Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095120 | XP_013448907.1 | 97.959 | 245 | 5 | 0 | 1 | 245 | 1 | 245 | 1.93e-176 | 494 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095120 | sp|Q53MB8|TLPH_ORYSJ | 67.421 | 221 | 71 | 1 | 24 | 243 | 30 | 250 | 1.87e-105 | 308 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095120 | A0A072TZL3 | 97.959 | 245 | 5 | 0 | 1 | 245 | 1 | 245 | 9.20e-177 | 494 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095120 | Msa1022530 | 0.990014 | 1.144432e-180 | -8.615850e-47 |
| Msa0095120 | Msa1422860 | 0.835070 | 2.078267e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095120 | MtrunA17_Chr7g0239131 | 97.959 | 245 | 5 | 0 | 1 | 245 | 1 | 245 | 1.77e-180 | 494 |
| Msa0095120 | MtrunA17_Chr3g0112091 | 67.647 | 238 | 76 | 1 | 7 | 243 | 1 | 238 | 4.54e-119 | 339 |
| Msa0095120 | MtrunA17_Chr8g0392961 | 49.587 | 242 | 115 | 3 | 5 | 242 | 7 | 245 | 4.55e-79 | 238 |
| Msa0095120 | MtrunA17_Chr6g0482741 | 47.479 | 238 | 120 | 2 | 7 | 242 | 6 | 240 | 6.89e-78 | 234 |
| Msa0095120 | MtrunA17_Chr8g0351851 | 49.569 | 232 | 114 | 2 | 11 | 241 | 8 | 237 | 9.26e-78 | 234 |
| Msa0095120 | MtrunA17_Chr3g0141341 | 47.556 | 225 | 116 | 2 | 19 | 242 | 8 | 231 | 2.24e-71 | 218 |
| Msa0095120 | MtrunA17_Chr8g0352471 | 45.902 | 244 | 128 | 3 | 2 | 242 | 5 | 247 | 8.25e-71 | 219 |
| Msa0095120 | MtrunA17_Chr1g0179851 | 48.899 | 227 | 111 | 5 | 19 | 242 | 15 | 239 | 1.05e-69 | 214 |
| Msa0095120 | MtrunA17_Chr1g0180231 | 47.541 | 244 | 120 | 6 | 2 | 242 | 4 | 242 | 1.27e-69 | 214 |
| Msa0095120 | MtrunA17_Chr1g0179871 | 47.541 | 244 | 120 | 6 | 2 | 242 | 4 | 242 | 1.27e-69 | 214 |
| Msa0095120 | MtrunA17_Chr1g0154591 | 47.210 | 233 | 121 | 2 | 11 | 242 | 1 | 232 | 1.55e-69 | 213 |
| Msa0095120 | MtrunA17_Chr5g0405581 | 45.490 | 255 | 128 | 6 | 1 | 245 | 1 | 254 | 2.50e-69 | 215 |
| Msa0095120 | MtrunA17_Chr8g0357311 | 45.679 | 243 | 128 | 3 | 3 | 242 | 6 | 247 | 1.72e-68 | 211 |
| Msa0095120 | MtrunA17_Chr1g0179891 | 48.458 | 227 | 112 | 5 | 19 | 242 | 13 | 237 | 4.22e-68 | 210 |
| Msa0095120 | MtrunA17_Chr1g0180221 | 46.531 | 245 | 125 | 6 | 1 | 242 | 41 | 282 | 7.45e-68 | 211 |
| Msa0095120 | MtrunA17_Chr5g0428801 | 43.802 | 242 | 129 | 3 | 7 | 242 | 10 | 250 | 1.44e-67 | 211 |
| Msa0095120 | MtrunA17_Chr8g0371781 | 46.154 | 234 | 117 | 3 | 16 | 241 | 21 | 253 | 1.67e-67 | 211 |
| Msa0095120 | MtrunA17_Chr5g0424221 | 46.544 | 217 | 108 | 3 | 25 | 241 | 31 | 239 | 9.38e-67 | 208 |
| Msa0095120 | MtrunA17_Chr1g0180121 | 43.673 | 245 | 130 | 6 | 1 | 242 | 3 | 242 | 2.40e-65 | 203 |
| Msa0095120 | MtrunA17_Chr5g0405611 | 46.930 | 228 | 108 | 5 | 18 | 242 | 91 | 308 | 5.46e-65 | 206 |
| Msa0095120 | MtrunA17_Chr7g0265011 | 45.536 | 224 | 117 | 5 | 22 | 242 | 66 | 287 | 1.02e-64 | 203 |
| Msa0095120 | MtrunA17_Chr4g0037331 | 43.750 | 240 | 129 | 3 | 3 | 241 | 5 | 239 | 1.30e-64 | 204 |
| Msa0095120 | MtrunA17_Chr1g0156711 | 45.783 | 249 | 129 | 6 | 1 | 244 | 1 | 248 | 1.41e-64 | 204 |
| Msa0095120 | MtrunA17_Chr6g0452331 | 42.972 | 249 | 135 | 4 | 1 | 242 | 4 | 252 | 8.39e-64 | 200 |
| Msa0095120 | MtrunA17_Chr1g0180161 | 43.725 | 247 | 127 | 8 | 1 | 242 | 3 | 242 | 2.23e-63 | 198 |
| Msa0095120 | MtrunA17_Chr3g0142781 | 47.500 | 240 | 120 | 6 | 8 | 242 | 11 | 249 | 3.13e-63 | 200 |
| Msa0095120 | MtrunA17_Chr2g0312181 | 47.534 | 223 | 113 | 4 | 23 | 242 | 22 | 243 | 1.25e-62 | 196 |
| Msa0095120 | MtrunA17_Chr8g0371771 | 43.460 | 237 | 124 | 5 | 7 | 241 | 15 | 243 | 2.03e-61 | 195 |
| Msa0095120 | MtrunA17_Chr2g0311521 | 41.532 | 248 | 138 | 5 | 1 | 242 | 1 | 247 | 1.54e-60 | 205 |
| Msa0095120 | MtrunA17_Chr4g0037351 | 43.089 | 246 | 131 | 5 | 7 | 244 | 6 | 250 | 1.87e-60 | 193 |
| Msa0095120 | MtrunA17_Chr2g0311561 | 43.556 | 225 | 123 | 4 | 21 | 242 | 9 | 232 | 1.36e-55 | 179 |
| Msa0095120 | MtrunA17_Chr2g0311551 | 40.611 | 229 | 132 | 4 | 17 | 242 | 17 | 244 | 1.40e-53 | 185 |
| Msa0095120 | MtrunA17_Chr4g0031221 | 37.344 | 241 | 141 | 5 | 6 | 241 | 16 | 251 | 1.22e-52 | 171 |
| Msa0095120 | MtrunA17_Chr5g0397831 | 36.694 | 248 | 132 | 8 | 3 | 242 | 6 | 236 | 3.35e-46 | 154 |
| Msa0095120 | MtrunA17_Chr5g0397821 | 38.914 | 221 | 115 | 7 | 23 | 242 | 24 | 225 | 9.60e-42 | 142 |
| Msa0095120 | MtrunA17_Chr8g0386341 | 35.983 | 239 | 129 | 9 | 6 | 242 | 32 | 248 | 4.19e-41 | 141 |
| Msa0095120 | MtrunA17_Chr2g0311501 | 38.889 | 180 | 101 | 6 | 69 | 242 | 6 | 182 | 1.53e-36 | 128 |
| Msa0095120 | MtrunA17_Chr2g0311531 | 36.771 | 223 | 111 | 10 | 23 | 242 | 27 | 222 | 4.26e-35 | 125 |
| Msa0095120 | MtrunA17_Chr2g0309611 | 32.203 | 236 | 137 | 7 | 6 | 225 | 7 | 235 | 5.27e-35 | 125 |
| Msa0095120 | MtrunA17_Chr1g0179911 | 32.432 | 222 | 129 | 7 | 29 | 242 | 30 | 238 | 2.01e-30 | 113 |
| Msa0095120 | MtrunA17_Chr5g0406771 | 36.994 | 173 | 100 | 6 | 17 | 181 | 4 | 175 | 5.66e-30 | 110 |
| Msa0095120 | MtrunA17_Chr8g0386351 | 37.640 | 178 | 96 | 8 | 1 | 177 | 43 | 206 | 5.41e-27 | 103 |
| Msa0095120 | MtrunA17_Chr1g0180181 | 48.837 | 86 | 42 | 2 | 159 | 242 | 14 | 99 | 1.50e-19 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095120 | AT5G02140.1 | 76.230 | 244 | 55 | 2 | 1 | 243 | 1 | 242 | 3.30e-132 | 375 |
| Msa0095120 | AT5G02140.2 | 76.230 | 244 | 55 | 2 | 1 | 243 | 1 | 242 | 8.89e-132 | 372 |
| Msa0095120 | AT1G18250.1 | 51.786 | 224 | 103 | 3 | 21 | 242 | 19 | 239 | 1.76e-76 | 231 |
| Msa0095120 | AT1G18250.2 | 52.252 | 222 | 101 | 3 | 23 | 242 | 22 | 240 | 2.12e-76 | 231 |
| Msa0095120 | AT1G19320.1 | 48.770 | 244 | 118 | 4 | 3 | 241 | 5 | 246 | 7.25e-76 | 230 |
| Msa0095120 | AT1G75030.1 | 48.163 | 245 | 122 | 4 | 1 | 242 | 1 | 243 | 1.61e-75 | 229 |
| Msa0095120 | AT1G73620.1 | 50.893 | 224 | 105 | 3 | 21 | 242 | 40 | 260 | 4.21e-75 | 229 |
| Msa0095120 | AT5G24620.1 | 45.020 | 251 | 129 | 3 | 1 | 242 | 1 | 251 | 7.74e-75 | 233 |
| Msa0095120 | AT5G24620.4 | 45.020 | 251 | 129 | 3 | 1 | 242 | 56 | 306 | 3.89e-74 | 233 |
| Msa0095120 | AT5G24620.3 | 45.020 | 251 | 129 | 3 | 1 | 242 | 77 | 327 | 6.19e-74 | 233 |
| Msa0095120 | AT1G75800.1 | 45.935 | 246 | 125 | 5 | 7 | 245 | 7 | 251 | 2.67e-69 | 216 |
| Msa0095120 | AT4G38660.1 | 45.041 | 242 | 126 | 4 | 2 | 242 | 10 | 245 | 4.67e-69 | 216 |
| Msa0095120 | AT4G38660.2 | 46.847 | 222 | 112 | 3 | 22 | 242 | 7 | 223 | 2.81e-68 | 213 |
| Msa0095120 | AT1G77700.3 | 45.339 | 236 | 120 | 4 | 7 | 241 | 44 | 271 | 5.76e-68 | 213 |
| Msa0095120 | AT1G77700.2 | 45.339 | 236 | 120 | 4 | 7 | 241 | 44 | 271 | 5.77e-68 | 212 |
| Msa0095120 | AT1G75050.1 | 46.639 | 238 | 121 | 5 | 8 | 242 | 9 | 243 | 2.13e-67 | 209 |
| Msa0095120 | AT1G77700.1 | 47.465 | 217 | 106 | 3 | 25 | 241 | 91 | 299 | 3.91e-67 | 211 |
| Msa0095120 | AT1G75040.1 | 46.809 | 235 | 121 | 4 | 8 | 242 | 9 | 239 | 1.73e-66 | 206 |
| Msa0095120 | AT1G20030.1 | 46.288 | 229 | 115 | 5 | 24 | 245 | 4 | 231 | 3.17e-64 | 202 |
| Msa0095120 | AT4G24180.5 | 44.223 | 251 | 123 | 6 | 6 | 242 | 4 | 251 | 3.35e-64 | 201 |
| Msa0095120 | AT1G20030.2 | 46.288 | 229 | 115 | 5 | 24 | 245 | 21 | 248 | 4.70e-64 | 202 |
| Msa0095120 | AT4G24180.2 | 44.223 | 251 | 123 | 6 | 6 | 242 | 4 | 251 | 9.44e-64 | 201 |
| Msa0095120 | AT4G24180.6 | 43.673 | 245 | 126 | 6 | 7 | 242 | 15 | 256 | 9.92e-64 | 200 |
| Msa0095120 | AT4G24180.1 | 43.673 | 245 | 126 | 6 | 7 | 242 | 15 | 256 | 2.30e-63 | 201 |
| Msa0095120 | AT2G17860.1 | 42.917 | 240 | 125 | 6 | 17 | 245 | 14 | 252 | 3.86e-62 | 195 |
| Msa0095120 | AT4G38670.3 | 43.265 | 245 | 131 | 7 | 7 | 244 | 6 | 249 | 1.71e-61 | 194 |
| Msa0095120 | AT4G38670.1 | 43.265 | 245 | 131 | 7 | 7 | 244 | 6 | 249 | 1.71e-61 | 194 |
| Msa0095120 | AT5G40020.1 | 40.816 | 245 | 140 | 2 | 3 | 242 | 4 | 248 | 4.75e-61 | 192 |
| Msa0095120 | AT4G38670.2 | 44.156 | 231 | 122 | 6 | 20 | 244 | 4 | 233 | 6.19e-60 | 190 |
| Msa0095120 | AT4G36010.1 | 43.404 | 235 | 123 | 5 | 20 | 245 | 20 | 253 | 7.39e-60 | 191 |
| Msa0095120 | AT4G36010.2 | 43.404 | 235 | 123 | 5 | 20 | 245 | 20 | 253 | 7.39e-60 | 191 |
| Msa0095120 | AT4G24180.4 | 43.983 | 241 | 118 | 6 | 6 | 232 | 4 | 241 | 1.00e-59 | 191 |
| Msa0095120 | AT4G24180.3 | 43.697 | 238 | 118 | 7 | 8 | 232 | 12 | 246 | 2.11e-59 | 191 |
| Msa0095120 | AT5G38280.1 | 39.344 | 244 | 140 | 5 | 6 | 242 | 8 | 250 | 2.42e-53 | 182 |
| Msa0095120 | AT5G38280.2 | 39.344 | 244 | 140 | 5 | 6 | 242 | 8 | 250 | 2.92e-53 | 182 |
| Msa0095120 | AT2G28790.2 | 39.149 | 235 | 138 | 5 | 11 | 241 | 40 | 273 | 3.33e-52 | 171 |
| Msa0095120 | AT2G28790.1 | 39.149 | 235 | 138 | 5 | 11 | 241 | 15 | 248 | 4.23e-52 | 169 |
| Msa0095120 | AT4G11650.1 | 37.500 | 240 | 126 | 8 | 7 | 242 | 4 | 223 | 9.90e-43 | 145 |
| Msa0095120 | AT4G36000.2 | 49.655 | 145 | 66 | 4 | 98 | 242 | 1 | 138 | 2.16e-41 | 141 |
| Msa0095120 | AT4G36000.1 | 49.655 | 145 | 66 | 4 | 98 | 242 | 1 | 138 | 2.16e-41 | 141 |
| Msa0095120 | AT4G18253.1 | 33.613 | 238 | 145 | 4 | 11 | 242 | 8 | 238 | 1.76e-39 | 137 |
| Msa0095120 | AT1G70250.1 | 35.714 | 224 | 127 | 8 | 29 | 242 | 151 | 367 | 3.63e-34 | 130 |
| Msa0095120 | AT4G18250.1 | 34.728 | 239 | 142 | 8 | 11 | 242 | 41 | 272 | 3.70e-34 | 130 |
| Msa0095120 | AT5G24620.2 | 46.667 | 120 | 57 | 2 | 130 | 242 | 15 | 134 | 5.98e-32 | 119 |
| Msa0095120 | AT2G24810.1 | 51.948 | 77 | 35 | 1 | 167 | 241 | 116 | 192 | 2.25e-19 | 83.2 |
Find 62 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATTCGGCATCGGAATTC+CGG | 0.289182 | 1_2:+78932373 | None:intergenic |
| AAAATGGTCAGGAAGAATTT+GGG | 0.307745 | 1_2:-78932911 | Msa0095120:CDS |
| AGATGAAATCCACCATCTTT+TGG | 0.315793 | 1_2:+78932970 | None:intergenic |
| TATGATGTAAGCTTAGTTGA+TGG | 0.343981 | 1_2:-78932736 | Msa0095120:CDS |
| CCAATAGGTTTCATTGAAAC+AGG | 0.361897 | 1_2:+78932703 | None:intergenic |
| CCTGTTTCAATGAAACCTAT+TGG | 0.368230 | 1_2:-78932703 | Msa0095120:CDS |
| CTGTCCTCCGCCGCAGTAAC+CGG | 0.368507 | 1_2:-78932392 | Msa0095120:exon |
| GCACTTGAAGTGAAGAGAAA+TGG | 0.377986 | 1_2:-78932619 | Msa0095120:CDS |
| GTCATTTCCACAACTGTTGC+TGG | 0.386230 | 1_2:+78932790 | None:intergenic |
| TAAGCATAACTATATGCCTT+AGG | 0.387568 | 1_2:+78932469 | None:intergenic |
| CTCTTCACTTCAAGTGCTGA+TGG | 0.392487 | 1_2:+78932625 | None:intergenic |
| AAACCTATTGGTGGTGGAAT+TGG | 0.394141 | 1_2:-78932691 | Msa0095120:CDS |
| CAGCTTCTTCAACTTCAATT+CGG | 0.397898 | 1_2:+78932359 | None:intergenic |
| CAACCAATTCCACCACCAAT+AGG | 0.409025 | 1_2:+78932688 | None:intergenic |
| TGGTTGTAAAAGTGCTTGTT+TGG | 0.416016 | 1_2:-78932587 | Msa0095120:CDS |
| ACATTCGACAACGACGGAAA+TGG | 0.420855 | 1_2:-78932874 | Msa0095120:CDS |
| CCAGGGATACTAGGAGGATC+AGG | 0.420885 | 1_2:-78933003 | Msa0095120:CDS |
| GGAAATGGTCAATGTCTAAC+AGG | 0.424145 | 1_2:-78932859 | Msa0095120:CDS |
| CTAGTAGTCTTAATAGATGC+AGG | 0.437595 | 1_2:-78932438 | Msa0095120:CDS |
| TGTCTAACAGGTGATTGCTT+TGG | 0.446481 | 1_2:-78932847 | Msa0095120:CDS |
| CACTTGAAGTGAAGAGAAAT+GGG | 0.447542 | 1_2:-78932618 | Msa0095120:CDS |
| CTTCAACTTCAATTCGGCAT+CGG | 0.462918 | 1_2:+78932365 | None:intergenic |
| CCTGATCCTCCTAGTATCCC+TGG | 0.482293 | 1_2:+78933003 | None:intergenic |
| CTTTAAGGCTATTTGCCCTA+AGG | 0.485832 | 1_2:-78932485 | Msa0095120:CDS |
| TCTGCTAAATATTGTTGCAC+TGG | 0.488075 | 1_2:-78932556 | Msa0095120:CDS |
| AAGCATAACTATATGCCTTA+GGG | 0.496697 | 1_2:+78932470 | None:intergenic |
| AAAGATGGTGGATTTCATCT+AGG | 0.501778 | 1_2:-78932967 | Msa0095120:CDS |
| AGTGTATGGCCAGGGATACT+AGG | 0.502194 | 1_2:-78933012 | Msa0095120:CDS |
| ATTGGTGGTGGAATTGGTTG+TGG | 0.508712 | 1_2:-78932685 | Msa0095120:CDS |
| CTTACATCATAGAAATGTAA+TGG | 0.510308 | 1_2:+78932748 | None:intergenic |
| TGTGGAGAAAGTGTATGGCC+AGG | 0.520362 | 1_2:-78933021 | Msa0095120:CDS |
| TAGGGCAAATAGCCTTAAAG+AGG | 0.522958 | 1_2:+78932488 | None:intergenic |
| TGATTGAGCAAAAGACGATA+AGG | 0.531414 | 1_2:+78933973 | None:intergenic |
| TCTTCACTTCAAGTGCTGAT+GGG | 0.532613 | 1_2:+78932626 | None:intergenic |
| TTAATAGATGCAGGGCTCCA+AGG | 0.543473 | 1_2:-78932429 | Msa0095120:CDS |
| AATTCCGGTTACTGCGGCGG+AGG | 0.549034 | 1_2:+78932388 | None:intergenic |
| CTAATTCTAGTGAACAATTG+TGG | 0.556438 | 1_2:-78933039 | Msa0095120:CDS |
| TTTGGTAAACTACAATGTGC+AGG | 0.556520 | 1_2:-78932829 | Msa0095120:CDS |
| AAACTACAATGTGCAGGACT+AGG | 0.558867 | 1_2:-78932823 | Msa0095120:CDS |
| CAGAAAGTGATAACATACCT+TGG | 0.563677 | 1_2:+78932412 | None:intergenic |
| CGGAATTCCGGTTACTGCGG+CGG | 0.578281 | 1_2:+78932385 | None:intergenic |
| GGAAGAATTTGGGGAAGACA+AGG | 0.583708 | 1_2:-78932901 | Msa0095120:CDS |
| GATAAGGTAGTAGAGAAGTG+TGG | 0.586789 | 1_2:+78933989 | None:intergenic |
| TCAATGAAACCTATTGGTGG+TGG | 0.586853 | 1_2:-78932697 | Msa0095120:CDS |
| ACAATTGTGGAGAAAGTGTA+TGG | 0.589098 | 1_2:-78933026 | Msa0095120:CDS |
| CAGGGATACTAGGAGGATCA+GGG | 0.590085 | 1_2:-78933002 | Msa0095120:CDS |
| GTGGAGAAAGTGTATGGCCA+GGG | 0.593552 | 1_2:-78933020 | Msa0095120:CDS |
| GGGCAACAAACACCAAAAGA+TGG | 0.593797 | 1_2:-78932982 | Msa0095120:CDS |
| AGTTCCACCAGCAACAGTTG+TGG | 0.601349 | 1_2:-78932797 | Msa0095120:CDS |
| AGTGAAGAGAAATGGGAAAG+TGG | 0.602541 | 1_2:-78932611 | Msa0095120:CDS |
| GGTGGATTTCATCTAGGTAG+CGG | 0.605118 | 1_2:-78932961 | Msa0095120:CDS |
| TAGTAGTCTTAATAGATGCA+GGG | 0.620726 | 1_2:-78932437 | Msa0095120:CDS |
| AAGAGAAATGGGAAAGTGGT+TGG | 0.627116 | 1_2:-78932607 | Msa0095120:CDS |
| CAACAAACACCAAAAGATGG+TGG | 0.639516 | 1_2:-78932979 | Msa0095120:CDS |
| GTTTCAATGAAACCTATTGG+TGG | 0.642342 | 1_2:-78932700 | Msa0095120:CDS |
| ATTTCCACAACTGTTGCTGG+TGG | 0.648087 | 1_2:+78932793 | None:intergenic |
| AAATGGTCAGGAAGAATTTG+GGG | 0.648322 | 1_2:-78932910 | Msa0095120:CDS |
| CATCGGAATTCCGGTTACTG+CGG | 0.651362 | 1_2:+78932382 | None:intergenic |
| ACAGTTGTGGAAATGACACT+AGG | 0.669401 | 1_2:-78932784 | Msa0095120:CDS |
| CTACAATGTGCAGGACTAGG+AGG | 0.671127 | 1_2:-78932820 | Msa0095120:CDS |
| GTATGGCCAGGGATACTAGG+AGG | 0.694254 | 1_2:-78933009 | Msa0095120:CDS |
| GGTTGCACATTCGACAACGA+CGG | 0.722930 | 1_2:-78932880 | Msa0095120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATTTGTATAATATAAAA+AGG | + | chr1_2:78932332-78932351 | None:intergenic | 10.0% |
| !!! | AAAGATTATGTTTTTTTTTT+TGG | - | chr1_2:78933796-78933815 | Msa0095120:intron | 10.0% |
| !!! | ATGATTTGTATAATATAAAA+AGG | + | chr1_2:78932332-78932351 | None:intergenic | 10.0% |
| !!! | AAAGATTATGTTTTTTTTTT+TGG | - | chr1_2:78933796-78933815 | Msa0095120:intron | 10.0% |
| !!! | TATATTAGAAGTTTTTTGTT+AGG | + | chr1_2:78932237-78932256 | None:intergenic | 15.0% |
| !! | GACATAATTAAAATAGTATT+TGG | - | chr1_2:78932770-78932789 | Msa0095120:CDS | 15.0% |
| !!! | TATATTAGAAGTTTTTTGTT+AGG | + | chr1_2:78932237-78932256 | None:intergenic | 15.0% |
| !! | GACATAATTAAAATAGTATT+TGG | - | chr1_2:78932770-78932789 | Msa0095120:CDS | 15.0% |
| !! | AAGTAAATTGTTTACTTTAG+AGG | + | chr1_2:78932814-78932833 | None:intergenic | 20.0% |
| !!! | AACTATTGATTTGTTTATCA+CGG | + | chr1_2:78932859-78932878 | None:intergenic | 20.0% |
| !! | TATTAGATGTACAAGAAAAA+TGG | - | chr1_2:78933190-78933209 | Msa0095120:intron | 20.0% |
| !!! | TTATGTTTTTTTTTTTGGTC+AGG | - | chr1_2:78933801-78933820 | Msa0095120:intron | 20.0% |
| !! | AAGTAAATTGTTTACTTTAG+AGG | + | chr1_2:78932814-78932833 | None:intergenic | 20.0% |
| !!! | AACTATTGATTTGTTTATCA+CGG | + | chr1_2:78932859-78932878 | None:intergenic | 20.0% |
| !! | TATTAGATGTACAAGAAAAA+TGG | - | chr1_2:78933190-78933209 | Msa0095120:intron | 20.0% |
| !!! | TTATGTTTTTTTTTTTGGTC+AGG | - | chr1_2:78933801-78933820 | Msa0095120:intron | 20.0% |
| !! | CATTTTTCTTGAGAATCATA+TGG | - | chr1_2:78932578-78932597 | Msa0095120:CDS | 25.0% |
| !!! | TTCAACACAAACATGTTTTT+TGG | + | chr1_2:78932610-78932629 | None:intergenic | 25.0% |
| ! | TAAATAACCAACTATGTGTT+TGG | + | chr1_2:78932644-78932663 | None:intergenic | 25.0% |
| ! | TAGAATTTATGTGCATGATT+GGG | + | chr1_2:78932971-78932990 | None:intergenic | 25.0% |
| ! | CTTACATCATAGAAATGTAA+TGG | + | chr1_2:78933372-78933391 | None:intergenic | 25.0% |
| !! | CATTTTTCTTGAGAATCATA+TGG | - | chr1_2:78932578-78932597 | Msa0095120:CDS | 25.0% |
| !!! | TTCAACACAAACATGTTTTT+TGG | + | chr1_2:78932610-78932629 | None:intergenic | 25.0% |
| ! | TAAATAACCAACTATGTGTT+TGG | + | chr1_2:78932644-78932663 | None:intergenic | 25.0% |
| ! | TAGAATTTATGTGCATGATT+GGG | + | chr1_2:78932971-78932990 | None:intergenic | 25.0% |
| ! | CTTACATCATAGAAATGTAA+TGG | + | chr1_2:78933372-78933391 | None:intergenic | 25.0% |
| ! | TTTTGCTCAATCATTCTCAT+AGG | - | chr1_2:78932154-78932173 | Msa0095120:three_prime_UTR | 30.0% |
| CTAAGAATCTTAGGTTTGTA+TGG | - | chr1_2:78932417-78932436 | Msa0095120:CDS | 30.0% | |
| GTATAAATGTGAATGTTTCG+AGG | + | chr1_2:78932514-78932533 | None:intergenic | 30.0% | |
| AGTTTAACCAAACACATAGT+TGG | - | chr1_2:78932634-78932653 | Msa0095120:CDS | 30.0% | |
| ATTGATCCAACTACAAACAT+TGG | - | chr1_2:78932665-78932684 | Msa0095120:CDS | 30.0% | |
| TTGATCCAACTACAAACATT+GGG | - | chr1_2:78932666-78932685 | Msa0095120:CDS | 30.0% | |
| !! | AAATAGTATTTGGTGCATAG+AGG | - | chr1_2:78932780-78932799 | Msa0095120:CDS | 30.0% |
| ACGTGCATAATAAATCATGA+TGG | - | chr1_2:78932891-78932910 | Msa0095120:CDS | 30.0% | |
| GTAGAATTTATGTGCATGAT+TGG | + | chr1_2:78932972-78932991 | None:intergenic | 30.0% | |
| TATCTATTGTTTGATGCAGA+TGG | - | chr1_2:78933048-78933067 | Msa0095120:CDS | 30.0% | |
| CTAATTCTAGTGAACAATTG+TGG | - | chr1_2:78933078-78933097 | Msa0095120:intron | 30.0% | |
| AAAAATGGTCAGGAAGAATT+TGG | - | chr1_2:78933205-78933224 | Msa0095120:intron | 30.0% | |
| AAAATGGTCAGGAAGAATTT+GGG | - | chr1_2:78933206-78933225 | Msa0095120:intron | 30.0% | |
| TATGATGTAAGCTTAGTTGA+TGG | - | chr1_2:78933381-78933400 | Msa0095120:intron | 30.0% | |
| ! | AGTGTAGGTTTACAAGTTTT+AGG | + | chr1_2:78933600-78933619 | None:intergenic | 30.0% |
| ! | ACTTTTTGCTAACCTCTTTA+AGG | - | chr1_2:78933617-78933636 | Msa0095120:intron | 30.0% |
| AAGCATAACTATATGCCTTA+GGG | + | chr1_2:78933650-78933669 | None:intergenic | 30.0% | |
| TAAGCATAACTATATGCCTT+AGG | + | chr1_2:78933651-78933670 | None:intergenic | 30.0% | |
| ! | TAGTAGTCTTAATAGATGCA+GGG | - | chr1_2:78933680-78933699 | Msa0095120:intron | 30.0% |
| ACAATGCATTGTTATATGCA+GGG | + | chr1_2:78933893-78933912 | None:intergenic | 30.0% | |
| ! | TTTTGCTCAATCATTCTCAT+AGG | - | chr1_2:78932154-78932173 | Msa0095120:three_prime_UTR | 30.0% |
| CTAAGAATCTTAGGTTTGTA+TGG | - | chr1_2:78932417-78932436 | Msa0095120:CDS | 30.0% | |
| GTATAAATGTGAATGTTTCG+AGG | + | chr1_2:78932514-78932533 | None:intergenic | 30.0% | |
| AGTTTAACCAAACACATAGT+TGG | - | chr1_2:78932634-78932653 | Msa0095120:CDS | 30.0% | |
| ATTGATCCAACTACAAACAT+TGG | - | chr1_2:78932665-78932684 | Msa0095120:CDS | 30.0% | |
| TTGATCCAACTACAAACATT+GGG | - | chr1_2:78932666-78932685 | Msa0095120:CDS | 30.0% | |
| !! | AAATAGTATTTGGTGCATAG+AGG | - | chr1_2:78932780-78932799 | Msa0095120:CDS | 30.0% |
| ACGTGCATAATAAATCATGA+TGG | - | chr1_2:78932891-78932910 | Msa0095120:CDS | 30.0% | |
| GTAGAATTTATGTGCATGAT+TGG | + | chr1_2:78932972-78932991 | None:intergenic | 30.0% | |
| TATCTATTGTTTGATGCAGA+TGG | - | chr1_2:78933048-78933067 | Msa0095120:CDS | 30.0% | |
| CTAATTCTAGTGAACAATTG+TGG | - | chr1_2:78933078-78933097 | Msa0095120:intron | 30.0% | |
| AAAAATGGTCAGGAAGAATT+TGG | - | chr1_2:78933205-78933224 | Msa0095120:intron | 30.0% | |
| AAAATGGTCAGGAAGAATTT+GGG | - | chr1_2:78933206-78933225 | Msa0095120:intron | 30.0% | |
| TATGATGTAAGCTTAGTTGA+TGG | - | chr1_2:78933381-78933400 | Msa0095120:intron | 30.0% | |
| ! | AGTGTAGGTTTACAAGTTTT+AGG | + | chr1_2:78933600-78933619 | None:intergenic | 30.0% |
| ! | ACTTTTTGCTAACCTCTTTA+AGG | - | chr1_2:78933617-78933636 | Msa0095120:intron | 30.0% |
| AAGCATAACTATATGCCTTA+GGG | + | chr1_2:78933650-78933669 | None:intergenic | 30.0% | |
| TAAGCATAACTATATGCCTT+AGG | + | chr1_2:78933651-78933670 | None:intergenic | 30.0% | |
| ! | TAGTAGTCTTAATAGATGCA+GGG | - | chr1_2:78933680-78933699 | Msa0095120:intron | 30.0% |
| ACAATGCATTGTTATATGCA+GGG | + | chr1_2:78933893-78933912 | None:intergenic | 30.0% | |
| TGATTGAGCAAAAGACGATA+AGG | + | chr1_2:78932147-78932166 | None:intergenic | 35.0% | |
| AACCTAAGATTCTTAGTTGC+TGG | + | chr1_2:78932413-78932432 | None:intergenic | 35.0% | |
| ! | ACAATTGTGGAGAAAGTGTA+TGG | - | chr1_2:78933091-78933110 | Msa0095120:intron | 35.0% |
| ! | AGATGAAATCCACCATCTTT+TGG | + | chr1_2:78933150-78933169 | None:intergenic | 35.0% |
| !! | AAAGATGGTGGATTTCATCT+AGG | - | chr1_2:78933150-78933169 | Msa0095120:intron | 35.0% |
| GATGTACAAGAAAAATGGTC+AGG | - | chr1_2:78933195-78933214 | Msa0095120:intron | 35.0% | |
| AAATGGTCAGGAAGAATTTG+GGG | - | chr1_2:78933207-78933226 | Msa0095120:intron | 35.0% | |
| TTTGGTAAACTACAATGTGC+AGG | - | chr1_2:78933288-78933307 | Msa0095120:intron | 35.0% | |
| CCAATAGGTTTCATTGAAAC+AGG | + | chr1_2:78933417-78933436 | None:intergenic | 35.0% | |
| CCTGTTTCAATGAAACCTAT+TGG | - | chr1_2:78933414-78933433 | Msa0095120:intron | 35.0% | |
| GTTTCAATGAAACCTATTGG+TGG | - | chr1_2:78933417-78933436 | Msa0095120:intron | 35.0% | |
| CACTTGAAGTGAAGAGAAAT+GGG | - | chr1_2:78933499-78933518 | Msa0095120:intron | 35.0% | |
| !! | TGGTTGTAAAAGTGCTTGTT+TGG | - | chr1_2:78933530-78933549 | Msa0095120:intron | 35.0% |
| TCTGCTAAATATTGTTGCAC+TGG | - | chr1_2:78933561-78933580 | Msa0095120:intron | 35.0% | |
| ! | AAGAGGTTAGCAAAAAGTGT+AGG | + | chr1_2:78933615-78933634 | None:intergenic | 35.0% |
| ! | CTAGTAGTCTTAATAGATGC+AGG | - | chr1_2:78933679-78933698 | Msa0095120:intron | 35.0% |
| CAGAAAGTGATAACATACCT+TGG | + | chr1_2:78933708-78933727 | None:intergenic | 35.0% | |
| CAGCTTCTTCAACTTCAATT+CGG | + | chr1_2:78933761-78933780 | None:intergenic | 35.0% | |
| TGGCTAGAATTCACCTTATA+AGG | - | chr1_2:78933832-78933851 | Msa0095120:intron | 35.0% | |
| CAATGCATTGTTATATGCAG+GGG | + | chr1_2:78933892-78933911 | None:intergenic | 35.0% | |
| GACAATGCATTGTTATATGC+AGG | + | chr1_2:78933894-78933913 | None:intergenic | 35.0% | |
| TGATTGAGCAAAAGACGATA+AGG | + | chr1_2:78932147-78932166 | None:intergenic | 35.0% | |
| AACCTAAGATTCTTAGTTGC+TGG | + | chr1_2:78932413-78932432 | None:intergenic | 35.0% | |
| ! | ACAATTGTGGAGAAAGTGTA+TGG | - | chr1_2:78933091-78933110 | Msa0095120:intron | 35.0% |
| ! | AGATGAAATCCACCATCTTT+TGG | + | chr1_2:78933150-78933169 | None:intergenic | 35.0% |
| !! | AAAGATGGTGGATTTCATCT+AGG | - | chr1_2:78933150-78933169 | Msa0095120:intron | 35.0% |
| GATGTACAAGAAAAATGGTC+AGG | - | chr1_2:78933195-78933214 | Msa0095120:intron | 35.0% | |
| AAATGGTCAGGAAGAATTTG+GGG | - | chr1_2:78933207-78933226 | Msa0095120:intron | 35.0% | |
| TTTGGTAAACTACAATGTGC+AGG | - | chr1_2:78933288-78933307 | Msa0095120:intron | 35.0% | |
| CCAATAGGTTTCATTGAAAC+AGG | + | chr1_2:78933417-78933436 | None:intergenic | 35.0% | |
| CCTGTTTCAATGAAACCTAT+TGG | - | chr1_2:78933414-78933433 | Msa0095120:intron | 35.0% | |
| GTTTCAATGAAACCTATTGG+TGG | - | chr1_2:78933417-78933436 | Msa0095120:intron | 35.0% | |
| CACTTGAAGTGAAGAGAAAT+GGG | - | chr1_2:78933499-78933518 | Msa0095120:intron | 35.0% | |
| !! | TGGTTGTAAAAGTGCTTGTT+TGG | - | chr1_2:78933530-78933549 | Msa0095120:intron | 35.0% |
| TCTGCTAAATATTGTTGCAC+TGG | - | chr1_2:78933561-78933580 | Msa0095120:intron | 35.0% | |
| ! | AAGAGGTTAGCAAAAAGTGT+AGG | + | chr1_2:78933615-78933634 | None:intergenic | 35.0% |
| ! | CTAGTAGTCTTAATAGATGC+AGG | - | chr1_2:78933679-78933698 | Msa0095120:intron | 35.0% |
| CAGAAAGTGATAACATACCT+TGG | + | chr1_2:78933708-78933727 | None:intergenic | 35.0% | |
| CAGCTTCTTCAACTTCAATT+CGG | + | chr1_2:78933761-78933780 | None:intergenic | 35.0% | |
| TGGCTAGAATTCACCTTATA+AGG | - | chr1_2:78933832-78933851 | Msa0095120:intron | 35.0% | |
| CAATGCATTGTTATATGCAG+GGG | + | chr1_2:78933892-78933911 | None:intergenic | 35.0% | |
| GACAATGCATTGTTATATGC+AGG | + | chr1_2:78933894-78933913 | None:intergenic | 35.0% | |
| GATAAGGTAGTAGAGAAGTG+TGG | + | chr1_2:78932131-78932150 | None:intergenic | 40.0% | |
| TCACATGTAAACGTGCAGTT+CGG | - | chr1_2:78932353-78932372 | Msa0095120:three_prime_UTR | 40.0% | |
| AGCCAGCAACTAAGAATCTT+AGG | - | chr1_2:78932408-78932427 | Msa0095120:CDS | 40.0% | |
| TCTAGCCCAATGTTTGTAGT+TGG | + | chr1_2:78932674-78932693 | None:intergenic | 40.0% | |
| ! | ATTGGGCTAGATAGAGTTGA+AGG | - | chr1_2:78932683-78932702 | Msa0095120:CDS | 40.0% |
| CAACAAACACCAAAAGATGG+TGG | - | chr1_2:78933138-78933157 | Msa0095120:intron | 40.0% | |
| GGAAATGGTCAATGTCTAAC+AGG | - | chr1_2:78933258-78933277 | Msa0095120:intron | 40.0% | |
| TGTCTAACAGGTGATTGCTT+TGG | - | chr1_2:78933270-78933289 | Msa0095120:intron | 40.0% | |
| AAACTACAATGTGCAGGACT+AGG | - | chr1_2:78933294-78933313 | Msa0095120:intron | 40.0% | |
| ACAGTTGTGGAAATGACACT+AGG | - | chr1_2:78933333-78933352 | Msa0095120:intron | 40.0% | |
| TCAATGAAACCTATTGGTGG+TGG | - | chr1_2:78933420-78933439 | Msa0095120:intron | 40.0% | |
| !! | AAACCTATTGGTGGTGGAAT+TGG | - | chr1_2:78933426-78933445 | Msa0095120:intron | 40.0% |
| !! | TCTTCACTTCAAGTGCTGAT+GGG | + | chr1_2:78933494-78933513 | None:intergenic | 40.0% |
| GCACTTGAAGTGAAGAGAAA+TGG | - | chr1_2:78933498-78933517 | Msa0095120:intron | 40.0% | |
| AGTGAAGAGAAATGGGAAAG+TGG | - | chr1_2:78933506-78933525 | Msa0095120:intron | 40.0% | |
| AAGAGAAATGGGAAAGTGGT+TGG | - | chr1_2:78933510-78933529 | Msa0095120:intron | 40.0% | |
| ! | TAGGGCAAATAGCCTTAAAG+AGG | + | chr1_2:78933632-78933651 | None:intergenic | 40.0% |
| !! | CTTTAAGGCTATTTGCCCTA+AGG | - | chr1_2:78933632-78933651 | Msa0095120:intron | 40.0% |
| CTTCAACTTCAATTCGGCAT+CGG | + | chr1_2:78933755-78933774 | None:intergenic | 40.0% | |
| TAAGGTGAATTCTAGCCACT+AGG | + | chr1_2:78933830-78933849 | None:intergenic | 40.0% | |
| GGGGACTTATTCACCTTATA+AGG | + | chr1_2:78933848-78933867 | None:intergenic | 40.0% | |
| GATAAGGTAGTAGAGAAGTG+TGG | + | chr1_2:78932131-78932150 | None:intergenic | 40.0% | |
| TCACATGTAAACGTGCAGTT+CGG | - | chr1_2:78932353-78932372 | Msa0095120:three_prime_UTR | 40.0% | |
| AGCCAGCAACTAAGAATCTT+AGG | - | chr1_2:78932408-78932427 | Msa0095120:CDS | 40.0% | |
| TCTAGCCCAATGTTTGTAGT+TGG | + | chr1_2:78932674-78932693 | None:intergenic | 40.0% | |
| ! | ATTGGGCTAGATAGAGTTGA+AGG | - | chr1_2:78932683-78932702 | Msa0095120:CDS | 40.0% |
| CAACAAACACCAAAAGATGG+TGG | - | chr1_2:78933138-78933157 | Msa0095120:intron | 40.0% | |
| GGAAATGGTCAATGTCTAAC+AGG | - | chr1_2:78933258-78933277 | Msa0095120:intron | 40.0% | |
| TGTCTAACAGGTGATTGCTT+TGG | - | chr1_2:78933270-78933289 | Msa0095120:intron | 40.0% | |
| AAACTACAATGTGCAGGACT+AGG | - | chr1_2:78933294-78933313 | Msa0095120:intron | 40.0% | |
| ACAGTTGTGGAAATGACACT+AGG | - | chr1_2:78933333-78933352 | Msa0095120:intron | 40.0% | |
| TCAATGAAACCTATTGGTGG+TGG | - | chr1_2:78933420-78933439 | Msa0095120:intron | 40.0% | |
| !! | AAACCTATTGGTGGTGGAAT+TGG | - | chr1_2:78933426-78933445 | Msa0095120:intron | 40.0% |
| !! | TCTTCACTTCAAGTGCTGAT+GGG | + | chr1_2:78933494-78933513 | None:intergenic | 40.0% |
| GCACTTGAAGTGAAGAGAAA+TGG | - | chr1_2:78933498-78933517 | Msa0095120:intron | 40.0% | |
| AGTGAAGAGAAATGGGAAAG+TGG | - | chr1_2:78933506-78933525 | Msa0095120:intron | 40.0% | |
| AAGAGAAATGGGAAAGTGGT+TGG | - | chr1_2:78933510-78933529 | Msa0095120:intron | 40.0% | |
| ! | TAGGGCAAATAGCCTTAAAG+AGG | + | chr1_2:78933632-78933651 | None:intergenic | 40.0% |
| !! | CTTTAAGGCTATTTGCCCTA+AGG | - | chr1_2:78933632-78933651 | Msa0095120:intron | 40.0% |
| CTTCAACTTCAATTCGGCAT+CGG | + | chr1_2:78933755-78933774 | None:intergenic | 40.0% | |
| TAAGGTGAATTCTAGCCACT+AGG | + | chr1_2:78933830-78933849 | None:intergenic | 40.0% | |
| GGGGACTTATTCACCTTATA+AGG | + | chr1_2:78933848-78933867 | None:intergenic | 40.0% | |
| TGTAAACGTGCAGTTCGGTT+CGG | - | chr1_2:78932358-78932377 | Msa0095120:three_prime_UTR | 45.0% | |
| ! | GTTCGGTCTAGCTCAATGTT+AGG | - | chr1_2:78932375-78932394 | Msa0095120:three_prime_UTR | 45.0% |
| GGGCAACAAACACCAAAAGA+TGG | - | chr1_2:78933135-78933154 | Msa0095120:intron | 45.0% | |
| ! | GGTGGATTTCATCTAGGTAG+CGG | - | chr1_2:78933156-78933175 | Msa0095120:intron | 45.0% |
| GGAAGAATTTGGGGAAGACA+AGG | - | chr1_2:78933216-78933235 | Msa0095120:intron | 45.0% | |
| ACATTCGACAACGACGGAAA+TGG | - | chr1_2:78933243-78933262 | Msa0095120:intron | 45.0% | |
| ATTTCCACAACTGTTGCTGG+TGG | + | chr1_2:78933327-78933346 | None:intergenic | 45.0% | |
| GTCATTTCCACAACTGTTGC+TGG | + | chr1_2:78933330-78933349 | None:intergenic | 45.0% | |
| CAACCAATTCCACCACCAAT+AGG | + | chr1_2:78933432-78933451 | None:intergenic | 45.0% | |
| !! | ATTGGTGGTGGAATTGGTTG+TGG | - | chr1_2:78933432-78933451 | Msa0095120:intron | 45.0% |
| !! | CTCTTCACTTCAAGTGCTGA+TGG | + | chr1_2:78933495-78933514 | None:intergenic | 45.0% |
| TTAATAGATGCAGGGCTCCA+AGG | - | chr1_2:78933688-78933707 | Msa0095120:intron | 45.0% | |
| ! | TCAATTCGGCATCGGAATTC+CGG | + | chr1_2:78933747-78933766 | None:intergenic | 45.0% |
| !! | TTTTTGGTCAGGTAGCCTAG+TGG | - | chr1_2:78933812-78933831 | Msa0095120:intron | 45.0% |
| TACCAACTGAGCTATGCTCA+CGG | - | chr1_2:78933915-78933934 | Msa0095120:intron | 45.0% | |
| TGTAAACGTGCAGTTCGGTT+CGG | - | chr1_2:78932358-78932377 | Msa0095120:three_prime_UTR | 45.0% | |
| ! | GTTCGGTCTAGCTCAATGTT+AGG | - | chr1_2:78932375-78932394 | Msa0095120:three_prime_UTR | 45.0% |
| GGGCAACAAACACCAAAAGA+TGG | - | chr1_2:78933135-78933154 | Msa0095120:intron | 45.0% | |
| ! | GGTGGATTTCATCTAGGTAG+CGG | - | chr1_2:78933156-78933175 | Msa0095120:intron | 45.0% |
| GGAAGAATTTGGGGAAGACA+AGG | - | chr1_2:78933216-78933235 | Msa0095120:intron | 45.0% | |
| ACATTCGACAACGACGGAAA+TGG | - | chr1_2:78933243-78933262 | Msa0095120:intron | 45.0% | |
| ATTTCCACAACTGTTGCTGG+TGG | + | chr1_2:78933327-78933346 | None:intergenic | 45.0% | |
| GTCATTTCCACAACTGTTGC+TGG | + | chr1_2:78933330-78933349 | None:intergenic | 45.0% | |
| CAACCAATTCCACCACCAAT+AGG | + | chr1_2:78933432-78933451 | None:intergenic | 45.0% | |
| !! | ATTGGTGGTGGAATTGGTTG+TGG | - | chr1_2:78933432-78933451 | Msa0095120:intron | 45.0% |
| !! | CTCTTCACTTCAAGTGCTGA+TGG | + | chr1_2:78933495-78933514 | None:intergenic | 45.0% |
| TTAATAGATGCAGGGCTCCA+AGG | - | chr1_2:78933688-78933707 | Msa0095120:intron | 45.0% | |
| ! | TCAATTCGGCATCGGAATTC+CGG | + | chr1_2:78933747-78933766 | None:intergenic | 45.0% |
| !! | TTTTTGGTCAGGTAGCCTAG+TGG | - | chr1_2:78933812-78933831 | Msa0095120:intron | 45.0% |
| TACCAACTGAGCTATGCTCA+CGG | - | chr1_2:78933915-78933934 | Msa0095120:intron | 45.0% | |
| ! | TGTGGAGAAAGTGTATGGCC+AGG | - | chr1_2:78933096-78933115 | Msa0095120:intron | 50.0% |
| ! | GTGGAGAAAGTGTATGGCCA+GGG | - | chr1_2:78933097-78933116 | Msa0095120:intron | 50.0% |
| AGTGTATGGCCAGGGATACT+AGG | - | chr1_2:78933105-78933124 | Msa0095120:intron | 50.0% | |
| CAGGGATACTAGGAGGATCA+GGG | - | chr1_2:78933115-78933134 | Msa0095120:intron | 50.0% | |
| GGTTGCACATTCGACAACGA+CGG | - | chr1_2:78933237-78933256 | Msa0095120:intron | 50.0% | |
| CTACAATGTGCAGGACTAGG+AGG | - | chr1_2:78933297-78933316 | Msa0095120:intron | 50.0% | |
| AGTTCCACCAGCAACAGTTG+TGG | - | chr1_2:78933320-78933339 | Msa0095120:intron | 50.0% | |
| CATCGGAATTCCGGTTACTG+CGG | + | chr1_2:78933738-78933757 | None:intergenic | 50.0% | |
| AGGTGAATAAGTCCCCTGTC+CGG | - | chr1_2:78933852-78933871 | Msa0095120:intron | 50.0% | |
| ATTGTTATATGCAGGGGCCG+GGG | + | chr1_2:78933886-78933905 | None:intergenic | 50.0% | |
| CATTGTTATATGCAGGGGCC+GGG | + | chr1_2:78933887-78933906 | None:intergenic | 50.0% | |
| GCATTGTTATATGCAGGGGC+CGG | + | chr1_2:78933888-78933907 | None:intergenic | 50.0% | |
| GTGAGCATAGCTCAGTTGGT+AGG | + | chr1_2:78933916-78933935 | None:intergenic | 50.0% | |
| ACCAACTGAGCTATGCTCAC+GGG | - | chr1_2:78933916-78933935 | Msa0095120:intron | 50.0% | |
| ! | TGTGGAGAAAGTGTATGGCC+AGG | - | chr1_2:78933096-78933115 | Msa0095120:intron | 50.0% |
| ! | GTGGAGAAAGTGTATGGCCA+GGG | - | chr1_2:78933097-78933116 | Msa0095120:intron | 50.0% |
| AGTGTATGGCCAGGGATACT+AGG | - | chr1_2:78933105-78933124 | Msa0095120:intron | 50.0% | |
| CAGGGATACTAGGAGGATCA+GGG | - | chr1_2:78933115-78933134 | Msa0095120:intron | 50.0% | |
| GGTTGCACATTCGACAACGA+CGG | - | chr1_2:78933237-78933256 | Msa0095120:intron | 50.0% | |
| CTACAATGTGCAGGACTAGG+AGG | - | chr1_2:78933297-78933316 | Msa0095120:intron | 50.0% | |
| AGTTCCACCAGCAACAGTTG+TGG | - | chr1_2:78933320-78933339 | Msa0095120:intron | 50.0% | |
| CATCGGAATTCCGGTTACTG+CGG | + | chr1_2:78933738-78933757 | None:intergenic | 50.0% | |
| AGGTGAATAAGTCCCCTGTC+CGG | - | chr1_2:78933852-78933871 | Msa0095120:intron | 50.0% | |
| ATTGTTATATGCAGGGGCCG+GGG | + | chr1_2:78933886-78933905 | None:intergenic | 50.0% | |
| CATTGTTATATGCAGGGGCC+GGG | + | chr1_2:78933887-78933906 | None:intergenic | 50.0% | |
| GCATTGTTATATGCAGGGGC+CGG | + | chr1_2:78933888-78933907 | None:intergenic | 50.0% | |
| GTGAGCATAGCTCAGTTGGT+AGG | + | chr1_2:78933916-78933935 | None:intergenic | 50.0% | |
| ACCAACTGAGCTATGCTCAC+GGG | - | chr1_2:78933916-78933935 | Msa0095120:intron | 50.0% | |
| GTATGGCCAGGGATACTAGG+AGG | - | chr1_2:78933108-78933127 | Msa0095120:intron | 55.0% | |
| CCTGATCCTCCTAGTATCCC+TGG | + | chr1_2:78933117-78933136 | None:intergenic | 55.0% | |
| CCAGGGATACTAGGAGGATC+AGG | - | chr1_2:78933114-78933133 | Msa0095120:intron | 55.0% | |
| GGTGAATAAGTCCCCTGTCC+GGG | - | chr1_2:78933853-78933872 | Msa0095120:intron | 55.0% | |
| GTGAATAAGTCCCCTGTCCG+GGG | - | chr1_2:78933854-78933873 | Msa0095120:intron | 55.0% | |
| TCCCGTGAGCATAGCTCAGT+TGG | + | chr1_2:78933920-78933939 | None:intergenic | 55.0% | |
| GTATGGCCAGGGATACTAGG+AGG | - | chr1_2:78933108-78933127 | Msa0095120:intron | 55.0% | |
| CCTGATCCTCCTAGTATCCC+TGG | + | chr1_2:78933117-78933136 | None:intergenic | 55.0% | |
| CCAGGGATACTAGGAGGATC+AGG | - | chr1_2:78933114-78933133 | Msa0095120:intron | 55.0% | |
| GGTGAATAAGTCCCCTGTCC+GGG | - | chr1_2:78933853-78933872 | Msa0095120:intron | 55.0% | |
| GTGAATAAGTCCCCTGTCCG+GGG | - | chr1_2:78933854-78933873 | Msa0095120:intron | 55.0% | |
| TCCCGTGAGCATAGCTCAGT+TGG | + | chr1_2:78933920-78933939 | None:intergenic | 55.0% | |
| AATTCCGGTTACTGCGGCGG+AGG | + | chr1_2:78933732-78933751 | None:intergenic | 60.0% | |
| CGGAATTCCGGTTACTGCGG+CGG | + | chr1_2:78933735-78933754 | None:intergenic | 60.0% | |
| AATTCCGGTTACTGCGGCGG+AGG | + | chr1_2:78933732-78933751 | None:intergenic | 60.0% | |
| CGGAATTCCGGTTACTGCGG+CGG | + | chr1_2:78933735-78933754 | None:intergenic | 60.0% | |
| CTGTCCTCCGCCGCAGTAAC+CGG | - | chr1_2:78933725-78933744 | Msa0095120:intron | 65.0% | |
| CTGTCCTCCGCCGCAGTAAC+CGG | - | chr1_2:78933725-78933744 | Msa0095120:intron | 65.0% | |
| GGGGTTCGAACCCCGGACAG+GGG | + | chr1_2:78933867-78933886 | None:intergenic | 70.0% | |
| CGGGGTTCGAACCCCGGACA+GGG | + | chr1_2:78933868-78933887 | None:intergenic | 70.0% | |
| CCTGTCCGGGGTTCGAACCC+CGG | - | chr1_2:78933866-78933885 | Msa0095120:intron | 70.0% | |
| GGGGTTCGAACCCCGGACAG+GGG | + | chr1_2:78933867-78933886 | None:intergenic | 70.0% | |
| CGGGGTTCGAACCCCGGACA+GGG | + | chr1_2:78933868-78933887 | None:intergenic | 70.0% | |
| CCTGTCCGGGGTTCGAACCC+CGG | - | chr1_2:78933866-78933885 | Msa0095120:intron | 70.0% | |
| CCGGGGTTCGAACCCCGGAC+AGG | + | chr1_2:78933869-78933888 | None:intergenic | 75.0% | |
| AGGGGCCGGGGTTCGAACCC+CGG | + | chr1_2:78933874-78933893 | None:intergenic | 75.0% | |
| CCGGGGTTCGAACCCCGGAC+AGG | + | chr1_2:78933869-78933888 | None:intergenic | 75.0% | |
| AGGGGCCGGGGTTCGAACCC+CGG | + | chr1_2:78933874-78933893 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 78932097 | 78934042 | 78932097 | ID=Msa0095120;Name=Msa0095120 |
| chr1_2 | mRNA | 78932097 | 78934042 | 78932097 | ID=Msa0095120-mRNA-1;Parent=Msa0095120;Name=Msa0095120-mRNA-1;_AED=0.09;_eAED=0.09;_QI=18|1|1|1|0.5|0.33|3|153|245 |
| chr1_2 | exon | 78932097 | 78932175 | 78932097 | ID=Msa0095120-mRNA-1:exon:28061;Parent=Msa0095120-mRNA-1 |
| chr1_2 | exon | 78932322 | 78933072 | 78932322 | ID=Msa0095120-mRNA-1:exon:28060;Parent=Msa0095120-mRNA-1 |
| chr1_2 | exon | 78933964 | 78934042 | 78933964 | ID=Msa0095120-mRNA-1:exon:28059;Parent=Msa0095120-mRNA-1 |
| chr1_2 | five_prime_UTR | 78934025 | 78934042 | 78934025 | ID=Msa0095120-mRNA-1:five_prime_utr;Parent=Msa0095120-mRNA-1 |
| chr1_2 | CDS | 78933964 | 78934024 | 78933964 | ID=Msa0095120-mRNA-1:cds;Parent=Msa0095120-mRNA-1 |
| chr1_2 | CDS | 78932396 | 78933072 | 78932396 | ID=Msa0095120-mRNA-1:cds;Parent=Msa0095120-mRNA-1 |
| chr1_2 | three_prime_UTR | 78932322 | 78932395 | 78932322 | ID=Msa0095120-mRNA-1:three_prime_utr;Parent=Msa0095120-mRNA-1 |
| chr1_2 | three_prime_UTR | 78932097 | 78932175 | 78932097 | ID=Msa0095120-mRNA-1:three_prime_utr;Parent=Msa0095120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
