AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0095190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0095190 MtrunA17_Chr4g0015651 97.770 269 6 0 21 289 241 509 0.0 533
Msa0095190 MtrunA17_Chr4g0016741 97.770 269 6 0 21 289 241 509 0.0 533
Msa0095190 MtrunA17_CPg0492941 97.770 269 6 0 21 289 241 509 0.0 533
Msa0095190 MtrunA17_Chr2g0278821 85.659 258 37 0 3 260 4 261 1.29e-160 448
Msa0095190 MtrunA17_MTg0490471 64.844 256 81 3 21 272 251 501 1.86e-107 321
Msa0095190 MtrunA17_Chr1g0211291 34.586 133 84 2 27 158 261 391 1.02e-14 73.9
Msa0095190 MtrunA17_Chr7g0250051 34.586 133 84 2 27 158 259 389 1.06e-14 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0095190 ATCG00120.1 91.760 267 22 0 21 287 241 507 4.72e-178 501
Msa0095190 ATMG01190.1 62.598 254 90 2 21 272 251 501 1.58e-103 311
Msa0095190 AT2G07698.1 62.598 254 90 2 21 272 521 771 1.39e-99 309
Msa0095190 AT4G38510.1 34.586 133 84 2 27 158 259 389 1.08e-14 74.3
Msa0095190 AT4G38510.3 34.586 133 84 2 27 158 259 389 1.08e-14 74.3
Msa0095190 AT4G38510.4 34.586 133 84 2 27 158 259 389 1.08e-14 74.3
Msa0095190 AT4G38510.2 34.586 133 84 2 27 158 259 389 1.08e-14 74.3
Msa0095190 AT4G38510.5 34.586 133 84 2 27 158 266 396 1.11e-14 74.3
Msa0095190 AT1G20260.1 34.586 133 84 2 27 158 259 389 1.19e-14 74.3
Msa0095190 AT1G76030.1 34.586 133 84 2 27 158 258 388 1.23e-14 74.3

Find 64 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATATGATTTCGTTAAATTT+AGG 0.221398 1_2:-79027476 None:intergenic
TTATTTACATTCTCGTCTTT+TGG 0.245014 1_2:+79026944 Msa0095190:CDS
GGTAGCTGGTAAATTAAAAT+TGG 0.278592 1_2:+79027202 Msa0095190:CDS
TAAATTTCTCGTTGAGTTAA+GGG 0.286893 1_2:+79027433 Msa0095190:CDS
TTCCAGGTGTGGTGCAGCTC+TGG 0.316388 1_2:+79026785 Msa0095190:intron
TTTACCAGCTACCTGTTTCA+TGG 0.322039 1_2:-79027192 None:intergenic
GTAAATTTCTCGTTGAGTTA+AGG 0.332779 1_2:+79027432 Msa0095190:CDS
GTTATTTCCGTTTCCATAGT+TGG 0.348375 1_2:-79026405 None:intergenic
TTGAGCCGCCGATCCAACTA+TGG 0.361475 1_2:+79026392 Msa0095190:CDS
AAATCAGACCAGCTATGAAT+TGG 0.361914 1_2:-79026428 None:intergenic
GCGATAAGCCTGTGCTTGTT+TGG 0.364708 1_2:-79026862 None:intergenic
CCTGATTGGGTCTCAACTAT+TGG 0.368964 1_2:-79027020 None:intergenic
TGGTAAATTAAAATTGGAAT+TGG 0.382867 1_2:+79027208 Msa0095190:CDS
CACAGTGAGAGGAGCTGATT+GGG 0.383779 1_2:-79027339 None:intergenic
CCAATAGTTGAGACCCAATC+AGG 0.395916 1_2:+79027020 Msa0095190:CDS
CCTGAATAGCTTCCTTCAAA+AGG 0.405866 1_2:-79027532 None:intergenic
TCAAATTAAAGCCATGAAAC+AGG 0.408465 1_2:+79027181 Msa0095190:CDS
CCGGGATACGCTTCGCGACC+TGG 0.409309 1_2:-79026912 None:intergenic
AAGCTGAAACATCTCCTGAT+TGG 0.409535 1_2:-79027034 None:intergenic
GCTAAATTAAGTTCTCAGTT+AGG 0.415873 1_2:+79026975 Msa0095190:CDS
CAGATAATAACTATTTATAC+TGG 0.421148 1_2:+79027368 Msa0095190:CDS
TCTTCTACCAAGACATTCAC+TGG 0.425545 1_2:+79027497 Msa0095190:CDS
AAATATTTGGCCATCTGTAA+TGG 0.434228 1_2:-79027078 None:intergenic
CCACAGTGAGAGGAGCTGAT+TGG 0.438205 1_2:-79027340 None:intergenic
GGTATTTCCGTTTCCAGAGT+TGG 0.443512 1_2:+79027149 Msa0095190:CDS
GTAATGGAAATTACATTAGT+AGG 0.444650 1_2:-79027062 None:intergenic
TAAAGCTACGCAAAATCAAT+TGG 0.449089 1_2:+79027280 Msa0095190:CDS
TTCGTAATAGAAGAGACATT+TGG 0.452176 1_2:-79026884 None:intergenic
AGCTGAAACATCTCCTGATT+GGG 0.452206 1_2:-79027033 None:intergenic
ATAAGCCTGTGCTTGTTTGG+AGG 0.462375 1_2:-79026859 None:intergenic
TGCTTCCCCAGTGAATGTCT+TGG 0.469159 1_2:-79027504 None:intergenic
CCAGGTCGCGAAGCGTATCC+CGG 0.478786 1_2:+79026912 Msa0095190:CDS
TGATTCATTAGAAATTGATC+AGG 0.481395 1_2:+79027406 Msa0095190:CDS
TAACTGAGAACTTAATTTAG+CGG 0.485288 1_2:-79026973 None:intergenic
CGCCGATCCAACTCTGGAAA+CGG 0.485937 1_2:-79027156 None:intergenic
CTGAATAGCTTCCTTCAAAA+GGG 0.494622 1_2:-79027531 None:intergenic
TTCCGTTTCCATAGTTGGAT+CGG 0.497698 1_2:-79026400 None:intergenic
CGCCGATCCAACTATGGAAA+CGG 0.498727 1_2:+79026398 Msa0095190:CDS
TTCCGTTTCCAGAGTTGGAT+CGG 0.499691 1_2:+79027154 Msa0095190:CDS
AATCAGACCAGCTATGAATT+GGG 0.503370 1_2:-79026427 None:intergenic
TCTGCCGATCTATTCAATGC+TGG 0.509351 1_2:+79027104 Msa0095190:CDS
GAAATAACCCAATTCATAGC+TGG 0.514808 1_2:+79026420 Msa0095190:CDS
TGATTAAAGTGTGACGTTCA+CGG 0.516487 1_2:-79026824 None:intergenic
TTGAGCCGCCGATCCAACTC+TGG 0.524235 1_2:-79027162 None:intergenic
TAAGCCTGTGCTTGTTTGGA+GGG 0.526272 1_2:-79026858 None:intergenic
GAAATACCCACATTAATAGC+TGG 0.538501 1_2:-79027134 None:intergenic
GGAAGCTATTCAGGAACAGA+TGG 0.538751 1_2:+79027541 Msa0095190:CDS
ACTATTTATACTGGAACGAA+TGG 0.546292 1_2:+79027377 Msa0095190:CDS
ATCTGTTCTTCCACAGTGAG+AGG 0.551959 1_2:-79027350 None:intergenic
AATGTAATTTCCATTACAGA+TGG 0.557336 1_2:+79027068 Msa0095190:CDS
AAAGCCATGAAACAGGTAGC+TGG 0.558354 1_2:+79027188 Msa0095190:CDS
CTTCTACCAAGACATTCACT+GGG 0.561896 1_2:+79027498 Msa0095190:CDS
TTAAGTTCTCAGTTAGGTGA+AGG 0.563580 1_2:+79026981 Msa0095190:CDS
CGATCCCTCCAAACAAGCAC+AGG 0.574680 1_2:+79026854 Msa0095190:CDS
CTTCTATTACGAAGACCACC+AGG 0.597315 1_2:+79026894 Msa0095190:CDS
ATCAGACCAGCTATTAATGT+GGG 0.604091 1_2:+79027128 Msa0095190:CDS
AATCAGACCAGCTATTAATG+TGG 0.625394 1_2:+79027127 Msa0095190:CDS
GATTCCAGCATTGAATAGAT+CGG 0.626418 1_2:-79027108 None:intergenic
ACGCAAAATCAATTGGCAAG+AGG 0.645378 1_2:+79027287 Msa0095190:CDS
CGTTTCCATAGTTGGATCGG+CGG 0.652173 1_2:-79026397 None:intergenic
CGTTTCCAGAGTTGGATCGG+CGG 0.663289 1_2:+79027157 Msa0095190:CDS
CCAATCAGCTCCTCTCACTG+TGG 0.687803 1_2:+79027340 Msa0095190:CDS
GGATACGCTTCGCGACCTGG+TGG 0.699302 1_2:-79026909 None:intergenic
TTCTACCAAGACATTCACTG+GGG 0.788728 1_2:+79027499 Msa0095190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTACATTCTAGTCTTT+TGG - chr1_2:79026614-79026633 None:intergenic 20.0%
!! GATCGTCATAAATATTAAAT+TGG + chr1_2:79026717-79026736 Msa0095190:intron 20.0%
!! ATGTAAATAAAAAACATCTC+CGG - chr1_2:79026934-79026953 None:intergenic 20.0%
!! TGGTAAATTAAAATTGGAAT+TGG + chr1_2:79027208-79027227 Msa0095190:CDS 20.0%
!! CAGATAATAACTATTTATAC+TGG + chr1_2:79027368-79027387 Msa0095190:CDS 20.0%
!! GATATGATTTCGTTAAATTT+AGG - chr1_2:79027479-79027498 None:intergenic 20.0%
!!! TTATTTACATTCTAGTCTTT+TGG - chr1_2:79026614-79026633 None:intergenic 20.0%
!! GATCGTCATAAATATTAAAT+TGG + chr1_2:79026717-79026736 Msa0095190:intron 20.0%
!! ATGTAAATAAAAAACATCTC+CGG - chr1_2:79026934-79026953 None:intergenic 20.0%
!! TGGTAAATTAAAATTGGAAT+TGG + chr1_2:79027208-79027227 Msa0095190:CDS 20.0%
!! CAGATAATAACTATTTATAC+TGG + chr1_2:79027368-79027387 Msa0095190:CDS 20.0%
!! GATATGATTTCGTTAAATTT+AGG - chr1_2:79027479-79027498 None:intergenic 20.0%
! AATGTAATTCTCATTACAGA+TGG - chr1_2:79026489-79026508 None:intergenic 25.0%
! ATGTAAATAAAAAACCTCTC+CGG + chr1_2:79026624-79026643 Msa0095190:intron 25.0%
! AATATTAAATTGGACGTTCA+CGG + chr1_2:79026727-79026746 Msa0095190:intron 25.0%
! TGTAAATAAAAAACATCTCC+GGG - chr1_2:79026933-79026952 None:intergenic 25.0%
!! TTATTTACATTCTCGTCTTT+TGG + chr1_2:79026944-79026963 Msa0095190:CDS 25.0%
! TAACTGAGAACTTAATTTAG+CGG - chr1_2:79026976-79026995 None:intergenic 25.0%
!! GTAATGGAAATTACATTAGT+AGG - chr1_2:79027065-79027084 None:intergenic 25.0%
! AATGTAATTTCCATTACAGA+TGG + chr1_2:79027068-79027087 Msa0095190:CDS 25.0%
! TGATTCATTAGAAATTGATC+AGG + chr1_2:79027406-79027425 Msa0095190:CDS 25.0%
! TAAATTTCTCGTTGAGTTAA+GGG + chr1_2:79027433-79027452 Msa0095190:CDS 25.0%
! AATGTAATTCTCATTACAGA+TGG - chr1_2:79026489-79026508 None:intergenic 25.0%
! ATGTAAATAAAAAACCTCTC+CGG + chr1_2:79026624-79026643 Msa0095190:intron 25.0%
! AATATTAAATTGGACGTTCA+CGG + chr1_2:79026727-79026746 Msa0095190:intron 25.0%
! TGTAAATAAAAAACATCTCC+GGG - chr1_2:79026933-79026952 None:intergenic 25.0%
!! TTATTTACATTCTCGTCTTT+TGG + chr1_2:79026944-79026963 Msa0095190:CDS 25.0%
! TAACTGAGAACTTAATTTAG+CGG - chr1_2:79026976-79026995 None:intergenic 25.0%
!! GTAATGGAAATTACATTAGT+AGG - chr1_2:79027065-79027084 None:intergenic 25.0%
! AATGTAATTTCCATTACAGA+TGG + chr1_2:79027068-79027087 Msa0095190:CDS 25.0%
! TGATTCATTAGAAATTGATC+AGG + chr1_2:79027406-79027425 Msa0095190:CDS 25.0%
! TAAATTTCTCGTTGAGTTAA+GGG + chr1_2:79027433-79027452 Msa0095190:CDS 25.0%
! ATTTCCAGCATTGAATAGAT+CGG + chr1_2:79026447-79026466 Msa0095190:intron 30.0%
GCTAAATTAATTTCTCAGTG+AGG - chr1_2:79026584-79026603 None:intergenic 30.0%
TTCGTAATAGAAGAGACATT+TGG - chr1_2:79026887-79026906 None:intergenic 30.0%
GCTAAATTAAGTTCTCAGTT+AGG + chr1_2:79026975-79026994 Msa0095190:CDS 30.0%
AAATATTTGGCCATCTGTAA+TGG - chr1_2:79027081-79027100 None:intergenic 30.0%
GATCGGCAGATAAAAATATT+TGG - chr1_2:79027094-79027113 None:intergenic 30.0%
TCAAATTAAAGCCATGAAAC+AGG + chr1_2:79027181-79027200 Msa0095190:CDS 30.0%
GGTAGCTGGTAAATTAAAAT+TGG + chr1_2:79027202-79027221 Msa0095190:CDS 30.0%
TAAAGCTACGCAAAATCAAT+TGG + chr1_2:79027280-79027299 Msa0095190:CDS 30.0%
ACTATTTATACTGGAACGAA+TGG + chr1_2:79027377-79027396 Msa0095190:CDS 30.0%
GTAAATTTCTCGTTGAGTTA+AGG + chr1_2:79027432-79027451 Msa0095190:CDS 30.0%
! ATTTCCAGCATTGAATAGAT+CGG + chr1_2:79026447-79026466 Msa0095190:intron 30.0%
GCTAAATTAATTTCTCAGTG+AGG - chr1_2:79026584-79026603 None:intergenic 30.0%
TTCGTAATAGAAGAGACATT+TGG - chr1_2:79026887-79026906 None:intergenic 30.0%
GCTAAATTAAGTTCTCAGTT+AGG + chr1_2:79026975-79026994 Msa0095190:CDS 30.0%
AAATATTTGGCCATCTGTAA+TGG - chr1_2:79027081-79027100 None:intergenic 30.0%
GATCGGCAGATAAAAATATT+TGG - chr1_2:79027094-79027113 None:intergenic 30.0%
TCAAATTAAAGCCATGAAAC+AGG + chr1_2:79027181-79027200 Msa0095190:CDS 30.0%
GGTAGCTGGTAAATTAAAAT+TGG + chr1_2:79027202-79027221 Msa0095190:CDS 30.0%
TAAAGCTACGCAAAATCAAT+TGG + chr1_2:79027280-79027299 Msa0095190:CDS 30.0%
ACTATTTATACTGGAACGAA+TGG + chr1_2:79027377-79027396 Msa0095190:CDS 30.0%
GTAAATTTCTCGTTGAGTTA+AGG + chr1_2:79027432-79027451 Msa0095190:CDS 30.0%
! GTTATTTCCGTTTCCATAGT+TGG - chr1_2:79026408-79026427 None:intergenic 35.0%
GAAATAACCCAATTCATAGC+TGG + chr1_2:79026420-79026439 Msa0095190:CDS 35.0%
AATCAGACCAGCTATGAATT+GGG - chr1_2:79026430-79026449 None:intergenic 35.0%
AAATCAGACCAGCTATGAAT+TGG - chr1_2:79026431-79026450 None:intergenic 35.0%
! AGATCGGCAGATAAAGATTT+TGG + chr1_2:79026463-79026482 Msa0095190:intron 35.0%
AGCTTAAAACATCTCCTGAT+TGG + chr1_2:79026522-79026541 Msa0095190:intron 35.0%
GCTTAAAACATCTCCTGATT+GGG + chr1_2:79026523-79026542 Msa0095190:intron 35.0%
TTAATTTCTCAGTGAGGTGA+AGG - chr1_2:79026578-79026597 None:intergenic 35.0%
CTCGTAATAGAAGAGACATT+TGG + chr1_2:79026670-79026689 Msa0095190:intron 35.0%
TGATTAAAGTGTGACGTTCA+CGG - chr1_2:79026827-79026846 None:intergenic 35.0%
TTAAGTTCTCAGTTAGGTGA+AGG + chr1_2:79026981-79027000 Msa0095190:CDS 35.0%
! GATTCCAGCATTGAATAGAT+CGG - chr1_2:79027111-79027130 None:intergenic 35.0%
AATCAGACCAGCTATTAATG+TGG + chr1_2:79027127-79027146 Msa0095190:CDS 35.0%
ATCAGACCAGCTATTAATGT+GGG + chr1_2:79027128-79027147 Msa0095190:CDS 35.0%
GAAATACCCACATTAATAGC+TGG - chr1_2:79027137-79027156 None:intergenic 35.0%
CTGAATAGCTTCCTTCAAAA+GGG - chr1_2:79027534-79027553 None:intergenic 35.0%
! GATGGAACTCTTTTTACTTC+AGG + chr1_2:79027559-79027578 Msa0095190:CDS 35.0%
! GTTATTTCCGTTTCCATAGT+TGG - chr1_2:79026408-79026427 None:intergenic 35.0%
GAAATAACCCAATTCATAGC+TGG + chr1_2:79026420-79026439 Msa0095190:CDS 35.0%
AATCAGACCAGCTATGAATT+GGG - chr1_2:79026430-79026449 None:intergenic 35.0%
AAATCAGACCAGCTATGAAT+TGG - chr1_2:79026431-79026450 None:intergenic 35.0%
! AGATCGGCAGATAAAGATTT+TGG + chr1_2:79026463-79026482 Msa0095190:intron 35.0%
AGCTTAAAACATCTCCTGAT+TGG + chr1_2:79026522-79026541 Msa0095190:intron 35.0%
GCTTAAAACATCTCCTGATT+GGG + chr1_2:79026523-79026542 Msa0095190:intron 35.0%
TTAATTTCTCAGTGAGGTGA+AGG - chr1_2:79026578-79026597 None:intergenic 35.0%
CTCGTAATAGAAGAGACATT+TGG + chr1_2:79026670-79026689 Msa0095190:intron 35.0%
TGATTAAAGTGTGACGTTCA+CGG - chr1_2:79026827-79026846 None:intergenic 35.0%
TTAAGTTCTCAGTTAGGTGA+AGG + chr1_2:79026981-79027000 Msa0095190:CDS 35.0%
! GATTCCAGCATTGAATAGAT+CGG - chr1_2:79027111-79027130 None:intergenic 35.0%
AATCAGACCAGCTATTAATG+TGG + chr1_2:79027127-79027146 Msa0095190:CDS 35.0%
ATCAGACCAGCTATTAATGT+GGG + chr1_2:79027128-79027147 Msa0095190:CDS 35.0%
GAAATACCCACATTAATAGC+TGG - chr1_2:79027137-79027156 None:intergenic 35.0%
CTGAATAGCTTCCTTCAAAA+GGG - chr1_2:79027534-79027553 None:intergenic 35.0%
! GATGGAACTCTTTTTACTTC+AGG + chr1_2:79027559-79027578 Msa0095190:CDS 35.0%
TTCCGTTTCCATAGTTGGAT+CGG - chr1_2:79026403-79026422 None:intergenic 40.0%
AGCTGAAACATCTCCTGATT+GGG - chr1_2:79027036-79027055 None:intergenic 40.0%
AAGCTGAAACATCTCCTGAT+TGG - chr1_2:79027037-79027056 None:intergenic 40.0%
TTTACCAGCTACCTGTTTCA+TGG - chr1_2:79027195-79027214 None:intergenic 40.0%
ACGCAAAATCAATTGGCAAG+AGG + chr1_2:79027287-79027306 Msa0095190:CDS 40.0%
TCTTCTACCAAGACATTCAC+TGG + chr1_2:79027497-79027516 Msa0095190:CDS 40.0%
CTTCTACCAAGACATTCACT+GGG + chr1_2:79027498-79027517 Msa0095190:CDS 40.0%
TTCTACCAAGACATTCACTG+GGG + chr1_2:79027499-79027518 Msa0095190:CDS 40.0%
CCTGAATAGCTTCCTTCAAA+AGG - chr1_2:79027535-79027554 None:intergenic 40.0%
!! CCTTTTGAAGGAAGCTATTC+AGG + chr1_2:79027532-79027551 Msa0095190:CDS 40.0%
TTCCGTTTCCATAGTTGGAT+CGG - chr1_2:79026403-79026422 None:intergenic 40.0%
AGCTGAAACATCTCCTGATT+GGG - chr1_2:79027036-79027055 None:intergenic 40.0%
AAGCTGAAACATCTCCTGAT+TGG - chr1_2:79027037-79027056 None:intergenic 40.0%
TTTACCAGCTACCTGTTTCA+TGG - chr1_2:79027195-79027214 None:intergenic 40.0%
ACGCAAAATCAATTGGCAAG+AGG + chr1_2:79027287-79027306 Msa0095190:CDS 40.0%
TCTTCTACCAAGACATTCAC+TGG + chr1_2:79027497-79027516 Msa0095190:CDS 40.0%
CTTCTACCAAGACATTCACT+GGG + chr1_2:79027498-79027517 Msa0095190:CDS 40.0%
TTCTACCAAGACATTCACTG+GGG + chr1_2:79027499-79027518 Msa0095190:CDS 40.0%
CCTGAATAGCTTCCTTCAAA+AGG - chr1_2:79027535-79027554 None:intergenic 40.0%
!! CCTTTTGAAGGAAGCTATTC+AGG + chr1_2:79027532-79027551 Msa0095190:CDS 40.0%
TCTGCCGATCTATTCAATGC+TGG - chr1_2:79027104-79027123 None:intergenic 45.0%
CACAATAGTGAGACCCAATC+AGG - chr1_2:79026539-79026558 None:intergenic 45.0%
! ATAAGCCTGTGCTTGTTGGA+GGG + chr1_2:79026695-79026714 Msa0095190:intron 45.0%
TAAGCCTGTGCTTGTTTGGA+GGG - chr1_2:79026861-79026880 None:intergenic 45.0%
ATAAGCCTGTGCTTGTTTGG+AGG - chr1_2:79026862-79026881 None:intergenic 45.0%
CTTCTATTACGAAGACCACC+AGG + chr1_2:79026894-79026913 Msa0095190:CDS 45.0%
CCTGATTGGGTCTCAACTAT+TGG - chr1_2:79027023-79027042 None:intergenic 45.0%
CCAATAGTTGAGACCCAATC+AGG + chr1_2:79027020-79027039 Msa0095190:CDS 45.0%
TCTGCCGATCTATTCAATGC+TGG + chr1_2:79027104-79027123 Msa0095190:CDS 45.0%
GGTATTTCCGTTTCCAGAGT+TGG + chr1_2:79027149-79027168 Msa0095190:CDS 45.0%
TTCCGTTTCCAGAGTTGGAT+CGG + chr1_2:79027154-79027173 Msa0095190:CDS 45.0%
AAAGCCATGAAACAGGTAGC+TGG + chr1_2:79027188-79027207 Msa0095190:CDS 45.0%
ATCTGTTCTTCCACAGTGAG+AGG - chr1_2:79027353-79027372 None:intergenic 45.0%
GGAAGCTATTCAGGAACAGA+TGG + chr1_2:79027541-79027560 Msa0095190:CDS 45.0%
TCTGCCGATCTATTCAATGC+TGG - chr1_2:79027104-79027123 None:intergenic 45.0%
CACAATAGTGAGACCCAATC+AGG - chr1_2:79026539-79026558 None:intergenic 45.0%
! ATAAGCCTGTGCTTGTTGGA+GGG + chr1_2:79026695-79026714 Msa0095190:intron 45.0%
TAAGCCTGTGCTTGTTTGGA+GGG - chr1_2:79026861-79026880 None:intergenic 45.0%
ATAAGCCTGTGCTTGTTTGG+AGG - chr1_2:79026862-79026881 None:intergenic 45.0%
CTTCTATTACGAAGACCACC+AGG + chr1_2:79026894-79026913 Msa0095190:CDS 45.0%
CCTGATTGGGTCTCAACTAT+TGG - chr1_2:79027023-79027042 None:intergenic 45.0%
CCAATAGTTGAGACCCAATC+AGG + chr1_2:79027020-79027039 Msa0095190:CDS 45.0%
TCTGCCGATCTATTCAATGC+TGG + chr1_2:79027104-79027123 Msa0095190:CDS 45.0%
GGTATTTCCGTTTCCAGAGT+TGG + chr1_2:79027149-79027168 Msa0095190:CDS 45.0%
TTCCGTTTCCAGAGTTGGAT+CGG + chr1_2:79027154-79027173 Msa0095190:CDS 45.0%
AAAGCCATGAAACAGGTAGC+TGG + chr1_2:79027188-79027207 Msa0095190:CDS 45.0%
ATCTGTTCTTCCACAGTGAG+AGG - chr1_2:79027353-79027372 None:intergenic 45.0%
GGAAGCTATTCAGGAACAGA+TGG + chr1_2:79027541-79027560 Msa0095190:CDS 45.0%
CGTTTCCATAGTTGGATCGG+CGG - chr1_2:79026400-79026419 None:intergenic 50.0%
CGCCGATCCAACTATGGAAA+CGG + chr1_2:79026398-79026417 Msa0095190:CDS 50.0%
CTTCTATTACGAGACCACCC+AGG - chr1_2:79026663-79026682 None:intergenic 50.0%
! GATAAGCCTGTGCTTGTTGG+AGG + chr1_2:79026694-79026713 Msa0095190:intron 50.0%
GCGATAAGCCTGTGCTTGTT+TGG - chr1_2:79026692-79026711 None:intergenic 50.0%
CACAGTGAGAGGAGCTGATT+GGG - chr1_2:79027342-79027361 None:intergenic 50.0%
TGCTTCCCCAGTGAATGTCT+TGG - chr1_2:79027507-79027526 None:intergenic 50.0%
! GGAAGCAGAAGCCCTTTTGA+AGG + chr1_2:79027520-79027539 Msa0095190:CDS 50.0%
CGTTTCCATAGTTGGATCGG+CGG - chr1_2:79026400-79026419 None:intergenic 50.0%
CGCCGATCCAACTATGGAAA+CGG + chr1_2:79026398-79026417 Msa0095190:CDS 50.0%
CTTCTATTACGAGACCACCC+AGG - chr1_2:79026663-79026682 None:intergenic 50.0%
! GATAAGCCTGTGCTTGTTGG+AGG + chr1_2:79026694-79026713 Msa0095190:intron 50.0%
GCGATAAGCCTGTGCTTGTT+TGG - chr1_2:79026692-79026711 None:intergenic 50.0%
CACAGTGAGAGGAGCTGATT+GGG - chr1_2:79027342-79027361 None:intergenic 50.0%
TGCTTCCCCAGTGAATGTCT+TGG - chr1_2:79027507-79027526 None:intergenic 50.0%
! GGAAGCAGAAGCCCTTTTGA+AGG + chr1_2:79027520-79027539 Msa0095190:CDS 50.0%
TTGAGCCGCCGATCCAACTA+TGG + chr1_2:79026392-79026411 Msa0095190:CDS 55.0%
GGCGATAAGCCTGTGCTTGT+TGG + chr1_2:79026691-79026710 Msa0095190:intron 55.0%
ACGATCCCTCCAACAAGCAC+AGG - chr1_2:79026703-79026722 None:intergenic 55.0%
CCTGGAACAGGTGCAGAATC+TGG - chr1_2:79026772-79026791 None:intergenic 55.0%
CCAGATTCTGCACCTGTTCC+AGG + chr1_2:79026769-79026788 Msa0095190:intron 55.0%
TTCTGCACCTGTTCCAGGTG+TGG + chr1_2:79026774-79026793 Msa0095190:intron 55.0%
CGATCCCTCCAAACAAGCAC+AGG + chr1_2:79026854-79026873 Msa0095190:CDS 55.0%
! CGCCGATCCAACTCTGGAAA+CGG - chr1_2:79027159-79027178 None:intergenic 55.0%
CGTTTCCAGAGTTGGATCGG+CGG + chr1_2:79027157-79027176 Msa0095190:CDS 55.0%
CCACAGTGAGAGGAGCTGAT+TGG - chr1_2:79027343-79027362 None:intergenic 55.0%
CCAATCAGCTCCTCTCACTG+TGG + chr1_2:79027340-79027359 Msa0095190:CDS 55.0%
TTGAGCCGCCGATCCAACTA+TGG + chr1_2:79026392-79026411 Msa0095190:CDS 55.0%
GGCGATAAGCCTGTGCTTGT+TGG + chr1_2:79026691-79026710 Msa0095190:intron 55.0%
ACGATCCCTCCAACAAGCAC+AGG - chr1_2:79026703-79026722 None:intergenic 55.0%
CCTGGAACAGGTGCAGAATC+TGG - chr1_2:79026772-79026791 None:intergenic 55.0%
CCAGATTCTGCACCTGTTCC+AGG + chr1_2:79026769-79026788 Msa0095190:intron 55.0%
TTCTGCACCTGTTCCAGGTG+TGG + chr1_2:79026774-79026793 Msa0095190:intron 55.0%
CGATCCCTCCAAACAAGCAC+AGG + chr1_2:79026854-79026873 Msa0095190:CDS 55.0%
! CGCCGATCCAACTCTGGAAA+CGG - chr1_2:79027159-79027178 None:intergenic 55.0%
CGTTTCCAGAGTTGGATCGG+CGG + chr1_2:79027157-79027176 Msa0095190:CDS 55.0%
CCACAGTGAGAGGAGCTGAT+TGG - chr1_2:79027343-79027362 None:intergenic 55.0%
CCAATCAGCTCCTCTCACTG+TGG + chr1_2:79027340-79027359 Msa0095190:CDS 55.0%
AGCTGCACCACACCTGGAAC+AGG - chr1_2:79026784-79026803 None:intergenic 60.0%
TTCCAGGTGTGGTGCAGCTC+TGG + chr1_2:79026785-79026804 Msa0095190:intron 60.0%
TTGAGCCGCCGATCCAACTC+TGG - chr1_2:79027165-79027184 None:intergenic 60.0%
AGCTGCACCACACCTGGAAC+AGG - chr1_2:79026784-79026803 None:intergenic 60.0%
TTCCAGGTGTGGTGCAGCTC+TGG + chr1_2:79026785-79026804 Msa0095190:intron 60.0%
TTGAGCCGCCGATCCAACTC+TGG - chr1_2:79027165-79027184 None:intergenic 60.0%
GTCGCGAAGCGTATCCGGAG+AGG - chr1_2:79026641-79026660 None:intergenic 65.0%
TCCGGATACGCTTCGCGACC+TGG + chr1_2:79026642-79026661 Msa0095190:intron 65.0%
CCCAGGTCGCGAAGCGTATC+CGG - chr1_2:79026646-79026665 None:intergenic 65.0%
CCGGATACGCTTCGCGACCT+GGG + chr1_2:79026643-79026662 Msa0095190:intron 65.0%
GATACGCTTCGCGACCTGGG+TGG + chr1_2:79026646-79026665 Msa0095190:intron 65.0%
AGCCAGAGCTGCACCACACC+TGG - chr1_2:79026790-79026809 None:intergenic 65.0%
GGATACGCTTCGCGACCTGG+TGG - chr1_2:79026645-79026664 None:intergenic 65.0%
CCAGGTCGCGAAGCGTATCC+CGG + chr1_2:79026912-79026931 Msa0095190:CDS 65.0%
GTCGCGAAGCGTATCCGGAG+AGG - chr1_2:79026641-79026660 None:intergenic 65.0%
TCCGGATACGCTTCGCGACC+TGG + chr1_2:79026642-79026661 Msa0095190:intron 65.0%
CCCAGGTCGCGAAGCGTATC+CGG - chr1_2:79026646-79026665 None:intergenic 65.0%
CCGGATACGCTTCGCGACCT+GGG + chr1_2:79026643-79026662 Msa0095190:intron 65.0%
GATACGCTTCGCGACCTGGG+TGG + chr1_2:79026646-79026665 Msa0095190:intron 65.0%
AGCCAGAGCTGCACCACACC+TGG - chr1_2:79026790-79026809 None:intergenic 65.0%
GGATACGCTTCGCGACCTGG+TGG - chr1_2:79026645-79026664 None:intergenic 65.0%
CCAGGTCGCGAAGCGTATCC+CGG + chr1_2:79026912-79026931 Msa0095190:CDS 65.0%
CCGGGATACGCTTCGCGACC+TGG - chr1_2:79026915-79026934 None:intergenic 70.0%
CCGGGATACGCTTCGCGACC+TGG - chr1_2:79026915-79026934 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 79026380 79027601 79026380 ID=Msa0095190;Name=Msa0095190
chr1_2 mRNA 79026380 79027601 79026380 ID=Msa0095190-mRNA-1;Parent=Msa0095190;Name=Msa0095190-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0|0|0.5|1|1|2|0|290
chr1_2 exon 79026380 79026441 79026380 ID=Msa0095190-mRNA-1:exon:28062;Parent=Msa0095190-mRNA-1
chr1_2 exon 79026791 79027601 79026791 ID=Msa0095190-mRNA-1:exon:28063;Parent=Msa0095190-mRNA-1
chr1_2 CDS 79026380 79026441 79026380 ID=Msa0095190-mRNA-1:cds;Parent=Msa0095190-mRNA-1
chr1_2 CDS 79026791 79027601 79026791 ID=Msa0095190-mRNA-1:cds;Parent=Msa0095190-mRNA-1
Gene Sequence

>Msa0095190

ATGGCTTTAATTTTGAGCCGCCGATCCAACTATGGAAACGGAAATAACCCAATTCATAGCTGGTGTGGTGCAGCTCTGGCTGAATATTTTATGTACCGTGAACGTCACACTTTAATCATTTATGACGATCCCTCCAAACAAGCACAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCACCAGGTCGCGAAGCGTATCCCGGAGATGTTTTTTATTTACATTCTCGTCTTTTGGAAAGAGCCGCTAAATTAAGTTCTCAGTTAGGTGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACCCAATCAGGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCCATTACAGATGGCCAAATATTTTTATCTGCCGATCTATTCAATGCTGGAATCAGACCAGCTATTAATGTGGGTATTTCCGTTTCCAGAGTTGGATCGGCGGCTCAAATTAAAGCCATGAAACAGGTAGCTGGTAAATTAAAATTGGAATTGGCACAATTCGCAGAATTAGAAGCTTTTGCACAATTCGCTTCTGATCTCGATAAAGCTACGCAAAATCAATTGGCAAGAGGTCAACGATTGCGCGAGTTGCTTAAACAATCCCAATCAGCTCCTCTCACTGTGGAAGAACAGATAATAACTATTTATACTGGAACGAATGGTTATCTTGATTCATTAGAAATTGATCAGGTACGTAAATTTCTCGTTGAGTTAAGGGCTTATTTAAAAACGAATAAACCTAAATTTAACGAAATCATATCTTCTACCAAGACATTCACTGGGGAAGCAGAAGCCCTTTTGAAGGAAGCTATTCAGGAACAGATGGAACTCTTTTTACTTCAGGAACAAGTAGAAAAAAATTGA

Protein sequence

>Msa0095190

MALILSRRSNYGNGNNPIHSWCGAALAEYFMYRERHTLIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIITIYTGTNGYLDSLEIDQVRKFLVELRAYLKTNKPKFNEIISSTKTFTGEAEALLKEAIQEQMELFLLQEQVEKN*