Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0091820 | XP_003612221.1 | 97.596 | 416 | 10 | 0 | 1 | 416 | 1 | 416 | 0.0 | 849 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0091820 | sp|Q8L7E9|MCAC1_ARATH | 68.421 | 418 | 126 | 3 | 3 | 415 | 4 | 420 | 0.0 | 580 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0091820 | G7JXK8 | 97.596 | 416 | 10 | 0 | 1 | 416 | 1 | 416 | 0.0 | 849 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0091820 | Msa0838340 | 0.833959 | 3.950699e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0091820 | MtrunA17_Chr5g0405841 | 97.596 | 416 | 10 | 0 | 1 | 416 | 1 | 416 | 0.0 | 849 |
| Msa0091820 | MtrunA17_Chr8g0371431 | 77.251 | 422 | 89 | 3 | 2 | 416 | 3 | 424 | 0.0 | 671 |
| Msa0091820 | MtrunA17_Chr4g0045011 | 35.897 | 117 | 68 | 3 | 285 | 397 | 54 | 167 | 1.63e-11 | 63.2 |
| Msa0091820 | MtrunA17_Chr8g0391431 | 34.862 | 109 | 66 | 3 | 294 | 399 | 51 | 157 | 3.88e-11 | 62.0 |
| Msa0091820 | MtrunA17_Chr2g0331531 | 27.841 | 176 | 98 | 5 | 259 | 414 | 3 | 169 | 4.32e-11 | 61.2 |
| Msa0091820 | MtrunA17_Chr5g0402421 | 32.090 | 134 | 83 | 4 | 272 | 399 | 29 | 160 | 6.28e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0091820 | AT4G35920.1 | 68.421 | 418 | 126 | 3 | 3 | 415 | 4 | 420 | 0.0 | 580 |
| Msa0091820 | AT4G35920.5 | 68.421 | 418 | 126 | 3 | 3 | 415 | 4 | 420 | 0.0 | 580 |
| Msa0091820 | AT4G35920.4 | 68.421 | 418 | 126 | 3 | 3 | 415 | 4 | 420 | 0.0 | 580 |
| Msa0091820 | AT4G35920.2 | 68.421 | 418 | 126 | 3 | 3 | 415 | 4 | 420 | 0.0 | 580 |
| Msa0091820 | AT4G35920.3 | 68.421 | 418 | 126 | 3 | 3 | 415 | 4 | 420 | 0.0 | 580 |
| Msa0091820 | AT2G17780.7 | 61.483 | 418 | 150 | 7 | 3 | 415 | 4 | 415 | 3.25e-177 | 501 |
| Msa0091820 | AT2G17780.6 | 61.483 | 418 | 150 | 7 | 3 | 415 | 4 | 415 | 3.25e-177 | 501 |
| Msa0091820 | AT2G17780.10 | 61.483 | 418 | 150 | 7 | 3 | 415 | 4 | 415 | 3.25e-177 | 501 |
| Msa0091820 | AT2G17780.5 | 61.483 | 418 | 150 | 7 | 3 | 415 | 4 | 415 | 3.25e-177 | 501 |
| Msa0091820 | AT2G17780.1 | 61.483 | 418 | 150 | 7 | 3 | 415 | 4 | 415 | 3.25e-177 | 501 |
| Msa0091820 | AT2G17780.2 | 61.298 | 416 | 152 | 6 | 3 | 415 | 4 | 413 | 1.96e-176 | 499 |
| Msa0091820 | AT2G17780.3 | 62.155 | 399 | 143 | 5 | 3 | 399 | 4 | 396 | 4.91e-173 | 490 |
| Msa0091820 | AT2G17780.9 | 62.155 | 399 | 143 | 5 | 3 | 399 | 4 | 396 | 4.91e-173 | 490 |
| Msa0091820 | AT2G17780.8 | 60.870 | 368 | 136 | 5 | 3 | 368 | 4 | 365 | 3.00e-153 | 439 |
| Msa0091820 | AT2G17780.4 | 59.223 | 309 | 118 | 5 | 3 | 309 | 4 | 306 | 1.18e-117 | 345 |
| Msa0091820 | AT5G35525.1 | 35.780 | 109 | 69 | 1 | 290 | 397 | 11 | 119 | 3.91e-12 | 64.3 |
| Msa0091820 | AT1G14870.1 | 33.945 | 109 | 71 | 1 | 290 | 397 | 11 | 119 | 5.28e-12 | 63.9 |
| Msa0091820 | AT3G18470.1 | 28.358 | 134 | 81 | 3 | 292 | 414 | 2 | 131 | 5.71e-12 | 63.2 |
| Msa0091820 | AT1G14870.2 | 33.945 | 109 | 71 | 1 | 290 | 397 | 11 | 119 | 2.33e-11 | 62.0 |
Find 110 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAGGATAATGCTATTTC+AGG | 0.188387 | 1_2:+73996130 | Msa0091820:five_prime_UTR |
| ACAATGTCATTTAGTTGTTT+AGG | 0.202753 | 1_2:+74000953 | Msa0091820:three_prime_UTR |
| ACTATACATACATAATTTAA+AGG | 0.212405 | 1_2:-74001066 | None:intergenic |
| ACAAAGGTCACAAGCAAATT+TGG | 0.213705 | 1_2:+73998358 | Msa0091820:CDS |
| AAGGCAAGAACCATGTATTT+TGG | 0.228382 | 1_2:+74001027 | Msa0091820:three_prime_UTR |
| CAATGTCATTTAGTTGTTTA+GGG | 0.257819 | 1_2:+74000954 | Msa0091820:three_prime_UTR |
| CGGTTGACATCACGTCCTTT+TGG | 0.264730 | 1_2:-73998753 | None:intergenic |
| TCCAGAGGCTCCCTAGTTTC+CGG | 0.297787 | 1_2:-73996770 | None:intergenic |
| GATGACAGACATTGCTTTGC+GGG | 0.316966 | 1_2:-73995709 | None:intergenic |
| GGAATATTGTTTATCAGTTC+AGG | 0.327510 | 1_2:+73996879 | Msa0091820:CDS |
| GATAGGTGGAGGGCTTGTTT+TGG | 0.331710 | 1_2:-74000902 | None:intergenic |
| GATGGCGTCGTGGGAACATA+TGG | 0.340322 | 1_2:+73996568 | Msa0091820:exon |
| CCAGAGGCTCCCTAGTTTCC+GGG | 0.365728 | 1_2:-73996769 | None:intergenic |
| GTTGCTATACTTGTTGCATT+AGG | 0.369664 | 1_2:+73999928 | Msa0091820:CDS |
| GCAATGCATTTGAAGTTGAT+TGG | 0.388921 | 1_2:+73996704 | Msa0091820:CDS |
| CACCCGGCAAAATGCGTCTT+AGG | 0.397235 | 1_2:-74001194 | None:intergenic |
| AGTCATTCAACGTTTATTAG+AGG | 0.401692 | 1_2:+73998397 | Msa0091820:CDS |
| GTATCCTCCTTGTCAGGATC+AGG | 0.403290 | 1_2:-73998242 | None:intergenic |
| CAATGCATTTGAAGTTGATT+GGG | 0.410219 | 1_2:+73996705 | Msa0091820:CDS |
| AGTAGCAGAGTATTCTCTTC+CGG | 0.418308 | 1_2:+73998427 | Msa0091820:CDS |
| TTTAGTTGTTTAGGGATTCA+AGG | 0.421307 | 1_2:+74000962 | Msa0091820:three_prime_UTR |
| TCGAAGTTACCTGTATTTGT+TGG | 0.422893 | 1_2:+73996847 | Msa0091820:CDS |
| CTTGTGACCTTTGTAGCTCT+AGG | 0.425566 | 1_2:-73998349 | None:intergenic |
| TTACTTAAGATTCCATGTAC+TGG | 0.427640 | 1_2:-74000924 | None:intergenic |
| CTTCTCTCCATTCTTGTACA+AGG | 0.437918 | 1_2:-74000576 | None:intergenic |
| GTGGAGATCCGTGGGGTTAG+TGG | 0.439025 | 1_2:+74000598 | Msa0091820:CDS |
| TGAAAGACCATTGTCATCAT+TGG | 0.439272 | 1_2:-73998504 | None:intergenic |
| TTGTGGACAATGCTAGAGTC+AGG | 0.440638 | 1_2:+73996954 | Msa0091820:CDS |
| TGAAGAGGTACCCGGAAACT+AGG | 0.442827 | 1_2:+73996759 | Msa0091820:CDS |
| ATCCCATTGCCAACAAATAC+AGG | 0.448284 | 1_2:-73996856 | None:intergenic |
| CCCGGAAACTAGGGAGCCTC+TGG | 0.448876 | 1_2:+73996769 | Msa0091820:CDS |
| AGAAGCATGTAATGAATTGA+TGG | 0.451145 | 1_2:+73999881 | Msa0091820:CDS |
| TACAGTGTTCAAGATCTTGA+AGG | 0.452198 | 1_2:+73996114 | Msa0091820:intron |
| CGCTTCAGGGAAAGTACAGT+TGG | 0.453374 | 1_2:-73998300 | None:intergenic |
| TGTTCCTCTTATCACTCTTG+TGG | 0.458143 | 1_2:+73996937 | Msa0091820:CDS |
| TGGATACTCTTTCGCAATCA+AGG | 0.461231 | 1_2:+73998552 | Msa0091820:CDS |
| CAAAAGGACGTGATGTCAAC+CGG | 0.461620 | 1_2:+73998754 | Msa0091820:CDS |
| CAGATATTCTGTTTCCCAAA+AGG | 0.463290 | 1_2:+73998738 | Msa0091820:intron |
| GTTCATATCAGCAGGAAGAT+TGG | 0.466681 | 1_2:+73998779 | Msa0091820:CDS |
| GAACATACAAAGAGAAGGTT+CGG | 0.466900 | 1_2:-73998827 | None:intergenic |
| GAAGTTGATTGGGAACTTGT+TGG | 0.469906 | 1_2:+73996715 | Msa0091820:CDS |
| GCAAATATAGCGCAATTGAC+TGG | 0.470701 | 1_2:+73996599 | Msa0091820:CDS |
| CTACTGGCATTCTAACTTGA+AGG | 0.475757 | 1_2:+74001008 | Msa0091820:three_prime_UTR |
| ATGGCGTCGTGGGAACATAT+GGG | 0.476474 | 1_2:+73996569 | Msa0091820:CDS |
| AGGTTGATTCTCAGAGAAGA+TGG | 0.478170 | 1_2:+73996550 | Msa0091820:intron |
| ATTAGACGATGAGGACCAAC+AGG | 0.479377 | 1_2:+73998199 | Msa0091820:CDS |
| TTACCTGTATTTGTTGGCAA+TGG | 0.483761 | 1_2:+73996853 | Msa0091820:CDS |
| CCCTCCACCTATCCAGTACA+TGG | 0.486096 | 1_2:+74000912 | Msa0091820:CDS |
| TACTTGCAGGAAATTGAAGA+AGG | 0.492263 | 1_2:-73995759 | None:intergenic |
| GCAACAAGTATAGCAACAAC+AGG | 0.494096 | 1_2:-73999922 | None:intergenic |
| TACCTGTATTTGTTGGCAAT+GGG | 0.494787 | 1_2:+73996854 | Msa0091820:CDS |
| AGTACAGTTGGGGTAAGAAC+AGG | 0.495891 | 1_2:-73998288 | None:intergenic |
| ACTGCAGTATCCTCCTTGTC+AGG | 0.505076 | 1_2:-73998248 | None:intergenic |
| GCTTCAGGGAAAGTACAGTT+GGG | 0.506385 | 1_2:-73998299 | None:intergenic |
| AACCGGAGGTTCATATCAGC+AGG | 0.512000 | 1_2:+73998771 | Msa0091820:CDS |
| ATTGTTATTTGCTTAATCAA+AGG | 0.512681 | 1_2:+73996219 | Msa0091820:five_prime_UTR |
| ATGTTGTGTAGCTTCTAGAT+TGG | 0.522186 | 1_2:+74001093 | Msa0091820:three_prime_UTR |
| TTCTCTCCATTCTTGTACAA+GGG | 0.527375 | 1_2:-74000575 | None:intergenic |
| GGTAATGTCGCAGTGGCACC+CGG | 0.527495 | 1_2:-74001210 | None:intergenic |
| CTCAGAGAAGATGGCGTCGT+GGG | 0.529686 | 1_2:+73996559 | Msa0091820:exon |
| AAGAATGGAAGATTTGAAGC+TGG | 0.530843 | 1_2:-73996180 | None:intergenic |
| TTCCTGCTGATATGAACCTC+CGG | 0.532068 | 1_2:-73998773 | None:intergenic |
| ACTCAGAAGGTCTTATATGT+TGG | 0.532293 | 1_2:+73996808 | Msa0091820:CDS |
| AGACATTATGTAGAGGCTAC+TGG | 0.533396 | 1_2:+74000992 | Msa0091820:three_prime_UTR |
| GTAGATGCTGTGAAGTTGAT+TGG | 0.535227 | 1_2:+73996623 | Msa0091820:CDS |
| CTCTGAGCTGAAGAGGTACC+CGG | 0.535961 | 1_2:+73996751 | Msa0091820:CDS |
| GGAGAGAAGTGGAGATCCGT+GGG | 0.536935 | 1_2:+74000590 | Msa0091820:CDS |
| TGATGACAGACATTGCTTTG+CGG | 0.537015 | 1_2:-73995710 | None:intergenic |
| TCCATGTACTGGATAGGTGG+AGG | 0.545948 | 1_2:-74000913 | None:intergenic |
| TGGCGTCGTGGGAACATATG+GGG | 0.551313 | 1_2:+73996570 | Msa0091820:CDS |
| GGTTATTGAACATGATCAGC+GGG | 0.551617 | 1_2:+73998169 | Msa0091820:CDS |
| AAGACATTCTTCTATCCTTG+TGG | 0.553618 | 1_2:+73999508 | Msa0091820:CDS |
| TTGTCCACAAGAGTGATAAG+AGG | 0.560131 | 1_2:-73996941 | None:intergenic |
| GAAGAGGTACCCGGAAACTA+GGG | 0.561185 | 1_2:+73996760 | Msa0091820:CDS |
| TAAGATTCCATGTACTGGAT+AGG | 0.565338 | 1_2:-74000919 | None:intergenic |
| GTTGCATTAGGAGAAAGCTT+CGG | 0.573745 | 1_2:+73999940 | Msa0091820:CDS |
| GCATCTTCAAGCTGCTCCAG+AGG | 0.575225 | 1_2:-73996785 | None:intergenic |
| GTTGTGCCCTTGTACAAGAA+TGG | 0.575953 | 1_2:+74000569 | Msa0091820:CDS |
| GATTCCATGTACTGGATAGG+TGG | 0.585710 | 1_2:-74000916 | None:intergenic |
| AGCTTGAAGATGCACTCAGA+AGG | 0.586177 | 1_2:+73996795 | Msa0091820:CDS |
| AGCTTAACCTAGAGCTACAA+AGG | 0.587180 | 1_2:+73998342 | Msa0091820:CDS |
| TTCATTACATGCTTCTGCAG+AGG | 0.589574 | 1_2:-73999874 | None:intergenic |
| TCAAGATCTCTGAGCTGAAG+AGG | 0.593903 | 1_2:+73996744 | Msa0091820:CDS |
| AAATAACTGTGTGCGCCTGT+TGG | 0.596782 | 1_2:-73998214 | None:intergenic |
| TGGAGAGAAGTGGAGATCCG+TGG | 0.601083 | 1_2:+74000589 | Msa0091820:CDS |
| TTTAAAACCTGATCCTGACA+AGG | 0.603010 | 1_2:+73998235 | Msa0091820:CDS |
| GGAGAGAACATACAAAGAGA+AGG | 0.604050 | 1_2:-73998832 | None:intergenic |
| ACTTGCAGGAAATTGAAGAA+GGG | 0.604207 | 1_2:-73995758 | None:intergenic |
| TGTATTTGTTGGCAATGGGA+TGG | 0.606590 | 1_2:+73996858 | Msa0091820:CDS |
| TGTACAAGAATGGAGAGAAG+TGG | 0.606865 | 1_2:+74000579 | Msa0091820:CDS |
| GCTCATTCAGGAGAGACTTG+AGG | 0.619148 | 1_2:+73998148 | Msa0091820:intron |
| CCATGTACTGGATAGGTGGA+GGG | 0.623104 | 1_2:-74000912 | None:intergenic |
| ACAGTGAGAACCAAAATACA+TGG | 0.626903 | 1_2:-74001037 | None:intergenic |
| TATTGTTTATCAGTTCAGGA+AGG | 0.633802 | 1_2:+73996883 | Msa0091820:CDS |
| ATCTTTGAAAATGTTCCACA+AGG | 0.635888 | 1_2:-73999523 | None:intergenic |
| TCCTAAAAGACATTATGTAG+AGG | 0.638908 | 1_2:+74000985 | Msa0091820:three_prime_UTR |
| GGCGTCGTGGGAACATATGG+GGG | 0.639992 | 1_2:+73996571 | Msa0091820:CDS |
| TGTGGACAATGCTAGAGTCA+GGG | 0.641994 | 1_2:+73996955 | Msa0091820:CDS |
| TCTCAGAGAAGATGGCGTCG+TGG | 0.648065 | 1_2:+73996558 | Msa0091820:exon |
| AAACAAAACAAAGAGTAGAG+TGG | 0.658970 | 1_2:+73995657 | Msa0091820:five_prime_UTR |
| AAAACCTGATCCTGACAAGG+AGG | 0.668934 | 1_2:+73998238 | Msa0091820:CDS |
| TCTGATGCCAATGATGACAA+TGG | 0.675518 | 1_2:+73998497 | Msa0091820:CDS |
| GGAATACACATTAGACGATG+AGG | 0.676469 | 1_2:+73998190 | Msa0091820:CDS |
| AGGTTATTGAACATGATCAG+CGG | 0.676879 | 1_2:+73998168 | Msa0091820:CDS |
| AAGACATACCACTAACCCCA+CGG | 0.680905 | 1_2:-74000606 | None:intergenic |
| TGATAAGAGGAACAAGACGT+AGG | 0.682558 | 1_2:-73996928 | None:intergenic |
| CTTCAGGGAAAGTACAGTTG+GGG | 0.689261 | 1_2:-73998298 | None:intergenic |
| TGAAAGCTGCAAGTACTGCA+AGG | 0.698868 | 1_2:+73996654 | Msa0091820:CDS |
| AAGGACGTGATGTCAACCGG+AGG | 0.738813 | 1_2:+73998757 | Msa0091820:CDS |
| GAGAGAAGTGGAGATCCGTG+GGG | 0.788408 | 1_2:+74000591 | Msa0091820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAATAATTAAAAAGA+AGG | - | chr1_2:73995911-73995930 | None:intergenic | 10.0% |
| !!! | ATTTTTTAAGGTTTAATTTT+TGG | + | chr1_2:73996046-73996065 | Msa0091820:intron | 10.0% |
| !!! | TTATTAATATTTTGTTTTCA+TGG | + | chr1_2:74001123-74001142 | Msa0091820:three_prime_UTR | 10.0% |
| !!! | TTCCTTTTCTTTATTTTTTA+AGG | + | chr1_2:73996034-73996053 | Msa0091820:intron | 15.0% |
| !! | AACCTTAAAAAATAAAGAAA+AGG | - | chr1_2:73996039-73996058 | None:intergenic | 15.0% |
| !! | AGAAAATGAAAATTAATAAG+TGG | - | chr1_2:73997199-73997218 | None:intergenic | 15.0% |
| !!! | CTTATTAATTTTCATTTTCT+TGG | + | chr1_2:73997199-73997218 | Msa0091820:intron | 15.0% |
| !!! | ATTAAGTAGTTTAGTTTTTT+TGG | + | chr1_2:73997465-73997484 | Msa0091820:intron | 15.0% |
| !!! | ATAACATATAAAGCTTTTTA+TGG | + | chr1_2:74000083-74000102 | Msa0091820:intron | 15.0% |
| !! | CAATAAAATTACGATAAAAA+AGG | + | chr1_2:74000414-74000433 | Msa0091820:intron | 15.0% |
| !! | TATGAAATATTTAAAAAGAC+TGG | - | chr1_2:74000480-74000499 | None:intergenic | 15.0% |
| !!! | TTACTATGAAATATTTTTGT+AGG | + | chr1_2:74000791-74000810 | Msa0091820:intron | 15.0% |
| !! | ACTATACATACATAATTTAA+AGG | - | chr1_2:74001069-74001088 | None:intergenic | 15.0% |
| !!! | AGGTTTAATTTTTGGTAATT+AGG | + | chr1_2:73996054-73996073 | Msa0091820:intron | 20.0% |
| !!! | ATTGTTATTTGCTTAATCAA+AGG | + | chr1_2:73996219-73996238 | Msa0091820:five_prime_UTR | 20.0% |
| !!! | ATTTTGATGCATGTTTTTTT+AGG | + | chr1_2:73996284-73996303 | Msa0091820:intron | 20.0% |
| !!! | ATTTTTGTTATTGTTGTTGA+TGG | + | chr1_2:73996314-73996333 | Msa0091820:intron | 20.0% |
| !!! | ATAACTTTGATGCATTTTTT+TGG | + | chr1_2:73996423-73996442 | Msa0091820:intron | 20.0% |
| !!! | TAACTTTGATGCATTTTTTT+GGG | + | chr1_2:73996424-73996443 | Msa0091820:intron | 20.0% |
| !!! | TTTGTGATTTTCTACTAATT+TGG | + | chr1_2:73997061-73997080 | Msa0091820:intron | 20.0% |
| !!! | TTGTGATTTTCTACTAATTT+GGG | + | chr1_2:73997062-73997081 | Msa0091820:intron | 20.0% |
| !! | AACTACTTAATATAGTTATC+TGG | - | chr1_2:73997456-73997475 | None:intergenic | 20.0% |
| !! | TTTGTTTAAATAGCATTTGA+CGG | + | chr1_2:73997607-73997626 | Msa0091820:intron | 20.0% |
| !!! | TATTATTTTCTGTCATGATA+AGG | + | chr1_2:73997748-73997767 | Msa0091820:intron | 20.0% |
| !! | ATAGTACTGCTTATTAAAAA+GGG | - | chr1_2:73997887-73997906 | None:intergenic | 20.0% |
| !! | TATAGTACTGCTTATTAAAA+AGG | - | chr1_2:73997888-73997907 | None:intergenic | 20.0% |
| !!! | ATTAATCTTCCTTACTATTT+TGG | + | chr1_2:73998666-73998685 | Msa0091820:intron | 20.0% |
| !!! | AAACTTTTAAAATATCAAGC+AGG | - | chr1_2:73998856-73998875 | None:intergenic | 20.0% |
| !!! | TGCTTGATATTTTAAAAGTT+TGG | + | chr1_2:73998855-73998874 | Msa0091820:intron | 20.0% |
| !! | ATAATTCATGAGAGTAATTA+GGG | - | chr1_2:73999009-73999028 | None:intergenic | 20.0% |
| !!! | ATACGATGATTTTTTTAACT+AGG | + | chr1_2:73999221-73999240 | Msa0091820:intron | 20.0% |
| !! | GAATATTGAATTAGATTAGA+TGG | + | chr1_2:73999263-73999282 | Msa0091820:intron | 20.0% |
| !!! | CTGTTTTACTAAAAACATAA+GGG | - | chr1_2:73999355-73999374 | None:intergenic | 20.0% |
| !!! | TCTGTTTTACTAAAAACATA+AGG | - | chr1_2:73999356-73999375 | None:intergenic | 20.0% |
| !! | TTTAGTAAAACAGAAAGATA+AGG | + | chr1_2:73999362-73999381 | Msa0091820:intron | 20.0% |
| !! | TAAGAAAATCAACTAAAGAT+AGG | + | chr1_2:73999423-73999442 | Msa0091820:intron | 20.0% |
| !!! | TACTTTTCATTCTTAGTAAT+TGG | + | chr1_2:73999461-73999480 | Msa0091820:intron | 20.0% |
| !! | TGAAATGAATACAATTTACA+CGG | - | chr1_2:74000126-74000145 | None:intergenic | 20.0% |
| !! | TGATAAGAAATAACCATTTA+GGG | - | chr1_2:74000825-74000844 | None:intergenic | 20.0% |
| !! | TTGATAAGAAATAACCATTT+AGG | - | chr1_2:74000826-74000845 | None:intergenic | 20.0% |
| ! | TGCAGAAAAAATCTTAAGAA+TGG | - | chr1_2:73996198-73996217 | None:intergenic | 25.0% |
| !! | TGTGATTTTCTACTAATTTG+GGG | + | chr1_2:73997063-73997082 | Msa0091820:intron | 25.0% |
| !! | GGAAGCATGTAATATATATT+AGG | + | chr1_2:73997769-73997788 | Msa0091820:intron | 25.0% |
| ! | AATTTCAATCACATTGTTTC+TGG | + | chr1_2:73997995-73998014 | Msa0091820:intron | 25.0% |
| !!! | TTTCTTTTTTAATCGCTTCA+GGG | - | chr1_2:73998316-73998335 | None:intergenic | 25.0% |
| !!! | TTTTCTTTTTTAATCGCTTC+AGG | - | chr1_2:73998317-73998336 | None:intergenic | 25.0% |
| ! | TGAAGCGATTAAAAAAGAAA+AGG | + | chr1_2:73998316-73998335 | Msa0091820:CDS | 25.0% |
| !!! | TCTTTCTTATGACTTTTTTC+AGG | - | chr1_2:73998464-73998483 | None:intergenic | 25.0% |
| ! | AATTATGATTTCTGCTTAAC+TGG | - | chr1_2:73998632-73998651 | None:intergenic | 25.0% |
| ! | AGTTAATGACCAAAATAGTA+AGG | - | chr1_2:73998678-73998697 | None:intergenic | 25.0% |
| ! | GATATATTACCTGTACATTA+TGG | + | chr1_2:73998908-73998927 | Msa0091820:intron | 25.0% |
| ! | TAATTCATGAGAGTAATTAG+GGG | - | chr1_2:73999008-73999027 | None:intergenic | 25.0% |
| ! | CATAATTCATGAGAGTAATT+AGG | - | chr1_2:73999010-73999029 | None:intergenic | 25.0% |
| ! | GTAACACTTATATATGTCTT+GGG | - | chr1_2:73999041-73999060 | None:intergenic | 25.0% |
| ! | TGTAACACTTATATATGTCT+TGG | - | chr1_2:73999042-73999061 | None:intergenic | 25.0% |
| ! | AAGACATATATAAGTGTTAC+AGG | + | chr1_2:73999041-73999060 | Msa0091820:intron | 25.0% |
| ! | TAATTGAGTGAGTCAAAATT+TGG | - | chr1_2:73999142-73999161 | None:intergenic | 25.0% |
| !! | AATGAAAAGTATAGAGAGAT+TGG | - | chr1_2:73999452-73999471 | None:intergenic | 25.0% |
| ! | TTAGTAATTGGTATAGCATT+TGG | + | chr1_2:73999473-73999492 | Msa0091820:intron | 25.0% |
| ! | AAGATAGCTAACTTACAAAT+GGG | - | chr1_2:73999571-73999590 | None:intergenic | 25.0% |
| ! | TAGAAATTAGTGAATCAAGT+TGG | + | chr1_2:73999651-73999670 | Msa0091820:intron | 25.0% |
| ! | GAAAATCATGTCTTCATTAT+AGG | - | chr1_2:73999698-73999717 | None:intergenic | 25.0% |
| !!! | TTTTATGGTACCATTTTTTG+TGG | + | chr1_2:74000098-74000117 | Msa0091820:intron | 25.0% |
| !! | TCGTAATTTTATTGTGTTGT+AGG | - | chr1_2:74000408-74000427 | None:intergenic | 25.0% |
| ! | ATAGTAAGATGAAGAATACA+TGG | - | chr1_2:74000756-74000775 | None:intergenic | 25.0% |
| !! | ACAATGTCATTTAGTTGTTT+AGG | + | chr1_2:74000953-74000972 | Msa0091820:three_prime_UTR | 25.0% |
| !! | CAATGTCATTTAGTTGTTTA+GGG | + | chr1_2:74000954-74000973 | Msa0091820:three_prime_UTR | 25.0% |
| AAACAAAACAAAGAGTAGAG+TGG | + | chr1_2:73995657-73995676 | Msa0091820:five_prime_UTR | 30.0% | |
| TAGTGAAAGTTATTACTTGC+AGG | - | chr1_2:73995775-73995794 | None:intergenic | 30.0% | |
| AGCATGAAAATTGAAATCCA+TGG | - | chr1_2:73995967-73995986 | None:intergenic | 30.0% | |
| ! | ATGGATTTCAATTTTCATGC+TGG | + | chr1_2:73995966-73995985 | Msa0091820:intron | 30.0% |
| !! | TTGAAGGATAATGCTATTTC+AGG | + | chr1_2:73996130-73996149 | Msa0091820:five_prime_UTR | 30.0% |
| !! | AATGCAATTTTGACGCTATA+AGG | + | chr1_2:73996368-73996387 | Msa0091820:intron | 30.0% |
| ! | CAATGCATTTGAAGTTGATT+GGG | + | chr1_2:73996705-73996724 | Msa0091820:CDS | 30.0% |
| GGAATATTGTTTATCAGTTC+AGG | + | chr1_2:73996879-73996898 | Msa0091820:CDS | 30.0% | |
| TATTGTTTATCAGTTCAGGA+AGG | + | chr1_2:73996883-73996902 | Msa0091820:CDS | 30.0% | |
| AAGCATATTGAGTGAGTAAT+TGG | + | chr1_2:73997136-73997155 | Msa0091820:intron | 30.0% | |
| ATTCCTGGTTTATGAAAATC+TGG | + | chr1_2:73997391-73997410 | Msa0091820:intron | 30.0% | |
| TTCCTGGTTTATGAAAATCT+GGG | + | chr1_2:73997392-73997411 | Msa0091820:intron | 30.0% | |
| !!! | ATGTTTTAGTTGCATCTTTG+TGG | + | chr1_2:73997826-73997845 | Msa0091820:intron | 30.0% |
| AGCAGTACTATATAAAGAAG+TGG | + | chr1_2:73997896-73997915 | Msa0091820:intron | 30.0% | |
| TTGCTCAATTGATTACAACT+TGG | - | chr1_2:73997926-73997945 | None:intergenic | 30.0% | |
| CATATTTCCCTACATTTGTA+AGG | + | chr1_2:73998024-73998043 | Msa0091820:intron | 30.0% | |
| TCTAAGTCCTTACAAATGTA+GGG | - | chr1_2:73998034-73998053 | None:intergenic | 30.0% | |
| AGTTAGTGACAATATAACAC+AGG | - | chr1_2:73998057-73998076 | None:intergenic | 30.0% | |
| ACCAACCAAATTTACACATT+CGG | - | chr1_2:73998097-73998116 | None:intergenic | 30.0% | |
| AGTCATTCAACGTTTATTAG+AGG | + | chr1_2:73998397-73998416 | Msa0091820:CDS | 30.0% | |
| TGAAAAATACCATGCAAAAG+TGG | + | chr1_2:73998532-73998551 | Msa0091820:CDS | 30.0% | |
| ! | TAACTTATATCGACTGTGTT+TGG | + | chr1_2:73998693-73998712 | Msa0091820:intron | 30.0% |
| TGACATAATGAAAATGCACA+AGG | - | chr1_2:73998968-73998987 | None:intergenic | 30.0% | |
| TTTACCTTACAAGTTAACTC+AGG | + | chr1_2:73999286-73999305 | Msa0091820:intron | 30.0% | |
| !!! | AGGGTTTTTTAATGTTCAGT+GGG | - | chr1_2:73999336-73999355 | None:intergenic | 30.0% |
| !!! | AAGGGTTTTTTAATGTTCAG+TGG | - | chr1_2:73999337-73999356 | None:intergenic | 30.0% |
| ! | CATGTTTTTCTTCTGTTCAT+AGG | - | chr1_2:73999390-73999409 | None:intergenic | 30.0% |
| CTATGAACAGAAGAAAAACA+TGG | + | chr1_2:73999388-73999407 | Msa0091820:intron | 30.0% | |
| ! | ATCTTTGAAAATGTTCCACA+AGG | - | chr1_2:73999526-73999545 | None:intergenic | 30.0% |
| TTGCTACAGTTGTAAAAAAC+AGG | + | chr1_2:73999545-73999564 | Msa0091820:CDS | 30.0% | |
| CAAGATAGCTAACTTACAAA+TGG | - | chr1_2:73999572-73999591 | None:intergenic | 30.0% | |
| TAACTTATGAGATAATGCCA+AGG | + | chr1_2:73999738-73999757 | Msa0091820:intron | 30.0% | |
| AACTTATGAGATAATGCCAA+GGG | + | chr1_2:73999739-73999758 | Msa0091820:intron | 30.0% | |
| ! | TATGTTGCTTATATTCTCAC+TGG | + | chr1_2:73999767-73999786 | Msa0091820:intron | 30.0% |
| CAAACACTAAAACATTATCG+AGG | + | chr1_2:73999818-73999837 | Msa0091820:intron | 30.0% | |
| ! | AGAAGCATGTAATGAATTGA+TGG | + | chr1_2:73999881-73999900 | Msa0091820:CDS | 30.0% |
| AACAAGTCATATTTATGCAG+AGG | - | chr1_2:74000002-74000021 | None:intergenic | 30.0% | |
| TATAAAAATCCACAAACACG+AGG | - | chr1_2:74000039-74000058 | None:intergenic | 30.0% | |
| CGTGTATATGAAAATAGTTG+TGG | - | chr1_2:74000174-74000193 | None:intergenic | 30.0% | |
| ! | TAACTTGTGACTTCTAATCT+AGG | - | chr1_2:74000349-74000368 | None:intergenic | 30.0% |
| ! | AAGGTATTTGTTAAGACTTG+AGG | + | chr1_2:74000433-74000452 | Msa0091820:intron | 30.0% |
| ATTTCTTATCAATGCTCAAG+TGG | + | chr1_2:74000834-74000853 | Msa0091820:intron | 30.0% | |
| ! | TTGATATTTAACCGTTTTGC+AGG | + | chr1_2:74000868-74000887 | Msa0091820:intron | 30.0% |
| TTACTTAAGATTCCATGTAC+TGG | - | chr1_2:74000927-74000946 | None:intergenic | 30.0% | |
| TTTAGTTGTTTAGGGATTCA+AGG | + | chr1_2:74000962-74000981 | Msa0091820:three_prime_UTR | 30.0% | |
| TCCTAAAAGACATTATGTAG+AGG | + | chr1_2:74000985-74001004 | Msa0091820:three_prime_UTR | 30.0% | |
| ! | CGTGAAAAAGCATAGAATTC+AGG | - | chr1_2:73995736-73995755 | None:intergenic | 35.0% |
| ACTTGCAGGAAATTGAAGAA+GGG | - | chr1_2:73995761-73995780 | None:intergenic | 35.0% | |
| TACTTGCAGGAAATTGAAGA+AGG | - | chr1_2:73995762-73995781 | None:intergenic | 35.0% | |
| ! | CAATTTCTCTAGTTTAGCCA+TGG | + | chr1_2:73995947-73995966 | Msa0091820:intron | 35.0% |
| TACAGTGTTCAAGATCTTGA+AGG | + | chr1_2:73996114-73996133 | Msa0091820:intron | 35.0% | |
| ! | AAGAATGGAAGATTTGAAGC+TGG | - | chr1_2:73996183-73996202 | None:intergenic | 35.0% |
| ! | GCAATGCATTTGAAGTTGAT+TGG | + | chr1_2:73996704-73996723 | Msa0091820:CDS | 35.0% |
| ! | ACTCAGAAGGTCTTATATGT+TGG | + | chr1_2:73996808-73996827 | Msa0091820:CDS | 35.0% |
| TCGAAGTTACCTGTATTTGT+TGG | + | chr1_2:73996847-73996866 | Msa0091820:CDS | 35.0% | |
| ! | TTACCTGTATTTGTTGGCAA+TGG | + | chr1_2:73996853-73996872 | Msa0091820:CDS | 35.0% |
| ! | TACCTGTATTTGTTGGCAAT+GGG | + | chr1_2:73996854-73996873 | Msa0091820:CDS | 35.0% |
| TTGAGTGAGTAATTGGCAAA+TGG | + | chr1_2:73997143-73997162 | Msa0091820:intron | 35.0% | |
| AGGGCTATCTAGTAAATAAG+TGG | - | chr1_2:73997309-73997328 | None:intergenic | 35.0% | |
| ACTTATTTACTAGATAGCCC+TGG | + | chr1_2:73997308-73997327 | Msa0091820:intron | 35.0% | |
| ! | CCAGGAATTTTCATTTCACT+GGG | - | chr1_2:73997379-73997398 | None:intergenic | 35.0% |
| ! | ACCAGGAATTTTCATTTCAC+TGG | - | chr1_2:73997380-73997399 | None:intergenic | 35.0% |
| ! | ATCCCAGATTTTCATAAACC+AGG | - | chr1_2:73997397-73997416 | None:intergenic | 35.0% |
| TCCTAGCTACTATGCATAAA+TGG | + | chr1_2:73997512-73997531 | Msa0091820:intron | 35.0% | |
| CCTAGCTACTATGCATAAAT+GGG | + | chr1_2:73997513-73997532 | Msa0091820:intron | 35.0% | |
| TGTTCATGTATGCAGAAGAA+GGG | - | chr1_2:73997705-73997724 | None:intergenic | 35.0% | |
| TTGTTCATGTATGCAGAAGA+AGG | - | chr1_2:73997706-73997725 | None:intergenic | 35.0% | |
| TAGGATTCAACTCATTTGTC+AGG | + | chr1_2:73997788-73997807 | Msa0091820:intron | 35.0% | |
| CCAAAACCAACTCTATCTAA+AGG | - | chr1_2:73997853-73997872 | None:intergenic | 35.0% | |
| !! | CCTTTAGATAGAGTTGGTTT+TGG | + | chr1_2:73997850-73997869 | Msa0091820:intron | 35.0% |
| ACATCTCTCACAAACATGAT+TGG | - | chr1_2:73997954-73997973 | None:intergenic | 35.0% | |
| GTCTAAGTCCTTACAAATGT+AGG | - | chr1_2:73998035-73998054 | None:intergenic | 35.0% | |
| AGCATCCGAATGTGTAAATT+TGG | + | chr1_2:73998089-73998108 | Msa0091820:intron | 35.0% | |
| TCCGAATGTGTAAATTTGGT+TGG | + | chr1_2:73998093-73998112 | Msa0091820:intron | 35.0% | |
| !! | AATTGCTTTTGTGCTCATTC+AGG | + | chr1_2:73998136-73998155 | Msa0091820:intron | 35.0% |
| AGGTTATTGAACATGATCAG+CGG | + | chr1_2:73998168-73998187 | Msa0091820:CDS | 35.0% | |
| ! | TTTAAAACCTGATCCTGACA+AGG | + | chr1_2:73998235-73998254 | Msa0091820:CDS | 35.0% |
| ACAAAGGTCACAAGCAAATT+TGG | + | chr1_2:73998358-73998377 | Msa0091820:CDS | 35.0% | |
| TGAAAGACCATTGTCATCAT+TGG | - | chr1_2:73998507-73998526 | None:intergenic | 35.0% | |
| !!! | AAAGAGTATCCACTTTTGCA+TGG | - | chr1_2:73998544-73998563 | None:intergenic | 35.0% |
| !! | GTGTTTGGTGCTTATATACA+TGG | + | chr1_2:73998708-73998727 | Msa0091820:intron | 35.0% |
| CAGATATTCTGTTTCCCAAA+AGG | + | chr1_2:73998738-73998757 | Msa0091820:intron | 35.0% | |
| GAACATACAAAGAGAAGGTT+CGG | - | chr1_2:73998830-73998849 | None:intergenic | 35.0% | |
| AATAGCGAACCATAATGTAC+AGG | - | chr1_2:73998920-73998939 | None:intergenic | 35.0% | |
| AATTAGCCCTTATGTCTTTG+TGG | + | chr1_2:73999157-73999176 | Msa0091820:intron | 35.0% | |
| AAGACATTCTTCTATCCTTG+TGG | + | chr1_2:73999508-73999527 | Msa0091820:CDS | 35.0% | |
| ! | GTTGCTATACTTGTTGCATT+AGG | + | chr1_2:73999928-73999947 | Msa0091820:CDS | 35.0% |
| TATTTATGCAGAGGAAAGGA+AGG | - | chr1_2:73999993-74000012 | None:intergenic | 35.0% | |
| GTCATATTTATGCAGAGGAA+AGG | - | chr1_2:73999997-74000016 | None:intergenic | 35.0% | |
| ATAATGTATTTGTCGAGCCT+TGG | + | chr1_2:74000296-74000315 | Msa0091820:intron | 35.0% | |
| ! | TTAATCGCAGTTACTTTCCA+TGG | + | chr1_2:74000500-74000519 | Msa0091820:intron | 35.0% |
| TTCTCTCCATTCTTGTACAA+GGG | - | chr1_2:74000578-74000597 | None:intergenic | 35.0% | |
| ATTGAACAGCTTGCATGATA+AGG | - | chr1_2:74000686-74000705 | None:intergenic | 35.0% | |
| ! | AATTTTACAGCAAGTGCAAC+AGG | - | chr1_2:74000718-74000737 | None:intergenic | 35.0% |
| AGATGAAGAATACATGGTTC+TGG | - | chr1_2:74000750-74000769 | None:intergenic | 35.0% | |
| !! | GTAGGTTTTTAAGCCCTAAA+TGG | + | chr1_2:74000809-74000828 | Msa0091820:intron | 35.0% |
| TAAGATTCCATGTACTGGAT+AGG | - | chr1_2:74000922-74000941 | None:intergenic | 35.0% | |
| ! | GCCTCTACATAATGTCTTTT+AGG | - | chr1_2:74000989-74001008 | None:intergenic | 35.0% |
| ! | AAGGCAAGAACCATGTATTT+TGG | + | chr1_2:74001027-74001046 | Msa0091820:three_prime_UTR | 35.0% |
| ACAGTGAGAACCAAAATACA+TGG | - | chr1_2:74001040-74001059 | None:intergenic | 35.0% | |
| ATGTTGTGTAGCTTCTAGAT+TGG | + | chr1_2:74001093-74001112 | Msa0091820:three_prime_UTR | 35.0% | |
| TGATGACAGACATTGCTTTG+CGG | - | chr1_2:73995713-73995732 | None:intergenic | 40.0% | |
| ! | AGCTGATGTGGCTTGATTTT+AGG | + | chr1_2:73996530-73996549 | Msa0091820:intron | 40.0% |
| ! | AGGTTGATTCTCAGAGAAGA+TGG | + | chr1_2:73996550-73996569 | Msa0091820:intron | 40.0% |
| GCAAATATAGCGCAATTGAC+TGG | + | chr1_2:73996599-73996618 | Msa0091820:CDS | 40.0% | |
| ! | GTAGATGCTGTGAAGTTGAT+TGG | + | chr1_2:73996623-73996642 | Msa0091820:CDS | 40.0% |
| ! | GAAGTTGATTGGGAACTTGT+TGG | + | chr1_2:73996715-73996734 | Msa0091820:CDS | 40.0% |
| ATCCCATTGCCAACAAATAC+AGG | - | chr1_2:73996859-73996878 | None:intergenic | 40.0% | |
| ! | TGTATTTGTTGGCAATGGGA+TGG | + | chr1_2:73996858-73996877 | Msa0091820:CDS | 40.0% |
| TGATAAGAGGAACAAGACGT+AGG | - | chr1_2:73996931-73996950 | None:intergenic | 40.0% | |
| TGTTCCTCTTATCACTCTTG+TGG | + | chr1_2:73996937-73996956 | Msa0091820:CDS | 40.0% | |
| TTGTCCACAAGAGTGATAAG+AGG | - | chr1_2:73996944-73996963 | None:intergenic | 40.0% | |
| TCTGCTATCTCTTGTGTGAA+TGG | + | chr1_2:73996989-73997008 | Msa0091820:intron | 40.0% | |
| ACTCACTCAATATGCTTGCA+TGG | - | chr1_2:73997133-73997152 | None:intergenic | 40.0% | |
| ATTTACTAGATAGCCCTGGT+CGG | + | chr1_2:73997312-73997331 | Msa0091820:intron | 40.0% | |
| CACCTGCCATACGAAAATAT+TGG | + | chr1_2:73997353-73997372 | Msa0091820:intron | 40.0% | |
| ! | ACTGGGCCAATATTTTCGTA+TGG | - | chr1_2:73997362-73997381 | None:intergenic | 40.0% |
| CCCAGTGAAATGAAAATTCC+TGG | + | chr1_2:73997376-73997395 | Msa0091820:intron | 40.0% | |
| CCCATTTATGCATAGTAGCT+AGG | - | chr1_2:73997516-73997535 | None:intergenic | 40.0% | |
| TGTGGTCCTTTAGATAGAGT+TGG | + | chr1_2:73997844-73997863 | Msa0091820:intron | 40.0% | |
| GGTTATTGAACATGATCAGC+GGG | + | chr1_2:73998169-73998188 | Msa0091820:CDS | 40.0% | |
| GGAATACACATTAGACGATG+AGG | + | chr1_2:73998190-73998209 | Msa0091820:CDS | 40.0% | |
| AGCTTAACCTAGAGCTACAA+AGG | + | chr1_2:73998342-73998361 | Msa0091820:CDS | 40.0% | |
| ! | AGTAGCAGAGTATTCTCTTC+CGG | + | chr1_2:73998427-73998446 | Msa0091820:CDS | 40.0% |
| !!! | TTTTCAGGTGAACACTTGTC+CGG | - | chr1_2:73998449-73998468 | None:intergenic | 40.0% |
| TCTGATGCCAATGATGACAA+TGG | + | chr1_2:73998497-73998516 | Msa0091820:CDS | 40.0% | |
| TGGATACTCTTTCGCAATCA+AGG | + | chr1_2:73998552-73998571 | Msa0091820:CDS | 40.0% | |
| TTTCCCTCTTCGACAACTTA+AGG | + | chr1_2:73998582-73998601 | Msa0091820:intron | 40.0% | |
| ! | ACACCTTAAGTTGTCGAAGA+GGG | - | chr1_2:73998588-73998607 | None:intergenic | 40.0% |
| ! | AACACCTTAAGTTGTCGAAG+AGG | - | chr1_2:73998589-73998608 | None:intergenic | 40.0% |
| !! | TCGACAACTTAAGGTGTTGT+AGG | + | chr1_2:73998591-73998610 | Msa0091820:intron | 40.0% |
| !! | AAGGTGTTGTAGGTTCACTT+AGG | + | chr1_2:73998601-73998620 | Msa0091820:intron | 40.0% |
| GTTCATATCAGCAGGAAGAT+TGG | + | chr1_2:73998779-73998798 | Msa0091820:CDS | 40.0% | |
| GGAGAGAACATACAAAGAGA+AGG | - | chr1_2:73998835-73998854 | None:intergenic | 40.0% | |
| CACAAGCCACAAAGACATAA+GGG | - | chr1_2:73999166-73999185 | None:intergenic | 40.0% | |
| !! | CATGCCTGAGTTAACTTGTA+AGG | - | chr1_2:73999293-73999312 | None:intergenic | 40.0% |
| TCAGGCATGAGTAATTGTCA+AGG | + | chr1_2:73999304-73999323 | Msa0091820:intron | 40.0% | |
| TAAGCAACATAGAGAACCCT+TGG | - | chr1_2:73999758-73999777 | None:intergenic | 40.0% | |
| TTCATTACATGCTTCTGCAG+AGG | - | chr1_2:73999877-73999896 | None:intergenic | 40.0% | |
| GCAACAAGTATAGCAACAAC+AGG | - | chr1_2:73999925-73999944 | None:intergenic | 40.0% | |
| GTTGCATTAGGAGAAAGCTT+CGG | + | chr1_2:73999940-73999959 | Msa0091820:CDS | 40.0% | |
| TTACACGGCACCACAAAAAA+TGG | - | chr1_2:74000111-74000130 | None:intergenic | 40.0% | |
| GACTTCTAATCTAGGTCACA+TGG | - | chr1_2:74000341-74000360 | None:intergenic | 40.0% | |
| CAAGTAGAGAGACAGTTTCA+AGG | - | chr1_2:74000375-74000394 | None:intergenic | 40.0% | |
| AACTGTCTCTCTACTTGTAG+AGG | + | chr1_2:74000378-74000397 | Msa0091820:intron | 40.0% | |
| CTTCTCTCCATTCTTGTACA+AGG | - | chr1_2:74000579-74000598 | None:intergenic | 40.0% | |
| TGTACAAGAATGGAGAGAAG+TGG | + | chr1_2:74000579-74000598 | Msa0091820:CDS | 40.0% | |
| ! | CATGATAAGGCACTTCAAAC+AGG | - | chr1_2:74000673-74000692 | None:intergenic | 40.0% |
| ! | ATTTAACCGTTTTGCAGGTG+CGG | + | chr1_2:74000873-74000892 | Msa0091820:intron | 40.0% |
| AGACATTATGTAGAGGCTAC+TGG | + | chr1_2:74000992-74001011 | Msa0091820:three_prime_UTR | 40.0% | |
| CTACTGGCATTCTAACTTGA+AGG | + | chr1_2:74001008-74001027 | Msa0091820:three_prime_UTR | 40.0% | |
| ! | ATTCCTAAGACGCATTTTGC+CGG | + | chr1_2:74001191-74001210 | Msa0091820:three_prime_UTR | 40.0% |
| GATGACAGACATTGCTTTGC+GGG | - | chr1_2:73995712-73995731 | None:intergenic | 45.0% | |
| ACTGATGTCTTGAGCTGATG+TGG | + | chr1_2:73996518-73996537 | Msa0091820:intron | 45.0% | |
| ! | TGAAAGCTGCAAGTACTGCA+AGG | + | chr1_2:73996654-73996673 | Msa0091820:CDS | 45.0% |
| TCAAGATCTCTGAGCTGAAG+AGG | + | chr1_2:73996744-73996763 | Msa0091820:CDS | 45.0% | |
| AGCTTGAAGATGCACTCAGA+AGG | + | chr1_2:73996795-73996814 | Msa0091820:CDS | 45.0% | |
| TTGTGGACAATGCTAGAGTC+AGG | + | chr1_2:73996954-73996973 | Msa0091820:CDS | 45.0% | |
| TGTGGACAATGCTAGAGTCA+GGG | + | chr1_2:73996955-73996974 | Msa0091820:CDS | 45.0% | |
| TGATGCCTAAGCCTAACTCT+GGG | + | chr1_2:73997224-73997243 | Msa0091820:intron | 45.0% | |
| CAAATCTTCCACCCAGAGTT+AGG | - | chr1_2:73997238-73997257 | None:intergenic | 45.0% | |
| TTTACTAGATAGCCCTGGTC+GGG | + | chr1_2:73997313-73997332 | Msa0091820:intron | 45.0% | |
| TTTAATAGCAGACCCGACCA+GGG | - | chr1_2:73997328-73997347 | None:intergenic | 45.0% | |
| ATTTAATAGCAGACCCGACC+AGG | - | chr1_2:73997329-73997348 | None:intergenic | 45.0% | |
| ! | GGCCAATATTTTCGTATGGC+AGG | - | chr1_2:73997358-73997377 | None:intergenic | 45.0% |
| ATTAGACGATGAGGACCAAC+AGG | + | chr1_2:73998199-73998218 | Msa0091820:CDS | 45.0% | |
| AAATAACTGTGTGCGCCTGT+TGG | - | chr1_2:73998217-73998236 | None:intergenic | 45.0% | |
| AAAACCTGATCCTGACAAGG+AGG | + | chr1_2:73998238-73998257 | Msa0091820:CDS | 45.0% | |
| AGTACAGTTGGGGTAAGAAC+AGG | - | chr1_2:73998291-73998310 | None:intergenic | 45.0% | |
| ! | CTTCAGGGAAAGTACAGTTG+GGG | - | chr1_2:73998301-73998320 | None:intergenic | 45.0% |
| ! | GCTTCAGGGAAAGTACAGTT+GGG | - | chr1_2:73998302-73998321 | None:intergenic | 45.0% |
| CTTGTGACCTTTGTAGCTCT+AGG | - | chr1_2:73998352-73998371 | None:intergenic | 45.0% | |
| GGTGCTTATATACATGGCCT+CGG | + | chr1_2:73998714-73998733 | Msa0091820:intron | 45.0% | |
| GGAAACAGAATATCTGTCCG+AGG | - | chr1_2:73998734-73998753 | None:intergenic | 45.0% | |
| ! | GGTTGACATCACGTCCTTTT+GGG | - | chr1_2:73998755-73998774 | None:intergenic | 45.0% |
| CAAAAGGACGTGATGTCAAC+CGG | + | chr1_2:73998754-73998773 | Msa0091820:CDS | 45.0% | |
| TTCCTGCTGATATGAACCTC+CGG | - | chr1_2:73998776-73998795 | None:intergenic | 45.0% | |
| GCACAAGCCACAAAGACATA+AGG | - | chr1_2:73999167-73999186 | None:intergenic | 45.0% | |
| TGGTATAGCATTTGGTCTGC+AGG | + | chr1_2:73999481-73999500 | Msa0091820:intron | 45.0% | |
| CACAAACACGAGGCATAAAG+AGG | - | chr1_2:74000029-74000048 | None:intergenic | 45.0% | |
| CTCTTTATGCCTCGTGTTTG+TGG | + | chr1_2:74000027-74000046 | Msa0091820:intron | 45.0% | |
| GTCTCTCTACTTGTAGAGGT+AGG | + | chr1_2:74000382-74000401 | Msa0091820:intron | 45.0% | |
| ! | TCGCAGTTACTTTCCATGGT+AGG | + | chr1_2:74000504-74000523 | Msa0091820:intron | 45.0% |
| ! | CGCAGTTACTTTCCATGGTA+GGG | + | chr1_2:74000505-74000524 | Msa0091820:intron | 45.0% |
| ! | GCAGTTACTTTCCATGGTAG+GGG | + | chr1_2:74000506-74000525 | Msa0091820:intron | 45.0% |
| ! | CAGTTACTTTCCATGGTAGG+GGG | + | chr1_2:74000507-74000526 | Msa0091820:intron | 45.0% |
| ! | AGTTACTTTCCATGGTAGGG+GGG | + | chr1_2:74000508-74000527 | Msa0091820:intron | 45.0% |
| GTTGTGCCCTTGTACAAGAA+TGG | + | chr1_2:74000569-74000588 | Msa0091820:CDS | 45.0% | |
| AAGACATACCACTAACCCCA+CGG | - | chr1_2:74000609-74000628 | None:intergenic | 45.0% | |
| GATTCCATGTACTGGATAGG+TGG | - | chr1_2:74000919-74000938 | None:intergenic | 45.0% | |
| ! | TTCCTAAGACGCATTTTGCC+GGG | + | chr1_2:74001192-74001211 | Msa0091820:three_prime_UTR | 45.0% |
| !! | AAAAATTATAAATGTAATTA+TGG | + | chr1_2:73996493-73996512 | Msa0091820:intron | 5.0% |
| ATGGCGTCGTGGGAACATAT+GGG | + | chr1_2:73996569-73996588 | Msa0091820:CDS | 50.0% | |
| !! | TGAAGAGGTACCCGGAAACT+AGG | + | chr1_2:73996759-73996778 | Msa0091820:CDS | 50.0% |
| !! | GAAGAGGTACCCGGAAACTA+GGG | + | chr1_2:73996760-73996779 | Msa0091820:CDS | 50.0% |
| GTGATGCCTAAGCCTAACTC+TGG | + | chr1_2:73997223-73997242 | Msa0091820:intron | 50.0% | |
| TTCCACCCAGAGTTAGGCTT+AGG | - | chr1_2:73997232-73997251 | None:intergenic | 50.0% | |
| GGGTGGAAGATTTGAGAGAC+TGG | + | chr1_2:73997244-73997263 | Msa0091820:intron | 50.0% | |
| GCTCATTCAGGAGAGACTTG+AGG | + | chr1_2:73998148-73998167 | Msa0091820:intron | 50.0% | |
| GTATCCTCCTTGTCAGGATC+AGG | - | chr1_2:73998245-73998264 | None:intergenic | 50.0% | |
| ACTGCAGTATCCTCCTTGTC+AGG | - | chr1_2:73998251-73998270 | None:intergenic | 50.0% | |
| ! | CGCTTCAGGGAAAGTACAGT+TGG | - | chr1_2:73998303-73998322 | None:intergenic | 50.0% |
| ! | CGGTTGACATCACGTCCTTT+TGG | - | chr1_2:73998756-73998775 | None:intergenic | 50.0% |
| AACCGGAGGTTCATATCAGC+AGG | + | chr1_2:73998771-73998790 | Msa0091820:CDS | 50.0% | |
| AGGTCACATGGCAGCAATCA+CGG | - | chr1_2:74000329-74000348 | None:intergenic | 50.0% | |
| TCTTCTCCGCACCTGCAAAA+CGG | - | chr1_2:74000882-74000901 | None:intergenic | 50.0% | |
| !! | GATAGGTGGAGGGCTTGTTT+TGG | - | chr1_2:74000905-74000924 | None:intergenic | 50.0% |
| CCATGTACTGGATAGGTGGA+GGG | - | chr1_2:74000915-74000934 | None:intergenic | 50.0% | |
| TCCATGTACTGGATAGGTGG+AGG | - | chr1_2:74000916-74000935 | None:intergenic | 50.0% | |
| TCTCAGAGAAGATGGCGTCG+TGG | + | chr1_2:73996558-73996577 | Msa0091820:exon | 55.0% | |
| CTCAGAGAAGATGGCGTCGT+GGG | + | chr1_2:73996559-73996578 | Msa0091820:exon | 55.0% | |
| GATGGCGTCGTGGGAACATA+TGG | + | chr1_2:73996568-73996587 | Msa0091820:exon | 55.0% | |
| TGGCGTCGTGGGAACATATG+GGG | + | chr1_2:73996570-73996589 | Msa0091820:CDS | 55.0% | |
| !! | CTCTGAGCTGAAGAGGTACC+CGG | + | chr1_2:73996751-73996770 | Msa0091820:CDS | 55.0% |
| TCCAGAGGCTCCCTAGTTTC+CGG | - | chr1_2:73996773-73996792 | None:intergenic | 55.0% | |
| GCATCTTCAAGCTGCTCCAG+AGG | - | chr1_2:73996788-73996807 | None:intergenic | 55.0% | |
| TGCCTAAGCCTAACTCTGGG+TGG | + | chr1_2:73997227-73997246 | Msa0091820:intron | 55.0% | |
| AAGGACGTGATGTCAACCGG+AGG | + | chr1_2:73998757-73998776 | Msa0091820:CDS | 55.0% | |
| !! | GCAATCACGGTGTTGTGCCA+AGG | - | chr1_2:74000316-74000335 | None:intergenic | 55.0% |
| TCAACAAAGCCCCCCTACCA+TGG | - | chr1_2:74000520-74000539 | None:intergenic | 55.0% | |
| TGGAGAGAAGTGGAGATCCG+TGG | + | chr1_2:74000589-74000608 | Msa0091820:CDS | 55.0% | |
| GGAGAGAAGTGGAGATCCGT+GGG | + | chr1_2:74000590-74000609 | Msa0091820:CDS | 55.0% | |
| GAGAGAAGTGGAGATCCGTG+GGG | + | chr1_2:74000591-74000610 | Msa0091820:CDS | 55.0% | |
| CCCTCCACCTATCCAGTACA+TGG | + | chr1_2:74000912-74000931 | Msa0091820:CDS | 55.0% | |
| CACCCGGCAAAATGCGTCTT+AGG | - | chr1_2:74001197-74001216 | None:intergenic | 55.0% | |
| GGCGTCGTGGGAACATATGG+GGG | + | chr1_2:73996571-73996590 | Msa0091820:CDS | 60.0% | |
| CCAGAGGCTCCCTAGTTTCC+GGG | - | chr1_2:73996772-73996791 | None:intergenic | 60.0% | |
| ! | TGTGGCTTGTGCGATGTGCG+TGG | + | chr1_2:73999175-73999194 | Msa0091820:intron | 60.0% |
| GTGGAGATCCGTGGGGTTAG+TGG | + | chr1_2:74000598-74000617 | Msa0091820:CDS | 60.0% | |
| CCCGGAAACTAGGGAGCCTC+TGG | + | chr1_2:73996769-73996788 | Msa0091820:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 73995631 | 74001223 | 73995631 | ID=Msa0091820;Name=Msa0091820 |
| chr1_2 | mRNA | 73995631 | 74001223 | 73995631 | ID=Msa0091820-mRNA-1;Parent=Msa0091820;Name=Msa0091820-mRNA-1;_AED=0.16;_eAED=0.16;_QI=287|1|1|1|0.37|0.22|9|281|416 |
| chr1_2 | exon | 73995631 | 73995778 | 73995631 | ID=Msa0091820-mRNA-1:exon:26078;Parent=Msa0091820-mRNA-1 |
| chr1_2 | exon | 73996119 | 73996240 | 73996119 | ID=Msa0091820-mRNA-1:exon:26079;Parent=Msa0091820-mRNA-1 |
| chr1_2 | exon | 73996552 | 73996976 | 73996552 | ID=Msa0091820-mRNA-1:exon:26080;Parent=Msa0091820-mRNA-1 |
| chr1_2 | exon | 73998158 | 73998573 | 73998158 | ID=Msa0091820-mRNA-1:exon:26081;Parent=Msa0091820-mRNA-1 |
| chr1_2 | exon | 73998741 | 73998841 | 73998741 | ID=Msa0091820-mRNA-1:exon:26082;Parent=Msa0091820-mRNA-1 |
| chr1_2 | exon | 73999503 | 73999574 | 73999503 | ID=Msa0091820-mRNA-1:exon:26083;Parent=Msa0091820-mRNA-1 |
| chr1_2 | exon | 73999874 | 73999980 | 73999874 | ID=Msa0091820-mRNA-1:exon:26084;Parent=Msa0091820-mRNA-1 |
| chr1_2 | exon | 74000526 | 74000619 | 74000526 | ID=Msa0091820-mRNA-1:exon:26085;Parent=Msa0091820-mRNA-1 |
| chr1_2 | exon | 74000890 | 74001223 | 74000890 | ID=Msa0091820-mRNA-1:exon:26086;Parent=Msa0091820-mRNA-1 |
| chr1_2 | five_prime_UTR | 73995631 | 73995778 | 73995631 | ID=Msa0091820-mRNA-1:five_prime_utr;Parent=Msa0091820-mRNA-1 |
| chr1_2 | five_prime_UTR | 73996119 | 73996240 | 73996119 | ID=Msa0091820-mRNA-1:five_prime_utr;Parent=Msa0091820-mRNA-1 |
| chr1_2 | five_prime_UTR | 73996552 | 73996568 | 73996552 | ID=Msa0091820-mRNA-1:five_prime_utr;Parent=Msa0091820-mRNA-1 |
| chr1_2 | CDS | 73996569 | 73996976 | 73996569 | ID=Msa0091820-mRNA-1:cds;Parent=Msa0091820-mRNA-1 |
| chr1_2 | CDS | 73998158 | 73998573 | 73998158 | ID=Msa0091820-mRNA-1:cds;Parent=Msa0091820-mRNA-1 |
| chr1_2 | CDS | 73998741 | 73998841 | 73998741 | ID=Msa0091820-mRNA-1:cds;Parent=Msa0091820-mRNA-1 |
| chr1_2 | CDS | 73999503 | 73999574 | 73999503 | ID=Msa0091820-mRNA-1:cds;Parent=Msa0091820-mRNA-1 |
| chr1_2 | CDS | 73999874 | 73999980 | 73999874 | ID=Msa0091820-mRNA-1:cds;Parent=Msa0091820-mRNA-1 |
| chr1_2 | CDS | 74000526 | 74000619 | 74000526 | ID=Msa0091820-mRNA-1:cds;Parent=Msa0091820-mRNA-1 |
| chr1_2 | CDS | 74000890 | 74000942 | 74000890 | ID=Msa0091820-mRNA-1:cds;Parent=Msa0091820-mRNA-1 |
| chr1_2 | three_prime_UTR | 74000943 | 74001223 | 74000943 | ID=Msa0091820-mRNA-1:three_prime_utr;Parent=Msa0091820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
