 373 2 102 1.55e-11 62.4
Msa0090960 MtrunA17_Chr5g0400621 42.222 90 47 3 303 392 145 229 1.85e-11 65.5
Msa0090960 MtrunA17_Chr2g0307131 28.161 174 97 5 307 480 170 315 2.41e-11 65.5
Msa0090960 MtrunA17_Chr2g0333621 26.977 215 123 6 271 480 90 275 2.53e-11 65.1
Msa0090960 MtrunA17_Chr4g0049331 49.091 55 28 0 317 371 136 190 2.76e-11 64.7
Msa0090960 MtrunA17_Chr6g0468491 29.474 190 99 8 294 480 116 273 4.14e-11 64.3
Msa0090960 MtrunA17_Chr4g0054571 36.111 72 46 0 300 371 134 205 6.02e-11 63.9
Msa0090960 MtrunA17_Chr0c01g0489461 25.248 202 136 4 317 513 197 388 6.14e-11 64.3
Msa0090960 MtrunA17_Chr3g0132471 25.322 233 135 7 304 515 96 310 7.87e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090960 AT2G16910.1 48.519 540 228 18 1 521 5 513 5.04e-148 437
Msa0090960 AT3G26744.1 34.158 202 108 3 315 512 306 486 1.45e-30 125
Msa0090960 AT3G26744.4 34.158 202 108 3 315 512 306 486 1.45e-30 125
Msa0090960 AT3G26744.2 34.158 202 108 3 315 512 306 486 1.45e-30 125
Msa0090960 AT3G26744.6 36.612 183 92 2 315 494 306 467 4.53e-30 123
Msa0090960 AT1G12860.1 35.678 199 105 3 315 512 266 442 6.68e-30 122
Msa0090960 AT1G12860.2 36.667 180 92 2 315 494 266 423 8.97e-29 119
Msa0090960 AT1G10610.1 35.404 161 88 4 2 152 8 162 8.76e-25 107
Msa0090960 AT1G10610.1 26.341 205 116 4 314 513 262 436 3.63e-16 81.3
Msa0090960 AT5G57150.1 32.367 207 115 5 298 499 32 218 4.06e-20 90.1
Msa0090960 AT5G57150.5 32.178 202 112 5 298 494 32 213 7.04e-20 89.0
Msa0090960 AT5G57150.2 32.178 202 112 5 298 494 33 214 1.04e-19 88.6
Msa0090960 AT5G57150.3 32.178 202 112 5 298 494 33 214 1.05e-19 88.2
Msa0090960 AT5G57150.4 32.178 202 112 5 298 494 33 214 1.56e-19 89.0
Msa0090960 AT4G21330.1 27.094 203 121 4 314 516 30 205 5.33e-17 80.1
Msa0090960 AT2G28160.2 29.878 164 89 4 308 471 123 260 8.53e-17 81.6
Msa0090960 AT2G28160.1 29.878 164 89 4 308 471 123 260 9.21e-17 81.6
Msa0090960 AT1G10610.2 32.836 134 75 3 28 152 5 132 1.12e-16 82.8
Msa0090960 AT1G10610.2 26.341 205 116 4 314 513 232 406 3.64e-16 81.3
Msa0090960 AT1G63650.3 28.571 196 122 4 319 510 408 589 1.32e-16 83.2
Msa0090960 AT1G63650.1 28.571 196 122 4 319 510 408 589 1.32e-16 83.2
Msa0090960 AT1G63650.2 28.571 196 122 4 319 510 408 589 1.32e-16 83.2
Msa0090960 AT5G46760.1 31.481 162 87 4 320 481 419 556 2.35e-16 82.4
Msa0090960 AT1G10610.3 25.110 227 135 4 292 513 143 339 3.25e-16 80.5
Msa0090960 AT2G46510.1 44.086 93 47 1 301 388 375 467 9.23e-16 80.5
Msa0090960 AT4G29930.1 28.643 199 119 5 315 504 53 237 1.14e-15 77.4
Msa0090960 AT5G65640.1 28.767 219 122 5 304 521 166 351 4.95e-15 77.0
Msa0090960 AT5G65640.2 57.746 71 30 0 304 374 166 236 6.48e-15 75.9
Msa0090960 AT4G17880.1 29.412 187 99 5 300 481 395 553 8.34e-15 77.8
Msa0090960 AT5G10570.1 29.858 211 100 7 306 511 138 305 9.42e-15 75.9
Msa0090960 AT4G29930.3 28.261 184 111 4 315 491 53 222 1.91e-14 73.9
Msa0090960 AT4G29930.7 28.261 184 111 4 315 491 53 222 1.91e-14 73.9
Msa0090960 AT4G37850.2 26.842 190 112 4 311 500 147 309 3.65e-14 74.3
Msa0090960 AT4G37850.1 26.842 190 112 4 311 500 147 309 3.65e-14 74.3
Msa0090960 AT4G29930.4 55.000 60 27 0 315 374 53 112 4.92e-14 70.9
Msa0090960 AT4G29930.2 55.000 60 27 0 315 374 53 112 5.53e-14 72.0
Msa0090960 AT4G29930.5 55.000 60 27 0 315 374 53 112 6.01e-14 72.0
Msa0090960 AT4G29930.6 55.000 60 27 0 315 374 53 112 6.16e-14 71.6
Msa0090960 AT5G41315.3 27.619 210 130 7 308 510 441 635 8.21e-14 74.7
Msa0090960 AT5G41315.2 27.638 199 125 6 319 510 452 638 8.24e-14 74.7
Msa0090960 AT5G41315.1 27.619 210 130 7 308 510 436 630 8.98e-14 74.3
Msa0090960 AT4G09820.1 26.316 190 90 3 317 504 364 505 6.97e-13 71.2
Msa0090960 AT3G24140.1 26.794 209 126 6 317 513 199 392 1.40e-12 70.1
Msa0090960 AT3G24140.2 26.794 209 126 6 317 513 199 392 1.61e-12 69.7
Msa0090960 AT1G01260.1 42.045 88 49 2 287 373 404 490 2.13e-12 70.1
Msa0090960 AT1G01260.2 42.045 88 49 2 287 373 404 490 2.13e-12 70.1
Msa0090960 AT1G01260.3 42.045 88 49 2 287 373 404 490 2.13e-12 70.1
Msa0090960 AT4G16430.1 43.421 76 38 1 301 371 300 375 6.25e-12 68.2
Msa0090960 AT1G32640.1 51.923 52 25 0 320 371 456 507 4.79e-11 65.9
Msa0090960 AT4G00870.1 40.323 62 37 0 320 381 253 314 7.69e-11 64.7
Msa0090960 AT2G22750.3 26.316 171 103 3 310 480 148 295 7.78e-11 63.9
Msa0090960 AT2G22750.4 26.316 171 103 3 310 480 148 295 8.16e-11 63.9
Msa0090960 AT2G22750.5 26.316 171 103 3 310 480 144 291 8.52e-11 63.9

Find 105 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTATTGTTATTATTATT+TGG 0.140145 1_2:+73088752 None:intergenic
CTATCAAGCTTTGAGATTCT+TGG 0.205780 1_2:+73088914 None:intergenic
CTCTTGTTGGTTTGAATGGC+TGG 0.239275 1_2:-73090789 Msa0090960:CDS
TGAAATCCATGTTCTGCTTT+TGG 0.239465 1_2:+73088728 None:intergenic
CTTGATAGAGCATCTATTCT+TGG 0.248227 1_2:-73088899 Msa0090960:CDS
CAGCAACAAGGTTCTTTGAT+TGG 0.308174 1_2:+73088993 None:intergenic
GTGGAAGTGGCTCAGATAGA+TGG 0.338551 1_2:-73088485 Msa0090960:CDS
GTTATATAACCTTCGTTCAT+TGG 0.349149 1_2:-73088939 Msa0090960:CDS
AGATCACAAGAGTTTGTTCT+TGG 0.351468 1_2:+73090503 None:intergenic
GGTGTTCTTCTCCACCATTT+TGG 0.356060 1_2:+73090567 None:intergenic
GAACTTACATGTAAAGTGTT+TGG 0.359394 1_2:+73090279 None:intergenic
GAAGGAAGAAACTGAATGAT+AGG 0.368436 1_2:-73088961 Msa0090960:CDS
CAAATCTTCATGCTGGAACT+TGG 0.371640 1_2:-73088121 Msa0090960:CDS
AGACCTCTTGTTGGTTTGAA+TGG 0.376737 1_2:-73090793 Msa0090960:CDS
GTGTTTGGATCCAAGCTATT+GGG 0.381111 1_2:+73090294 None:intergenic
TAGGTATGGAAGTGGAAAGT+TGG 0.382059 1_2:+73090474 None:intergenic
ATTGGGATAGTTCAACCAAT+TGG 0.386734 1_2:+73090311 None:intergenic
GATTCCAGTGCCTGGTGGAC+TGG 0.406904 1_2:-73090118 Msa0090960:CDS
CAGAACATGGATTTCATGTT+GGG 0.411727 1_2:-73088721 Msa0090960:CDS
TATATATACCCTGAATCTAT+AGG 0.413784 1_2:+73090455 None:intergenic
TGAGCTCTTTGTAACTAAAC+AGG 0.419409 1_2:-73090094 Msa0090960:intron
GGTTGGGATGTTGTTGTGGT+GGG 0.420257 1_2:-73090601 Msa0090960:CDS
AAGAGGATGATGGAAAATAT+AGG 0.425274 1_2:-73089036 Msa0090960:CDS
AGTGTTTGGATCCAAGCTAT+TGG 0.426318 1_2:+73090293 None:intergenic
ACTTCCATACCTATAGATTC+AGG 0.426419 1_2:-73090464 Msa0090960:CDS
TTTCCCTGTCTCTTCATGTA+GGG 0.439137 1_2:-73090543 Msa0090960:CDS
TTGGGATAGTTCAACCAATT+GGG 0.440118 1_2:+73090312 None:intergenic
TATTAACTAACCAACCCAAT+TGG 0.442270 1_2:-73090326 Msa0090960:CDS
TATAGGAGAAGAAGTGGAAA+AGG 0.445604 1_2:-73089019 Msa0090960:CDS
AGGTATGGAAGTGGAAAGTT+GGG 0.445933 1_2:+73090475 None:intergenic
GAAGGGATGAACCACTCAAT+TGG 0.446434 1_2:-73089457 Msa0090960:CDS
GAGAGATTAAGACCTCTTGT+TGG 0.450531 1_2:-73090802 Msa0090960:CDS
ATGGAGGCTTTGAACACTTT+AGG 0.460171 1_2:-73088404 Msa0090960:CDS
TTATATATAGGTATCTTGAA+TGG 0.460510 1_2:-73090622 Msa0090960:intron
AGTAACTGTGTATATGTTGA+TGG 0.466614 1_2:-73088788 Msa0090960:CDS
TGGTTGGGATGTTGTTGTGG+TGG 0.468844 1_2:-73090602 Msa0090960:CDS
ATATAGGTATCTTGAATGGT+TGG 0.468983 1_2:-73090618 Msa0090960:intron
GCAGAACATGGATTTCATGT+TGG 0.469960 1_2:-73088722 Msa0090960:CDS
GGAAAATATAGGAGAAGAAG+TGG 0.472548 1_2:-73089025 Msa0090960:CDS
GATCACAAGAGTTTGTTCTT+GGG 0.473126 1_2:+73090504 None:intergenic
TCTTGTTGGTTTGAATGGCT+GGG 0.473478 1_2:-73090788 Msa0090960:CDS
GATTCAATGTCTCTGATGAA+TGG 0.473958 1_2:+73089356 None:intergenic
AAGAAGCAAGAACATGTTGT+TGG 0.475916 1_2:-73089100 Msa0090960:CDS
GCTGGGATTACTGTGTCTAC+TGG 0.476054 1_2:-73090771 Msa0090960:CDS
GGCTTTGAACACTTTAGGCA+TGG 0.486692 1_2:-73088399 Msa0090960:CDS
ATGAATATTGCAGGCACAAG+TGG 0.489997 1_2:-73088504 Msa0090960:intron
TATAGGTATCTTGAATGGTT+GGG 0.493698 1_2:-73090617 Msa0090960:intron
TAATAATCAATATATGTTTG+TGG 0.498103 1_2:-73089140 Msa0090960:CDS
GTTGAACTATCCCAATAGCT+TGG 0.501147 1_2:-73090304 Msa0090960:CDS
CAGAATGAAGAAGAGGATGA+TGG 0.501916 1_2:-73089046 Msa0090960:CDS
ATTGAACAGGATTCATGCAC+AGG 0.504490 1_2:-73090352 Msa0090960:intron
TTCTCTTCCTCTCAGCAACA+AGG 0.506548 1_2:+73088981 None:intergenic
GAATGGTTGGGATGTTGTTG+TGG 0.510919 1_2:-73090605 Msa0090960:CDS
GTATCCCTACATGAAGAGAC+AGG 0.511754 1_2:+73090539 None:intergenic
ATACCCTGAATCTATAGGTA+TGG 0.513797 1_2:+73090460 None:intergenic
GGGAGTGAAAGCAACCAAAA+TGG 0.520448 1_2:-73090581 Msa0090960:CDS
TGGAAGTGGCTCAGATAGAT+GGG 0.522256 1_2:-73088484 Msa0090960:CDS
TGAGACAAGACCCTTGTGAC+TGG 0.522381 1_2:+73088355 None:intergenic
CATGGATTTCATGTTGGGAA+TGG 0.525371 1_2:-73088716 Msa0090960:CDS
ATTGCAGGCACAAGTGGAAG+TGG 0.525672 1_2:-73088498 Msa0090960:intron
TGAATCTATAGGTATGGAAG+TGG 0.528440 1_2:+73090466 None:intergenic
CACGGAACAAATCTTCATGC+TGG 0.531543 1_2:-73088128 Msa0090960:CDS
CTTCCATACCTATAGATTCA+GGG 0.537250 1_2:-73090463 Msa0090960:intron
ATGCAATCGAATCCAATTGT+GGG 0.539218 1_2:-73089415 Msa0090960:CDS
ACCTTGGTATTCTTCAGAGA+AGG 0.541843 1_2:+73089246 None:intergenic
CTATGTTTCAAAACAAAAGC+AGG 0.545019 1_2:-73088693 Msa0090960:CDS
GGAAATTAAGTGAAGATCAA+AGG 0.546606 1_2:-73090750 Msa0090960:intron
CATGCAATCGAATCCAATTG+TGG 0.546804 1_2:-73089416 Msa0090960:CDS
GATAGTTCAACCAATTGGGT+TGG 0.554141 1_2:+73090316 None:intergenic
TACATGAAGAGACAGGGAAA+AGG 0.554895 1_2:+73090546 None:intergenic
TTGAATTGAAACCAATTGAG+TGG 0.557955 1_2:+73089446 None:intergenic
CAGGCACTGGAATCAAAACA+TGG 0.559119 1_2:+73090127 None:intergenic
CAGTGATCAGAATGAAGAAG+AGG 0.559858 1_2:-73089053 Msa0090960:CDS
TTGTTGCTGAGAGGAAGAGA+AGG 0.562094 1_2:-73088979 Msa0090960:CDS
AAGAGCTCAACCAGTCCACC+AGG 0.565516 1_2:+73090108 None:intergenic
ATCAATTTCACAAAACCACC+TGG 0.575508 1_2:+73088425 None:intergenic
TCAACCAGTCCACCAGGCAC+TGG 0.579883 1_2:+73090114 None:intergenic
GATCCTGAAGAAAAGAACCT+TGG 0.582504 1_2:+73089230 None:intergenic
AAACAAAAGCAGGAAGATGT+TGG 0.583119 1_2:-73088683 Msa0090960:CDS
ATCTCAATGCATTGTCATGG+TGG 0.583356 1_2:-73089485 Msa0090960:CDS
TGACAAGCAGACACAGCAGA+TGG 0.586592 1_2:-73088651 Msa0090960:CDS
AAAGGAGAGTGAAATAGTTG+AGG 0.586665 1_2:-73088184 Msa0090960:CDS
CACATCTCAATGCATTGTCA+TGG 0.588350 1_2:-73089488 Msa0090960:CDS
TTCAATACAGATATGTCATG+TGG 0.598259 1_2:+73089331 None:intergenic
AATGTTCCAAAAGCAGAACA+TGG 0.599725 1_2:-73088734 Msa0090960:CDS
AGAGCTTCAAGATGAACTTG+AGG 0.601650 1_2:-73088834 Msa0090960:CDS
TCTCAAATCACACACAGAAG+AGG 0.606938 1_2:-73089191 Msa0090960:CDS
ATTGTCATGGTGGATCAAGA+AGG 0.607678 1_2:-73089475 Msa0090960:CDS
CAAAGAACCTTGTTGCTGAG+AGG 0.619036 1_2:-73088988 Msa0090960:CDS
CTTGAGGAAAATTCAGACAC+AGG 0.625559 1_2:-73088818 Msa0090960:CDS
TGCCACAGTAACCAGTCACA+AGG 0.625627 1_2:-73088366 Msa0090960:CDS
AGATGCTATTGAATTTGTGA+AGG 0.628469 1_2:-73088876 Msa0090960:CDS
CAGCCATTCAAACCAACAAG+AGG 0.632565 1_2:+73090790 None:intergenic
ATTGTGGGTGATGAAAATGA+TGG 0.641485 1_2:-73089400 Msa0090960:CDS
AGTGAAAGCAACCAAAATGG+TGG 0.646392 1_2:-73090578 Msa0090960:CDS
ATTCACTACTAGAGCTGACA+CGG 0.647595 1_2:-73088146 Msa0090960:CDS
TTCTTGGAACCAATGAACGA+AGG 0.654816 1_2:+73088930 None:intergenic
ACCCTTGTGACTGGTTACTG+TGG 0.657104 1_2:+73088364 None:intergenic
TTGTCATGGTGGATCAAGAA+GGG 0.669108 1_2:-73089474 Msa0090960:CDS
TGGGAATGAGTACTTTGTGA+AGG 0.678653 1_2:-73088465 Msa0090960:CDS
CAAGCAGACACAGCAGATGG+AGG 0.682677 1_2:-73088648 Msa0090960:intron
TATCCCTACATGAAGAGACA+GGG 0.687876 1_2:+73090540 None:intergenic
ACCTTCTCTGAAGAATACCA+AGG 0.692673 1_2:-73089247 Msa0090960:CDS
GCCACAGTAACCAGTCACAA+GGG 0.696830 1_2:-73088365 Msa0090960:CDS
AGGCACTGGAATCAAAACAT+GGG 0.706180 1_2:+73090128 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATAGAACAAAAAATA+TGG + chr1_2:73088240-73088259 None:intergenic 10.0%
!!! TAAATTTTAAATTAAGCTAA+GGG + chr1_2:73088933-73088952 None:intergenic 10.0%
!!! TTAAATTTTAAATTAAGCTA+AGG + chr1_2:73088934-73088953 None:intergenic 10.0%
!! AGTTATTAGTATATTTATTT+AGG + chr1_2:73089368-73089387 None:intergenic 10.0%
!!! ACATTATTGTTATTATTATT+TGG + chr1_2:73090181-73090200 None:intergenic 10.0%
!!! TGATATTAATTTTTTTTTCT+TGG - chr1_2:73090696-73090715 Msa0090960:intron 10.0%
!!! GATATTAATTTTTTTTTCTT+GGG - chr1_2:73090697-73090716 Msa0090960:intron 10.0%
!!! ATTTGTTGGTTTTTATATAT+AGG - chr1_2:73088296-73088315 Msa0090960:intron 15.0%
!! ACTCAATATATCAATATATA+TGG + chr1_2:73088753-73088772 None:intergenic 15.0%
!!! ACTTTTTTGAATTATTATCA+AGG - chr1_2:73089206-73089225 Msa0090960:CDS 15.0%
!! CATAATAAAAATATGAAGTT+CGG - chr1_2:73089239-73089258 Msa0090960:CDS 15.0%
!! TAATAATCAATATATGTTTG+TGG - chr1_2:73089790-73089809 Msa0090960:intron 15.0%
!!! TATAAATTTTAGTATAAGCT+AGG + chr1_2:73090318-73090337 None:intergenic 15.0%
!! AATTTATACACTAATAACAA+AGG - chr1_2:73090330-73090349 Msa0090960:CDS 15.0%
!! AAGTTAAGAAATTTATTGTA+CGG + chr1_2:73090626-73090645 None:intergenic 15.0%
!! ATATAATTATGAACAGAAAA+AGG - chr1_2:73090728-73090747 Msa0090960:intron 15.0%
!!! TAATTGTGATGTTAATTTGT+TGG - chr1_2:73088282-73088301 Msa0090960:intron 20.0%
!! TTATATATAGGTATCTTGAA+TGG - chr1_2:73088308-73088327 Msa0090960:intron 20.0%
!! AGATGAATTAGTTGAAAAAT+AGG + chr1_2:73088692-73088711 None:intergenic 20.0%
!!! TTTTTCAACTAATTCATCTT+TGG - chr1_2:73088693-73088712 Msa0090960:CDS 20.0%
!! TATAAGTAGGTAGATATAAA+TGG - chr1_2:73088896-73088915 Msa0090960:CDS 20.0%
!! TCATTGAATGATATACTATA+AGG - chr1_2:73089048-73089067 Msa0090960:CDS 20.0%
!!! TAAGATCATGTTAATTTTGA+TGG - chr1_2:73089147-73089166 Msa0090960:CDS 20.0%
!!! TGAATTATTATCAAGGTTTT+TGG - chr1_2:73089213-73089232 Msa0090960:CDS 20.0%
!! AGACAAATTCAAATCAAAAT+AGG - chr1_2:73090662-73090681 Msa0090960:intron 20.0%
! TATATATACCCTGAATCTAT+AGG + chr1_2:73088478-73088497 None:intergenic 25.0%
! AGGATTATAGATAGAGTAAA+GGG + chr1_2:73088547-73088566 None:intergenic 25.0%
! AAGGATTATAGATAGAGTAA+AGG + chr1_2:73088548-73088567 None:intergenic 25.0%
! TATATGGAATTAGCTGAAAA+AGG + chr1_2:73088737-73088756 None:intergenic 25.0%
!!! ATATTGAGTACTATTTTTGC+AGG - chr1_2:73088764-73088783 Msa0090960:CDS 25.0%
!! TTTTTGCAGGAAACAATTAA+TGG - chr1_2:73088777-73088796 Msa0090960:CDS 25.0%
!! TTTTGCAGGAAACAATTAAT+GGG - chr1_2:73088778-73088797 Msa0090960:CDS 25.0%
! TTAGAAACACACATATAAGT+AGG - chr1_2:73088883-73088902 Msa0090960:CDS 25.0%
! GCTTAATTTACATATTGAAC+TGG - chr1_2:73088988-73089007 Msa0090960:CDS 25.0%
! TTCTCTGTGTATAATATAAC+AGG - chr1_2:73089388-73089407 Msa0090960:CDS 25.0%
!!! CTCAAATGTTTTTAAAGTTG+AGG - chr1_2:73090594-73090613 Msa0090960:CDS 25.0%
GGAAATTAAGTGAAGATCAA+AGG - chr1_2:73088180-73088199 Msa0090960:CDS 30.0%
ATATAGGTATCTTGAATGGT+TGG - chr1_2:73088312-73088331 Msa0090960:intron 30.0%
TATAGGTATCTTGAATGGTT+GGG - chr1_2:73088313-73088332 Msa0090960:intron 30.0%
TTATAGATAGAGTAAAGGGA+GGG + chr1_2:73088543-73088562 None:intergenic 30.0%
ATTATAGATAGAGTAAAGGG+AGG + chr1_2:73088544-73088563 None:intergenic 30.0%
CTGTTCAATGAAGAGATTAA+AGG + chr1_2:73088567-73088586 None:intergenic 30.0%
CTTTAATCTCTTCATTGAAC+AGG - chr1_2:73088565-73088584 Msa0090960:intron 30.0%
TATTAACTAACCAACCCAAT+TGG - chr1_2:73088604-73088623 Msa0090960:intron 30.0%
! GAACTTACATGTAAAGTGTT+TGG + chr1_2:73088654-73088673 None:intergenic 30.0%
CACTTTACATGTAAGTTCAT+TGG - chr1_2:73088656-73088675 Msa0090960:CDS 30.0%
GGTCTAATTATGATGTTGAA+GGG + chr1_2:73089083-73089102 None:intergenic 30.0%
TGATCTTGATGTTGTTAACT+GGG + chr1_2:73089106-73089125 None:intergenic 30.0%
!! TATAAAAGCGTCAAAGATGT+TGG + chr1_2:73089266-73089285 None:intergenic 30.0%
CTGTGTATAATATAACAGGT+TGG - chr1_2:73089392-73089411 Msa0090960:CDS 30.0%
TTGAATTGAAACCAATTGAG+TGG + chr1_2:73089487-73089506 None:intergenic 30.0%
TTCAATACAGATATGTCATG+TGG + chr1_2:73089602-73089621 None:intergenic 30.0%
!!! GCTTCTTTTTTGTGTCTAAT+GGG + chr1_2:73089817-73089836 None:intergenic 30.0%
!!! TGCTTCTTTTTTGTGTCTAA+TGG + chr1_2:73089818-73089837 None:intergenic 30.0%
!! AAGAGGATGATGGAAAATAT+AGG - chr1_2:73089894-73089913 Msa0090960:intron 30.0%
GTTATATAACCTTCGTTCAT+TGG - chr1_2:73089991-73090010 Msa0090960:intron 30.0%
AGATGCTATTGAATTTGTGA+AGG - chr1_2:73090054-73090073 Msa0090960:intron 30.0%
AGTAACTGTGTATATGTTGA+TGG - chr1_2:73090142-73090161 Msa0090960:CDS 30.0%
CTATGTTTCAAAACAAAAGC+AGG - chr1_2:73090237-73090256 Msa0090960:intron 30.0%
CACATGAATATGAATATTGC+AGG - chr1_2:73090417-73090436 Msa0090960:intron 30.0%
! GATCACAAGAGTTTGTTCTT+GGG + chr1_2:73088429-73088448 None:intergenic 35.0%
! AGATCACAAGAGTTTGTTCT+TGG + chr1_2:73088430-73088449 None:intergenic 35.0%
TGAATCTATAGGTATGGAAG+TGG + chr1_2:73088467-73088486 None:intergenic 35.0%
ACTTCCATACCTATAGATTC+AGG - chr1_2:73088466-73088485 Msa0090960:CDS 35.0%
CTTCCATACCTATAGATTCA+GGG - chr1_2:73088467-73088486 Msa0090960:CDS 35.0%
ATACCCTGAATCTATAGGTA+TGG + chr1_2:73088473-73088492 None:intergenic 35.0%
TTGGGATAGTTCAACCAATT+GGG + chr1_2:73088621-73088640 None:intergenic 35.0%
ATTGGGATAGTTCAACCAAT+TGG + chr1_2:73088622-73088641 None:intergenic 35.0%
TGAGCTCTTTGTAACTAAAC+AGG - chr1_2:73088836-73088855 Msa0090960:CDS 35.0%
GGGTCTAATTATGATGTTGA+AGG + chr1_2:73089084-73089103 None:intergenic 35.0%
ATCTTGATGTTGTTAACTGG+GGG + chr1_2:73089104-73089123 None:intergenic 35.0%
GATCTTGATGTTGTTAACTG+GGG + chr1_2:73089105-73089124 None:intergenic 35.0%
GTGATCTTGATGTTGTTAAC+TGG + chr1_2:73089107-73089126 None:intergenic 35.0%
TTTAGGCAAAACTGCATCAA+AGG + chr1_2:73089351-73089370 None:intergenic 35.0%
ATGCAATCGAATCCAATTGT+GGG - chr1_2:73089515-73089534 Msa0090960:CDS 35.0%
! TCATTTTCATCACCCACAAT+TGG + chr1_2:73089530-73089549 None:intergenic 35.0%
ATTGTGGGTGATGAAAATGA+TGG - chr1_2:73089530-73089549 Msa0090960:intron 35.0%
GATTCAATGTCTCTGATGAA+TGG + chr1_2:73089577-73089596 None:intergenic 35.0%
! ATACCAAGGTTCTTTTCTTC+AGG - chr1_2:73089697-73089716 Msa0090960:intron 35.0%
AAGAAGCAAGAACATGTTGT+TGG - chr1_2:73089830-73089849 Msa0090960:intron 35.0%
GGAAAATATAGGAGAAGAAG+TGG - chr1_2:73089905-73089924 Msa0090960:intron 35.0%
TATAGGAGAAGAAGTGGAAA+AGG - chr1_2:73089911-73089930 Msa0090960:intron 35.0%
GAAGGAAGAAACTGAATGAT+AGG - chr1_2:73089969-73089988 Msa0090960:intron 35.0%
!! CTATCAAGCTTTGAGATTCT+TGG + chr1_2:73090019-73090038 None:intergenic 35.0%
! CTTGATAGAGCATCTATTCT+TGG - chr1_2:73090031-73090050 Msa0090960:intron 35.0%
AATGTTCCAAAAGCAGAACA+TGG - chr1_2:73090196-73090215 Msa0090960:intron 35.0%
! TGAAATCCATGTTCTGCTTT+TGG + chr1_2:73090205-73090224 None:intergenic 35.0%
CAGAACATGGATTTCATGTT+GGG - chr1_2:73090209-73090228 Msa0090960:intron 35.0%
AAACAAAAGCAGGAAGATGT+TGG - chr1_2:73090247-73090266 Msa0090960:intron 35.0%
ATCAATTTCACAAAACCACC+TGG + chr1_2:73090508-73090527 None:intergenic 35.0%
!!! AGGTGGTTTTGTGAAATTGA+TGG - chr1_2:73090507-73090526 Msa0090960:CDS 35.0%
!!! TGGTTTTGTGAAATTGATGG+AGG - chr1_2:73090510-73090529 Msa0090960:CDS 35.0%
AAAGGAGAGTGAAATAGTTG+AGG - chr1_2:73090746-73090765 Msa0090960:intron 35.0%
GAGAGATTAAGACCTCTTGT+TGG - chr1_2:73088128-73088147 Msa0090960:CDS 40.0%
!! AGACCTCTTGTTGGTTTGAA+TGG - chr1_2:73088137-73088156 Msa0090960:CDS 40.0%
!! TCTTGTTGGTTTGAATGGCT+GGG - chr1_2:73088142-73088161 Msa0090960:CDS 40.0%
AGTGAAAGCAACCAAAATGG+TGG - chr1_2:73088352-73088371 Msa0090960:CDS 40.0%
TACATGAAGAGACAGGGAAA+AGG + chr1_2:73088387-73088406 None:intergenic 40.0%
! TTTTCCCTGTCTCTTCATGT+AGG - chr1_2:73088386-73088405 Msa0090960:CDS 40.0%
TTTCCCTGTCTCTTCATGTA+GGG - chr1_2:73088387-73088406 Msa0090960:CDS 40.0%
TATCCCTACATGAAGAGACA+GGG + chr1_2:73088393-73088412 None:intergenic 40.0%
AGGTATGGAAGTGGAAAGTT+GGG + chr1_2:73088458-73088477 None:intergenic 40.0%
TAGGTATGGAAGTGGAAAGT+TGG + chr1_2:73088459-73088478 None:intergenic 40.0%
ATTGAACAGGATTCATGCAC+AGG - chr1_2:73088578-73088597 Msa0090960:intron 40.0%
GATAGTTCAACCAATTGGGT+TGG + chr1_2:73088617-73088636 None:intergenic 40.0%
GTTGAACTATCCCAATAGCT+TGG - chr1_2:73088626-73088645 Msa0090960:intron 40.0%
GTGTTTGGATCCAAGCTATT+GGG + chr1_2:73088639-73088658 None:intergenic 40.0%
AGTGTTTGGATCCAAGCTAT+TGG + chr1_2:73088640-73088659 None:intergenic 40.0%
!! AGGCACTGGAATCAAAACAT+GGG + chr1_2:73088805-73088824 None:intergenic 40.0%
CACATCTCAATGCATTGTCA+TGG - chr1_2:73089442-73089461 Msa0090960:CDS 40.0%
ATCTCAATGCATTGTCATGG+TGG - chr1_2:73089445-73089464 Msa0090960:CDS 40.0%
!! ATTGTCATGGTGGATCAAGA+AGG - chr1_2:73089455-73089474 Msa0090960:CDS 40.0%
!! TTGTCATGGTGGATCAAGAA+GGG - chr1_2:73089456-73089475 Msa0090960:CDS 40.0%
CATGCAATCGAATCCAATTG+TGG - chr1_2:73089514-73089533 Msa0090960:CDS 40.0%
! ACCTTCTCTGAAGAATACCA+AGG - chr1_2:73089683-73089702 Msa0090960:intron 40.0%
ACCTTGGTATTCTTCAGAGA+AGG + chr1_2:73089687-73089706 None:intergenic 40.0%
GATCCTGAAGAAAAGAACCT+TGG + chr1_2:73089703-73089722 None:intergenic 40.0%
TCTCAAATCACACACAGAAG+AGG - chr1_2:73089739-73089758 Msa0090960:intron 40.0%
CAGTGATCAGAATGAAGAAG+AGG - chr1_2:73089877-73089896 Msa0090960:intron 40.0%
CAGAATGAAGAAGAGGATGA+TGG - chr1_2:73089884-73089903 Msa0090960:intron 40.0%
CAGCAACAAGGTTCTTTGAT+TGG + chr1_2:73089940-73089959 None:intergenic 40.0%
TTCTTGGAACCAATGAACGA+AGG + chr1_2:73090003-73090022 None:intergenic 40.0%
AGAGCTTCAAGATGAACTTG+AGG - chr1_2:73090096-73090115 Msa0090960:CDS 40.0%
CTTGAGGAAAATTCAGACAC+AGG - chr1_2:73090112-73090131 Msa0090960:CDS 40.0%
GCAGAACATGGATTTCATGT+TGG - chr1_2:73090208-73090227 Msa0090960:intron 40.0%
CATGGATTTCATGTTGGGAA+TGG - chr1_2:73090214-73090233 Msa0090960:intron 40.0%
ATGAATATTGCAGGCACAAG+TGG - chr1_2:73090426-73090445 Msa0090960:intron 40.0%
TGGGAATGAGTACTTTGTGA+AGG - chr1_2:73090465-73090484 Msa0090960:CDS 40.0%
!! ATGGAGGCTTTGAACACTTT+AGG - chr1_2:73090526-73090545 Msa0090960:CDS 40.0%
ATTCACTACTAGAGCTGACA+CGG - chr1_2:73090784-73090803 Msa0090960:CDS 40.0%
CAAATCTTCATGCTGGAACT+TGG - chr1_2:73090809-73090828 Msa0090960:CDS 40.0%
CAGCCATTCAAACCAACAAG+AGG + chr1_2:73088143-73088162 None:intergenic 45.0%
!! CTCTTGTTGGTTTGAATGGC+TGG - chr1_2:73088141-73088160 Msa0090960:CDS 45.0%
GAATGGTTGGGATGTTGTTG+TGG - chr1_2:73088325-73088344 Msa0090960:intron 45.0%
GGGAGTGAAAGCAACCAAAA+TGG - chr1_2:73088349-73088368 Msa0090960:CDS 45.0%
! GGTGTTCTTCTCCACCATTT+TGG + chr1_2:73088366-73088385 None:intergenic 45.0%
GTATCCCTACATGAAGAGAC+AGG + chr1_2:73088394-73088413 None:intergenic 45.0%
!! CAGGCACTGGAATCAAAACA+TGG + chr1_2:73088806-73088825 None:intergenic 45.0%
!!! CATGTTTTGATTCCAGTGCC+TGG - chr1_2:73088804-73088823 Msa0090960:CDS 45.0%
GAAGGGATGAACCACTCAAT+TGG - chr1_2:73089473-73089492 Msa0090960:CDS 45.0%
CAAAGAACCTTGTTGCTGAG+AGG - chr1_2:73089942-73089961 Msa0090960:intron 45.0%
TTCTCTTCCTCTCAGCAACA+AGG + chr1_2:73089952-73089971 None:intergenic 45.0%
TTGTTGCTGAGAGGAAGAGA+AGG - chr1_2:73089951-73089970 Msa0090960:intron 45.0%
TGGAAGTGGCTCAGATAGAT+GGG - chr1_2:73090446-73090465 Msa0090960:intron 45.0%
!!! TGAAGGTGTTTTGTGAGCAC+AGG - chr1_2:73090482-73090501 Msa0090960:CDS 45.0%
!! GGCTTTGAACACTTTAGGCA+TGG - chr1_2:73090531-73090550 Msa0090960:CDS 45.0%
CACGGAACAAATCTTCATGC+TGG - chr1_2:73090802-73090821 Msa0090960:CDS 45.0%
GCTGGGATTACTGTGTCTAC+TGG - chr1_2:73088159-73088178 Msa0090960:CDS 50.0%
TGGTTGGGATGTTGTTGTGG+TGG - chr1_2:73088328-73088347 Msa0090960:intron 50.0%
GGTTGGGATGTTGTTGTGGT+GGG - chr1_2:73088329-73088348 Msa0090960:intron 50.0%
!!! GTTTTGATTCCAGTGCCTGG+TGG - chr1_2:73088807-73088826 Msa0090960:CDS 50.0%
TGACAAGCAGACACAGCAGA+TGG - chr1_2:73090279-73090298 Msa0090960:intron 50.0%
ATTGCAGGCACAAGTGGAAG+TGG - chr1_2:73090432-73090451 Msa0090960:intron 50.0%
GTGGAAGTGGCTCAGATAGA+TGG - chr1_2:73090445-73090464 Msa0090960:intron 50.0%
TGCCACAGTAACCAGTCACA+AGG - chr1_2:73090564-73090583 Msa0090960:CDS 50.0%
GCCACAGTAACCAGTCACAA+GGG - chr1_2:73090565-73090584 Msa0090960:CDS 50.0%
! ACCCTTGTGACTGGTTACTG+TGG + chr1_2:73090569-73090588 None:intergenic 50.0%
TGAGACAAGACCCTTGTGAC+TGG + chr1_2:73090578-73090597 None:intergenic 50.0%
AAGAGCTCAACCAGTCCACC+AGG + chr1_2:73088825-73088844 None:intergenic 55.0%
CAAGCAGACACAGCAGATGG+AGG - chr1_2:73090282-73090301 Msa0090960:intron 55.0%
! GTGTTTTGTGAGCACAGGCC+AGG - chr1_2:73090487-73090506 Msa0090960:CDS 55.0%
! TTTTGTGAGCACAGGCCAGG+TGG - chr1_2:73090490-73090509 Msa0090960:CDS 55.0%
! GATTCCAGTGCCTGGTGGAC+TGG - chr1_2:73088812-73088831 Msa0090960:CDS 60.0%
TCAACCAGTCCACCAGGCAC+TGG + chr1_2:73088819-73088838 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 73088113 73090839 73088113 ID=Msa0090960;Name=Msa0090960
chr1_2 mRNA 73088113 73090839 73088113 ID=Msa0090960-mRNA-1;Parent=Msa0090960;Name=Msa0090960-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|7|0|525
chr1_2 exon 73090751 73090839 73090751 ID=Msa0090960-mRNA-1:exon:25495;Parent=Msa0090960-mRNA-1
chr1_2 exon 73090464 73090634 73090464 ID=Msa0090960-mRNA-1:exon:25494;Parent=Msa0090960-mRNA-1
chr1_2 exon 73090287 73090365 73090287 ID=Msa0090960-mRNA-1:exon:25493;Parent=Msa0090960-mRNA-1
chr1_2 exon 73090095 73090166 73090095 ID=Msa0090960-mRNA-1:exon:25492;Parent=Msa0090960-mRNA-1
chr1_2 exon 73088649 73089542 73088649 ID=Msa0090960-mRNA-1:exon:25491;Parent=Msa0090960-mRNA-1
chr1_2 exon 73088337 73088513 73088337 ID=Msa0090960-mRNA-1:exon:25490;Parent=Msa0090960-mRNA-1
chr1_2 exon 73088113 73088208 73088113 ID=Msa0090960-mRNA-1:exon:25489;Parent=Msa0090960-mRNA-1
chr1_2 CDS 73090751 73090839 73090751 ID=Msa0090960-mRNA-1:cds;Parent=Msa0090960-mRNA-1
chr1_2 CDS 73090464 73090634 73090464 ID=Msa0090960-mRNA-1:cds;Parent=Msa0090960-mRNA-1
chr1_2 CDS 73090287 73090365 73090287 ID=Msa0090960-mRNA-1:cds;Parent=Msa0090960-mRNA-1
chr1_2 CDS 73090095 73090166 73090095 ID=Msa0090960-mRNA-1:cds;Parent=Msa0090960-mRNA-1
chr1_2 CDS 73088649 73089542 73088649 ID=Msa0090960-mRNA-1:cds;Parent=Msa0090960-mRNA-1
chr1_2 CDS 73088337 73088513 73088337 ID=Msa0090960-mRNA-1:cds;Parent=Msa0090960-mRNA-1
chr1_2 CDS 73088113 73088208 73088113 ID=Msa0090960-mRNA-1:cds;Parent=Msa0090960-mRNA-1
Gene Sequence

>Msa0090960

ATGCAAAACTTTACTGAGAGATTAAGACCTCTTGTTGGTTTGAATGGCTGGGATTACTGTGTCTACTGGAAATTAAGTGAAGATCAAAGGTATCTTGAATGGTTGGGATGTTGTTGTGGTGGGAGTGAAAGCAACCAAAATGGTGGAGAAGAACACCTTTTCCCTGTCTCTTCATGTAGGGATACAATGTTTTCACACCCAAGAACAAACTCTTGTGATCTTCTTTCCCAACTTTCCACTTCCATACCTATAGATTCAGGGATTCATGCACAGGCTCTATTAACTAACCAACCCAATTGGTTGAACTATCCCAATAGCTTGGATCCAAACACTTTACATGAAACAATTAATGGGACCCATGTTTTGATTCCAGTGCCTGGTGGACTGGTTGAGCTCTTTGTAACTAAACAGGTTGGTGAAGATCAAAATGTAATAGATTTTATCACATCTCAATGCATTGTCATGGTGGATCAAGAAGGGATGAACCACTCAATTGGTTTCAATTCAATGAGCAACATGCAATCGAATCCAATTGTGGGTGATGAAAATGATGGAAATAATACAAACAATATTTTCCATTCATCAGAGACATTGAATCTTCCACATGACATATCTGTATTGAACTTCATGCAACAGTTCAATTACAGTTACAATCAACAACAAAACAGAATCAAGAACGACGAAACCTTCTCTGAAGAATACCAAGGTTCTTTTCTTCAGGATCAAGAAAACAACAACACTCTCAAATCACACACAGAAGAGGTGCATGATAACAAAAGCTTGATGACAGATAATAATCAATATATGTTTGTGGACCCATTAGACACAAAAAAGAAGCAAGAACATGTTGTTGGTAGAGCAGATTCTATGTCAGATTGCAGTGATCAGAATGAAGAAGAGGATGATGGAAAATATAGGAGAAGAAGTGGAAAAGGAAACCAATCAAAGAACCTTGTTGCTGAGAGGAAGAGAAGGAAGAAACTGAATGATAGGTTATATAACCTTCGTTCATTGGTTCCAAGAATCTCAAAGCTTGATAGAGCATCTATTCTTGGAGATGCTATTGAATTTGTGAAGGATTTGCAGAAGCAAGTGAAAGAGCTTCAAGATGAACTTGAGGAAAATTCAGACACAGGAACTGAAAGTAACTGTGTATATGTTGATGGTGTTCAAGTTCAACCAAATAATAATAACAATAATGTTCCAAAAGCAGAACATGGATTTCATGTTGGGAATGGCTATGTTTCAAAACAAAAGCAGGAAGATGTTGGTACTGTTACTGACAAGCAGACACAGCAGATGGAGGCACAAGTGGAAGTGGCTCAGATAGATGGGAATGAGTACTTTGTGAAGGTGTTTTGTGAGCACAGGCCAGGTGGTTTTGTGAAATTGATGGAGGCTTTGAACACTTTAGGCATGGATGTAATGCATGCCACAGTAACCAGTCACAAGGGTCTTGTCTCAAATGTTTTTAAAGTTGAGAAAAAGGAGAGTGAAATAGTTGAGGCTGAAGAAGTTAGAGATTCACTACTAGAGCTGACACGGAACAAATCTTCATGCTGGAACTTGGAATCATGA
Protein sequence

>Msa0090960

MQNFTERLRPLVGLNGWDYCVYWKLSEDQRYLEWLGCCCGGSESNQNGGEEHLFPVSSCRDTMFSHPRTNSCDLLSQLSTSIPIDSGIHAQALLTNQPNWLNYPNSLDPNTLHETINGTHVLIPVPGGLVELFVTKQVGEDQNVIDFITSQCIVMVDQEGMNHSIGFNSMSNMQSNPIVGDENDGNNTNNIFHSSETLNLPHDISVLNFMQQFNYSYNQQQNRIKNDETFSEEYQGSFLQDQENNNTLKSHTEEVHDNKSLMTDNNQYMFVDPLDTKKKQEHVVGRADSMSDCSDQNEEEDDGKYRRRSGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEENSDTGTESNCVYVDGVQVQPNNNNNNVPKAEHGFHVGNGYVSKQKQEDVGTVTDKQTQQMEAQVEVAQIDGNEYFVKVFCEHRPGGFVKLMEALNTLGMDVMHATVTSHKGLVSNVFKVEKKESEIVEAEEVRDSLLELTRNKSSCWNLES*