Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1022530 | XP_013448907.1 | 97.959 | 245 | 5 | 0 | 1 | 245 | 1 | 245 | 1.93e-176 | 494 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1022530 | sp|Q53MB8|TLPH_ORYSJ | 67.421 | 221 | 71 | 1 | 24 | 243 | 30 | 250 | 1.87e-105 | 308 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1022530 | A0A072TZL3 | 97.959 | 245 | 5 | 0 | 1 | 245 | 1 | 245 | 9.20e-177 | 494 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095120 | Msa1022530 | 0.990014 | 1.144432e-180 | -8.615850e-47 |
| Msa1022530 | Msa1422860 | 0.826248 | 3.010818e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1022530 | MtrunA17_Chr7g0239131 | 97.959 | 245 | 5 | 0 | 1 | 245 | 1 | 245 | 1.77e-180 | 494 |
| Msa1022530 | MtrunA17_Chr3g0112091 | 67.647 | 238 | 76 | 1 | 7 | 243 | 1 | 238 | 4.54e-119 | 339 |
| Msa1022530 | MtrunA17_Chr8g0392961 | 49.587 | 242 | 115 | 3 | 5 | 242 | 7 | 245 | 4.55e-79 | 238 |
| Msa1022530 | MtrunA17_Chr6g0482741 | 47.479 | 238 | 120 | 2 | 7 | 242 | 6 | 240 | 6.89e-78 | 234 |
| Msa1022530 | MtrunA17_Chr8g0351851 | 49.569 | 232 | 114 | 2 | 11 | 241 | 8 | 237 | 9.26e-78 | 234 |
| Msa1022530 | MtrunA17_Chr3g0141341 | 47.556 | 225 | 116 | 2 | 19 | 242 | 8 | 231 | 2.24e-71 | 218 |
| Msa1022530 | MtrunA17_Chr8g0352471 | 45.902 | 244 | 128 | 3 | 2 | 242 | 5 | 247 | 8.25e-71 | 219 |
| Msa1022530 | MtrunA17_Chr1g0179851 | 48.899 | 227 | 111 | 5 | 19 | 242 | 15 | 239 | 1.05e-69 | 214 |
| Msa1022530 | MtrunA17_Chr1g0180231 | 47.541 | 244 | 120 | 6 | 2 | 242 | 4 | 242 | 1.27e-69 | 214 |
| Msa1022530 | MtrunA17_Chr1g0179871 | 47.541 | 244 | 120 | 6 | 2 | 242 | 4 | 242 | 1.27e-69 | 214 |
| Msa1022530 | MtrunA17_Chr1g0154591 | 47.210 | 233 | 121 | 2 | 11 | 242 | 1 | 232 | 1.55e-69 | 213 |
| Msa1022530 | MtrunA17_Chr5g0405581 | 45.490 | 255 | 128 | 6 | 1 | 245 | 1 | 254 | 2.50e-69 | 215 |
| Msa1022530 | MtrunA17_Chr8g0357311 | 45.679 | 243 | 128 | 3 | 3 | 242 | 6 | 247 | 1.72e-68 | 211 |
| Msa1022530 | MtrunA17_Chr1g0179891 | 48.458 | 227 | 112 | 5 | 19 | 242 | 13 | 237 | 4.22e-68 | 210 |
| Msa1022530 | MtrunA17_Chr1g0180221 | 46.531 | 245 | 125 | 6 | 1 | 242 | 41 | 282 | 7.45e-68 | 211 |
| Msa1022530 | MtrunA17_Chr5g0428801 | 43.802 | 242 | 129 | 3 | 7 | 242 | 10 | 250 | 1.44e-67 | 211 |
| Msa1022530 | MtrunA17_Chr8g0371781 | 46.154 | 234 | 117 | 3 | 16 | 241 | 21 | 253 | 1.67e-67 | 211 |
| Msa1022530 | MtrunA17_Chr5g0424221 | 46.544 | 217 | 108 | 3 | 25 | 241 | 31 | 239 | 9.38e-67 | 208 |
| Msa1022530 | MtrunA17_Chr1g0180121 | 43.673 | 245 | 130 | 6 | 1 | 242 | 3 | 242 | 2.40e-65 | 203 |
| Msa1022530 | MtrunA17_Chr5g0405611 | 46.930 | 228 | 108 | 5 | 18 | 242 | 91 | 308 | 5.46e-65 | 206 |
| Msa1022530 | MtrunA17_Chr7g0265011 | 45.536 | 224 | 117 | 5 | 22 | 242 | 66 | 287 | 1.02e-64 | 203 |
| Msa1022530 | MtrunA17_Chr4g0037331 | 43.750 | 240 | 129 | 3 | 3 | 241 | 5 | 239 | 1.30e-64 | 204 |
| Msa1022530 | MtrunA17_Chr1g0156711 | 45.783 | 249 | 129 | 6 | 1 | 244 | 1 | 248 | 1.41e-64 | 204 |
| Msa1022530 | MtrunA17_Chr6g0452331 | 42.972 | 249 | 135 | 4 | 1 | 242 | 4 | 252 | 8.39e-64 | 200 |
| Msa1022530 | MtrunA17_Chr1g0180161 | 43.725 | 247 | 127 | 8 | 1 | 242 | 3 | 242 | 2.23e-63 | 198 |
| Msa1022530 | MtrunA17_Chr3g0142781 | 47.500 | 240 | 120 | 6 | 8 | 242 | 11 | 249 | 3.13e-63 | 200 |
| Msa1022530 | MtrunA17_Chr2g0312181 | 47.534 | 223 | 113 | 4 | 23 | 242 | 22 | 243 | 1.25e-62 | 196 |
| Msa1022530 | MtrunA17_Chr8g0371771 | 43.460 | 237 | 124 | 5 | 7 | 241 | 15 | 243 | 2.03e-61 | 195 |
| Msa1022530 | MtrunA17_Chr2g0311521 | 41.532 | 248 | 138 | 5 | 1 | 242 | 1 | 247 | 1.54e-60 | 205 |
| Msa1022530 | MtrunA17_Chr4g0037351 | 43.089 | 246 | 131 | 5 | 7 | 244 | 6 | 250 | 1.87e-60 | 193 |
| Msa1022530 | MtrunA17_Chr2g0311561 | 43.556 | 225 | 123 | 4 | 21 | 242 | 9 | 232 | 1.36e-55 | 179 |
| Msa1022530 | MtrunA17_Chr2g0311551 | 40.611 | 229 | 132 | 4 | 17 | 242 | 17 | 244 | 1.40e-53 | 185 |
| Msa1022530 | MtrunA17_Chr4g0031221 | 37.344 | 241 | 141 | 5 | 6 | 241 | 16 | 251 | 1.22e-52 | 171 |
| Msa1022530 | MtrunA17_Chr5g0397831 | 36.694 | 248 | 132 | 8 | 3 | 242 | 6 | 236 | 3.35e-46 | 154 |
| Msa1022530 | MtrunA17_Chr5g0397821 | 38.914 | 221 | 115 | 7 | 23 | 242 | 24 | 225 | 9.60e-42 | 142 |
| Msa1022530 | MtrunA17_Chr8g0386341 | 35.983 | 239 | 129 | 9 | 6 | 242 | 32 | 248 | 4.19e-41 | 141 |
| Msa1022530 | MtrunA17_Chr2g0311501 | 38.889 | 180 | 101 | 6 | 69 | 242 | 6 | 182 | 1.53e-36 | 128 |
| Msa1022530 | MtrunA17_Chr2g0311531 | 36.771 | 223 | 111 | 10 | 23 | 242 | 27 | 222 | 4.26e-35 | 125 |
| Msa1022530 | MtrunA17_Chr2g0309611 | 32.203 | 236 | 137 | 7 | 6 | 225 | 7 | 235 | 5.27e-35 | 125 |
| Msa1022530 | MtrunA17_Chr1g0179911 | 32.432 | 222 | 129 | 7 | 29 | 242 | 30 | 238 | 2.01e-30 | 113 |
| Msa1022530 | MtrunA17_Chr5g0406771 | 36.994 | 173 | 100 | 6 | 17 | 181 | 4 | 175 | 5.66e-30 | 110 |
| Msa1022530 | MtrunA17_Chr8g0386351 | 37.640 | 178 | 96 | 8 | 1 | 177 | 43 | 206 | 5.41e-27 | 103 |
| Msa1022530 | MtrunA17_Chr1g0180181 | 48.837 | 86 | 42 | 2 | 159 | 242 | 14 | 99 | 1.50e-19 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1022530 | AT5G02140.1 | 76.230 | 244 | 55 | 2 | 1 | 243 | 1 | 242 | 3.30e-132 | 375 |
| Msa1022530 | AT5G02140.2 | 76.230 | 244 | 55 | 2 | 1 | 243 | 1 | 242 | 8.89e-132 | 372 |
| Msa1022530 | AT1G18250.1 | 51.786 | 224 | 103 | 3 | 21 | 242 | 19 | 239 | 1.76e-76 | 231 |
| Msa1022530 | AT1G18250.2 | 52.252 | 222 | 101 | 3 | 23 | 242 | 22 | 240 | 2.12e-76 | 231 |
| Msa1022530 | AT1G19320.1 | 48.770 | 244 | 118 | 4 | 3 | 241 | 5 | 246 | 7.25e-76 | 230 |
| Msa1022530 | AT1G75030.1 | 48.163 | 245 | 122 | 4 | 1 | 242 | 1 | 243 | 1.61e-75 | 229 |
| Msa1022530 | AT1G73620.1 | 50.893 | 224 | 105 | 3 | 21 | 242 | 40 | 260 | 4.21e-75 | 229 |
| Msa1022530 | AT5G24620.1 | 45.020 | 251 | 129 | 3 | 1 | 242 | 1 | 251 | 7.74e-75 | 233 |
| Msa1022530 | AT5G24620.4 | 45.020 | 251 | 129 | 3 | 1 | 242 | 56 | 306 | 3.89e-74 | 233 |
| Msa1022530 | AT5G24620.3 | 45.020 | 251 | 129 | 3 | 1 | 242 | 77 | 327 | 6.19e-74 | 233 |
| Msa1022530 | AT1G75800.1 | 45.935 | 246 | 125 | 5 | 7 | 245 | 7 | 251 | 2.67e-69 | 216 |
| Msa1022530 | AT4G38660.1 | 45.041 | 242 | 126 | 4 | 2 | 242 | 10 | 245 | 4.67e-69 | 216 |
| Msa1022530 | AT4G38660.2 | 46.847 | 222 | 112 | 3 | 22 | 242 | 7 | 223 | 2.81e-68 | 213 |
| Msa1022530 | AT1G77700.3 | 45.339 | 236 | 120 | 4 | 7 | 241 | 44 | 271 | 5.76e-68 | 213 |
| Msa1022530 | AT1G77700.2 | 45.339 | 236 | 120 | 4 | 7 | 241 | 44 | 271 | 5.77e-68 | 212 |
| Msa1022530 | AT1G75050.1 | 46.639 | 238 | 121 | 5 | 8 | 242 | 9 | 243 | 2.13e-67 | 209 |
| Msa1022530 | AT1G77700.1 | 47.465 | 217 | 106 | 3 | 25 | 241 | 91 | 299 | 3.91e-67 | 211 |
| Msa1022530 | AT1G75040.1 | 46.809 | 235 | 121 | 4 | 8 | 242 | 9 | 239 | 1.73e-66 | 206 |
| Msa1022530 | AT1G20030.1 | 46.288 | 229 | 115 | 5 | 24 | 245 | 4 | 231 | 3.17e-64 | 202 |
| Msa1022530 | AT4G24180.5 | 44.223 | 251 | 123 | 6 | 6 | 242 | 4 | 251 | 3.35e-64 | 201 |
| Msa1022530 | AT1G20030.2 | 46.288 | 229 | 115 | 5 | 24 | 245 | 21 | 248 | 4.70e-64 | 202 |
| Msa1022530 | AT4G24180.2 | 44.223 | 251 | 123 | 6 | 6 | 242 | 4 | 251 | 9.44e-64 | 201 |
| Msa1022530 | AT4G24180.6 | 43.673 | 245 | 126 | 6 | 7 | 242 | 15 | 256 | 9.92e-64 | 200 |
| Msa1022530 | AT4G24180.1 | 43.673 | 245 | 126 | 6 | 7 | 242 | 15 | 256 | 2.30e-63 | 201 |
| Msa1022530 | AT2G17860.1 | 42.917 | 240 | 125 | 6 | 17 | 245 | 14 | 252 | 3.86e-62 | 195 |
| Msa1022530 | AT4G38670.3 | 43.265 | 245 | 131 | 7 | 7 | 244 | 6 | 249 | 1.71e-61 | 194 |
| Msa1022530 | AT4G38670.1 | 43.265 | 245 | 131 | 7 | 7 | 244 | 6 | 249 | 1.71e-61 | 194 |
| Msa1022530 | AT5G40020.1 | 40.816 | 245 | 140 | 2 | 3 | 242 | 4 | 248 | 4.75e-61 | 192 |
| Msa1022530 | AT4G38670.2 | 44.156 | 231 | 122 | 6 | 20 | 244 | 4 | 233 | 6.19e-60 | 190 |
| Msa1022530 | AT4G36010.1 | 43.404 | 235 | 123 | 5 | 20 | 245 | 20 | 253 | 7.39e-60 | 191 |
| Msa1022530 | AT4G36010.2 | 43.404 | 235 | 123 | 5 | 20 | 245 | 20 | 253 | 7.39e-60 | 191 |
| Msa1022530 | AT4G24180.4 | 43.983 | 241 | 118 | 6 | 6 | 232 | 4 | 241 | 1.00e-59 | 191 |
| Msa1022530 | AT4G24180.3 | 43.697 | 238 | 118 | 7 | 8 | 232 | 12 | 246 | 2.11e-59 | 191 |
| Msa1022530 | AT5G38280.1 | 39.344 | 244 | 140 | 5 | 6 | 242 | 8 | 250 | 2.42e-53 | 182 |
| Msa1022530 | AT5G38280.2 | 39.344 | 244 | 140 | 5 | 6 | 242 | 8 | 250 | 2.92e-53 | 182 |
| Msa1022530 | AT2G28790.2 | 39.149 | 235 | 138 | 5 | 11 | 241 | 40 | 273 | 3.33e-52 | 171 |
| Msa1022530 | AT2G28790.1 | 39.149 | 235 | 138 | 5 | 11 | 241 | 15 | 248 | 4.23e-52 | 169 |
| Msa1022530 | AT4G11650.1 | 37.500 | 240 | 126 | 8 | 7 | 242 | 4 | 223 | 9.90e-43 | 145 |
| Msa1022530 | AT4G36000.2 | 49.655 | 145 | 66 | 4 | 98 | 242 | 1 | 138 | 2.16e-41 | 141 |
| Msa1022530 | AT4G36000.1 | 49.655 | 145 | 66 | 4 | 98 | 242 | 1 | 138 | 2.16e-41 | 141 |
| Msa1022530 | AT4G18253.1 | 33.613 | 238 | 145 | 4 | 11 | 242 | 8 | 238 | 1.76e-39 | 137 |
| Msa1022530 | AT1G70250.1 | 35.714 | 224 | 127 | 8 | 29 | 242 | 151 | 367 | 3.63e-34 | 130 |
| Msa1022530 | AT4G18250.1 | 34.728 | 239 | 142 | 8 | 11 | 242 | 41 | 272 | 3.70e-34 | 130 |
| Msa1022530 | AT5G24620.2 | 46.667 | 120 | 57 | 2 | 130 | 242 | 15 | 134 | 5.98e-32 | 119 |
| Msa1022530 | AT2G24810.1 | 51.948 | 77 | 35 | 1 | 167 | 241 | 116 | 192 | 2.25e-19 | 83.2 |
Find 62 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATTCGGCATCGGAATTC+CGG | 0.289182 | 7_1:+48812799 | None:intergenic |
| AAAATGGTCAGGAAGAATTT+GGG | 0.307745 | 7_1:-48813337 | Msa1022530:CDS |
| AGATGAAATCCACCATCTTT+TGG | 0.315793 | 7_1:+48813396 | None:intergenic |
| TATGATGTAAGCTTAGTTGA+TGG | 0.343981 | 7_1:-48813162 | Msa1022530:CDS |
| CCAATAGGTTTCATTGAAAC+AGG | 0.361897 | 7_1:+48813129 | None:intergenic |
| CCTGTTTCAATGAAACCTAT+TGG | 0.368230 | 7_1:-48813129 | Msa1022530:CDS |
| CTGTCCTCCGCCGCAGTAAC+CGG | 0.368507 | 7_1:-48812818 | Msa1022530:exon |
| GCACTTGAAGTGAAGAGAAA+TGG | 0.377986 | 7_1:-48813045 | Msa1022530:CDS |
| GTCATTTCCACAACTGTTGC+TGG | 0.386230 | 7_1:+48813216 | None:intergenic |
| TAAGCATAACTATATGCCTT+AGG | 0.387568 | 7_1:+48812895 | None:intergenic |
| CTCTTCACTTCAAGTGCTGA+TGG | 0.392487 | 7_1:+48813051 | None:intergenic |
| AAACCTATTGGTGGTGGAAT+TGG | 0.394141 | 7_1:-48813117 | Msa1022530:CDS |
| CAGCTTCTTCAACTTCAATT+CGG | 0.397898 | 7_1:+48812785 | None:intergenic |
| CAACCAATTCCACCACCAAT+AGG | 0.409025 | 7_1:+48813114 | None:intergenic |
| TGGTTGTAAAAGTGCTTGTT+TGG | 0.416016 | 7_1:-48813013 | Msa1022530:CDS |
| ACATTCGACAACGACGGAAA+TGG | 0.420855 | 7_1:-48813300 | Msa1022530:CDS |
| CCAGGGATACTAGGAGGATC+AGG | 0.420885 | 7_1:-48813429 | Msa1022530:CDS |
| GGAAATGGTCAATGTCTAAC+AGG | 0.424145 | 7_1:-48813285 | Msa1022530:CDS |
| CTAGTAGTCTTAATAGATGC+AGG | 0.437595 | 7_1:-48812864 | Msa1022530:CDS |
| TGTCTAACAGGTGATTGCTT+TGG | 0.446481 | 7_1:-48813273 | Msa1022530:CDS |
| CACTTGAAGTGAAGAGAAAT+GGG | 0.447542 | 7_1:-48813044 | Msa1022530:CDS |
| CTTCAACTTCAATTCGGCAT+CGG | 0.462918 | 7_1:+48812791 | None:intergenic |
| CCTGATCCTCCTAGTATCCC+TGG | 0.482293 | 7_1:+48813429 | None:intergenic |
| CTTTAAGGCTATTTGCCCTA+AGG | 0.485832 | 7_1:-48812911 | Msa1022530:CDS |
| TCTGCTAAATATTGTTGCAC+TGG | 0.488075 | 7_1:-48812982 | Msa1022530:CDS |
| AAGCATAACTATATGCCTTA+GGG | 0.496697 | 7_1:+48812896 | None:intergenic |
| AAAGATGGTGGATTTCATCT+AGG | 0.501778 | 7_1:-48813393 | Msa1022530:CDS |
| AGTGTATGGCCAGGGATACT+AGG | 0.502194 | 7_1:-48813438 | Msa1022530:CDS |
| ATTGGTGGTGGAATTGGTTG+TGG | 0.508712 | 7_1:-48813111 | Msa1022530:CDS |
| CTTACATCATAGAAATGTAA+TGG | 0.510308 | 7_1:+48813174 | None:intergenic |
| TGTGGAGAAAGTGTATGGCC+AGG | 0.520362 | 7_1:-48813447 | Msa1022530:CDS |
| TAGGGCAAATAGCCTTAAAG+AGG | 0.522958 | 7_1:+48812914 | None:intergenic |
| TGATTGAGCAAAAGACGATA+AGG | 0.531414 | 7_1:+48814399 | None:intergenic |
| TCTTCACTTCAAGTGCTGAT+GGG | 0.532613 | 7_1:+48813052 | None:intergenic |
| TTAATAGATGCAGGGCTCCA+AGG | 0.543473 | 7_1:-48812855 | Msa1022530:CDS |
| AATTCCGGTTACTGCGGCGG+AGG | 0.549034 | 7_1:+48812814 | None:intergenic |
| CTAATTCTAGTGAACAATTG+TGG | 0.556438 | 7_1:-48813465 | Msa1022530:CDS |
| TTTGGTAAACTACAATGTGC+AGG | 0.556520 | 7_1:-48813255 | Msa1022530:CDS |
| AAACTACAATGTGCAGGACT+AGG | 0.558867 | 7_1:-48813249 | Msa1022530:CDS |
| CAGAAAGTGATAACATACCT+TGG | 0.563677 | 7_1:+48812838 | None:intergenic |
| CGGAATTCCGGTTACTGCGG+CGG | 0.578281 | 7_1:+48812811 | None:intergenic |
| GGAAGAATTTGGGGAAGACA+AGG | 0.583708 | 7_1:-48813327 | Msa1022530:CDS |
| GATAAGGTAGTAGAGAAGTG+TGG | 0.586789 | 7_1:+48814415 | None:intergenic |
| TCAATGAAACCTATTGGTGG+TGG | 0.586853 | 7_1:-48813123 | Msa1022530:CDS |
| ACAATTGTGGAGAAAGTGTA+TGG | 0.589098 | 7_1:-48813452 | Msa1022530:CDS |
| CAGGGATACTAGGAGGATCA+GGG | 0.590085 | 7_1:-48813428 | Msa1022530:CDS |
| GTGGAGAAAGTGTATGGCCA+GGG | 0.593552 | 7_1:-48813446 | Msa1022530:CDS |
| GGGCAACAAACACCAAAAGA+TGG | 0.593797 | 7_1:-48813408 | Msa1022530:CDS |
| AGTTCCACCAGCAACAGTTG+TGG | 0.601349 | 7_1:-48813223 | Msa1022530:CDS |
| AGTGAAGAGAAATGGGAAAG+TGG | 0.602541 | 7_1:-48813037 | Msa1022530:CDS |
| GGTGGATTTCATCTAGGTAG+CGG | 0.605118 | 7_1:-48813387 | Msa1022530:CDS |
| TAGTAGTCTTAATAGATGCA+GGG | 0.620726 | 7_1:-48812863 | Msa1022530:CDS |
| AAGAGAAATGGGAAAGTGGT+TGG | 0.627116 | 7_1:-48813033 | Msa1022530:CDS |
| CAACAAACACCAAAAGATGG+TGG | 0.639516 | 7_1:-48813405 | Msa1022530:CDS |
| GTTTCAATGAAACCTATTGG+TGG | 0.642342 | 7_1:-48813126 | Msa1022530:CDS |
| ATTTCCACAACTGTTGCTGG+TGG | 0.648087 | 7_1:+48813219 | None:intergenic |
| AAATGGTCAGGAAGAATTTG+GGG | 0.648322 | 7_1:-48813336 | Msa1022530:CDS |
| CATCGGAATTCCGGTTACTG+CGG | 0.651362 | 7_1:+48812808 | None:intergenic |
| ACAGTTGTGGAAATGACACT+AGG | 0.669401 | 7_1:-48813210 | Msa1022530:CDS |
| CTACAATGTGCAGGACTAGG+AGG | 0.671127 | 7_1:-48813246 | Msa1022530:CDS |
| GTATGGCCAGGGATACTAGG+AGG | 0.694254 | 7_1:-48813435 | Msa1022530:CDS |
| GGTTGCACATTCGACAACGA+CGG | 0.722930 | 7_1:-48813306 | Msa1022530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATTTGTATAATATAAAA+AGG | + | chr7_1:48812756-48812775 | None:intergenic | 10.0% |
| !!! | AAAGATTATGTTTTTTTTTT+TGG | - | chr7_1:48814220-48814239 | Msa1022530:intron | 10.0% |
| !!! | ATGATTTGTATAATATAAAA+AGG | + | chr7_1:48812756-48812775 | None:intergenic | 10.0% |
| !!! | AAAGATTATGTTTTTTTTTT+TGG | - | chr7_1:48814220-48814239 | Msa1022530:intron | 10.0% |
| !!! | TATATTAGAAGTTTTTTGTT+AGG | + | chr7_1:48812661-48812680 | None:intergenic | 15.0% |
| !! | GACATAATTAAAATAGTATT+TGG | - | chr7_1:48813194-48813213 | Msa1022530:CDS | 15.0% |
| !!! | TATATTAGAAGTTTTTTGTT+AGG | + | chr7_1:48812661-48812680 | None:intergenic | 15.0% |
| !! | GACATAATTAAAATAGTATT+TGG | - | chr7_1:48813194-48813213 | Msa1022530:CDS | 15.0% |
| !! | AAGTAAATTGTTTACTTTAG+AGG | + | chr7_1:48813238-48813257 | None:intergenic | 20.0% |
| !!! | AACTATTGATTTGTTTATCA+CGG | + | chr7_1:48813283-48813302 | None:intergenic | 20.0% |
| !! | TATTAGATGTACAAGAAAAA+TGG | - | chr7_1:48813614-48813633 | Msa1022530:intron | 20.0% |
| !!! | TTATGTTTTTTTTTTTGGTC+AGG | - | chr7_1:48814225-48814244 | Msa1022530:intron | 20.0% |
| !! | AAGTAAATTGTTTACTTTAG+AGG | + | chr7_1:48813238-48813257 | None:intergenic | 20.0% |
| !!! | AACTATTGATTTGTTTATCA+CGG | + | chr7_1:48813283-48813302 | None:intergenic | 20.0% |
| !! | TATTAGATGTACAAGAAAAA+TGG | - | chr7_1:48813614-48813633 | Msa1022530:intron | 20.0% |
| !!! | TTATGTTTTTTTTTTTGGTC+AGG | - | chr7_1:48814225-48814244 | Msa1022530:intron | 20.0% |
| !! | CATTTTTCTTGAGAATCATA+TGG | - | chr7_1:48813002-48813021 | Msa1022530:CDS | 25.0% |
| !!! | TTCAACACAAACATGTTTTT+TGG | + | chr7_1:48813034-48813053 | None:intergenic | 25.0% |
| ! | TAAATAACCAACTATGTGTT+TGG | + | chr7_1:48813068-48813087 | None:intergenic | 25.0% |
| ! | TAGAATTTATGTGCATGATT+GGG | + | chr7_1:48813395-48813414 | None:intergenic | 25.0% |
| ! | CTTACATCATAGAAATGTAA+TGG | + | chr7_1:48813796-48813815 | None:intergenic | 25.0% |
| !! | CATTTTTCTTGAGAATCATA+TGG | - | chr7_1:48813002-48813021 | Msa1022530:CDS | 25.0% |
| !!! | TTCAACACAAACATGTTTTT+TGG | + | chr7_1:48813034-48813053 | None:intergenic | 25.0% |
| ! | TAAATAACCAACTATGTGTT+TGG | + | chr7_1:48813068-48813087 | None:intergenic | 25.0% |
| ! | TAGAATTTATGTGCATGATT+GGG | + | chr7_1:48813395-48813414 | None:intergenic | 25.0% |
| ! | CTTACATCATAGAAATGTAA+TGG | + | chr7_1:48813796-48813815 | None:intergenic | 25.0% |
| ! | TTTTGCTCAATCATTCTCAT+AGG | - | chr7_1:48812578-48812597 | Msa1022530:three_prime_UTR | 30.0% |
| CTAAGAATCTTAGGTTTGTA+TGG | - | chr7_1:48812841-48812860 | Msa1022530:CDS | 30.0% | |
| GTATAAATGTGAATGTTTCG+AGG | + | chr7_1:48812938-48812957 | None:intergenic | 30.0% | |
| AGTTTAACCAAACACATAGT+TGG | - | chr7_1:48813058-48813077 | Msa1022530:CDS | 30.0% | |
| ATTGATCCAACTACAAACAT+TGG | - | chr7_1:48813089-48813108 | Msa1022530:CDS | 30.0% | |
| TTGATCCAACTACAAACATT+GGG | - | chr7_1:48813090-48813109 | Msa1022530:CDS | 30.0% | |
| !! | AAATAGTATTTGGTGCATAG+AGG | - | chr7_1:48813204-48813223 | Msa1022530:CDS | 30.0% |
| ACGTGCATAATAAATCATGA+TGG | - | chr7_1:48813315-48813334 | Msa1022530:CDS | 30.0% | |
| GTAGAATTTATGTGCATGAT+TGG | + | chr7_1:48813396-48813415 | None:intergenic | 30.0% | |
| TATCTATTGTTTGATGCAGA+TGG | - | chr7_1:48813472-48813491 | Msa1022530:CDS | 30.0% | |
| CTAATTCTAGTGAACAATTG+TGG | - | chr7_1:48813502-48813521 | Msa1022530:intron | 30.0% | |
| AAAAATGGTCAGGAAGAATT+TGG | - | chr7_1:48813629-48813648 | Msa1022530:intron | 30.0% | |
| AAAATGGTCAGGAAGAATTT+GGG | - | chr7_1:48813630-48813649 | Msa1022530:intron | 30.0% | |
| TATGATGTAAGCTTAGTTGA+TGG | - | chr7_1:48813805-48813824 | Msa1022530:intron | 30.0% | |
| ! | AGTGTAGGTTTACAAGTTTT+AGG | + | chr7_1:48814024-48814043 | None:intergenic | 30.0% |
| ! | ACTTTTTGCTAACCTCTTTA+AGG | - | chr7_1:48814041-48814060 | Msa1022530:intron | 30.0% |
| AAGCATAACTATATGCCTTA+GGG | + | chr7_1:48814074-48814093 | None:intergenic | 30.0% | |
| TAAGCATAACTATATGCCTT+AGG | + | chr7_1:48814075-48814094 | None:intergenic | 30.0% | |
| ! | TAGTAGTCTTAATAGATGCA+GGG | - | chr7_1:48814104-48814123 | Msa1022530:intron | 30.0% |
| ACAATGCATTGTTATATGCA+GGG | + | chr7_1:48814317-48814336 | None:intergenic | 30.0% | |
| ! | TTTTGCTCAATCATTCTCAT+AGG | - | chr7_1:48812578-48812597 | Msa1022530:three_prime_UTR | 30.0% |
| CTAAGAATCTTAGGTTTGTA+TGG | - | chr7_1:48812841-48812860 | Msa1022530:CDS | 30.0% | |
| GTATAAATGTGAATGTTTCG+AGG | + | chr7_1:48812938-48812957 | None:intergenic | 30.0% | |
| AGTTTAACCAAACACATAGT+TGG | - | chr7_1:48813058-48813077 | Msa1022530:CDS | 30.0% | |
| ATTGATCCAACTACAAACAT+TGG | - | chr7_1:48813089-48813108 | Msa1022530:CDS | 30.0% | |
| TTGATCCAACTACAAACATT+GGG | - | chr7_1:48813090-48813109 | Msa1022530:CDS | 30.0% | |
| !! | AAATAGTATTTGGTGCATAG+AGG | - | chr7_1:48813204-48813223 | Msa1022530:CDS | 30.0% |
| ACGTGCATAATAAATCATGA+TGG | - | chr7_1:48813315-48813334 | Msa1022530:CDS | 30.0% | |
| GTAGAATTTATGTGCATGAT+TGG | + | chr7_1:48813396-48813415 | None:intergenic | 30.0% | |
| TATCTATTGTTTGATGCAGA+TGG | - | chr7_1:48813472-48813491 | Msa1022530:CDS | 30.0% | |
| CTAATTCTAGTGAACAATTG+TGG | - | chr7_1:48813502-48813521 | Msa1022530:intron | 30.0% | |
| AAAAATGGTCAGGAAGAATT+TGG | - | chr7_1:48813629-48813648 | Msa1022530:intron | 30.0% | |
| AAAATGGTCAGGAAGAATTT+GGG | - | chr7_1:48813630-48813649 | Msa1022530:intron | 30.0% | |
| TATGATGTAAGCTTAGTTGA+TGG | - | chr7_1:48813805-48813824 | Msa1022530:intron | 30.0% | |
| ! | AGTGTAGGTTTACAAGTTTT+AGG | + | chr7_1:48814024-48814043 | None:intergenic | 30.0% |
| ! | ACTTTTTGCTAACCTCTTTA+AGG | - | chr7_1:48814041-48814060 | Msa1022530:intron | 30.0% |
| AAGCATAACTATATGCCTTA+GGG | + | chr7_1:48814074-48814093 | None:intergenic | 30.0% | |
| TAAGCATAACTATATGCCTT+AGG | + | chr7_1:48814075-48814094 | None:intergenic | 30.0% | |
| ! | TAGTAGTCTTAATAGATGCA+GGG | - | chr7_1:48814104-48814123 | Msa1022530:intron | 30.0% |
| ACAATGCATTGTTATATGCA+GGG | + | chr7_1:48814317-48814336 | None:intergenic | 30.0% | |
| TGATTGAGCAAAAGACGATA+AGG | + | chr7_1:48812571-48812590 | None:intergenic | 35.0% | |
| AACCTAAGATTCTTAGTTGC+TGG | + | chr7_1:48812837-48812856 | None:intergenic | 35.0% | |
| ! | ACAATTGTGGAGAAAGTGTA+TGG | - | chr7_1:48813515-48813534 | Msa1022530:intron | 35.0% |
| ! | AGATGAAATCCACCATCTTT+TGG | + | chr7_1:48813574-48813593 | None:intergenic | 35.0% |
| !! | AAAGATGGTGGATTTCATCT+AGG | - | chr7_1:48813574-48813593 | Msa1022530:intron | 35.0% |
| GATGTACAAGAAAAATGGTC+AGG | - | chr7_1:48813619-48813638 | Msa1022530:intron | 35.0% | |
| AAATGGTCAGGAAGAATTTG+GGG | - | chr7_1:48813631-48813650 | Msa1022530:intron | 35.0% | |
| TTTGGTAAACTACAATGTGC+AGG | - | chr7_1:48813712-48813731 | Msa1022530:intron | 35.0% | |
| CCAATAGGTTTCATTGAAAC+AGG | + | chr7_1:48813841-48813860 | None:intergenic | 35.0% | |
| CCTGTTTCAATGAAACCTAT+TGG | - | chr7_1:48813838-48813857 | Msa1022530:intron | 35.0% | |
| GTTTCAATGAAACCTATTGG+TGG | - | chr7_1:48813841-48813860 | Msa1022530:intron | 35.0% | |
| CACTTGAAGTGAAGAGAAAT+GGG | - | chr7_1:48813923-48813942 | Msa1022530:intron | 35.0% | |
| !! | TGGTTGTAAAAGTGCTTGTT+TGG | - | chr7_1:48813954-48813973 | Msa1022530:intron | 35.0% |
| TCTGCTAAATATTGTTGCAC+TGG | - | chr7_1:48813985-48814004 | Msa1022530:intron | 35.0% | |
| ! | AAGAGGTTAGCAAAAAGTGT+AGG | + | chr7_1:48814039-48814058 | None:intergenic | 35.0% |
| ! | CTAGTAGTCTTAATAGATGC+AGG | - | chr7_1:48814103-48814122 | Msa1022530:intron | 35.0% |
| CAGAAAGTGATAACATACCT+TGG | + | chr7_1:48814132-48814151 | None:intergenic | 35.0% | |
| CAGCTTCTTCAACTTCAATT+CGG | + | chr7_1:48814185-48814204 | None:intergenic | 35.0% | |
| TGGCTAGAATTCACCTTATA+AGG | - | chr7_1:48814256-48814275 | Msa1022530:intron | 35.0% | |
| CAATGCATTGTTATATGCAG+GGG | + | chr7_1:48814316-48814335 | None:intergenic | 35.0% | |
| GACAATGCATTGTTATATGC+AGG | + | chr7_1:48814318-48814337 | None:intergenic | 35.0% | |
| TGATTGAGCAAAAGACGATA+AGG | + | chr7_1:48812571-48812590 | None:intergenic | 35.0% | |
| AACCTAAGATTCTTAGTTGC+TGG | + | chr7_1:48812837-48812856 | None:intergenic | 35.0% | |
| ! | ACAATTGTGGAGAAAGTGTA+TGG | - | chr7_1:48813515-48813534 | Msa1022530:intron | 35.0% |
| ! | AGATGAAATCCACCATCTTT+TGG | + | chr7_1:48813574-48813593 | None:intergenic | 35.0% |
| !! | AAAGATGGTGGATTTCATCT+AGG | - | chr7_1:48813574-48813593 | Msa1022530:intron | 35.0% |
| GATGTACAAGAAAAATGGTC+AGG | - | chr7_1:48813619-48813638 | Msa1022530:intron | 35.0% | |
| AAATGGTCAGGAAGAATTTG+GGG | - | chr7_1:48813631-48813650 | Msa1022530:intron | 35.0% | |
| TTTGGTAAACTACAATGTGC+AGG | - | chr7_1:48813712-48813731 | Msa1022530:intron | 35.0% | |
| CCAATAGGTTTCATTGAAAC+AGG | + | chr7_1:48813841-48813860 | None:intergenic | 35.0% | |
| CCTGTTTCAATGAAACCTAT+TGG | - | chr7_1:48813838-48813857 | Msa1022530:intron | 35.0% | |
| GTTTCAATGAAACCTATTGG+TGG | - | chr7_1:48813841-48813860 | Msa1022530:intron | 35.0% | |
| CACTTGAAGTGAAGAGAAAT+GGG | - | chr7_1:48813923-48813942 | Msa1022530:intron | 35.0% | |
| !! | TGGTTGTAAAAGTGCTTGTT+TGG | - | chr7_1:48813954-48813973 | Msa1022530:intron | 35.0% |
| TCTGCTAAATATTGTTGCAC+TGG | - | chr7_1:48813985-48814004 | Msa1022530:intron | 35.0% | |
| ! | AAGAGGTTAGCAAAAAGTGT+AGG | + | chr7_1:48814039-48814058 | None:intergenic | 35.0% |
| ! | CTAGTAGTCTTAATAGATGC+AGG | - | chr7_1:48814103-48814122 | Msa1022530:intron | 35.0% |
| CAGAAAGTGATAACATACCT+TGG | + | chr7_1:48814132-48814151 | None:intergenic | 35.0% | |
| CAGCTTCTTCAACTTCAATT+CGG | + | chr7_1:48814185-48814204 | None:intergenic | 35.0% | |
| TGGCTAGAATTCACCTTATA+AGG | - | chr7_1:48814256-48814275 | Msa1022530:intron | 35.0% | |
| CAATGCATTGTTATATGCAG+GGG | + | chr7_1:48814316-48814335 | None:intergenic | 35.0% | |
| GACAATGCATTGTTATATGC+AGG | + | chr7_1:48814318-48814337 | None:intergenic | 35.0% | |
| GATAAGGTAGTAGAGAAGTG+TGG | + | chr7_1:48812555-48812574 | None:intergenic | 40.0% | |
| TCACATGTAAACGTGCAGTT+CGG | - | chr7_1:48812777-48812796 | Msa1022530:three_prime_UTR | 40.0% | |
| AGCCAGCAACTAAGAATCTT+AGG | - | chr7_1:48812832-48812851 | Msa1022530:CDS | 40.0% | |
| TCTAGCCCAATGTTTGTAGT+TGG | + | chr7_1:48813098-48813117 | None:intergenic | 40.0% | |
| ! | ATTGGGCTAGATAGAGTTGA+AGG | - | chr7_1:48813107-48813126 | Msa1022530:CDS | 40.0% |
| CAACAAACACCAAAAGATGG+TGG | - | chr7_1:48813562-48813581 | Msa1022530:intron | 40.0% | |
| GGAAATGGTCAATGTCTAAC+AGG | - | chr7_1:48813682-48813701 | Msa1022530:intron | 40.0% | |
| TGTCTAACAGGTGATTGCTT+TGG | - | chr7_1:48813694-48813713 | Msa1022530:intron | 40.0% | |
| AAACTACAATGTGCAGGACT+AGG | - | chr7_1:48813718-48813737 | Msa1022530:intron | 40.0% | |
| ACAGTTGTGGAAATGACACT+AGG | - | chr7_1:48813757-48813776 | Msa1022530:intron | 40.0% | |
| TCAATGAAACCTATTGGTGG+TGG | - | chr7_1:48813844-48813863 | Msa1022530:intron | 40.0% | |
| !! | AAACCTATTGGTGGTGGAAT+TGG | - | chr7_1:48813850-48813869 | Msa1022530:intron | 40.0% |
| !! | TCTTCACTTCAAGTGCTGAT+GGG | + | chr7_1:48813918-48813937 | None:intergenic | 40.0% |
| GCACTTGAAGTGAAGAGAAA+TGG | - | chr7_1:48813922-48813941 | Msa1022530:intron | 40.0% | |
| AGTGAAGAGAAATGGGAAAG+TGG | - | chr7_1:48813930-48813949 | Msa1022530:intron | 40.0% | |
| AAGAGAAATGGGAAAGTGGT+TGG | - | chr7_1:48813934-48813953 | Msa1022530:intron | 40.0% | |
| ! | TAGGGCAAATAGCCTTAAAG+AGG | + | chr7_1:48814056-48814075 | None:intergenic | 40.0% |
| !! | CTTTAAGGCTATTTGCCCTA+AGG | - | chr7_1:48814056-48814075 | Msa1022530:intron | 40.0% |
| CTTCAACTTCAATTCGGCAT+CGG | + | chr7_1:48814179-48814198 | None:intergenic | 40.0% | |
| TAAGGTGAATTCTAGCCACT+AGG | + | chr7_1:48814254-48814273 | None:intergenic | 40.0% | |
| GGGGACTTATTCACCTTATA+AGG | + | chr7_1:48814272-48814291 | None:intergenic | 40.0% | |
| GATAAGGTAGTAGAGAAGTG+TGG | + | chr7_1:48812555-48812574 | None:intergenic | 40.0% | |
| TCACATGTAAACGTGCAGTT+CGG | - | chr7_1:48812777-48812796 | Msa1022530:three_prime_UTR | 40.0% | |
| AGCCAGCAACTAAGAATCTT+AGG | - | chr7_1:48812832-48812851 | Msa1022530:CDS | 40.0% | |
| TCTAGCCCAATGTTTGTAGT+TGG | + | chr7_1:48813098-48813117 | None:intergenic | 40.0% | |
| ! | ATTGGGCTAGATAGAGTTGA+AGG | - | chr7_1:48813107-48813126 | Msa1022530:CDS | 40.0% |
| CAACAAACACCAAAAGATGG+TGG | - | chr7_1:48813562-48813581 | Msa1022530:intron | 40.0% | |
| GGAAATGGTCAATGTCTAAC+AGG | - | chr7_1:48813682-48813701 | Msa1022530:intron | 40.0% | |
| TGTCTAACAGGTGATTGCTT+TGG | - | chr7_1:48813694-48813713 | Msa1022530:intron | 40.0% | |
| AAACTACAATGTGCAGGACT+AGG | - | chr7_1:48813718-48813737 | Msa1022530:intron | 40.0% | |
| ACAGTTGTGGAAATGACACT+AGG | - | chr7_1:48813757-48813776 | Msa1022530:intron | 40.0% | |
| TCAATGAAACCTATTGGTGG+TGG | - | chr7_1:48813844-48813863 | Msa1022530:intron | 40.0% | |
| !! | AAACCTATTGGTGGTGGAAT+TGG | - | chr7_1:48813850-48813869 | Msa1022530:intron | 40.0% |
| !! | TCTTCACTTCAAGTGCTGAT+GGG | + | chr7_1:48813918-48813937 | None:intergenic | 40.0% |
| GCACTTGAAGTGAAGAGAAA+TGG | - | chr7_1:48813922-48813941 | Msa1022530:intron | 40.0% | |
| AGTGAAGAGAAATGGGAAAG+TGG | - | chr7_1:48813930-48813949 | Msa1022530:intron | 40.0% | |
| AAGAGAAATGGGAAAGTGGT+TGG | - | chr7_1:48813934-48813953 | Msa1022530:intron | 40.0% | |
| ! | TAGGGCAAATAGCCTTAAAG+AGG | + | chr7_1:48814056-48814075 | None:intergenic | 40.0% |
| !! | CTTTAAGGCTATTTGCCCTA+AGG | - | chr7_1:48814056-48814075 | Msa1022530:intron | 40.0% |
| CTTCAACTTCAATTCGGCAT+CGG | + | chr7_1:48814179-48814198 | None:intergenic | 40.0% | |
| TAAGGTGAATTCTAGCCACT+AGG | + | chr7_1:48814254-48814273 | None:intergenic | 40.0% | |
| GGGGACTTATTCACCTTATA+AGG | + | chr7_1:48814272-48814291 | None:intergenic | 40.0% | |
| TGTAAACGTGCAGTTCGGTT+CGG | - | chr7_1:48812782-48812801 | Msa1022530:three_prime_UTR | 45.0% | |
| ! | GTTCGGTCTAGCTCAATGTT+AGG | - | chr7_1:48812799-48812818 | Msa1022530:three_prime_UTR | 45.0% |
| GGGCAACAAACACCAAAAGA+TGG | - | chr7_1:48813559-48813578 | Msa1022530:intron | 45.0% | |
| ! | GGTGGATTTCATCTAGGTAG+CGG | - | chr7_1:48813580-48813599 | Msa1022530:intron | 45.0% |
| GGAAGAATTTGGGGAAGACA+AGG | - | chr7_1:48813640-48813659 | Msa1022530:intron | 45.0% | |
| ACATTCGACAACGACGGAAA+TGG | - | chr7_1:48813667-48813686 | Msa1022530:intron | 45.0% | |
| ATTTCCACAACTGTTGCTGG+TGG | + | chr7_1:48813751-48813770 | None:intergenic | 45.0% | |
| GTCATTTCCACAACTGTTGC+TGG | + | chr7_1:48813754-48813773 | None:intergenic | 45.0% | |
| CAACCAATTCCACCACCAAT+AGG | + | chr7_1:48813856-48813875 | None:intergenic | 45.0% | |
| !! | ATTGGTGGTGGAATTGGTTG+TGG | - | chr7_1:48813856-48813875 | Msa1022530:intron | 45.0% |
| !! | CTCTTCACTTCAAGTGCTGA+TGG | + | chr7_1:48813919-48813938 | None:intergenic | 45.0% |
| TTAATAGATGCAGGGCTCCA+AGG | - | chr7_1:48814112-48814131 | Msa1022530:intron | 45.0% | |
| ! | TCAATTCGGCATCGGAATTC+CGG | + | chr7_1:48814171-48814190 | None:intergenic | 45.0% |
| !! | TTTTTGGTCAGGTAGCCTAG+TGG | - | chr7_1:48814236-48814255 | Msa1022530:intron | 45.0% |
| TACCAACTGAGCTATGCTCA+CGG | - | chr7_1:48814339-48814358 | Msa1022530:intron | 45.0% | |
| TGTAAACGTGCAGTTCGGTT+CGG | - | chr7_1:48812782-48812801 | Msa1022530:three_prime_UTR | 45.0% | |
| ! | GTTCGGTCTAGCTCAATGTT+AGG | - | chr7_1:48812799-48812818 | Msa1022530:three_prime_UTR | 45.0% |
| GGGCAACAAACACCAAAAGA+TGG | - | chr7_1:48813559-48813578 | Msa1022530:intron | 45.0% | |
| ! | GGTGGATTTCATCTAGGTAG+CGG | - | chr7_1:48813580-48813599 | Msa1022530:intron | 45.0% |
| GGAAGAATTTGGGGAAGACA+AGG | - | chr7_1:48813640-48813659 | Msa1022530:intron | 45.0% | |
| ACATTCGACAACGACGGAAA+TGG | - | chr7_1:48813667-48813686 | Msa1022530:intron | 45.0% | |
| ATTTCCACAACTGTTGCTGG+TGG | + | chr7_1:48813751-48813770 | None:intergenic | 45.0% | |
| GTCATTTCCACAACTGTTGC+TGG | + | chr7_1:48813754-48813773 | None:intergenic | 45.0% | |
| CAACCAATTCCACCACCAAT+AGG | + | chr7_1:48813856-48813875 | None:intergenic | 45.0% | |
| !! | ATTGGTGGTGGAATTGGTTG+TGG | - | chr7_1:48813856-48813875 | Msa1022530:intron | 45.0% |
| !! | CTCTTCACTTCAAGTGCTGA+TGG | + | chr7_1:48813919-48813938 | None:intergenic | 45.0% |
| TTAATAGATGCAGGGCTCCA+AGG | - | chr7_1:48814112-48814131 | Msa1022530:intron | 45.0% | |
| ! | TCAATTCGGCATCGGAATTC+CGG | + | chr7_1:48814171-48814190 | None:intergenic | 45.0% |
| !! | TTTTTGGTCAGGTAGCCTAG+TGG | - | chr7_1:48814236-48814255 | Msa1022530:intron | 45.0% |
| TACCAACTGAGCTATGCTCA+CGG | - | chr7_1:48814339-48814358 | Msa1022530:intron | 45.0% | |
| ! | TGTGGAGAAAGTGTATGGCC+AGG | - | chr7_1:48813520-48813539 | Msa1022530:intron | 50.0% |
| ! | GTGGAGAAAGTGTATGGCCA+GGG | - | chr7_1:48813521-48813540 | Msa1022530:intron | 50.0% |
| AGTGTATGGCCAGGGATACT+AGG | - | chr7_1:48813529-48813548 | Msa1022530:intron | 50.0% | |
| CAGGGATACTAGGAGGATCA+GGG | - | chr7_1:48813539-48813558 | Msa1022530:intron | 50.0% | |
| GGTTGCACATTCGACAACGA+CGG | - | chr7_1:48813661-48813680 | Msa1022530:intron | 50.0% | |
| CTACAATGTGCAGGACTAGG+AGG | - | chr7_1:48813721-48813740 | Msa1022530:intron | 50.0% | |
| AGTTCCACCAGCAACAGTTG+TGG | - | chr7_1:48813744-48813763 | Msa1022530:intron | 50.0% | |
| CATCGGAATTCCGGTTACTG+CGG | + | chr7_1:48814162-48814181 | None:intergenic | 50.0% | |
| AGGTGAATAAGTCCCCTGTC+CGG | - | chr7_1:48814276-48814295 | Msa1022530:intron | 50.0% | |
| ATTGTTATATGCAGGGGCCG+GGG | + | chr7_1:48814310-48814329 | None:intergenic | 50.0% | |
| CATTGTTATATGCAGGGGCC+GGG | + | chr7_1:48814311-48814330 | None:intergenic | 50.0% | |
| GCATTGTTATATGCAGGGGC+CGG | + | chr7_1:48814312-48814331 | None:intergenic | 50.0% | |
| GTGAGCATAGCTCAGTTGGT+AGG | + | chr7_1:48814340-48814359 | None:intergenic | 50.0% | |
| ACCAACTGAGCTATGCTCAC+GGG | - | chr7_1:48814340-48814359 | Msa1022530:intron | 50.0% | |
| ! | TGTGGAGAAAGTGTATGGCC+AGG | - | chr7_1:48813520-48813539 | Msa1022530:intron | 50.0% |
| ! | GTGGAGAAAGTGTATGGCCA+GGG | - | chr7_1:48813521-48813540 | Msa1022530:intron | 50.0% |
| AGTGTATGGCCAGGGATACT+AGG | - | chr7_1:48813529-48813548 | Msa1022530:intron | 50.0% | |
| CAGGGATACTAGGAGGATCA+GGG | - | chr7_1:48813539-48813558 | Msa1022530:intron | 50.0% | |
| GGTTGCACATTCGACAACGA+CGG | - | chr7_1:48813661-48813680 | Msa1022530:intron | 50.0% | |
| CTACAATGTGCAGGACTAGG+AGG | - | chr7_1:48813721-48813740 | Msa1022530:intron | 50.0% | |
| AGTTCCACCAGCAACAGTTG+TGG | - | chr7_1:48813744-48813763 | Msa1022530:intron | 50.0% | |
| CATCGGAATTCCGGTTACTG+CGG | + | chr7_1:48814162-48814181 | None:intergenic | 50.0% | |
| AGGTGAATAAGTCCCCTGTC+CGG | - | chr7_1:48814276-48814295 | Msa1022530:intron | 50.0% | |
| ATTGTTATATGCAGGGGCCG+GGG | + | chr7_1:48814310-48814329 | None:intergenic | 50.0% | |
| CATTGTTATATGCAGGGGCC+GGG | + | chr7_1:48814311-48814330 | None:intergenic | 50.0% | |
| GCATTGTTATATGCAGGGGC+CGG | + | chr7_1:48814312-48814331 | None:intergenic | 50.0% | |
| GTGAGCATAGCTCAGTTGGT+AGG | + | chr7_1:48814340-48814359 | None:intergenic | 50.0% | |
| ACCAACTGAGCTATGCTCAC+GGG | - | chr7_1:48814340-48814359 | Msa1022530:intron | 50.0% | |
| GTATGGCCAGGGATACTAGG+AGG | - | chr7_1:48813532-48813551 | Msa1022530:intron | 55.0% | |
| CCTGATCCTCCTAGTATCCC+TGG | + | chr7_1:48813541-48813560 | None:intergenic | 55.0% | |
| CCAGGGATACTAGGAGGATC+AGG | - | chr7_1:48813538-48813557 | Msa1022530:intron | 55.0% | |
| GGTGAATAAGTCCCCTGTCC+GGG | - | chr7_1:48814277-48814296 | Msa1022530:intron | 55.0% | |
| GTGAATAAGTCCCCTGTCCG+GGG | - | chr7_1:48814278-48814297 | Msa1022530:intron | 55.0% | |
| TCCCGTGAGCATAGCTCAGT+TGG | + | chr7_1:48814344-48814363 | None:intergenic | 55.0% | |
| GTATGGCCAGGGATACTAGG+AGG | - | chr7_1:48813532-48813551 | Msa1022530:intron | 55.0% | |
| CCTGATCCTCCTAGTATCCC+TGG | + | chr7_1:48813541-48813560 | None:intergenic | 55.0% | |
| CCAGGGATACTAGGAGGATC+AGG | - | chr7_1:48813538-48813557 | Msa1022530:intron | 55.0% | |
| GGTGAATAAGTCCCCTGTCC+GGG | - | chr7_1:48814277-48814296 | Msa1022530:intron | 55.0% | |
| GTGAATAAGTCCCCTGTCCG+GGG | - | chr7_1:48814278-48814297 | Msa1022530:intron | 55.0% | |
| TCCCGTGAGCATAGCTCAGT+TGG | + | chr7_1:48814344-48814363 | None:intergenic | 55.0% | |
| AATTCCGGTTACTGCGGCGG+AGG | + | chr7_1:48814156-48814175 | None:intergenic | 60.0% | |
| CGGAATTCCGGTTACTGCGG+CGG | + | chr7_1:48814159-48814178 | None:intergenic | 60.0% | |
| AATTCCGGTTACTGCGGCGG+AGG | + | chr7_1:48814156-48814175 | None:intergenic | 60.0% | |
| CGGAATTCCGGTTACTGCGG+CGG | + | chr7_1:48814159-48814178 | None:intergenic | 60.0% | |
| CTGTCCTCCGCCGCAGTAAC+CGG | - | chr7_1:48814149-48814168 | Msa1022530:intron | 65.0% | |
| CTGTCCTCCGCCGCAGTAAC+CGG | - | chr7_1:48814149-48814168 | Msa1022530:intron | 65.0% | |
| GGGGTTCGAACCCCGGACAG+GGG | + | chr7_1:48814291-48814310 | None:intergenic | 70.0% | |
| CGGGGTTCGAACCCCGGACA+GGG | + | chr7_1:48814292-48814311 | None:intergenic | 70.0% | |
| CCTGTCCGGGGTTCGAACCC+CGG | - | chr7_1:48814290-48814309 | Msa1022530:intron | 70.0% | |
| GGGGTTCGAACCCCGGACAG+GGG | + | chr7_1:48814291-48814310 | None:intergenic | 70.0% | |
| CGGGGTTCGAACCCCGGACA+GGG | + | chr7_1:48814292-48814311 | None:intergenic | 70.0% | |
| CCTGTCCGGGGTTCGAACCC+CGG | - | chr7_1:48814290-48814309 | Msa1022530:intron | 70.0% | |
| CCGGGGTTCGAACCCCGGAC+AGG | + | chr7_1:48814293-48814312 | None:intergenic | 75.0% | |
| AGGGGCCGGGGTTCGAACCC+CGG | + | chr7_1:48814298-48814317 | None:intergenic | 75.0% | |
| CCGGGGTTCGAACCCCGGAC+AGG | + | chr7_1:48814293-48814312 | None:intergenic | 75.0% | |
| AGGGGCCGGGGTTCGAACCC+CGG | + | chr7_1:48814298-48814317 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 48812521 | 48814468 | 48812521 | ID=Msa1022530;Name=Msa1022530 |
| chr7_1 | mRNA | 48812521 | 48814468 | 48812521 | ID=Msa1022530-mRNA-1;Parent=Msa1022530;Name=Msa1022530-mRNA-1;_AED=0.09;_eAED=0.09;_QI=18|1|1|1|0.5|0.33|3|154|245 |
| chr7_1 | exon | 48812521 | 48812600 | 48812521 | ID=Msa1022530-mRNA-1:exon:9598;Parent=Msa1022530-mRNA-1 |
| chr7_1 | exon | 48812748 | 48813498 | 48812748 | ID=Msa1022530-mRNA-1:exon:9597;Parent=Msa1022530-mRNA-1 |
| chr7_1 | exon | 48814390 | 48814468 | 48814390 | ID=Msa1022530-mRNA-1:exon:9596;Parent=Msa1022530-mRNA-1 |
| chr7_1 | five_prime_UTR | 48814451 | 48814468 | 48814451 | ID=Msa1022530-mRNA-1:five_prime_utr;Parent=Msa1022530-mRNA-1 |
| chr7_1 | CDS | 48814390 | 48814450 | 48814390 | ID=Msa1022530-mRNA-1:cds;Parent=Msa1022530-mRNA-1 |
| chr7_1 | CDS | 48812822 | 48813498 | 48812822 | ID=Msa1022530-mRNA-1:cds;Parent=Msa1022530-mRNA-1 |
| chr7_1 | three_prime_UTR | 48812748 | 48812821 | 48812748 | ID=Msa1022530-mRNA-1:three_prime_utr;Parent=Msa1022530-mRNA-1 |
| chr7_1 | three_prime_UTR | 48812521 | 48812600 | 48812521 | ID=Msa1022530-mRNA-1:three_prime_utr;Parent=Msa1022530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
