Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0838340 | XP_003612221.1 | 84.375 | 416 | 11 | 3 | 3 | 364 | 1 | 416 | 0.0 | 702 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0838340 | sp|Q8L7E9|MCAC1_ARATH | 57.416 | 418 | 118 | 7 | 5 | 363 | 4 | 420 | 1.13e-156 | 449 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0838340 | G7JXK8 | 84.375 | 416 | 11 | 3 | 3 | 364 | 1 | 416 | 0.0 | 702 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000990 | Msa0838340 | 0.801541 | 8.576497e-49 | -8.615850e-47 |
| Msa0091820 | Msa0838340 | 0.833959 | 3.950699e-56 | -8.615850e-47 |
| Msa0759030 | Msa0838340 | 0.826655 | 2.408542e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0838340 | MtrunA17_Chr5g0405841 | 84.375 | 416 | 11 | 3 | 3 | 364 | 1 | 416 | 0.0 | 702 |
| Msa0838340 | MtrunA17_Chr8g0371431 | 67.062 | 422 | 78 | 6 | 4 | 364 | 3 | 424 | 0.0 | 541 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0838340 | AT4G35920.1 | 57.416 | 418 | 118 | 7 | 5 | 363 | 4 | 420 | 1.15e-157 | 449 |
| Msa0838340 | AT4G35920.5 | 57.416 | 418 | 118 | 7 | 5 | 363 | 4 | 420 | 1.15e-157 | 449 |
| Msa0838340 | AT4G35920.4 | 57.416 | 418 | 118 | 7 | 5 | 363 | 4 | 420 | 1.15e-157 | 449 |
| Msa0838340 | AT4G35920.2 | 57.416 | 418 | 118 | 7 | 5 | 363 | 4 | 420 | 1.15e-157 | 449 |
| Msa0838340 | AT4G35920.3 | 57.416 | 418 | 118 | 7 | 5 | 363 | 4 | 420 | 1.15e-157 | 449 |
| Msa0838340 | AT2G17780.7 | 51.807 | 415 | 141 | 9 | 5 | 363 | 4 | 415 | 1.47e-132 | 385 |
| Msa0838340 | AT2G17780.6 | 51.807 | 415 | 141 | 9 | 5 | 363 | 4 | 415 | 1.47e-132 | 385 |
| Msa0838340 | AT2G17780.10 | 51.807 | 415 | 141 | 9 | 5 | 363 | 4 | 415 | 1.47e-132 | 385 |
| Msa0838340 | AT2G17780.5 | 51.807 | 415 | 141 | 9 | 5 | 363 | 4 | 415 | 1.47e-132 | 385 |
| Msa0838340 | AT2G17780.1 | 51.807 | 415 | 141 | 9 | 5 | 363 | 4 | 415 | 1.47e-132 | 385 |
| Msa0838340 | AT2G17780.2 | 51.574 | 413 | 143 | 8 | 5 | 363 | 4 | 413 | 9.16e-132 | 383 |
| Msa0838340 | AT2G17780.3 | 52.020 | 396 | 134 | 7 | 5 | 347 | 4 | 396 | 4.02e-128 | 374 |
| Msa0838340 | AT2G17780.9 | 52.020 | 396 | 134 | 7 | 5 | 347 | 4 | 396 | 4.02e-128 | 374 |
| Msa0838340 | AT2G17780.8 | 53.295 | 349 | 139 | 7 | 5 | 332 | 4 | 349 | 1.20e-116 | 343 |
| Msa0838340 | AT2G17780.4 | 55.882 | 306 | 119 | 6 | 5 | 297 | 4 | 306 | 1.25e-105 | 313 |
Find 93 sgRNAs with CRISPR-Local
Find 364 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATGTCATTTAGTTGTTT+AGG | 0.202753 | 5_4:+12715410 | Msa0838340:three_prime_UTR |
| ACTATACATACATAATTTAA+AGG | 0.212405 | 5_4:-12715523 | None:intergenic |
| ACAAAGGTCACAAGCAAATT+TGG | 0.213705 | 5_4:+12712815 | Msa0838340:CDS |
| AAGGCAAGAACCATGTATTT+TGG | 0.228382 | 5_4:+12715484 | Msa0838340:three_prime_UTR |
| CAATGTCATTTAGTTGTTTA+GGG | 0.257819 | 5_4:+12715411 | Msa0838340:three_prime_UTR |
| CGGTTGACATCACGTCCTTT+TGG | 0.264730 | 5_4:-12713210 | None:intergenic |
| TCCAGAGGCTCCCTAGTTTC+CGG | 0.297787 | 5_4:-12710123 | None:intergenic |
| GGAATATTGTTTATCAGTTC+AGG | 0.327510 | 5_4:+12710232 | Msa0838340:CDS |
| GATAGGTGGAGGGCTTGTTT+TGG | 0.331710 | 5_4:-12715359 | None:intergenic |
| GATGGCGTCGTGGGAACATA+TGG | 0.340322 | 5_4:+12709921 | Msa0838340:intron |
| CCAGAGGCTCCCTAGTTTCC+GGG | 0.365728 | 5_4:-12710122 | None:intergenic |
| GCAATGCATTTGAAGTTGAT+TGG | 0.388921 | 5_4:+12710057 | Msa0838340:CDS |
| CACCCGGCAAAATGCGTCTT+AGG | 0.397235 | 5_4:-12715651 | None:intergenic |
| GTATCCTCCTTGTCAGGATC+AGG | 0.403290 | 5_4:-12712699 | None:intergenic |
| CAATGCATTTGAAGTTGATT+GGG | 0.410219 | 5_4:+12710058 | Msa0838340:CDS |
| AGTAGCAGAGTATTCTCTTC+CGG | 0.418308 | 5_4:+12712884 | Msa0838340:CDS |
| TTTAGTTGTTTAGGGATTCA+AGG | 0.421307 | 5_4:+12715419 | Msa0838340:three_prime_UTR |
| TCGAAGTTACCTGTATTTGT+TGG | 0.422893 | 5_4:+12710200 | Msa0838340:CDS |
| CTTGTGACCTTTGTAGCTCT+AGG | 0.425566 | 5_4:-12712806 | None:intergenic |
| TTACTTAAGATTCCATGTAC+TGG | 0.427640 | 5_4:-12715381 | None:intergenic |
| CTTCTCTCCATTCTTGTACA+AGG | 0.437918 | 5_4:-12715033 | None:intergenic |
| GTGGAGATCCGTGGGGTTAG+TGG | 0.439025 | 5_4:+12715055 | Msa0838340:CDS |
| TGAAAGACCATTGTCATCAT+TGG | 0.439272 | 5_4:-12712961 | None:intergenic |
| TTGTGGACAATGCTAGAGTC+AGG | 0.440638 | 5_4:+12710307 | Msa0838340:CDS |
| TGAAGAGGTACCCGGAAACT+AGG | 0.442827 | 5_4:+12710112 | Msa0838340:CDS |
| ATCCCATTGCCAACAAATAC+AGG | 0.448284 | 5_4:-12710209 | None:intergenic |
| CCCGGAAACTAGGGAGCCTC+TGG | 0.448876 | 5_4:+12710122 | Msa0838340:CDS |
| CGCTTCAGGGAAAGTACAGT+TGG | 0.453374 | 5_4:-12712757 | None:intergenic |
| TGTTCCTCTTATCACTCTTG+TGG | 0.458143 | 5_4:+12710290 | Msa0838340:CDS |
| TGGATACTCTTTCGCAATCA+AGG | 0.461231 | 5_4:+12713009 | Msa0838340:CDS |
| CAAAAGGACGTGATGTCAAC+CGG | 0.461620 | 5_4:+12713211 | Msa0838340:CDS |
| CAGATATTCTGTTTCCCAAA+AGG | 0.463290 | 5_4:+12713195 | Msa0838340:intron |
| GTTCATATCAGCAGGAAGAT+TGG | 0.466681 | 5_4:+12713236 | Msa0838340:CDS |
| GAACATACAAAGAGAAGGTT+CGG | 0.466900 | 5_4:-12713284 | None:intergenic |
| GAAGTTGATTGGGAACTTGT+TGG | 0.469906 | 5_4:+12710068 | Msa0838340:CDS |
| GCAAATATAGCGCAATTGAC+TGG | 0.470701 | 5_4:+12709952 | Msa0838340:CDS |
| CTACTGGCATTCTAACTTGA+AGG | 0.475757 | 5_4:+12715465 | Msa0838340:three_prime_UTR |
| ATGGCGTCGTGGGAACATAT+GGG | 0.476474 | 5_4:+12709922 | Msa0838340:CDS |
| ATTAGACGATGAGGACCAAC+AGG | 0.479377 | 5_4:+12712656 | Msa0838340:CDS |
| TTACCTGTATTTGTTGGCAA+TGG | 0.483761 | 5_4:+12710206 | Msa0838340:CDS |
| CCCTCCACCTATCCAGTACA+TGG | 0.486096 | 5_4:+12715369 | Msa0838340:CDS |
| TACCTGTATTTGTTGGCAAT+GGG | 0.494787 | 5_4:+12710207 | Msa0838340:CDS |
| AGTACAGTTGGGGTAAGAAC+AGG | 0.495891 | 5_4:-12712745 | None:intergenic |
| ACTGCAGTATCCTCCTTGTC+AGG | 0.505076 | 5_4:-12712705 | None:intergenic |
| GCTTCAGGGAAAGTACAGTT+GGG | 0.506385 | 5_4:-12712756 | None:intergenic |
| AACCGGAGGTTCATATCAGC+AGG | 0.512000 | 5_4:+12713228 | Msa0838340:CDS |
| ATGTTGTGTAGCTTCTAGAT+TGG | 0.522186 | 5_4:+12715550 | Msa0838340:three_prime_UTR |
| TTCTCTCCATTCTTGTACAA+GGG | 0.527375 | 5_4:-12715032 | None:intergenic |
| GGTAATGTCGCAGTGGCACC+CGG | 0.527495 | 5_4:-12715667 | None:intergenic |
| CTCAGAGAAGATGGCGTCGT+GGG | 0.529686 | 5_4:+12709912 | Msa0838340:intron |
| TTCCTGCTGATATGAACCTC+CGG | 0.532068 | 5_4:-12713230 | None:intergenic |
| AGACATTATGTAGAGGCTAC+TGG | 0.533396 | 5_4:+12715449 | Msa0838340:three_prime_UTR |
| GTAGATGCTGTGAAGTTGAT+TGG | 0.535227 | 5_4:+12709976 | Msa0838340:CDS |
| CTCTGAGCTGAAGAGGTACC+CGG | 0.535961 | 5_4:+12710104 | Msa0838340:CDS |
| GGAGAGAAGTGGAGATCCGT+GGG | 0.536935 | 5_4:+12715047 | Msa0838340:CDS |
| TCCATGTACTGGATAGGTGG+AGG | 0.545948 | 5_4:-12715370 | None:intergenic |
| TGGCGTCGTGGGAACATATG+GGG | 0.551313 | 5_4:+12709923 | Msa0838340:CDS |
| GGTTATTGAACATGATCAGC+GGG | 0.551617 | 5_4:+12712626 | Msa0838340:CDS |
| AAGACATTCTTCTATCCTTG+TGG | 0.553618 | 5_4:+12713965 | Msa0838340:CDS |
| TTGTCCACAAGAGTGATAAG+AGG | 0.560131 | 5_4:-12710294 | None:intergenic |
| GAAGAGGTACCCGGAAACTA+GGG | 0.561185 | 5_4:+12710113 | Msa0838340:CDS |
| TAAGATTCCATGTACTGGAT+AGG | 0.565338 | 5_4:-12715376 | None:intergenic |
| GCATCTTCAAGCTGCTCCAG+AGG | 0.575225 | 5_4:-12710138 | None:intergenic |
| GTTGTGCCCTTGTACAAGAA+TGG | 0.575953 | 5_4:+12715026 | Msa0838340:CDS |
| GATTCCATGTACTGGATAGG+TGG | 0.585710 | 5_4:-12715373 | None:intergenic |
| AGCTTGAAGATGCACTCAGA+AGG | 0.586177 | 5_4:+12710148 | Msa0838340:CDS |
| AGCTTAACCTAGAGCTACAA+AGG | 0.587180 | 5_4:+12712799 | Msa0838340:CDS |
| TCAAGATCTCTGAGCTGAAG+AGG | 0.593903 | 5_4:+12710097 | Msa0838340:CDS |
| AAATAACTGTGTGCGCCTGT+TGG | 0.596782 | 5_4:-12712671 | None:intergenic |
| TGGAGAGAAGTGGAGATCCG+TGG | 0.601083 | 5_4:+12715046 | Msa0838340:CDS |
| TTTAAAACCTGATCCTGACA+AGG | 0.603010 | 5_4:+12712692 | Msa0838340:CDS |
| GGAGAGAACATACAAAGAGA+AGG | 0.604050 | 5_4:-12713289 | None:intergenic |
| TGTATTTGTTGGCAATGGGA+TGG | 0.606590 | 5_4:+12710211 | Msa0838340:CDS |
| TGTACAAGAATGGAGAGAAG+TGG | 0.606865 | 5_4:+12715036 | Msa0838340:CDS |
| GCTCATTCAGGAGAGACTTG+AGG | 0.619148 | 5_4:+12712605 | Msa0838340:intron |
| CCATGTACTGGATAGGTGGA+GGG | 0.623104 | 5_4:-12715369 | None:intergenic |
| ACAGTGAGAACCAAAATACA+TGG | 0.626903 | 5_4:-12715494 | None:intergenic |
| TATTGTTTATCAGTTCAGGA+AGG | 0.633802 | 5_4:+12710236 | Msa0838340:CDS |
| ATCTTTGAAAATGTTCCACA+AGG | 0.635888 | 5_4:-12713980 | None:intergenic |
| TCCTAAAAGACATTATGTAG+AGG | 0.638908 | 5_4:+12715442 | Msa0838340:three_prime_UTR |
| GGCGTCGTGGGAACATATGG+GGG | 0.639992 | 5_4:+12709924 | Msa0838340:CDS |
| TGTGGACAATGCTAGAGTCA+GGG | 0.641994 | 5_4:+12710308 | Msa0838340:CDS |
| TCTCAGAGAAGATGGCGTCG+TGG | 0.648065 | 5_4:+12709911 | Msa0838340:intron |
| AAAACCTGATCCTGACAAGG+AGG | 0.668934 | 5_4:+12712695 | Msa0838340:CDS |
| TCTGATGCCAATGATGACAA+TGG | 0.675518 | 5_4:+12712954 | Msa0838340:CDS |
| GGAATACACATTAGACGATG+AGG | 0.676469 | 5_4:+12712647 | Msa0838340:CDS |
| AGGTTATTGAACATGATCAG+CGG | 0.676879 | 5_4:+12712625 | Msa0838340:CDS |
| AAGACATACCACTAACCCCA+CGG | 0.680905 | 5_4:-12715063 | None:intergenic |
| TGATAAGAGGAACAAGACGT+AGG | 0.682558 | 5_4:-12710281 | None:intergenic |
| CTTCAGGGAAAGTACAGTTG+GGG | 0.689261 | 5_4:-12712755 | None:intergenic |
| TGAAAGCTGCAAGTACTGCA+AGG | 0.698868 | 5_4:+12710007 | Msa0838340:CDS |
| AAGGACGTGATGTCAACCGG+AGG | 0.738813 | 5_4:+12713214 | Msa0838340:CDS |
| GAGAGAAGTGGAGATCCGTG+GGG | 0.788408 | 5_4:+12715048 | Msa0838340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAATAATTAAAAAGA+AGG | - | chr5_4:12709262-12709281 | None:intergenic | 10.0% |
| !!! | ATTTTTTAAGGTTTAATTTT+TGG | + | chr5_4:12709397-12709416 | Msa0838340:intron | 10.0% |
| !!! | TTATTAATATTTTGTTTTCA+TGG | + | chr5_4:12715580-12715599 | Msa0838340:three_prime_UTR | 10.0% |
| !!! | TTCCTTTTCTTTATTTTTTA+AGG | + | chr5_4:12709385-12709404 | Msa0838340:intron | 15.0% |
| !! | AACCTTAAAAAATAAAGAAA+AGG | - | chr5_4:12709390-12709409 | None:intergenic | 15.0% |
| !! | AAAGATTTGATTAAGAAAAT+AGG | + | chr5_4:12710651-12710670 | Msa0838340:intron | 15.0% |
| !! | TTTATTAGAACAATTCAATT+AGG | + | chr5_4:12710923-12710942 | Msa0838340:intron | 15.0% |
| !! | TAATTAAAACATACATGAAT+TGG | + | chr5_4:12711183-12711202 | Msa0838340:intron | 15.0% |
| !! | AGAAAATGAAAATTAATAAG+TGG | - | chr5_4:12711650-12711669 | None:intergenic | 15.0% |
| !!! | CTTATTAATTTTCATTTTCT+TGG | + | chr5_4:12711650-12711669 | Msa0838340:intron | 15.0% |
| !!! | ATTAAGTAGTTTAGTTTTTT+TGG | + | chr5_4:12711916-12711935 | Msa0838340:intron | 15.0% |
| !!! | ATAACATATAAAGCTTTTTA+TGG | + | chr5_4:12714540-12714559 | Msa0838340:intron | 15.0% |
| !! | CAATAAAATTACGATAAAAA+AGG | + | chr5_4:12714871-12714890 | Msa0838340:intron | 15.0% |
| !! | TATGAAATATTTAAAAAGAC+TGG | - | chr5_4:12714937-12714956 | None:intergenic | 15.0% |
| !!! | TTACTATGAAATATTTTTGT+AGG | + | chr5_4:12715248-12715267 | Msa0838340:intron | 15.0% |
| !! | ACTATACATACATAATTTAA+AGG | - | chr5_4:12715526-12715545 | None:intergenic | 15.0% |
| !!! | AGGTTTAATTTTTGGTAATT+AGG | + | chr5_4:12709405-12709424 | Msa0838340:intron | 20.0% |
| !!! | ATTGTTATTTGCTTAATCAA+AGG | + | chr5_4:12709570-12709589 | Msa0838340:intron | 20.0% |
| !!! | TTTTGATGCATGTTTTTTTT+AGG | + | chr5_4:12709636-12709655 | Msa0838340:intron | 20.0% |
| !!! | ATTTTTGTTATTGTTGTTGA+TGG | + | chr5_4:12709666-12709685 | Msa0838340:intron | 20.0% |
| !!! | TAACTTTGATGCATTTTTTT+TGG | + | chr5_4:12709776-12709795 | Msa0838340:intron | 20.0% |
| !!! | AACTTTGATGCATTTTTTTT+GGG | + | chr5_4:12709777-12709796 | Msa0838340:intron | 20.0% |
| !!! | TTTGTGATTTTCTACTAATT+TGG | + | chr5_4:12710413-12710432 | Msa0838340:intron | 20.0% |
| !!! | TTGTGATTTTCTACTAATTT+GGG | + | chr5_4:12710414-12710433 | Msa0838340:intron | 20.0% |
| !! | GTCAATTTCGTTATATAATT+AGG | + | chr5_4:12710554-12710573 | Msa0838340:intron | 20.0% |
| !! | TTGAATTGTTCTAATAAACA+GGG | - | chr5_4:12710921-12710940 | None:intergenic | 20.0% |
| !! | ATTGAATTGTTCTAATAAAC+AGG | - | chr5_4:12710922-12710941 | None:intergenic | 20.0% |
| !! | AACTACTTAATATAGTTATC+TGG | - | chr5_4:12711907-12711926 | None:intergenic | 20.0% |
| !! | TTTGTTTAAATAGCATTTGA+CGG | + | chr5_4:12712058-12712077 | Msa0838340:intron | 20.0% |
| !!! | TATTATTTTCTGTCATGATA+AGG | + | chr5_4:12712199-12712218 | Msa0838340:intron | 20.0% |
| !! | ATAGTACTGCTTATTAAAAA+GGG | - | chr5_4:12712344-12712363 | None:intergenic | 20.0% |
| !! | TATAGTACTGCTTATTAAAA+AGG | - | chr5_4:12712345-12712364 | None:intergenic | 20.0% |
| !!! | ATTAATCTTCCTTACTATTT+TGG | + | chr5_4:12713123-12713142 | Msa0838340:intron | 20.0% |
| !!! | AAACTTTTAAAATATCAAGC+AGG | - | chr5_4:12713313-12713332 | None:intergenic | 20.0% |
| !!! | TGCTTGATATTTTAAAAGTT+TGG | + | chr5_4:12713312-12713331 | Msa0838340:intron | 20.0% |
| !! | ATAATTCATGAGAGTAATTA+GGG | - | chr5_4:12713466-12713485 | None:intergenic | 20.0% |
| !!! | ATACGATGATTTTTTTAACT+AGG | + | chr5_4:12713678-12713697 | Msa0838340:intron | 20.0% |
| !! | GAATATTGAATTAGATTAGA+TGG | + | chr5_4:12713720-12713739 | Msa0838340:intron | 20.0% |
| !!! | CTGTTTTACTAAAAACATAA+GGG | - | chr5_4:12713812-12713831 | None:intergenic | 20.0% |
| !!! | TCTGTTTTACTAAAAACATA+AGG | - | chr5_4:12713813-12713832 | None:intergenic | 20.0% |
| !! | TTTAGTAAAACAGAAAGATA+AGG | + | chr5_4:12713819-12713838 | Msa0838340:intron | 20.0% |
| !! | TAAGAAAATCAACTAAAGAT+AGG | + | chr5_4:12713880-12713899 | Msa0838340:intron | 20.0% |
| !!! | TACTTTTCATTCTTAGTAAT+TGG | + | chr5_4:12713918-12713937 | Msa0838340:intron | 20.0% |
| !! | TGAAATGAATACAATTTACA+CGG | - | chr5_4:12714583-12714602 | None:intergenic | 20.0% |
| !! | TGATAAGAAATAACCATTTA+GGG | - | chr5_4:12715282-12715301 | None:intergenic | 20.0% |
| !! | TTGATAAGAAATAACCATTT+AGG | - | chr5_4:12715283-12715302 | None:intergenic | 20.0% |
| ! | TGCAGAAAAAATCTTAAGAA+TGG | - | chr5_4:12709549-12709568 | None:intergenic | 25.0% |
| !! | TGTGATTTTCTACTAATTTG+GGG | + | chr5_4:12710415-12710434 | Msa0838340:intron | 25.0% |
| ! | TTTACTACTTCGATAGTATT+TGG | - | chr5_4:12710496-12710515 | None:intergenic | 25.0% |
| !!! | TTTATTTTTAGTTTGCCACT+AGG | + | chr5_4:12710587-12710606 | Msa0838340:intron | 25.0% |
| !! | AATCGTTTGTTAGTGATAAT+AGG | - | chr5_4:12710881-12710900 | None:intergenic | 25.0% |
| ! | AACATACATGAATTGGTAAA+AGG | + | chr5_4:12711190-12711209 | Msa0838340:intron | 25.0% |
| ! | TCTGTCATTACGTAATATTA+GGG | - | chr5_4:12711536-12711555 | None:intergenic | 25.0% |
| ! | TTCTGTCATTACGTAATATT+AGG | - | chr5_4:12711537-12711556 | None:intergenic | 25.0% |
| !! | GGAAGCATGTAATATATATT+AGG | + | chr5_4:12712220-12712239 | Msa0838340:intron | 25.0% |
| ! | AATTTCAATCACATTGTTTC+TGG | + | chr5_4:12712452-12712471 | Msa0838340:intron | 25.0% |
| !!! | TTTCTTTTTTAATCGCTTCA+GGG | - | chr5_4:12712773-12712792 | None:intergenic | 25.0% |
| !!! | TTTTCTTTTTTAATCGCTTC+AGG | - | chr5_4:12712774-12712793 | None:intergenic | 25.0% |
| ! | TGAAGCGATTAAAAAAGAAA+AGG | + | chr5_4:12712773-12712792 | Msa0838340:CDS | 25.0% |
| !!! | TCTTTCTTATGACTTTTTTC+AGG | - | chr5_4:12712921-12712940 | None:intergenic | 25.0% |
| ! | AATTATGATTTCTGCTTAAC+TGG | - | chr5_4:12713089-12713108 | None:intergenic | 25.0% |
| ! | AGTTAATGACCAAAATAGTA+AGG | - | chr5_4:12713135-12713154 | None:intergenic | 25.0% |
| ! | GATATATTACCTGTACATTA+TGG | + | chr5_4:12713365-12713384 | Msa0838340:intron | 25.0% |
| ! | TAATTCATGAGAGTAATTAG+GGG | - | chr5_4:12713465-12713484 | None:intergenic | 25.0% |
| ! | CATAATTCATGAGAGTAATT+AGG | - | chr5_4:12713467-12713486 | None:intergenic | 25.0% |
| ! | GTAACACTTATATATGTCTT+GGG | - | chr5_4:12713498-12713517 | None:intergenic | 25.0% |
| ! | TGTAACACTTATATATGTCT+TGG | - | chr5_4:12713499-12713518 | None:intergenic | 25.0% |
| ! | AAGACATATATAAGTGTTAC+AGG | + | chr5_4:12713498-12713517 | Msa0838340:intron | 25.0% |
| ! | TAATTGAGTGAGTCAAAATT+TGG | - | chr5_4:12713599-12713618 | None:intergenic | 25.0% |
| !! | AATGAAAAGTATAGAGAGAT+TGG | - | chr5_4:12713909-12713928 | None:intergenic | 25.0% |
| ! | TTAGTAATTGGTATAGCATT+TGG | + | chr5_4:12713930-12713949 | Msa0838340:intron | 25.0% |
| ! | AAGATAGCTAACTTACAAAT+GGG | - | chr5_4:12714028-12714047 | None:intergenic | 25.0% |
| ! | TAGAAATTAGTGAATCAAGT+TGG | + | chr5_4:12714108-12714127 | Msa0838340:intron | 25.0% |
| ! | GAAAATCATGTCTTCATTAT+AGG | - | chr5_4:12714155-12714174 | None:intergenic | 25.0% |
| !!! | TTTTATGGTACCATTTTTTG+TGG | + | chr5_4:12714555-12714574 | Msa0838340:intron | 25.0% |
| !! | TCGTAATTTTATTGTGTTGT+AGG | - | chr5_4:12714865-12714884 | None:intergenic | 25.0% |
| ! | ATAGTAAGATGAAGAATACA+TGG | - | chr5_4:12715213-12715232 | None:intergenic | 25.0% |
| !! | ACAATGTCATTTAGTTGTTT+AGG | + | chr5_4:12715410-12715429 | Msa0838340:three_prime_UTR | 25.0% |
| !! | CAATGTCATTTAGTTGTTTA+GGG | + | chr5_4:12715411-12715430 | Msa0838340:three_prime_UTR | 25.0% |
| TAGTGAAAGTTATTACTTGC+AGG | - | chr5_4:12709126-12709145 | None:intergenic | 30.0% | |
| AGCATGAAAATTGAAATCCA+TGG | - | chr5_4:12709318-12709337 | None:intergenic | 30.0% | |
| ! | ATGGATTTCAATTTTCATGC+TGG | + | chr5_4:12709317-12709336 | Msa0838340:intron | 30.0% |
| !! | TTGAAGGATAATGCTATTTC+AGG | + | chr5_4:12709481-12709500 | Msa0838340:intron | 30.0% |
| !! | AATGCAATTTTGACGCTATA+AGG | + | chr5_4:12709720-12709739 | Msa0838340:intron | 30.0% |
| ! | CAATGCATTTGAAGTTGATT+GGG | + | chr5_4:12710058-12710077 | Msa0838340:CDS | 30.0% |
| GGAATATTGTTTATCAGTTC+AGG | + | chr5_4:12710232-12710251 | Msa0838340:CDS | 30.0% | |
| TATTGTTTATCAGTTCAGGA+AGG | + | chr5_4:12710236-12710255 | Msa0838340:CDS | 30.0% | |
| TAGAGTAATTGATAGACGTT+TGG | + | chr5_4:12710462-12710481 | Msa0838340:intron | 30.0% | |
| AATCATCGTAAACTAGAAGA+GGG | - | chr5_4:12710751-12710770 | None:intergenic | 30.0% | |
| TAATCATCGTAAACTAGAAG+AGG | - | chr5_4:12710752-12710771 | None:intergenic | 30.0% | |
| AAGAATTATTAGACCACCTA+AGG | - | chr5_4:12710837-12710856 | None:intergenic | 30.0% | |
| AGTGATAATAGGTTAACGTT+CGG | - | chr5_4:12710870-12710889 | None:intergenic | 30.0% | |
| TGCAGTATTTATAGAAGTCA+TGG | + | chr5_4:12711300-12711319 | Msa0838340:intron | 30.0% | |
| GCAGTATTTATAGAAGTCAT+GGG | + | chr5_4:12711301-12711320 | Msa0838340:intron | 30.0% | |
| AATACACACTTCCTGTAAAA+GGG | - | chr5_4:12711378-12711397 | None:intergenic | 30.0% | |
| AAATACACACTTCCTGTAAA+AGG | - | chr5_4:12711379-12711398 | None:intergenic | 30.0% | |
| ! | AAAATTTGAAGTCTGTTCGA+AGG | - | chr5_4:12711449-12711468 | None:intergenic | 30.0% |
| TCATGCAATTTATACTGTTC+TGG | - | chr5_4:12711486-12711505 | None:intergenic | 30.0% | |
| AAGCATATTGAGTGAGTAAT+TGG | + | chr5_4:12711587-12711606 | Msa0838340:intron | 30.0% | |
| ATTCCTGGTTTATGAAAATC+TGG | + | chr5_4:12711842-12711861 | Msa0838340:intron | 30.0% | |
| TTCCTGGTTTATGAAAATCT+GGG | + | chr5_4:12711843-12711862 | Msa0838340:intron | 30.0% | |
| !!! | ATGTTTTAGTTGCATCTTTG+TGG | + | chr5_4:12712277-12712296 | Msa0838340:intron | 30.0% |
| AGCAGTACTATATAAAGAAG+TGG | + | chr5_4:12712353-12712372 | Msa0838340:intron | 30.0% | |
| TTGCTCAATTGATTACAACT+TGG | - | chr5_4:12712383-12712402 | None:intergenic | 30.0% | |
| CATATTTCCCTACATTTGTA+AGG | + | chr5_4:12712481-12712500 | Msa0838340:intron | 30.0% | |
| TCTAAGTCCTTACAAATGTA+GGG | - | chr5_4:12712491-12712510 | None:intergenic | 30.0% | |
| AGTTAGTGACAATATAACAC+AGG | - | chr5_4:12712514-12712533 | None:intergenic | 30.0% | |
| ACCAACCAAATTTACACATT+CGG | - | chr5_4:12712554-12712573 | None:intergenic | 30.0% | |
| AGTCATTCAACGTTTATTAG+AGG | + | chr5_4:12712854-12712873 | Msa0838340:intron | 30.0% | |
| TGAAAAATACCATGCAAAAG+TGG | + | chr5_4:12712989-12713008 | Msa0838340:CDS | 30.0% | |
| ! | TAACTTATATCGACTGTGTT+TGG | + | chr5_4:12713150-12713169 | Msa0838340:intron | 30.0% |
| TGACATAATGAAAATGCACA+AGG | - | chr5_4:12713425-12713444 | None:intergenic | 30.0% | |
| TTTACCTTACAAGTTAACTC+AGG | + | chr5_4:12713743-12713762 | Msa0838340:intron | 30.0% | |
| !!! | AGGGTTTTTTAATGTTCAGT+GGG | - | chr5_4:12713793-12713812 | None:intergenic | 30.0% |
| !!! | AAGGGTTTTTTAATGTTCAG+TGG | - | chr5_4:12713794-12713813 | None:intergenic | 30.0% |
| ! | CATGTTTTTCTTCTGTTCAT+AGG | - | chr5_4:12713847-12713866 | None:intergenic | 30.0% |
| CTATGAACAGAAGAAAAACA+TGG | + | chr5_4:12713845-12713864 | Msa0838340:intron | 30.0% | |
| ! | ATCTTTGAAAATGTTCCACA+AGG | - | chr5_4:12713983-12714002 | None:intergenic | 30.0% |
| TTGCTACAGTTGTAAAAAAC+AGG | + | chr5_4:12714002-12714021 | Msa0838340:intron | 30.0% | |
| CAAGATAGCTAACTTACAAA+TGG | - | chr5_4:12714029-12714048 | None:intergenic | 30.0% | |
| TAACTTATGAGATAATGCCA+AGG | + | chr5_4:12714195-12714214 | Msa0838340:intron | 30.0% | |
| AACTTATGAGATAATGCCAA+GGG | + | chr5_4:12714196-12714215 | Msa0838340:intron | 30.0% | |
| ! | TATGTTGCTTATATTCTCAC+TGG | + | chr5_4:12714224-12714243 | Msa0838340:intron | 30.0% |
| CAAACACTAAAACATTATCG+AGG | + | chr5_4:12714275-12714294 | Msa0838340:intron | 30.0% | |
| ! | AGAAGCATGTAATGAATTGA+TGG | + | chr5_4:12714338-12714357 | Msa0838340:intron | 30.0% |
| AACAAGTCATATTTATGCAG+AGG | - | chr5_4:12714459-12714478 | None:intergenic | 30.0% | |
| TATAAAAATCCACAAACACG+AGG | - | chr5_4:12714496-12714515 | None:intergenic | 30.0% | |
| CGTGTATATGAAAATAGTTG+TGG | - | chr5_4:12714631-12714650 | None:intergenic | 30.0% | |
| ! | TAACTTGTGACTTCTAATCT+AGG | - | chr5_4:12714806-12714825 | None:intergenic | 30.0% |
| ! | AAGGTATTTGTTAAGACTTG+AGG | + | chr5_4:12714890-12714909 | Msa0838340:intron | 30.0% |
| AGTACAGTAAGATGAAGAAT+AGG | - | chr5_4:12715090-12715109 | None:intergenic | 30.0% | |
| ATTTCTTATCAATGCTCAAG+TGG | + | chr5_4:12715291-12715310 | Msa0838340:intron | 30.0% | |
| ! | TTGATATTTAACCGTTTTGC+AGG | + | chr5_4:12715325-12715344 | Msa0838340:intron | 30.0% |
| TTACTTAAGATTCCATGTAC+TGG | - | chr5_4:12715384-12715403 | None:intergenic | 30.0% | |
| TTTAGTTGTTTAGGGATTCA+AGG | + | chr5_4:12715419-12715438 | Msa0838340:three_prime_UTR | 30.0% | |
| TCCTAAAAGACATTATGTAG+AGG | + | chr5_4:12715442-12715461 | Msa0838340:three_prime_UTR | 30.0% | |
| ! | CGTGAAAAAGCATAGAATTC+AGG | - | chr5_4:12709087-12709106 | None:intergenic | 35.0% |
| ACTTGCAGGAAATTGAAGAA+GGG | - | chr5_4:12709112-12709131 | None:intergenic | 35.0% | |
| TACTTGCAGGAAATTGAAGA+AGG | - | chr5_4:12709113-12709132 | None:intergenic | 35.0% | |
| ! | CAATTTCTCTAGTTTAGCCA+TGG | + | chr5_4:12709298-12709317 | Msa0838340:intron | 35.0% |
| TACAGTGTTCAAGATCTTGA+AGG | + | chr5_4:12709465-12709484 | Msa0838340:intron | 35.0% | |
| ! | AAGAATGGAAGATTTGAAGC+TGG | - | chr5_4:12709534-12709553 | None:intergenic | 35.0% |
| ! | GCAATGCATTTGAAGTTGAT+TGG | + | chr5_4:12710057-12710076 | Msa0838340:CDS | 35.0% |
| ! | ACTCAGAAGGTCTTATATGT+TGG | + | chr5_4:12710161-12710180 | Msa0838340:intron | 35.0% |
| TCGAAGTTACCTGTATTTGT+TGG | + | chr5_4:12710200-12710219 | Msa0838340:CDS | 35.0% | |
| ! | TTACCTGTATTTGTTGGCAA+TGG | + | chr5_4:12710206-12710225 | Msa0838340:CDS | 35.0% |
| ! | TACCTGTATTTGTTGGCAAT+GGG | + | chr5_4:12710207-12710226 | Msa0838340:CDS | 35.0% |
| AAGTTAAAAACAGTCCTCGT+GGG | - | chr5_4:12710528-12710547 | None:intergenic | 35.0% | |
| GAAGAGGGTTCATAACAAAT+AGG | - | chr5_4:12710736-12710755 | None:intergenic | 35.0% | |
| CTAACTCAAGGGATTGATTA+GGG | - | chr5_4:12710784-12710803 | None:intergenic | 35.0% | |
| TTAGACCACCTAAGGAATTA+GGG | - | chr5_4:12710829-12710848 | None:intergenic | 35.0% | |
| ATTAGACCACCTAAGGAATT+AGG | - | chr5_4:12710830-12710849 | None:intergenic | 35.0% | |
| GGTGGTCTAATAATTCTTGA+AGG | + | chr5_4:12710839-12710858 | Msa0838340:intron | 35.0% | |
| !! | CTAATAAACAGGGTTAGTCT+AGG | - | chr5_4:12710911-12710930 | None:intergenic | 35.0% |
| ACAGCAACATGTGTCAATTA+GGG | + | chr5_4:12711079-12711098 | Msa0838340:intron | 35.0% | |
| ! | AAGAACAAGGGTTACGATTT+TGG | - | chr5_4:12711271-12711290 | None:intergenic | 35.0% |
| TTGAGTGAGTAATTGGCAAA+TGG | + | chr5_4:12711594-12711613 | Msa0838340:intron | 35.0% | |
| AGGGCTATCTAGTAAATAAG+TGG | - | chr5_4:12711760-12711779 | None:intergenic | 35.0% | |
| ACTTATTTACTAGATAGCCC+TGG | + | chr5_4:12711759-12711778 | Msa0838340:intron | 35.0% | |
| ! | CCAGGAATTTTCATTTCACT+GGG | - | chr5_4:12711830-12711849 | None:intergenic | 35.0% |
| ! | ACCAGGAATTTTCATTTCAC+TGG | - | chr5_4:12711831-12711850 | None:intergenic | 35.0% |
| ! | ATCCCAGATTTTCATAAACC+AGG | - | chr5_4:12711848-12711867 | None:intergenic | 35.0% |
| TCCTAGCTACTATGCATAAA+TGG | + | chr5_4:12711963-12711982 | Msa0838340:intron | 35.0% | |
| CCTAGCTACTATGCATAAAT+GGG | + | chr5_4:12711964-12711983 | Msa0838340:intron | 35.0% | |
| TGTTCATGTATGCAGAAGAA+GGG | - | chr5_4:12712156-12712175 | None:intergenic | 35.0% | |
| TTGTTCATGTATGCAGAAGA+AGG | - | chr5_4:12712157-12712176 | None:intergenic | 35.0% | |
| TAGGATTCAACTCATTTGTC+AGG | + | chr5_4:12712239-12712258 | Msa0838340:intron | 35.0% | |
| CCAAAACCAACTCTATCTAA+AGG | - | chr5_4:12712304-12712323 | None:intergenic | 35.0% | |
| !! | CCTTTAGATAGAGTTGGTTT+TGG | + | chr5_4:12712301-12712320 | Msa0838340:intron | 35.0% |
| !!! | GATAGAGTTGGTTTTGGTTT+TGG | + | chr5_4:12712307-12712326 | Msa0838340:intron | 35.0% |
| ACATCTCTCACAAACATGAT+TGG | - | chr5_4:12712411-12712430 | None:intergenic | 35.0% | |
| GTCTAAGTCCTTACAAATGT+AGG | - | chr5_4:12712492-12712511 | None:intergenic | 35.0% | |
| AGCATCCGAATGTGTAAATT+TGG | + | chr5_4:12712546-12712565 | Msa0838340:intron | 35.0% | |
| TCCGAATGTGTAAATTTGGT+TGG | + | chr5_4:12712550-12712569 | Msa0838340:intron | 35.0% | |
| !! | AATTGCTTTTGTGCTCATTC+AGG | + | chr5_4:12712593-12712612 | Msa0838340:intron | 35.0% |
| AGGTTATTGAACATGATCAG+CGG | + | chr5_4:12712625-12712644 | Msa0838340:CDS | 35.0% | |
| ! | TTTAAAACCTGATCCTGACA+AGG | + | chr5_4:12712692-12712711 | Msa0838340:CDS | 35.0% |
| ACAAAGGTCACAAGCAAATT+TGG | + | chr5_4:12712815-12712834 | Msa0838340:CDS | 35.0% | |
| TGAAAGACCATTGTCATCAT+TGG | - | chr5_4:12712964-12712983 | None:intergenic | 35.0% | |
| !!! | AAAGAGTATCCACTTTTGCA+TGG | - | chr5_4:12713001-12713020 | None:intergenic | 35.0% |
| !! | GTGTTTGGTGCTTATATACA+TGG | + | chr5_4:12713165-12713184 | Msa0838340:intron | 35.0% |
| CAGATATTCTGTTTCCCAAA+AGG | + | chr5_4:12713195-12713214 | Msa0838340:intron | 35.0% | |
| GAACATACAAAGAGAAGGTT+CGG | - | chr5_4:12713287-12713306 | None:intergenic | 35.0% | |
| AATAGCGAACCATAATGTAC+AGG | - | chr5_4:12713377-12713396 | None:intergenic | 35.0% | |
| AATTAGCCCTTATGTCTTTG+TGG | + | chr5_4:12713614-12713633 | Msa0838340:intron | 35.0% | |
| AAGACATTCTTCTATCCTTG+TGG | + | chr5_4:12713965-12713984 | Msa0838340:CDS | 35.0% | |
| ! | GTTGCTATACTTGTTGCATT+AGG | + | chr5_4:12714385-12714404 | Msa0838340:intron | 35.0% |
| TATTTATGCAGAGGAAAGGA+AGG | - | chr5_4:12714450-12714469 | None:intergenic | 35.0% | |
| GTCATATTTATGCAGAGGAA+AGG | - | chr5_4:12714454-12714473 | None:intergenic | 35.0% | |
| ATAATGTATTTGTCGAGCCT+TGG | + | chr5_4:12714753-12714772 | Msa0838340:intron | 35.0% | |
| ! | TTAATCGCAGTTACTTTCCA+TGG | + | chr5_4:12714957-12714976 | Msa0838340:intron | 35.0% |
| TTCTCTCCATTCTTGTACAA+GGG | - | chr5_4:12715035-12715054 | None:intergenic | 35.0% | |
| ATTGAACAGCTTGCATGATA+AGG | - | chr5_4:12715143-12715162 | None:intergenic | 35.0% | |
| ! | AATTTTACAGCAAGTGCAAC+AGG | - | chr5_4:12715175-12715194 | None:intergenic | 35.0% |
| AGATGAAGAATACATGGTTC+TGG | - | chr5_4:12715207-12715226 | None:intergenic | 35.0% | |
| !! | GTAGGTTTTTAAGCCCTAAA+TGG | + | chr5_4:12715266-12715285 | Msa0838340:intron | 35.0% |
| TAAGATTCCATGTACTGGAT+AGG | - | chr5_4:12715379-12715398 | None:intergenic | 35.0% | |
| ! | GCCTCTACATAATGTCTTTT+AGG | - | chr5_4:12715446-12715465 | None:intergenic | 35.0% |
| ! | AAGGCAAGAACCATGTATTT+TGG | + | chr5_4:12715484-12715503 | Msa0838340:three_prime_UTR | 35.0% |
| ACAGTGAGAACCAAAATACA+TGG | - | chr5_4:12715497-12715516 | None:intergenic | 35.0% | |
| ATGTTGTGTAGCTTCTAGAT+TGG | + | chr5_4:12715550-12715569 | Msa0838340:three_prime_UTR | 35.0% | |
| ! | AGCTGATGTGGCTTGATTTT+AGG | + | chr5_4:12709883-12709902 | Msa0838340:intron | 40.0% |
| ! | AGGTTGATTCTCAGAGAAGA+TGG | + | chr5_4:12709903-12709922 | Msa0838340:intron | 40.0% |
| GCAAATATAGCGCAATTGAC+TGG | + | chr5_4:12709952-12709971 | Msa0838340:CDS | 40.0% | |
| ! | GTAGATGCTGTGAAGTTGAT+TGG | + | chr5_4:12709976-12709995 | Msa0838340:CDS | 40.0% |
| ! | GAAGTTGATTGGGAACTTGT+TGG | + | chr5_4:12710068-12710087 | Msa0838340:CDS | 40.0% |
| ATCCCATTGCCAACAAATAC+AGG | - | chr5_4:12710212-12710231 | None:intergenic | 40.0% | |
| ! | TGTATTTGTTGGCAATGGGA+TGG | + | chr5_4:12710211-12710230 | Msa0838340:CDS | 40.0% |
| TGATAAGAGGAACAAGACGT+AGG | - | chr5_4:12710284-12710303 | None:intergenic | 40.0% | |
| TGTTCCTCTTATCACTCTTG+TGG | + | chr5_4:12710290-12710309 | Msa0838340:CDS | 40.0% | |
| TTGTCCACAAGAGTGATAAG+AGG | - | chr5_4:12710297-12710316 | None:intergenic | 40.0% | |
| TCTGCTATCTCTTGTGTGAA+TGG | + | chr5_4:12710342-12710361 | Msa0838340:intron | 40.0% | |
| GTAAAAATATCGTTCCCACG+AGG | + | chr5_4:12710511-12710530 | Msa0838340:intron | 40.0% | |
| GAAGTTAAAAACAGTCCTCG+TGG | - | chr5_4:12710529-12710548 | None:intergenic | 40.0% | |
| AAACCAAATCTTCTGCCTAG+TGG | - | chr5_4:12710605-12710624 | None:intergenic | 40.0% | |
| ATCCTCTAAGTTCCCCTAAT+TGG | + | chr5_4:12710701-12710720 | Msa0838340:intron | 40.0% | |
| TAGGTGCAGTAGACCAATTA+GGG | - | chr5_4:12710717-12710736 | None:intergenic | 40.0% | |
| ATAGGTGCAGTAGACCAATT+AGG | - | chr5_4:12710718-12710737 | None:intergenic | 40.0% | |
| CCTAACTCAAGGGATTGATT+AGG | - | chr5_4:12710785-12710804 | None:intergenic | 40.0% | |
| CCTAATCAATCCCTTGAGTT+AGG | + | chr5_4:12710782-12710801 | Msa0838340:intron | 40.0% | |
| TAGACCACCTAAGGAATTAG+GGG | - | chr5_4:12710828-12710847 | None:intergenic | 40.0% | |
| ! | TAGGTCTAAGTTGAAAGCCA+TGG | + | chr5_4:12710942-12710961 | Msa0838340:intron | 40.0% |
| CACAGCAACATGTGTCAATT+AGG | + | chr5_4:12711078-12711097 | Msa0838340:intron | 40.0% | |
| !!! | CGATTTTGAGACATCAGAGA+CGG | - | chr5_4:12711237-12711256 | None:intergenic | 40.0% |
| GCACTCAATCTGAAGAACAA+GGG | - | chr5_4:12711283-12711302 | None:intergenic | 40.0% | |
| TGCACTCAATCTGAAGAACA+AGG | - | chr5_4:12711284-12711303 | None:intergenic | 40.0% | |
| TTCCTGTAAAAGGGAAATCG+CGG | - | chr5_4:12711369-12711388 | None:intergenic | 40.0% | |
| TTGCTTCAAAAATCGCAGCA+CGG | + | chr5_4:12711399-12711418 | Msa0838340:intron | 40.0% | |
| ACTCACTCAATATGCTTGCA+TGG | - | chr5_4:12711584-12711603 | None:intergenic | 40.0% | |
| ATTTACTAGATAGCCCTGGT+CGG | + | chr5_4:12711763-12711782 | Msa0838340:intron | 40.0% | |
| CACCTGCCATACGAAAATAT+TGG | + | chr5_4:12711804-12711823 | Msa0838340:intron | 40.0% | |
| ! | ACTGGGCCAATATTTTCGTA+TGG | - | chr5_4:12711813-12711832 | None:intergenic | 40.0% |
| CCCAGTGAAATGAAAATTCC+TGG | + | chr5_4:12711827-12711846 | Msa0838340:intron | 40.0% | |
| CCCATTTATGCATAGTAGCT+AGG | - | chr5_4:12711967-12711986 | None:intergenic | 40.0% | |
| TGTGGTCCTTTAGATAGAGT+TGG | + | chr5_4:12712295-12712314 | Msa0838340:intron | 40.0% | |
| GGTTATTGAACATGATCAGC+GGG | + | chr5_4:12712626-12712645 | Msa0838340:CDS | 40.0% | |
| GGAATACACATTAGACGATG+AGG | + | chr5_4:12712647-12712666 | Msa0838340:CDS | 40.0% | |
| AGCTTAACCTAGAGCTACAA+AGG | + | chr5_4:12712799-12712818 | Msa0838340:CDS | 40.0% | |
| ! | AGTAGCAGAGTATTCTCTTC+CGG | + | chr5_4:12712884-12712903 | Msa0838340:CDS | 40.0% |
| !!! | TTTTCAGGTGAACACTTGTC+CGG | - | chr5_4:12712906-12712925 | None:intergenic | 40.0% |
| TCTGATGCCAATGATGACAA+TGG | + | chr5_4:12712954-12712973 | Msa0838340:CDS | 40.0% | |
| TGGATACTCTTTCGCAATCA+AGG | + | chr5_4:12713009-12713028 | Msa0838340:CDS | 40.0% | |
| TTTCCCTCTTCGACAACTTA+AGG | + | chr5_4:12713039-12713058 | Msa0838340:intron | 40.0% | |
| ! | ACACCTTAAGTTGTCGAAGA+GGG | - | chr5_4:12713045-12713064 | None:intergenic | 40.0% |
| ! | AACACCTTAAGTTGTCGAAG+AGG | - | chr5_4:12713046-12713065 | None:intergenic | 40.0% |
| GTTCATATCAGCAGGAAGAT+TGG | + | chr5_4:12713236-12713255 | Msa0838340:CDS | 40.0% | |
| GGAGAGAACATACAAAGAGA+AGG | - | chr5_4:12713292-12713311 | None:intergenic | 40.0% | |
| CACAAGCCACAAAGACATAA+GGG | - | chr5_4:12713623-12713642 | None:intergenic | 40.0% | |
| !! | CATGCCTGAGTTAACTTGTA+AGG | - | chr5_4:12713750-12713769 | None:intergenic | 40.0% |
| TCAGGCATGAGTAATTGTCA+AGG | + | chr5_4:12713761-12713780 | Msa0838340:intron | 40.0% | |
| TAAGCAACATAGAGAACCCT+TGG | - | chr5_4:12714215-12714234 | None:intergenic | 40.0% | |
| TTCATTACATGCTTCTGCAG+AGG | - | chr5_4:12714334-12714353 | None:intergenic | 40.0% | |
| GCAACAAGTATAGCAACAAC+AGG | - | chr5_4:12714382-12714401 | None:intergenic | 40.0% | |
| GTTGCATTAGGAGAAAGCTT+CGG | + | chr5_4:12714397-12714416 | Msa0838340:intron | 40.0% | |
| TTACACGGCACCACAAAAAA+TGG | - | chr5_4:12714568-12714587 | None:intergenic | 40.0% | |
| GACTTCTAATCTAGGTCACA+TGG | - | chr5_4:12714798-12714817 | None:intergenic | 40.0% | |
| CAAGTAGAGAGACAGTTTCA+AGG | - | chr5_4:12714832-12714851 | None:intergenic | 40.0% | |
| AACTGTCTCTCTACTTGTAG+AGG | + | chr5_4:12714835-12714854 | Msa0838340:intron | 40.0% | |
| CTTCTCTCCATTCTTGTACA+AGG | - | chr5_4:12715036-12715055 | None:intergenic | 40.0% | |
| TGTACAAGAATGGAGAGAAG+TGG | + | chr5_4:12715036-12715055 | Msa0838340:CDS | 40.0% | |
| ! | CATGATAAGGCACTTCAAAC+AGG | - | chr5_4:12715130-12715149 | None:intergenic | 40.0% |
| ! | ATTTAACCGTTTTGCAGGTG+CGG | + | chr5_4:12715330-12715349 | Msa0838340:intron | 40.0% |
| AGACATTATGTAGAGGCTAC+TGG | + | chr5_4:12715449-12715468 | Msa0838340:three_prime_UTR | 40.0% | |
| CTACTGGCATTCTAACTTGA+AGG | + | chr5_4:12715465-12715484 | Msa0838340:three_prime_UTR | 40.0% | |
| ! | ATTCCTAAGACGCATTTTGC+CGG | + | chr5_4:12715648-12715667 | Msa0838340:three_prime_UTR | 40.0% |
| ACTGATGTCTTGAGCTGATG+TGG | + | chr5_4:12709871-12709890 | Msa0838340:intron | 45.0% | |
| ! | TGAAAGCTGCAAGTACTGCA+AGG | + | chr5_4:12710007-12710026 | Msa0838340:CDS | 45.0% |
| TCAAGATCTCTGAGCTGAAG+AGG | + | chr5_4:12710097-12710116 | Msa0838340:CDS | 45.0% | |
| AGCTTGAAGATGCACTCAGA+AGG | + | chr5_4:12710148-12710167 | Msa0838340:CDS | 45.0% | |
| TTGTGGACAATGCTAGAGTC+AGG | + | chr5_4:12710307-12710326 | Msa0838340:CDS | 45.0% | |
| TGTGGACAATGCTAGAGTCA+GGG | + | chr5_4:12710308-12710327 | Msa0838340:CDS | 45.0% | |
| TTGCCACTAGGCAGAAGATT+TGG | + | chr5_4:12710599-12710618 | Msa0838340:intron | 45.0% | |
| GACCAATTAGGGGAACTTAG+AGG | - | chr5_4:12710706-12710725 | None:intergenic | 45.0% | |
| AGGTGCAGTAGACCAATTAG+GGG | - | chr5_4:12710716-12710735 | None:intergenic | 45.0% | |
| AGAAGAGGGTCCTAACTCAA+GGG | - | chr5_4:12710795-12710814 | None:intergenic | 45.0% | |
| AAGAAGAGGGTCCTAACTCA+AGG | - | chr5_4:12710796-12710815 | None:intergenic | 45.0% | |
| GGGGCTGTAGTTTAAGAAGA+GGG | - | chr5_4:12710809-12710828 | None:intergenic | 45.0% | |
| AGGGGCTGTAGTTTAAGAAG+AGG | - | chr5_4:12710810-12710829 | None:intergenic | 45.0% | |
| ACTACAGCCCCTAATTCCTT+AGG | + | chr5_4:12710818-12710837 | Msa0838340:intron | 45.0% | |
| AAGTTGAAAGCCATGGTCAG+TGG | + | chr5_4:12710949-12710968 | Msa0838340:intron | 45.0% | |
| GAATGAATGACCACTGACCA+TGG | - | chr5_4:12710962-12710981 | None:intergenic | 45.0% | |
| TGATGCCTAAGCCTAACTCT+GGG | + | chr5_4:12711675-12711694 | Msa0838340:intron | 45.0% | |
| CAAATCTTCCACCCAGAGTT+AGG | - | chr5_4:12711689-12711708 | None:intergenic | 45.0% | |
| TTTACTAGATAGCCCTGGTC+GGG | + | chr5_4:12711764-12711783 | Msa0838340:intron | 45.0% | |
| TTTAATAGCAGACCCGACCA+GGG | - | chr5_4:12711779-12711798 | None:intergenic | 45.0% | |
| ATTTAATAGCAGACCCGACC+AGG | - | chr5_4:12711780-12711799 | None:intergenic | 45.0% | |
| ! | GGCCAATATTTTCGTATGGC+AGG | - | chr5_4:12711809-12711828 | None:intergenic | 45.0% |
| ATTAGACGATGAGGACCAAC+AGG | + | chr5_4:12712656-12712675 | Msa0838340:CDS | 45.0% | |
| AAATAACTGTGTGCGCCTGT+TGG | - | chr5_4:12712674-12712693 | None:intergenic | 45.0% | |
| AAAACCTGATCCTGACAAGG+AGG | + | chr5_4:12712695-12712714 | Msa0838340:CDS | 45.0% | |
| AGTACAGTTGGGGTAAGAAC+AGG | - | chr5_4:12712748-12712767 | None:intergenic | 45.0% | |
| ! | CTTCAGGGAAAGTACAGTTG+GGG | - | chr5_4:12712758-12712777 | None:intergenic | 45.0% |
| ! | GCTTCAGGGAAAGTACAGTT+GGG | - | chr5_4:12712759-12712778 | None:intergenic | 45.0% |
| CTTGTGACCTTTGTAGCTCT+AGG | - | chr5_4:12712809-12712828 | None:intergenic | 45.0% | |
| GGTGCTTATATACATGGCCT+CGG | + | chr5_4:12713171-12713190 | Msa0838340:intron | 45.0% | |
| GGAAACAGAATATCTGTCCG+AGG | - | chr5_4:12713191-12713210 | None:intergenic | 45.0% | |
| ! | GGTTGACATCACGTCCTTTT+GGG | - | chr5_4:12713212-12713231 | None:intergenic | 45.0% |
| CAAAAGGACGTGATGTCAAC+CGG | + | chr5_4:12713211-12713230 | Msa0838340:CDS | 45.0% | |
| TTCCTGCTGATATGAACCTC+CGG | - | chr5_4:12713233-12713252 | None:intergenic | 45.0% | |
| GCACAAGCCACAAAGACATA+AGG | - | chr5_4:12713624-12713643 | None:intergenic | 45.0% | |
| TGGTATAGCATTTGGTCTGC+AGG | + | chr5_4:12713938-12713957 | Msa0838340:intron | 45.0% | |
| CACAAACACGAGGCATAAAG+AGG | - | chr5_4:12714486-12714505 | None:intergenic | 45.0% | |
| CTCTTTATGCCTCGTGTTTG+TGG | + | chr5_4:12714484-12714503 | Msa0838340:intron | 45.0% | |
| GTCTCTCTACTTGTAGAGGT+AGG | + | chr5_4:12714839-12714858 | Msa0838340:intron | 45.0% | |
| ! | TCGCAGTTACTTTCCATGGT+AGG | + | chr5_4:12714961-12714980 | Msa0838340:intron | 45.0% |
| ! | CGCAGTTACTTTCCATGGTA+GGG | + | chr5_4:12714962-12714981 | Msa0838340:intron | 45.0% |
| ! | GCAGTTACTTTCCATGGTAG+GGG | + | chr5_4:12714963-12714982 | Msa0838340:intron | 45.0% |
| ! | CAGTTACTTTCCATGGTAGG+GGG | + | chr5_4:12714964-12714983 | Msa0838340:intron | 45.0% |
| ! | AGTTACTTTCCATGGTAGGG+GGG | + | chr5_4:12714965-12714984 | Msa0838340:intron | 45.0% |
| GTTGTGCCCTTGTACAAGAA+TGG | + | chr5_4:12715026-12715045 | Msa0838340:CDS | 45.0% | |
| AAGACATACCACTAACCCCA+CGG | - | chr5_4:12715066-12715085 | None:intergenic | 45.0% | |
| GATTCCATGTACTGGATAGG+TGG | - | chr5_4:12715376-12715395 | None:intergenic | 45.0% | |
| ! | TTCCTAAGACGCATTTTGCC+GGG | + | chr5_4:12715649-12715668 | Msa0838340:three_prime_UTR | 45.0% |
| !! | AAAAATTATAAATGTAATTA+TGG | + | chr5_4:12709846-12709865 | Msa0838340:intron | 5.0% |
| ATGGCGTCGTGGGAACATAT+GGG | + | chr5_4:12709922-12709941 | Msa0838340:CDS | 50.0% | |
| !! | TGAAGAGGTACCCGGAAACT+AGG | + | chr5_4:12710112-12710131 | Msa0838340:CDS | 50.0% |
| !! | GAAGAGGTACCCGGAAACTA+GGG | + | chr5_4:12710113-12710132 | Msa0838340:CDS | 50.0% |
| GGGGAACTTAGAGGATTCGA+CGG | - | chr5_4:12710697-12710716 | None:intergenic | 50.0% | |
| ACAGCCCCTAATTCCTTAGG+TGG | + | chr5_4:12710821-12710840 | Msa0838340:intron | 50.0% | |
| AGACATCAGAGACGGCTAGA+AGG | - | chr5_4:12711229-12711248 | None:intergenic | 50.0% | |
| ! | TGCCGCGATTTCCCTTTTAC+AGG | + | chr5_4:12711364-12711383 | Msa0838340:intron | 50.0% |
| ATCGCAGCACGGCTTGAAAT+TGG | + | chr5_4:12711410-12711429 | Msa0838340:intron | 50.0% | |
| GTGATGCCTAAGCCTAACTC+TGG | + | chr5_4:12711674-12711693 | Msa0838340:intron | 50.0% | |
| TTCCACCCAGAGTTAGGCTT+AGG | - | chr5_4:12711683-12711702 | None:intergenic | 50.0% | |
| GGGTGGAAGATTTGAGAGAC+TGG | + | chr5_4:12711695-12711714 | Msa0838340:intron | 50.0% | |
| GCTCATTCAGGAGAGACTTG+AGG | + | chr5_4:12712605-12712624 | Msa0838340:intron | 50.0% | |
| GTATCCTCCTTGTCAGGATC+AGG | - | chr5_4:12712702-12712721 | None:intergenic | 50.0% | |
| ACTGCAGTATCCTCCTTGTC+AGG | - | chr5_4:12712708-12712727 | None:intergenic | 50.0% | |
| ! | CGCTTCAGGGAAAGTACAGT+TGG | - | chr5_4:12712760-12712779 | None:intergenic | 50.0% |
| ! | CGGTTGACATCACGTCCTTT+TGG | - | chr5_4:12713213-12713232 | None:intergenic | 50.0% |
| AACCGGAGGTTCATATCAGC+AGG | + | chr5_4:12713228-12713247 | Msa0838340:CDS | 50.0% | |
| AGGTCACATGGCAGCAATCA+CGG | - | chr5_4:12714786-12714805 | None:intergenic | 50.0% | |
| TCTTCTCCGCACCTGCAAAA+CGG | - | chr5_4:12715339-12715358 | None:intergenic | 50.0% | |
| !! | GATAGGTGGAGGGCTTGTTT+TGG | - | chr5_4:12715362-12715381 | None:intergenic | 50.0% |
| CCATGTACTGGATAGGTGGA+GGG | - | chr5_4:12715372-12715391 | None:intergenic | 50.0% | |
| TCCATGTACTGGATAGGTGG+AGG | - | chr5_4:12715373-12715392 | None:intergenic | 50.0% | |
| TCTCAGAGAAGATGGCGTCG+TGG | + | chr5_4:12709911-12709930 | Msa0838340:intron | 55.0% | |
| CTCAGAGAAGATGGCGTCGT+GGG | + | chr5_4:12709912-12709931 | Msa0838340:intron | 55.0% | |
| GATGGCGTCGTGGGAACATA+TGG | + | chr5_4:12709921-12709940 | Msa0838340:intron | 55.0% | |
| TGGCGTCGTGGGAACATATG+GGG | + | chr5_4:12709923-12709942 | Msa0838340:CDS | 55.0% | |
| !! | CTCTGAGCTGAAGAGGTACC+CGG | + | chr5_4:12710104-12710123 | Msa0838340:CDS | 55.0% |
| TCCAGAGGCTCCCTAGTTTC+CGG | - | chr5_4:12710126-12710145 | None:intergenic | 55.0% | |
| GCATCTTCAAGCTGCTCCAG+AGG | - | chr5_4:12710141-12710160 | None:intergenic | 55.0% | |
| GCACGCCATAATACAAGGCG+CGG | - | chr5_4:12711347-12711366 | None:intergenic | 55.0% | |
| TCGCGGCACGCCATAATACA+AGG | - | chr5_4:12711352-12711371 | None:intergenic | 55.0% | |
| AGCACGGCTTGAAATTGGCG+TGG | + | chr5_4:12711415-12711434 | Msa0838340:intron | 55.0% | |
| TGCCTAAGCCTAACTCTGGG+TGG | + | chr5_4:12711678-12711697 | Msa0838340:intron | 55.0% | |
| AAGGACGTGATGTCAACCGG+AGG | + | chr5_4:12713214-12713233 | Msa0838340:CDS | 55.0% | |
| !! | GCAATCACGGTGTTGTGCCA+AGG | - | chr5_4:12714773-12714792 | None:intergenic | 55.0% |
| TCAACAAAGCCCCCCTACCA+TGG | - | chr5_4:12714977-12714996 | None:intergenic | 55.0% | |
| TGGAGAGAAGTGGAGATCCG+TGG | + | chr5_4:12715046-12715065 | Msa0838340:CDS | 55.0% | |
| GGAGAGAAGTGGAGATCCGT+GGG | + | chr5_4:12715047-12715066 | Msa0838340:CDS | 55.0% | |
| GAGAGAAGTGGAGATCCGTG+GGG | + | chr5_4:12715048-12715067 | Msa0838340:CDS | 55.0% | |
| CCCTCCACCTATCCAGTACA+TGG | + | chr5_4:12715369-12715388 | Msa0838340:CDS | 55.0% | |
| CACCCGGCAAAATGCGTCTT+AGG | - | chr5_4:12715654-12715673 | None:intergenic | 55.0% | |
| GGCGTCGTGGGAACATATGG+GGG | + | chr5_4:12709924-12709943 | Msa0838340:CDS | 60.0% | |
| CCAGAGGCTCCCTAGTTTCC+GGG | - | chr5_4:12710125-12710144 | None:intergenic | 60.0% | |
| !! | CGGCGCGATTTTGATGGGTC+AGG | - | chr5_4:12711327-12711346 | None:intergenic | 60.0% |
| !! | AGGCGCGGCGCGATTTTGAT+GGG | - | chr5_4:12711332-12711351 | None:intergenic | 60.0% |
| ! | AAGGCGCGGCGCGATTTTGA+TGG | - | chr5_4:12711333-12711352 | None:intergenic | 60.0% |
| TCGCGCCGCGCCTTGTATTA+TGG | + | chr5_4:12711339-12711358 | Msa0838340:intron | 60.0% | |
| ! | TGTGGCTTGTGCGATGTGCG+TGG | + | chr5_4:12713632-12713651 | Msa0838340:intron | 60.0% |
| GTGGAGATCCGTGGGGTTAG+TGG | + | chr5_4:12715055-12715074 | Msa0838340:CDS | 60.0% | |
| CCCGGAAACTAGGGAGCCTC+TGG | + | chr5_4:12710122-12710141 | Msa0838340:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 12709071 | 12715680 | 12709071 | ID=Msa0838340;Name=Msa0838340 |
| chr5_4 | mRNA | 12709071 | 12715680 | 12709071 | ID=Msa0838340-mRNA-1;Parent=Msa0838340;Name=Msa0838340-mRNA-1;_AED=0.24;_eAED=0.25;_QI=0|0.44|0.3|1|0.44|0.3|10|281|364 |
| chr5_4 | exon | 12709071 | 12709076 | 12709071 | ID=Msa0838340-mRNA-1:exon:5630;Parent=Msa0838340-mRNA-1 |
| chr5_4 | exon | 12709922 | 12710169 | 12709922 | ID=Msa0838340-mRNA-1:exon:5631;Parent=Msa0838340-mRNA-1 |
| chr5_4 | exon | 12710191 | 12710329 | 12710191 | ID=Msa0838340-mRNA-1:exon:5632;Parent=Msa0838340-mRNA-1 |
| chr5_4 | exon | 12712615 | 12712854 | 12712615 | ID=Msa0838340-mRNA-1:exon:5633;Parent=Msa0838340-mRNA-1 |
| chr5_4 | exon | 12712876 | 12713030 | 12712876 | ID=Msa0838340-mRNA-1:exon:5634;Parent=Msa0838340-mRNA-1 |
| chr5_4 | exon | 12713198 | 12713298 | 12713198 | ID=Msa0838340-mRNA-1:exon:5635;Parent=Msa0838340-mRNA-1 |
| chr5_4 | exon | 12713960 | 12714012 | 12713960 | ID=Msa0838340-mRNA-1:exon:5636;Parent=Msa0838340-mRNA-1 |
| chr5_4 | exon | 12714340 | 12714345 | 12714340 | ID=Msa0838340-mRNA-1:exon:5637;Parent=Msa0838340-mRNA-1 |
| chr5_4 | exon | 12714983 | 12715076 | 12714983 | ID=Msa0838340-mRNA-1:exon:5638;Parent=Msa0838340-mRNA-1 |
| chr5_4 | exon | 12715347 | 12715680 | 12715347 | ID=Msa0838340-mRNA-1:exon:5639;Parent=Msa0838340-mRNA-1 |
| chr5_4 | CDS | 12709071 | 12709076 | 12709071 | ID=Msa0838340-mRNA-1:cds;Parent=Msa0838340-mRNA-1 |
| chr5_4 | CDS | 12709922 | 12710169 | 12709922 | ID=Msa0838340-mRNA-1:cds;Parent=Msa0838340-mRNA-1 |
| chr5_4 | CDS | 12710191 | 12710329 | 12710191 | ID=Msa0838340-mRNA-1:cds;Parent=Msa0838340-mRNA-1 |
| chr5_4 | CDS | 12712615 | 12712854 | 12712615 | ID=Msa0838340-mRNA-1:cds;Parent=Msa0838340-mRNA-1 |
| chr5_4 | CDS | 12712876 | 12713030 | 12712876 | ID=Msa0838340-mRNA-1:cds;Parent=Msa0838340-mRNA-1 |
| chr5_4 | CDS | 12713198 | 12713298 | 12713198 | ID=Msa0838340-mRNA-1:cds;Parent=Msa0838340-mRNA-1 |
| chr5_4 | CDS | 12713960 | 12714012 | 12713960 | ID=Msa0838340-mRNA-1:cds;Parent=Msa0838340-mRNA-1 |
| chr5_4 | CDS | 12714340 | 12714345 | 12714340 | ID=Msa0838340-mRNA-1:cds;Parent=Msa0838340-mRNA-1 |
| chr5_4 | CDS | 12714983 | 12715076 | 12714983 | ID=Msa0838340-mRNA-1:cds;Parent=Msa0838340-mRNA-1 |
| chr5_4 | CDS | 12715347 | 12715399 | 12715347 | ID=Msa0838340-mRNA-1:cds;Parent=Msa0838340-mRNA-1 |
| chr5_4 | three_prime_UTR | 12715400 | 12715680 | 12715400 | ID=Msa0838340-mRNA-1:three_prime_utr;Parent=Msa0838340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
