Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095310 | BAT84153.1 | 96.933 | 163 | 5 | 0 | 34 | 196 | 10 | 172 | 2.52e-108 | 318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095310 | sp|Q9BBS3|ATPA_LOTJA | 92.486 | 173 | 13 | 0 | 24 | 196 | 313 | 485 | 6.36e-108 | 321 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095310 | A0A0S3RU90 | 96.933 | 163 | 5 | 0 | 34 | 196 | 10 | 172 | 1.20e-108 | 318 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095190 | Msa0095310 | 0.805487 | 1.303375e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095310 | MtrunA17_Chr4g0015651 | 91.908 | 173 | 14 | 0 | 24 | 196 | 313 | 485 | 1.75e-107 | 317 |
| Msa0095310 | MtrunA17_Chr4g0016741 | 91.908 | 173 | 14 | 0 | 24 | 196 | 313 | 485 | 1.75e-107 | 317 |
| Msa0095310 | MtrunA17_CPg0492941 | 91.908 | 173 | 14 | 0 | 24 | 196 | 313 | 485 | 1.75e-107 | 317 |
| Msa0095310 | MtrunA17_Chr2g0278821 | 88.095 | 168 | 20 | 0 | 24 | 191 | 94 | 261 | 4.30e-102 | 296 |
| Msa0095310 | MtrunA17_MTg0490471 | 61.212 | 165 | 59 | 2 | 34 | 198 | 333 | 492 | 1.51e-58 | 191 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095310 | ATCG00120.1 | 85.876 | 177 | 25 | 0 | 24 | 200 | 313 | 489 | 3.74e-103 | 306 |
| Msa0095310 | ATMG01190.1 | 57.229 | 166 | 68 | 1 | 34 | 199 | 333 | 495 | 4.58e-55 | 182 |
| Msa0095310 | AT2G07698.1 | 57.229 | 166 | 68 | 1 | 34 | 199 | 603 | 765 | 2.56e-53 | 182 |
Find 43 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATATGATTTCGTTAAATTT+AGG | 0.221398 | 1_2:+79102610 | None:intergenic |
| GGTAGCTGGTAAATTAAAAT+TGG | 0.278592 | 1_2:-79102884 | Msa0095310:CDS |
| TAAATTTCTCGTTGAGTTAA+GGG | 0.286893 | 1_2:-79102653 | Msa0095310:CDS |
| TTTACCAGCTACCTGTTTCA+TGG | 0.322039 | 1_2:+79102894 | None:intergenic |
| GTAAATTTCTCGTTGAGTTA+AGG | 0.332779 | 1_2:-79102654 | Msa0095310:CDS |
| TGGTAAATTAAAATTGGAAT+TGG | 0.382867 | 1_2:-79102878 | Msa0095310:CDS |
| CACAGTGAGAGGAGCTGATT+GGG | 0.383779 | 1_2:+79102747 | None:intergenic |
| CCTGAATAGCTTCCTTCAAA+AGG | 0.405866 | 1_2:+79102555 | None:intergenic |
| TCAAATTAAAGCCATGAAAC+AGG | 0.408465 | 1_2:-79102905 | Msa0095310:CDS |
| AGGTGGACCCTTCGTCTTCA+TGG | 0.414358 | 1_2:+79103874 | None:intergenic |
| CAGATAATAACTATTTATAC+TGG | 0.421148 | 1_2:-79102718 | Msa0095310:CDS |
| TAGTCAAGCTACTTGTTCAT+TGG | 0.428542 | 1_2:-79103804 | Msa0095310:intron |
| TCTTCTACCAAGACATTCAC+TGG | 0.432209 | 1_2:-79102589 | Msa0095310:CDS |
| AAATATTTGGCCATCTGTAA+TGG | 0.434228 | 1_2:+79103008 | None:intergenic |
| CCACAGTGAGAGGAGCTGAT+TGG | 0.438205 | 1_2:+79102746 | None:intergenic |
| GGTATTTCCGTTTCCAGAGT+TGG | 0.443512 | 1_2:-79102937 | Msa0095310:CDS |
| GTAATGGAAATTACATTAGT+AGG | 0.444650 | 1_2:+79103024 | None:intergenic |
| TAAAGCTACGCAAAATCAAT+TGG | 0.449089 | 1_2:-79102806 | Msa0095310:CDS |
| CAATAGTTGGGAGACCAATC+AGG | 0.453612 | 1_2:-79103066 | Msa0095310:intron |
| TGATTCATTAGAAATTGATC+AGG | 0.481395 | 1_2:-79102680 | Msa0095310:CDS |
| AAGCTGAAACATCTCCTGAT+TGG | 0.485130 | 1_2:+79103052 | None:intergenic |
| CGCCGATCCAACTCTGGAAA+CGG | 0.485937 | 1_2:+79102930 | None:intergenic |
| CTGAATAGCTTCCTTCAAAA+GGG | 0.494622 | 1_2:+79102556 | None:intergenic |
| TTCCGTTTCCAGAGTTGGAT+CGG | 0.499691 | 1_2:-79102932 | Msa0095310:CDS |
| CTGCTTCCCAGTGAATGTCT+TGG | 0.500782 | 1_2:+79102582 | None:intergenic |
| TCTGCCGATCTATTCAATGC+TGG | 0.509351 | 1_2:-79102982 | Msa0095310:CDS |
| TTGAGCCGCCGATCCAACTC+TGG | 0.524235 | 1_2:+79102924 | None:intergenic |
| GAAATACCCACATTAATAGC+TGG | 0.538501 | 1_2:+79102952 | None:intergenic |
| ACTATTTATACTGGAACGAA+TGG | 0.546292 | 1_2:-79102709 | Msa0095310:CDS |
| ATCTGTTCTTCCACAGTGAG+AGG | 0.551959 | 1_2:+79102736 | None:intergenic |
| AATGTAATTTCCATTACAGA+TGG | 0.557336 | 1_2:-79103018 | Msa0095310:CDS |
| AAAGCCATGAAACAGGTAGC+TGG | 0.558354 | 1_2:-79102898 | Msa0095310:CDS |
| ATCAGACCAGCTATTAATGT+GGG | 0.604091 | 1_2:-79102958 | Msa0095310:CDS |
| CTTCTACCAAGACATTCACT+GGG | 0.616685 | 1_2:-79102588 | Msa0095310:CDS |
| AATCAGACCAGCTATTAATG+TGG | 0.625394 | 1_2:-79102959 | Msa0095310:CDS |
| GATTCCAGCATTGAATAGAT+CGG | 0.626418 | 1_2:+79102978 | None:intergenic |
| ACGCAAAATCAATTGGCAAG+AGG | 0.645378 | 1_2:-79102799 | Msa0095310:CDS |
| ATGGAAGACGAAAGGTCACA+AGG | 0.648925 | 1_2:+79103854 | None:intergenic |
| TTATCATCCATGAAGACGAA+GGG | 0.649233 | 1_2:-79103881 | None:intergenic |
| GTTATCATCCATGAAGACGA+AGG | 0.657173 | 1_2:-79103882 | None:intergenic |
| CGTTTCCAGAGTTGGATCGG+CGG | 0.663289 | 1_2:-79102929 | Msa0095310:CDS |
| CCAATCAGCTCCTCTCACTG+TGG | 0.687803 | 1_2:-79102746 | Msa0095310:CDS |
| GAAGACGAAAGGTCACAAGG+TGG | 0.755331 | 1_2:+79103857 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAAACATTATTTTAGTC+AGG | + | chr1_2:79102982-79103001 | None:intergenic | 15.0% |
| !!! | ATTTAAACATTATTTTAGTC+AGG | + | chr1_2:79102982-79103001 | None:intergenic | 15.0% |
| !!! | ATTCAAACATTATTTTAGTC+AGG | + | chr1_2:79102680-79102699 | None:intergenic | 20.0% |
| !!! | ATTCAAACATTATTTTAGTC+AGG | + | chr1_2:79102680-79102699 | None:intergenic | 20.0% |
| !!! | GATTTAAACATTTTTTAGTC+AGG | + | chr1_2:79103136-79103155 | None:intergenic | 20.0% |
| !!! | NNNNNNNNNTTCTCGTCTTT+TGG | - | chr1_2:79103299-79103318 | Msa0095310:intron | 20.0% |
| !! | TGGTAAATTAAAATTGGAAT+TGG | - | chr1_2:79103564-79103583 | Msa0095310:intron | 20.0% |
| !! | CAGATAATAACTATTTATAC+TGG | - | chr1_2:79103724-79103743 | Msa0095310:intron | 20.0% |
| !! | GATATGATTTCGTTAAATTT+AGG | + | chr1_2:79103835-79103854 | None:intergenic | 20.0% |
| !!! | ATTCAAACATTATTTTAGTC+AGG | + | chr1_2:79102680-79102699 | None:intergenic | 20.0% |
| !!! | ATTCAAACATTATTTTAGTC+AGG | + | chr1_2:79102680-79102699 | None:intergenic | 20.0% |
| !!! | GATTTAAACATTTTTTAGTC+AGG | + | chr1_2:79103136-79103155 | None:intergenic | 20.0% |
| !!! | NNNNNNNNNTTCTCGTCTTT+TGG | - | chr1_2:79103299-79103318 | Msa0095310:intron | 20.0% |
| !! | TGGTAAATTAAAATTGGAAT+TGG | - | chr1_2:79103564-79103583 | Msa0095310:intron | 20.0% |
| !! | CAGATAATAACTATTTATAC+TGG | - | chr1_2:79103724-79103743 | Msa0095310:intron | 20.0% |
| !! | GATATGATTTCGTTAAATTT+AGG | + | chr1_2:79103835-79103854 | None:intergenic | 20.0% |
| !!! | TTTAAAGAGAGTTTTGATCA+TGG | + | chr1_2:79102610-79102629 | None:intergenic | 25.0% |
| !!! | TTTAAAGAGAGTTTTGATCA+TGG | + | chr1_2:79102610-79102629 | None:intergenic | 25.0% |
| ! | NNNNNNNNNNGGAAGACGAA+AGG | + | chr1_2:79103198-79103217 | None:intergenic | 25.0% |
| ! | TAACTGAGAACTTAATTTAG+CGG | + | chr1_2:79103331-79103350 | None:intergenic | 25.0% |
| !! | GTAATGGAAATTACATTAGT+AGG | + | chr1_2:79103421-79103440 | None:intergenic | 25.0% |
| ! | AATGTAATTTCCATTACAGA+TGG | - | chr1_2:79103424-79103443 | Msa0095310:intron | 25.0% |
| ! | TGATTCATTAGAAATTGATC+AGG | - | chr1_2:79103762-79103781 | Msa0095310:intron | 25.0% |
| ! | TAAATTTCTCGTTGAGTTAA+GGG | - | chr1_2:79103789-79103808 | Msa0095310:intron | 25.0% |
| !!! | TTTAAAGAGAGTTTTGATCA+TGG | + | chr1_2:79102610-79102629 | None:intergenic | 25.0% |
| !!! | TTTAAAGAGAGTTTTGATCA+TGG | + | chr1_2:79102610-79102629 | None:intergenic | 25.0% |
| ! | NNNNNNNNNNGGAAGACGAA+AGG | + | chr1_2:79103198-79103217 | None:intergenic | 25.0% |
| ! | TAACTGAGAACTTAATTTAG+CGG | + | chr1_2:79103331-79103350 | None:intergenic | 25.0% |
| !! | GTAATGGAAATTACATTAGT+AGG | + | chr1_2:79103421-79103440 | None:intergenic | 25.0% |
| ! | AATGTAATTTCCATTACAGA+TGG | - | chr1_2:79103424-79103443 | Msa0095310:intron | 25.0% |
| ! | TGATTCATTAGAAATTGATC+AGG | - | chr1_2:79103762-79103781 | Msa0095310:intron | 25.0% |
| ! | TAAATTTCTCGTTGAGTTAA+GGG | - | chr1_2:79103789-79103808 | Msa0095310:intron | 25.0% |
| !! | TGTAAAGAGAGTTTTGATCA+TGG | + | chr1_2:79102754-79102773 | None:intergenic | 30.0% |
| !! | TAAATTAGAGTTTTGATCCC+TGG | + | chr1_2:79102900-79102919 | None:intergenic | 30.0% |
| TTAGTCAGTTACTTGTTCAT+TGG | - | chr1_2:79102929-79102948 | Msa0095310:CDS | 30.0% | |
| TTTAAATCGAGTTATCATCC+TGG | - | chr1_2:79102995-79103014 | Msa0095310:CDS | 30.0% | |
| TTAGTCAGTTACTTGTTCAT+TGG | - | chr1_2:79102929-79102948 | Msa0095310:CDS | 30.0% | |
| TTTAAATCGAGTTATCATCC+TGG | - | chr1_2:79102995-79103014 | Msa0095310:CDS | 30.0% | |
| GCTAAATTAAGTTCTCAGTT+AGG | - | chr1_2:79103330-79103349 | Msa0095310:intron | 30.0% | |
| ATGAATGCTTTACCAATAGT+TGG | - | chr1_2:79103363-79103382 | Msa0095310:intron | 30.0% | |
| TGAATGCTTTACCAATAGTT+GGG | - | chr1_2:79103364-79103383 | Msa0095310:intron | 30.0% | |
| AAATATTTGGCCATCTGTAA+TGG | + | chr1_2:79103437-79103456 | None:intergenic | 30.0% | |
| GATCGGCAGATAAAAATATT+TGG | + | chr1_2:79103450-79103469 | None:intergenic | 30.0% | |
| TCAAATTAAAGCCATGAAAC+AGG | - | chr1_2:79103537-79103556 | Msa0095310:intron | 30.0% | |
| GGTAGCTGGTAAATTAAAAT+TGG | - | chr1_2:79103558-79103577 | Msa0095310:intron | 30.0% | |
| TAAAGCTACGCAAAATCAAT+TGG | - | chr1_2:79103636-79103655 | Msa0095310:intron | 30.0% | |
| ACTATTTATACTGGAACGAA+TGG | - | chr1_2:79103733-79103752 | Msa0095310:intron | 30.0% | |
| GTAAATTTCTCGTTGAGTTA+AGG | - | chr1_2:79103788-79103807 | Msa0095310:intron | 30.0% | |
| !! | TGTAAAGAGAGTTTTGATCA+TGG | + | chr1_2:79102754-79102773 | None:intergenic | 30.0% |
| !! | TAAATTAGAGTTTTGATCCC+TGG | + | chr1_2:79102900-79102919 | None:intergenic | 30.0% |
| TTAGTCAGTTACTTGTTCAT+TGG | - | chr1_2:79102929-79102948 | Msa0095310:CDS | 30.0% | |
| TTTAAATCGAGTTATCATCC+TGG | - | chr1_2:79102995-79103014 | Msa0095310:CDS | 30.0% | |
| TTAGTCAGTTACTTGTTCAT+TGG | - | chr1_2:79102929-79102948 | Msa0095310:CDS | 30.0% | |
| TTTAAATCGAGTTATCATCC+TGG | - | chr1_2:79102995-79103014 | Msa0095310:CDS | 30.0% | |
| GCTAAATTAAGTTCTCAGTT+AGG | - | chr1_2:79103330-79103349 | Msa0095310:intron | 30.0% | |
| ATGAATGCTTTACCAATAGT+TGG | - | chr1_2:79103363-79103382 | Msa0095310:intron | 30.0% | |
| TGAATGCTTTACCAATAGTT+GGG | - | chr1_2:79103364-79103383 | Msa0095310:intron | 30.0% | |
| AAATATTTGGCCATCTGTAA+TGG | + | chr1_2:79103437-79103456 | None:intergenic | 30.0% | |
| GATCGGCAGATAAAAATATT+TGG | + | chr1_2:79103450-79103469 | None:intergenic | 30.0% | |
| TCAAATTAAAGCCATGAAAC+AGG | - | chr1_2:79103537-79103556 | Msa0095310:intron | 30.0% | |
| GGTAGCTGGTAAATTAAAAT+TGG | - | chr1_2:79103558-79103577 | Msa0095310:intron | 30.0% | |
| TAAAGCTACGCAAAATCAAT+TGG | - | chr1_2:79103636-79103655 | Msa0095310:intron | 30.0% | |
| ACTATTTATACTGGAACGAA+TGG | - | chr1_2:79103733-79103752 | Msa0095310:intron | 30.0% | |
| GTAAATTTCTCGTTGAGTTA+AGG | - | chr1_2:79103788-79103807 | Msa0095310:intron | 30.0% | |
| ! | TTTTGATCATGGAAGACGAA+AGG | + | chr1_2:79102599-79102618 | None:intergenic | 35.0% |
| TAGTCAAGCTACTTGTTCAT+TGG | - | chr1_2:79102638-79102657 | Msa0095310:CDS | 35.0% | |
| TTTGAATCGAGTTATCATCC+TGG | - | chr1_2:79102693-79102712 | Msa0095310:CDS | 35.0% | |
| ! | TTTTGATCATGGAAGACGAA+AGG | + | chr1_2:79102599-79102618 | None:intergenic | 35.0% |
| ATAACCAACGAACAAGTAAC+TGG | + | chr1_2:79102790-79102809 | None:intergenic | 35.0% | |
| TTTGAATCGAGTTATCATCC+TGG | - | chr1_2:79102693-79102712 | Msa0095310:CDS | 35.0% | |
| TTAAGTTCTCAGTTAGGTGA+AGG | - | chr1_2:79103336-79103355 | Msa0095310:intron | 35.0% | |
| ! | GATTCCAGCATTGAATAGAT+CGG | + | chr1_2:79103467-79103486 | None:intergenic | 35.0% |
| AATCAGACCAGCTATTAATG+TGG | - | chr1_2:79103483-79103502 | Msa0095310:intron | 35.0% | |
| ATCAGACCAGCTATTAATGT+GGG | - | chr1_2:79103484-79103503 | Msa0095310:intron | 35.0% | |
| GAAATACCCACATTAATAGC+TGG | + | chr1_2:79103493-79103512 | None:intergenic | 35.0% | |
| ! | TTTTGATCATGGAAGACGAA+AGG | + | chr1_2:79102599-79102618 | None:intergenic | 35.0% |
| TAGTCAAGCTACTTGTTCAT+TGG | - | chr1_2:79102638-79102657 | Msa0095310:CDS | 35.0% | |
| TTTGAATCGAGTTATCATCC+TGG | - | chr1_2:79102693-79102712 | Msa0095310:CDS | 35.0% | |
| ! | TTTTGATCATGGAAGACGAA+AGG | + | chr1_2:79102599-79102618 | None:intergenic | 35.0% |
| ATAACCAACGAACAAGTAAC+TGG | + | chr1_2:79102790-79102809 | None:intergenic | 35.0% | |
| TTTGAATCGAGTTATCATCC+TGG | - | chr1_2:79102693-79102712 | Msa0095310:CDS | 35.0% | |
| TTAAGTTCTCAGTTAGGTGA+AGG | - | chr1_2:79103336-79103355 | Msa0095310:intron | 35.0% | |
| ! | GATTCCAGCATTGAATAGAT+CGG | + | chr1_2:79103467-79103486 | None:intergenic | 35.0% |
| AATCAGACCAGCTATTAATG+TGG | - | chr1_2:79103483-79103502 | Msa0095310:intron | 35.0% | |
| ATCAGACCAGCTATTAATGT+GGG | - | chr1_2:79103484-79103503 | Msa0095310:intron | 35.0% | |
| GAAATACCCACATTAATAGC+TGG | + | chr1_2:79103493-79103512 | None:intergenic | 35.0% | |
| TTATCATCCTGGAAGACGAA+GGG | - | chr1_2:79102704-79102723 | Msa0095310:CDS | 40.0% | |
| TAGTCCAGTTACTTGTTCGT+TGG | - | chr1_2:79102783-79102802 | Msa0095310:CDS | 40.0% | |
| TTATCATCCTGGAAGACGAA+GGG | - | chr1_2:79102704-79102723 | Msa0095310:CDS | 40.0% | |
| TTATCATCCTGGAAGACGAA+GGG | - | chr1_2:79102704-79102723 | Msa0095310:CDS | 40.0% | |
| !! | GTTTTGATCATGGAAGACGA+AGG | + | chr1_2:79102600-79102619 | None:intergenic | 40.0% |
| TTATCATCCTGGAAGACGAA+GGG | - | chr1_2:79102704-79102723 | Msa0095310:CDS | 40.0% | |
| AAGCTGAAACATCTCCTGAT+TGG | + | chr1_2:79103393-79103412 | None:intergenic | 40.0% | |
| TTTACCAGCTACCTGTTTCA+TGG | + | chr1_2:79103551-79103570 | None:intergenic | 40.0% | |
| ACGCAAAATCAATTGGCAAG+AGG | - | chr1_2:79103643-79103662 | Msa0095310:intron | 40.0% | |
| TCTTCTACCAAGACATTCAC+TGG | - | chr1_2:79103853-79103872 | Msa0095310:CDS | 40.0% | |
| CTTCTACCAAGACATTCACT+GGG | - | chr1_2:79103854-79103873 | Msa0095310:CDS | 40.0% | |
| TTATCATCCTGGAAGACGAA+GGG | - | chr1_2:79102704-79102723 | Msa0095310:CDS | 40.0% | |
| TAGTCCAGTTACTTGTTCGT+TGG | - | chr1_2:79102783-79102802 | Msa0095310:CDS | 40.0% | |
| TTATCATCCTGGAAGACGAA+GGG | - | chr1_2:79102704-79102723 | Msa0095310:CDS | 40.0% | |
| TTATCATCCTGGAAGACGAA+GGG | - | chr1_2:79102704-79102723 | Msa0095310:CDS | 40.0% | |
| !! | GTTTTGATCATGGAAGACGA+AGG | + | chr1_2:79102600-79102619 | None:intergenic | 40.0% |
| TTATCATCCTGGAAGACGAA+GGG | - | chr1_2:79102704-79102723 | Msa0095310:CDS | 40.0% | |
| AAGCTGAAACATCTCCTGAT+TGG | + | chr1_2:79103393-79103412 | None:intergenic | 40.0% | |
| TTTACCAGCTACCTGTTTCA+TGG | + | chr1_2:79103551-79103570 | None:intergenic | 40.0% | |
| ACGCAAAATCAATTGGCAAG+AGG | - | chr1_2:79103643-79103662 | Msa0095310:intron | 40.0% | |
| TCTTCTACCAAGACATTCAC+TGG | - | chr1_2:79103853-79103872 | Msa0095310:CDS | 40.0% | |
| CTTCTACCAAGACATTCACT+GGG | - | chr1_2:79103854-79103873 | Msa0095310:CDS | 40.0% | |
| ATGGAAGACGAAAGGTCACA+AGG | + | chr1_2:79102591-79102610 | None:intergenic | 45.0% | |
| GTTATCATCCTGGAAGACGA+AGG | - | chr1_2:79102703-79102722 | Msa0095310:CDS | 45.0% | |
| ATGGAAGACGAAAGGTCACA+AGG | + | chr1_2:79102591-79102610 | None:intergenic | 45.0% | |
| GTTATCATCCTGGAAGACGA+AGG | - | chr1_2:79102703-79102722 | Msa0095310:CDS | 45.0% | |
| TTGTGACCTTTCGTCTTCCA+GGG | - | chr1_2:79102590-79102609 | Msa0095310:CDS | 45.0% | |
| TTTGATCCCTGGAAGACGAA+AGG | + | chr1_2:79102889-79102908 | None:intergenic | 45.0% | |
| GTTATCATCCTGGAAGACGA+AGG | - | chr1_2:79102703-79102722 | Msa0095310:CDS | 45.0% | |
| GTTATCATCCTGGAAGACGA+AGG | - | chr1_2:79102703-79102722 | Msa0095310:CDS | 45.0% | |
| !! | CTGATTGGTCTCCCAACTAT+TGG | + | chr1_2:79103378-79103397 | None:intergenic | 45.0% |
| CAATAGTTGGGAGACCAATC+AGG | - | chr1_2:79103376-79103395 | Msa0095310:intron | 45.0% | |
| TCTGCCGATCTATTCAATGC+TGG | - | chr1_2:79103460-79103479 | Msa0095310:intron | 45.0% | |
| GGTATTTCCGTTTCCAGAGT+TGG | - | chr1_2:79103505-79103524 | Msa0095310:intron | 45.0% | |
| TTCCGTTTCCAGAGTTGGAT+CGG | - | chr1_2:79103510-79103529 | Msa0095310:intron | 45.0% | |
| AAAGCCATGAAACAGGTAGC+TGG | - | chr1_2:79103544-79103563 | Msa0095310:intron | 45.0% | |
| ATCTGTTCTTCCACAGTGAG+AGG | + | chr1_2:79103709-79103728 | None:intergenic | 45.0% | |
| ATGGAAGACGAAAGGTCACA+AGG | + | chr1_2:79102591-79102610 | None:intergenic | 45.0% | |
| GTTATCATCCTGGAAGACGA+AGG | - | chr1_2:79102703-79102722 | Msa0095310:CDS | 45.0% | |
| ATGGAAGACGAAAGGTCACA+AGG | + | chr1_2:79102591-79102610 | None:intergenic | 45.0% | |
| GTTATCATCCTGGAAGACGA+AGG | - | chr1_2:79102703-79102722 | Msa0095310:CDS | 45.0% | |
| TTGTGACCTTTCGTCTTCCA+GGG | - | chr1_2:79102590-79102609 | Msa0095310:CDS | 45.0% | |
| TTTGATCCCTGGAAGACGAA+AGG | + | chr1_2:79102889-79102908 | None:intergenic | 45.0% | |
| GTTATCATCCTGGAAGACGA+AGG | - | chr1_2:79102703-79102722 | Msa0095310:CDS | 45.0% | |
| GTTATCATCCTGGAAGACGA+AGG | - | chr1_2:79102703-79102722 | Msa0095310:CDS | 45.0% | |
| !! | CTGATTGGTCTCCCAACTAT+TGG | + | chr1_2:79103378-79103397 | None:intergenic | 45.0% |
| CAATAGTTGGGAGACCAATC+AGG | - | chr1_2:79103376-79103395 | Msa0095310:intron | 45.0% | |
| TCTGCCGATCTATTCAATGC+TGG | - | chr1_2:79103460-79103479 | Msa0095310:intron | 45.0% | |
| GGTATTTCCGTTTCCAGAGT+TGG | - | chr1_2:79103505-79103524 | Msa0095310:intron | 45.0% | |
| TTCCGTTTCCAGAGTTGGAT+CGG | - | chr1_2:79103510-79103529 | Msa0095310:intron | 45.0% | |
| AAAGCCATGAAACAGGTAGC+TGG | - | chr1_2:79103544-79103563 | Msa0095310:intron | 45.0% | |
| ATCTGTTCTTCCACAGTGAG+AGG | + | chr1_2:79103709-79103728 | None:intergenic | 45.0% | |
| GAAGACGAAAGGTCACAAGG+TGG | + | chr1_2:79102588-79102607 | None:intergenic | 50.0% | |
| CTGGAAGACGAAAGGTCACA+AGG | + | chr1_2:79102881-79102900 | None:intergenic | 50.0% | |
| CTTGTGACCTTTCGTCTTCC+AGG | - | chr1_2:79102589-79102608 | Msa0095310:CDS | 50.0% | |
| CATGGAAGACGAAGGTCACA+AGG | + | chr1_2:79103038-79103057 | None:intergenic | 50.0% | |
| CACAGTGAGAGGAGCTGATT+GGG | + | chr1_2:79103698-79103717 | None:intergenic | 50.0% | |
| CTGCTTCCCAGTGAATGTCT+TGG | + | chr1_2:79103863-79103882 | None:intergenic | 50.0% | |
| GAAGACGAAAGGTCACAAGG+TGG | + | chr1_2:79102588-79102607 | None:intergenic | 50.0% | |
| CTGGAAGACGAAAGGTCACA+AGG | + | chr1_2:79102881-79102900 | None:intergenic | 50.0% | |
| CTTGTGACCTTTCGTCTTCC+AGG | - | chr1_2:79102589-79102608 | Msa0095310:CDS | 50.0% | |
| CATGGAAGACGAAGGTCACA+AGG | + | chr1_2:79103038-79103057 | None:intergenic | 50.0% | |
| CACAGTGAGAGGAGCTGATT+GGG | + | chr1_2:79103698-79103717 | None:intergenic | 50.0% | |
| CTGCTTCCCAGTGAATGTCT+TGG | + | chr1_2:79103863-79103882 | None:intergenic | 50.0% | |
| ! | CGCCGATCCAACTCTGGAAA+CGG | + | chr1_2:79103515-79103534 | None:intergenic | 55.0% |
| CGTTTCCAGAGTTGGATCGG+CGG | - | chr1_2:79103513-79103532 | Msa0095310:intron | 55.0% | |
| CCACAGTGAGAGGAGCTGAT+TGG | + | chr1_2:79103699-79103718 | None:intergenic | 55.0% | |
| CCAATCAGCTCCTCTCACTG+TGG | - | chr1_2:79103696-79103715 | Msa0095310:intron | 55.0% | |
| ! | CGCCGATCCAACTCTGGAAA+CGG | + | chr1_2:79103515-79103534 | None:intergenic | 55.0% |
| CGTTTCCAGAGTTGGATCGG+CGG | - | chr1_2:79103513-79103532 | Msa0095310:intron | 55.0% | |
| CCACAGTGAGAGGAGCTGAT+TGG | + | chr1_2:79103699-79103718 | None:intergenic | 55.0% | |
| CCAATCAGCTCCTCTCACTG+TGG | - | chr1_2:79103696-79103715 | Msa0095310:intron | 55.0% | |
| GGTGTGACCCTTCGTCTTCC+AGG | + | chr1_2:79102714-79102733 | None:intergenic | 60.0% | |
| GGTGTGACCCTTCGTCTTCC+AGG | + | chr1_2:79102714-79102733 | None:intergenic | 60.0% | |
| GTCGTGACCCTTCGTCTTCC+AGG | + | chr1_2:79103016-79103035 | None:intergenic | 60.0% | |
| GGTGTGACCCTTCGTCTTCC+AGG | + | chr1_2:79102714-79102733 | None:intergenic | 60.0% | |
| TTGAGCCGCCGATCCAACTC+TGG | + | chr1_2:79103521-79103540 | None:intergenic | 60.0% | |
| GGTGTGACCCTTCGTCTTCC+AGG | + | chr1_2:79102714-79102733 | None:intergenic | 60.0% | |
| GGTGTGACCCTTCGTCTTCC+AGG | + | chr1_2:79102714-79102733 | None:intergenic | 60.0% | |
| GTCGTGACCCTTCGTCTTCC+AGG | + | chr1_2:79103016-79103035 | None:intergenic | 60.0% | |
| GGTGTGACCCTTCGTCTTCC+AGG | + | chr1_2:79102714-79102733 | None:intergenic | 60.0% | |
| TTGAGCCGCCGATCCAACTC+TGG | + | chr1_2:79103521-79103540 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 79102570 | 79103894 | 79102570 | ID=Msa0095310;Name=Msa0095310 |
| chr1_2 | mRNA | 79102570 | 79103894 | 79102570 | ID=Msa0095310-mRNA-1;Parent=Msa0095310;Name=Msa0095310-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|0.5|1|1|2|0|200 |
| chr1_2 | exon | 79103805 | 79103894 | 79103805 | ID=Msa0095310-mRNA-1:exon:28097;Parent=Msa0095310-mRNA-1 |
| chr1_2 | exon | 79102570 | 79103082 | 79102570 | ID=Msa0095310-mRNA-1:exon:28096;Parent=Msa0095310-mRNA-1 |
| chr1_2 | CDS | 79103805 | 79103894 | 79103805 | ID=Msa0095310-mRNA-1:cds;Parent=Msa0095310-mRNA-1 |
| chr1_2 | CDS | 79102570 | 79103082 | 79102570 | ID=Msa0095310-mRNA-1:cds;Parent=Msa0095310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
