Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095840 | XP_003590569.2 | 97.377 | 305 | 8 | 0 | 1 | 305 | 1 | 305 | 0.0 | 603 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095840 | sp|F4HZB2|BCHA1_ARATH | 66.558 | 308 | 96 | 4 | 1 | 305 | 1 | 304 | 6.50e-119 | 379 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095840 | G7ICR2 | 97.377 | 305 | 8 | 0 | 1 | 305 | 1 | 305 | 0.0 | 603 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095830 | Msa0095840 | 0.808417 | 3.129243e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095840 | MtrunA17_Chr1g0185101 | 97.377 | 305 | 8 | 0 | 1 | 305 | 1 | 305 | 0.0 | 603 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0095840 | AT1G03060.2 | 66.775 | 307 | 96 | 3 | 1 | 305 | 1 | 303 | 1.62e-121 | 384 |
| Msa0095840 | AT1G03060.3 | 66.775 | 307 | 96 | 3 | 1 | 305 | 1 | 303 | 1.75e-121 | 384 |
| Msa0095840 | AT1G03060.1 | 66.558 | 308 | 96 | 4 | 1 | 305 | 1 | 304 | 6.60e-120 | 379 |
| Msa0095840 | AT1G03060.4 | 66.558 | 308 | 96 | 4 | 1 | 305 | 1 | 304 | 7.06e-120 | 379 |
| Msa0095840 | AT4G02660.2 | 57.003 | 307 | 111 | 3 | 1 | 305 | 1 | 288 | 7.22e-102 | 327 |
| Msa0095840 | AT4G02660.3 | 57.003 | 307 | 111 | 3 | 1 | 305 | 1 | 288 | 7.57e-102 | 327 |
| Msa0095840 | AT4G02660.1 | 57.003 | 307 | 111 | 3 | 1 | 305 | 1 | 288 | 7.57e-102 | 327 |
Find 59 sgRNAs with CRISPR-Local
Find 381 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGGATTTCAAGAGATTT+TGG | 0.170685 | 1_3:-1202625 | Msa0095840:CDS |
| TCATGATCAGTAGCACTATT+TGG | 0.231485 | 1_3:+1200122 | None:intergenic |
| AAGCATCTATACTCAAATTC+AGG | 0.239452 | 1_3:+1202457 | None:intergenic |
| TCAGTGGGAATCCTTGTATC+TGG | 0.273571 | 1_3:-1200533 | Msa0095840:CDS |
| GCTCTTCTTCATCTCCTAAC+AGG | 0.329441 | 1_3:-1203663 | Msa0095840:intron |
| CAGCAGTAAAACAAGATCTT+TGG | 0.334620 | 1_3:-1200727 | Msa0095840:CDS |
| GATCTTTAACTTCTCTATAT+CGG | 0.345968 | 1_3:+1200749 | None:intergenic |
| GAAGGATCTGAACGATGAAA+TGG | 0.355024 | 1_3:-1203837 | Msa0095840:exon |
| GGACAGACATGAGCTGGAAT+TGG | 0.392837 | 1_3:-1202642 | Msa0095840:CDS |
| TAGATAAATATAAACCTGTT+AGG | 0.405029 | 1_3:+1203649 | None:intergenic |
| GGCCTTTGAATGGTTACATC+AGG | 0.409028 | 1_3:+1200143 | None:intergenic |
| TTCCCTTCCTCCCTCCGAAA+AGG | 0.419557 | 1_3:+1203911 | None:intergenic |
| GATTAGACAGCAAAATATTC+CGG | 0.426740 | 1_3:+1200190 | None:intergenic |
| AGCAAATTTATTAACGTCAG+TGG | 0.430571 | 1_3:-1200549 | Msa0095840:CDS |
| AGTAGAGATTGCTTGTCAAT+AGG | 0.442184 | 1_3:+1200218 | None:intergenic |
| AAAGAATATAATGTTGGTGT+TGG | 0.442610 | 1_3:-1200080 | Msa0095840:CDS |
| TCCCTTCCTCCCTCCGAAAA+GGG | 0.444047 | 1_3:+1203912 | None:intergenic |
| ATGTTGGTGTTGGGCAAAAC+CGG | 0.445890 | 1_3:-1200070 | Msa0095840:CDS |
| AGCACTATTTGGCCTTTGAA+TGG | 0.452787 | 1_3:+1200133 | None:intergenic |
| GGAAGGGAAATCGTTGGATC+TGG | 0.468394 | 1_3:-1203897 | Msa0095840:five_prime_UTR |
| AAGAATATAATGTTGGTGTT+GGG | 0.469542 | 1_3:-1200079 | Msa0095840:CDS |
| CAGTGGGAATCCTTGTATCT+GGG | 0.470088 | 1_3:-1200532 | Msa0095840:CDS |
| CAAGAAGGGCATTGAGAACA+TGG | 0.479897 | 1_3:+1200168 | None:intergenic |
| TGACGTTAATAAATTTGCTC+CGG | 0.480541 | 1_3:+1200553 | None:intergenic |
| AGCATCTATACTCAAATTCA+GGG | 0.483481 | 1_3:+1202458 | None:intergenic |
| GACGTTAATAAATTTGCTCC+GGG | 0.486643 | 1_3:+1200554 | None:intergenic |
| TTGTAGATTAGTAAGGCAGC+AGG | 0.496262 | 1_3:-1202433 | Msa0095840:CDS |
| AAAGACTTTAAAGAGAAGGT+TGG | 0.500677 | 1_3:-1203802 | Msa0095840:CDS |
| AAGGATCTGAACGATGAAAT+GGG | 0.501600 | 1_3:-1203836 | Msa0095840:exon |
| AGCAGCTCAGAGTTTGATAG+AGG | 0.504616 | 1_3:-1199650 | Msa0095840:CDS |
| AATCAGGGACAGACATGAGC+TGG | 0.506757 | 1_3:-1202648 | Msa0095840:intron |
| GCAAATTTATTAACGTCAGT+GGG | 0.513891 | 1_3:-1200548 | Msa0095840:CDS |
| GTGCAGGATGACATCAGTCC+CGG | 0.515031 | 1_3:-1200572 | Msa0095840:intron |
| GCTTAAAGACTTTAAAGAGA+AGG | 0.520129 | 1_3:-1203806 | Msa0095840:CDS |
| GATAAGAACCTTCTCAGAGC+TGG | 0.524524 | 1_3:+1202586 | None:intergenic |
| ATCAAACTCTGAGCTGCTGA+TGG | 0.529195 | 1_3:+1199655 | None:intergenic |
| GCTTTGCGAAGCTGAGAAGA+AGG | 0.529510 | 1_3:+1203684 | None:intergenic |
| AGAAGCATACCCCAGATACA+AGG | 0.529896 | 1_3:+1200522 | None:intergenic |
| ACTTCATAGACATGCTATGC+AGG | 0.534151 | 1_3:-1199530 | Msa0095840:intron |
| AACTCTGAGCTGCTGATGGA+TGG | 0.549176 | 1_3:+1199659 | None:intergenic |
| TCGGTCATCCAGCTCTGAGA+AGG | 0.552934 | 1_3:-1202594 | Msa0095840:intron |
| TGGGCAAAACCGGCGGCTCG+AGG | 0.556403 | 1_3:-1200060 | Msa0095840:intron |
| AGAAAGAAACCTCGAGCCGC+CGG | 0.563852 | 1_3:+1200051 | None:intergenic |
| TACTGATCATGAAGAACGGT+TGG | 0.566203 | 1_3:-1200111 | Msa0095840:CDS |
| GAAAACAATCAAAGACCCCT+TGG | 0.576592 | 1_3:+1199594 | None:intergenic |
| TGGTTACATCAGGATCAAGA+AGG | 0.591217 | 1_3:+1200153 | None:intergenic |
| GCTGCTGTTTCTCCTTCTCG+TGG | 0.592155 | 1_3:-1203727 | Msa0095840:CDS |
| GAGGGAGGAAGGGAAATCGT+TGG | 0.609371 | 1_3:-1203903 | Msa0095840:five_prime_UTR |
| ATCCTGATGTAACCATTCAA+AGG | 0.609917 | 1_3:-1200145 | Msa0095840:CDS |
| TGAAGTTGTATGCTGTGCAA+TGG | 0.620360 | 1_3:+1199547 | None:intergenic |
| AAGCAATCTCTACTCGACTC+CGG | 0.623243 | 1_3:-1200209 | Msa0095840:CDS |
| AGTGGGAATCCTTGTATCTG+GGG | 0.638325 | 1_3:-1200531 | Msa0095840:intron |
| TTGATGTTATCACCACGAGA+AGG | 0.642684 | 1_3:+1203715 | None:intergenic |
| AGACGGTGGTTGCGACGAAG+CGG | 0.648401 | 1_3:+1203762 | None:intergenic |
| GGTTACATCAGGATCAAGAA+GGG | 0.656686 | 1_3:+1200154 | None:intergenic |
| GCAGCAGAAGTAGAAGCAGA+CGG | 0.657814 | 1_3:+1203745 | None:intergenic |
| TTGGTGTTGGGCAAAACCGG+CGG | 0.660290 | 1_3:-1200067 | Msa0095840:CDS |
| GTGCTACTGATCATGAAGAA+CGG | 0.663286 | 1_3:-1200115 | Msa0095840:CDS |
| GCAGAAGTAGAAGCAGACGG+TGG | 0.713271 | 1_3:+1203748 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAAAAA+CGG | - | chr1_3:1199784-1199803 | Msa0095840:intron | 0.0% |
| !!! | TTTTTTTTTTTTTTTTGAAG+AGG | + | chr1_3:1199780-1199799 | None:intergenic | 10.0% |
| !!! | AAAAGCATTTTATAAAAATA+TGG | - | chr1_3:1200773-1200792 | Msa0095840:CDS | 10.0% |
| !! | ATTTAAAAAAATGTACAAAT+GGG | + | chr1_3:1202066-1202085 | None:intergenic | 10.0% |
| !! | AATTTAAAAAAATGTACAAA+TGG | + | chr1_3:1202067-1202086 | None:intergenic | 10.0% |
| !!! | TTTATATAATTTTAGATACT+CGG | - | chr1_3:1202427-1202446 | Msa0095840:CDS | 10.0% |
| !! | ACTATAAAAATTCAAATAAT+TGG | - | chr1_3:1202916-1202935 | Msa0095840:intron | 10.0% |
| !! | CTATAAAAATTCAAAATAAT+TGG | - | chr1_3:1203150-1203169 | Msa0095840:intron | 10.0% |
| !!! | TTTGATAATTGATTTTTGAA+TGG | - | chr1_3:1197867-1197886 | Msa0095840:intron | 15.0% |
| !!! | CTATTTATGTGTTTTTTTTA+TGG | - | chr1_3:1198522-1198541 | Msa0095840:intron | 15.0% |
| !! | TTACTAATATACTACTAATA+TGG | - | chr1_3:1198726-1198745 | Msa0095840:intron | 15.0% |
| !! | TAAAAGAATAAAAACAAAGA+AGG | + | chr1_3:1198901-1198920 | None:intergenic | 15.0% |
| !!! | TTGACATCATATTTTTATAT+TGG | - | chr1_3:1199932-1199951 | Msa0095840:intron | 15.0% |
| !!! | ATTATTGAATTTTATATTGC+TGG | - | chr1_3:1200013-1200032 | Msa0095840:intron | 15.0% |
| !!! | TAATATGAATTTTAAATCTG+TGG | - | chr1_3:1200723-1200742 | Msa0095840:CDS | 15.0% |
| !! | AAAGTTTATTTGTATGATAA+TGG | + | chr1_3:1200860-1200879 | None:intergenic | 15.0% |
| !! | TTACAAAAAGAATATAATGT+TGG | - | chr1_3:1201728-1201747 | Msa0095840:intron | 15.0% |
| !! | ATGAATTTATTAACATCTAA+TGG | - | chr1_3:1201917-1201936 | Msa0095840:intron | 15.0% |
| !! | TGAATTTATTAACATCTAAT+GGG | - | chr1_3:1201918-1201937 | Msa0095840:intron | 15.0% |
| !!! | ACAATGAAATAATGTTTTTA+TGG | + | chr1_3:1202017-1202036 | None:intergenic | 15.0% |
| !!! | ATCTAAAATTATATAAACAG+CGG | + | chr1_3:1202424-1202443 | None:intergenic | 15.0% |
| !! | TATGTTGAAACATTTAATAT+TGG | + | chr1_3:1203359-1203378 | None:intergenic | 15.0% |
| !! | TAGATAAATATAAACCTGTT+AGG | + | chr1_3:1198168-1198187 | None:intergenic | 20.0% |
| !! | AGGAAAATAAACTTCAAAAT+AGG | + | chr1_3:1198207-1198226 | None:intergenic | 20.0% |
| !!! | TGATGAAATAGATTTTGATT+AGG | - | chr1_3:1198353-1198372 | Msa0095840:intron | 20.0% |
| !!! | GATGAAATAGATTTTGATTA+GGG | - | chr1_3:1198354-1198373 | Msa0095840:intron | 20.0% |
| !! | AAATTGTTCTTGAAAATTGA+AGG | - | chr1_3:1199557-1199576 | Msa0095840:CDS | 20.0% |
| !! | AATTGTTCTTGAAAATTGAA+GGG | - | chr1_3:1199558-1199577 | Msa0095840:CDS | 20.0% |
| !! | TATATCACAATTATCATAGT+TGG | - | chr1_3:1200096-1200115 | Msa0095840:CDS | 20.0% |
| !!! | AATAGATAAGTTCAGTTTTT+TGG | - | chr1_3:1200467-1200486 | Msa0095840:intron | 20.0% |
| !!! | GCATTTTATAAAAATATGGA+TGG | - | chr1_3:1200777-1200796 | Msa0095840:CDS | 20.0% |
| !! | ATACAAATAAACTTTAGATC+TGG | - | chr1_3:1200865-1200884 | Msa0095840:intron | 20.0% |
| !!! | CTGAGAATTTTGAAAAAATA+TGG | - | chr1_3:1200909-1200928 | Msa0095840:intron | 20.0% |
| !! | AAAAAAAATGTTATCCATGT+TGG | - | chr1_3:1200946-1200965 | Msa0095840:intron | 20.0% |
| !! | CCATCAATATTATTAAAAGT+CGG | + | chr1_3:1200988-1201007 | None:intergenic | 20.0% |
| !!! | TTCAATCTATTTTCTTATGT+AGG | - | chr1_3:1202092-1202111 | Msa0095840:intron | 20.0% |
| !! | ACAATGTTCAATATTAATGA+TGG | - | chr1_3:1202634-1202653 | Msa0095840:CDS | 20.0% |
| !! | CAATGTTCAATATTAATGAT+GGG | - | chr1_3:1202635-1202654 | Msa0095840:CDS | 20.0% |
| !!! | AAGTATATTCTGTTTTATGA+TGG | - | chr1_3:1202795-1202814 | Msa0095840:intron | 20.0% |
| !! | TTCAAATAATTGGATTACAA+AGG | - | chr1_3:1202926-1202945 | Msa0095840:intron | 20.0% |
| !! | ACATATAAAGTATAAACATG+TGG | - | chr1_3:1203093-1203112 | Msa0095840:intron | 20.0% |
| !!! | CAACAATACATTTTGTTAAA+TGG | - | chr1_3:1203192-1203211 | Msa0095840:intron | 20.0% |
| ! | CCTCAATCACATAAAAAAAA+AGG | + | chr1_3:1198227-1198246 | None:intergenic | 25.0% |
| !!! | CCTTTTTTTTTATGTGATTG+AGG | - | chr1_3:1198224-1198243 | Msa0095840:intron | 25.0% |
| ! | GAAGAAAAATATCAGCAAAT+CGG | + | chr1_3:1198423-1198442 | None:intergenic | 25.0% |
| !!! | TGTTTTGTGTGTTTTTTTGT+TGG | - | chr1_3:1198600-1198619 | Msa0095840:intron | 25.0% |
| !! | TAGTTAGATTTCGATTTTGT+CGG | - | chr1_3:1198670-1198689 | Msa0095840:intron | 25.0% |
| !!! | ATAATTATTTTGTCGCAACA+TGG | - | chr1_3:1199033-1199052 | Msa0095840:intron | 25.0% |
| !! | AAGTTATTGTGCTTTAAATC+AGG | - | chr1_3:1199150-1199169 | Msa0095840:intron | 25.0% |
| !! | AGTTATTGTGCTTTAAATCA+GGG | - | chr1_3:1199151-1199170 | Msa0095840:intron | 25.0% |
| !! | AATTGGATTTCAAGAGATTT+TGG | - | chr1_3:1199189-1199208 | Msa0095840:intron | 25.0% |
| !! | ATTGGATTTCAAGAGATTTT+GGG | - | chr1_3:1199190-1199209 | Msa0095840:intron | 25.0% |
| !!! | ATGCTTTTTGTAGATTAGTA+AGG | - | chr1_3:1199374-1199393 | Msa0095840:intron | 25.0% |
| !!! | TCAAGAACAATTTTTCAGTT+TGG | + | chr1_3:1199550-1199569 | None:intergenic | 25.0% |
| !!! | TTGGTTAACACCATTTTTTT+TGG | - | chr1_3:1199951-1199970 | Msa0095840:intron | 25.0% |
| !!! | TGGTTAACACCATTTTTTTT+GGG | - | chr1_3:1199952-1199971 | Msa0095840:intron | 25.0% |
| ! | GAATCTGATATTGCAAATAA+CGG | - | chr1_3:1200035-1200054 | Msa0095840:intron | 25.0% |
| !!! | TTTTGTTGTTTCATTGATGA+TGG | + | chr1_3:1200075-1200094 | None:intergenic | 25.0% |
| ! | CAATTCATTTCTTTACAGAT+AGG | - | chr1_3:1200431-1200450 | Msa0095840:intron | 25.0% |
| ! | TATAATTCTAAATAACCGCT+AGG | + | chr1_3:1200507-1200526 | None:intergenic | 25.0% |
| ! | AGATAAATAAGCATTCATGA+AGG | - | chr1_3:1200647-1200666 | Msa0095840:intron | 25.0% |
| ! | CAAAATTCTCAGAAAGAAAT+GGG | + | chr1_3:1200901-1200920 | None:intergenic | 25.0% |
| ! | TCAAAATTCTCAGAAAGAAA+TGG | + | chr1_3:1200902-1200921 | None:intergenic | 25.0% |
| !! | CCGACTTTTAATAATATTGA+TGG | - | chr1_3:1200985-1201004 | Msa0095840:intron | 25.0% |
| !!! | TAATAATATTGATGGTGAAC+AGG | - | chr1_3:1200993-1201012 | Msa0095840:intron | 25.0% |
| !! | ACATATATTCTCTTTTGTTG+TGG | - | chr1_3:1201027-1201046 | Msa0095840:intron | 25.0% |
| !!! | CATATATTCTCTTTTGTTGT+GGG | - | chr1_3:1201028-1201047 | Msa0095840:intron | 25.0% |
| !! | GATCTTTAACTTCTCTATAT+CGG | + | chr1_3:1201068-1201087 | None:intergenic | 25.0% |
| ! | ACACTAAACAACAAAACTAA+TGG | + | chr1_3:1201458-1201477 | None:intergenic | 25.0% |
| !!! | ATTAGTTTTGTTGTTTAGTG+TGG | - | chr1_3:1201457-1201476 | Msa0095840:intron | 25.0% |
| ! | AATAATGAAAAACCATCCAA+TGG | + | chr1_3:1201507-1201526 | None:intergenic | 25.0% |
| ! | AAAGAATATAATGTTGGTGT+TGG | - | chr1_3:1201734-1201753 | Msa0095840:intron | 25.0% |
| !! | AAGAATATAATGTTGGTGTT+GGG | - | chr1_3:1201735-1201754 | Msa0095840:intron | 25.0% |
| !! | GTTTTTATGGTTTTCTTCTA+TGG | + | chr1_3:1202004-1202023 | None:intergenic | 25.0% |
| ! | TTTCATTGTGAGTATATAAC+TGG | - | chr1_3:1202028-1202047 | Msa0095840:intron | 25.0% |
| ! | TTCATTGTGAGTATATAACT+GGG | - | chr1_3:1202029-1202048 | Msa0095840:intron | 25.0% |
| !! | TATTTTCTTATGTAGGTAGA+GGG | - | chr1_3:1202099-1202118 | Msa0095840:intron | 25.0% |
| !! | TAAGACAAGTTACTTTCAAA+CGG | + | chr1_3:1202538-1202557 | None:intergenic | 25.0% |
| ! | CTATAAACAAAGTGTAAGAT+CGG | + | chr1_3:1202566-1202585 | None:intergenic | 25.0% |
| !! | TTGTTGCAATTTTCATGTAA+AGG | - | chr1_3:1202770-1202789 | Msa0095840:intron | 25.0% |
| ! | ACATATGAAGTATAAACATG+TGG | - | chr1_3:1202861-1202880 | Msa0095840:intron | 25.0% |
| ! | ATAAGTTCTATTCTGTACAT+AGG | + | chr1_3:1203275-1203294 | None:intergenic | 25.0% |
| ! | TAACTAGATATATGTTGAAG+AGG | + | chr1_3:1203551-1203570 | None:intergenic | 25.0% |
| ! | TGCTTAACCAAATAAAGTTT+AGG | - | chr1_3:1203615-1203634 | Msa0095840:intron | 25.0% |
| ! | TTTGCAACCTAAACTTTATT+TGG | + | chr1_3:1203625-1203644 | None:intergenic | 25.0% |
| ! | TTAACTAGTTCATTAAGATC+TGG | + | chr1_3:1203694-1203713 | None:intergenic | 25.0% |
| !! | GCAGATAAAAGTTCTTTTAT+TGG | - | chr1_3:1203887-1203906 | Msa0095840:five_prime_UTR | 25.0% |
| !!! | TTCTTAATTTGATTTTGCAG+AGG | - | chr1_3:1204101-1204120 | Msa0095840:five_prime_UTR | 25.0% |
| ! | GTGTTTTCTTTTTCCCTTTT+CGG | - | chr1_3:1197889-1197908 | Msa0095840:intron | 30.0% |
| ! | GCTTAAAGACTTTAAAGAGA+AGG | - | chr1_3:1198008-1198027 | Msa0095840:intron | 30.0% |
| ! | AAAGACTTTAAAGAGAAGGT+TGG | - | chr1_3:1198012-1198031 | Msa0095840:intron | 30.0% |
| ! | GATATTTTTCTTCCAAGCTA+AGG | - | chr1_3:1198430-1198449 | Msa0095840:intron | 30.0% |
| CTAAGGTTTAGTTAACGAAA+TGG | - | chr1_3:1198447-1198466 | Msa0095840:intron | 30.0% | |
| !!! | TTTGTGTGTTTTTGTTGTTG+TGG | - | chr1_3:1198631-1198650 | Msa0095840:intron | 30.0% |
| ATAACTACTATATGCGAACA+AGG | + | chr1_3:1198778-1198797 | None:intergenic | 30.0% | |
| CGCATATAGTAGTTATTTGT+CGG | - | chr1_3:1198782-1198801 | Msa0095840:intron | 30.0% | |
| ! | TAGTAGTTATTTGTCGGTTA+TGG | - | chr1_3:1198788-1198807 | Msa0095840:intron | 30.0% |
| ! | TGAATTTTGGACTATTTGCT+TGG | - | chr1_3:1198873-1198892 | Msa0095840:intron | 30.0% |
| ! | ATTCTTTTATGACGCCATAA+TGG | - | chr1_3:1198912-1198931 | Msa0095840:intron | 30.0% |
| ATCAATAAACCTGACCATTA+TGG | + | chr1_3:1198929-1198948 | None:intergenic | 30.0% | |
| ATAGACCAAACAATAAACCA+AGG | + | chr1_3:1199088-1199107 | None:intergenic | 30.0% | |
| CACAATAACTTGAGATAAGA+TGG | + | chr1_3:1199141-1199160 | None:intergenic | 30.0% | |
| AGAAGGTTCTTATCATTGTT+TGG | - | chr1_3:1199237-1199256 | Msa0095840:intron | 30.0% | |
| AGCATCTATACTCAAATTCA+GGG | + | chr1_3:1199359-1199378 | None:intergenic | 30.0% | |
| AAGCATCTATACTCAAATTC+AGG | + | chr1_3:1199360-1199379 | None:intergenic | 30.0% | |
| GCTCATTTAATTACCATGTA+AGG | - | chr1_3:1199412-1199431 | Msa0095840:intron | 30.0% | |
| ! | ATCAAGTTGCATGTAGATTA+AGG | + | chr1_3:1199477-1199496 | None:intergenic | 30.0% |
| ACAGTAAATCTAACCATGAA+CGG | + | chr1_3:1199516-1199535 | None:intergenic | 30.0% | |
| !! | CTTTATATTTTGAACCGAAC+TGG | - | chr1_3:1199614-1199633 | Msa0095840:CDS | 30.0% |
| TCTGTATAAGAAAACCAGTT+CGG | + | chr1_3:1199631-1199650 | None:intergenic | 30.0% | |
| GTGTTTCTTAATCAGTTACA+GGG | + | chr1_3:1199876-1199895 | None:intergenic | 30.0% | |
| TGTGTTTCTTAATCAGTTAC+AGG | + | chr1_3:1199877-1199896 | None:intergenic | 30.0% | |
| ATTCAGCAAAGAAGTTGAAT+TGG | - | chr1_3:1199896-1199915 | Msa0095840:intron | 30.0% | |
| !!! | GGTTAACACCATTTTTTTTG+GGG | - | chr1_3:1199953-1199972 | Msa0095840:intron | 30.0% |
| ATTAGACTATAAGTTGTGAG+AGG | - | chr1_3:1200538-1200557 | Msa0095840:CDS | 30.0% | |
| GTATTTGCTTTATCTGTCTA+CGG | - | chr1_3:1200578-1200597 | Msa0095840:intron | 30.0% | |
| TATTTGCTTTATCTGTCTAC+GGG | - | chr1_3:1200579-1200598 | Msa0095840:intron | 30.0% | |
| AATTCATATTATCACCGAGA+GGG | + | chr1_3:1200714-1200733 | None:intergenic | 30.0% | |
| AAATTCATATTATCACCGAG+AGG | + | chr1_3:1200715-1200734 | None:intergenic | 30.0% | |
| ! | ATAAAATGCTTTTGACCTTC+TGG | + | chr1_3:1200766-1200785 | None:intergenic | 30.0% |
| ! | TGGATGGTATTTTCAATTGA+AGG | - | chr1_3:1200793-1200812 | Msa0095840:CDS | 30.0% |
| GTCTTTAAATCTACTATAGC+AGG | + | chr1_3:1200836-1200855 | None:intergenic | 30.0% | |
| TGTCTTTGACATTTCTTTCT+TGG | - | chr1_3:1201154-1201173 | Msa0095840:intron | 30.0% | |
| GTCTTTGACATTTCTTTCTT+GGG | - | chr1_3:1201155-1201174 | Msa0095840:intron | 30.0% | |
| ! | TGACGTTAATAAATTTGCTC+CGG | + | chr1_3:1201264-1201283 | None:intergenic | 30.0% |
| AGCAAATTTATTAACGTCAG+TGG | - | chr1_3:1201265-1201284 | Msa0095840:intron | 30.0% | |
| GCAAATTTATTAACGTCAGT+GGG | - | chr1_3:1201266-1201285 | Msa0095840:intron | 30.0% | |
| CTACAGTAAAAGAATGACAA+AGG | + | chr1_3:1201426-1201445 | None:intergenic | 30.0% | |
| GATTAGACAGCAAAATATTC+CGG | + | chr1_3:1201627-1201646 | None:intergenic | 30.0% | |
| GCATAAGTTTGTCATAAACA+AGG | + | chr1_3:1201878-1201897 | None:intergenic | 30.0% | |
| ! | CTATTTTCTTATGTAGGTAG+AGG | - | chr1_3:1202098-1202117 | Msa0095840:intron | 30.0% |
| !!! | ACTTCAGTTGCTTTTTCAAA+TGG | - | chr1_3:1202194-1202213 | Msa0095840:intron | 30.0% |
| ! | GATTGTTTTCTCTCGTTATA+AGG | - | chr1_3:1202233-1202252 | Msa0095840:intron | 30.0% |
| ! | CTTCTTTTGGTAAATGACAA+TGG | - | chr1_3:1202451-1202470 | Msa0095840:CDS | 30.0% |
| TTGTTATGAAAGATCTGCTT+TGG | - | chr1_3:1202687-1202706 | Msa0095840:intron | 30.0% | |
| CATGAAAATTGCAACAACTA+TGG | + | chr1_3:1202767-1202786 | None:intergenic | 30.0% | |
| AATTGGATTACAAAGGCTAT+AGG | - | chr1_3:1202933-1202952 | Msa0095840:intron | 30.0% | |
| CATCAGTACATTCTGTTAAA+TGG | - | chr1_3:1202958-1202977 | Msa0095840:intron | 30.0% | |
| AGTTCGCATTTCCATTATAT+AGG | + | chr1_3:1203041-1203060 | None:intergenic | 30.0% | |
| ATAAAGTATAAACATGTGGC+TGG | - | chr1_3:1203097-1203116 | Msa0095840:intron | 30.0% | |
| TAAAGTATAAACATGTGGCT+GGG | - | chr1_3:1203098-1203117 | Msa0095840:intron | 30.0% | |
| AATTGGATTACAAAAGCTAC+AGG | - | chr1_3:1203167-1203186 | Msa0095840:intron | 30.0% | |
| ! | CATTTAATATTGGTAGCTGA+AGG | + | chr1_3:1203349-1203368 | None:intergenic | 30.0% |
| TTCAACATATGAGAAATGCT+AGG | - | chr1_3:1203370-1203389 | Msa0095840:intron | 30.0% | |
| ATAAGAGAGTGAGTGTTAAA+AGG | + | chr1_3:1203402-1203421 | None:intergenic | 30.0% | |
| TTTAACACTCACTCTCTTAT+TGG | - | chr1_3:1203402-1203421 | Msa0095840:intron | 30.0% | |
| CTAACACTCATTCTCTTATT+GGG | + | chr1_3:1203497-1203516 | None:intergenic | 30.0% | |
| TCTAACACTCATTCTCTTAT+TGG | + | chr1_3:1203498-1203517 | None:intergenic | 30.0% | |
| !! | AAAGATTTTGATCCTGATTG+TGG | - | chr1_3:1203915-1203934 | Msa0095840:five_prime_UTR | 30.0% |
| AAACGCGTTTCGATCAAAAA+TGG | + | chr1_3:1197811-1197830 | None:intergenic | 35.0% | |
| ! | TTTTCTTTTTCCCTTTTCGG+AGG | - | chr1_3:1197892-1197911 | Msa0095840:intron | 35.0% |
| ! | TTTCTTTTTCCCTTTTCGGA+GGG | - | chr1_3:1197893-1197912 | Msa0095840:intron | 35.0% |
| ! | TCGAATGAGAGAGTTTTTGA+AGG | - | chr1_3:1197959-1197978 | Msa0095840:intron | 35.0% |
| AAGGATCTGAACGATGAAAT+GGG | - | chr1_3:1197978-1197997 | Msa0095840:intron | 35.0% | |
| GTGATGATTTCAGTATGCAT+TGG | - | chr1_3:1198265-1198284 | Msa0095840:intron | 35.0% | |
| TCGTTAACTAAACCTTAGCT+TGG | + | chr1_3:1198445-1198464 | None:intergenic | 35.0% | |
| AGGTTTAGTTAACGAAATGG+TGG | - | chr1_3:1198450-1198469 | Msa0095840:intron | 35.0% | |
| ! | TTTTTATGGTGTGCACTTTG+CGG | - | chr1_3:1198536-1198555 | Msa0095840:intron | 35.0% |
| ! | ATGGTAGTTACATTCCGTTT+TGG | - | chr1_3:1198745-1198764 | Msa0095840:intron | 35.0% |
| !!! | AGGAATCGGGTTTTGAATTT+TGG | - | chr1_3:1198860-1198879 | Msa0095840:intron | 35.0% |
| TATGCATGTTCACTGATGAA+TGG | + | chr1_3:1199004-1199023 | None:intergenic | 35.0% | |
| AACTTGAGATAAGATGGACA+AGG | + | chr1_3:1199135-1199154 | None:intergenic | 35.0% | |
| !! | AGAGATTTTGGGAAGAGTTT+CGG | - | chr1_3:1199201-1199220 | Msa0095840:intron | 35.0% |
| ! | GCTTAATCTCATTTTGTTGC+AGG | - | chr1_3:1199321-1199340 | Msa0095840:intron | 35.0% |
| TTTGTTGCAGGAAAAAGAAG+CGG | - | chr1_3:1199333-1199352 | Msa0095840:intron | 35.0% | |
| GGAGAAATTGTTTCCTTACA+TGG | + | chr1_3:1199428-1199447 | None:intergenic | 35.0% | |
| ACAGAAATGCAATGAAGCTA+AGG | + | chr1_3:1199449-1199468 | None:intergenic | 35.0% | |
| CAGTAAATCTAACCATGAAC+GGG | + | chr1_3:1199515-1199534 | None:intergenic | 35.0% | |
| ACTGAACCGAAGAACTAATT+CGG | + | chr1_3:1199586-1199605 | None:intergenic | 35.0% | |
| TTCTCACAACCTACTTATGT+TGG | - | chr1_3:1199661-1199680 | Msa0095840:CDS | 35.0% | |
| GGGTTTATCCCCAAAAAAAA+TGG | + | chr1_3:1199964-1199983 | None:intergenic | 35.0% | |
| ! | TAGTAAACACGTTTTGCCTT+TGG | + | chr1_3:1199991-1200010 | None:intergenic | 35.0% |
| GTTAGTGAATTGCGTGTAAA+AGG | - | chr1_3:1200381-1200400 | Msa0095840:intron | 35.0% | |
| CTTTACAGATAGGTTCAGAT+CGG | - | chr1_3:1200441-1200460 | Msa0095840:intron | 35.0% | |
| GTTTAATTGAACAGTCCTAG+CGG | - | chr1_3:1200489-1200508 | Msa0095840:intron | 35.0% | |
| ATTTGCTTTATCTGTCTACG+GGG | - | chr1_3:1200580-1200599 | Msa0095840:intron | 35.0% | |
| !! | ATCTGTCTTGTTGTTTCACT+TGG | - | chr1_3:1200624-1200643 | Msa0095840:intron | 35.0% |
| AATGTTATCCATGTTGGCAT+TGG | - | chr1_3:1200952-1200971 | Msa0095840:intron | 35.0% | |
| CAGCAGTAAAACAAGATCTT+TGG | - | chr1_3:1201087-1201106 | Msa0095840:intron | 35.0% | |
| !!! | GTTTTTCTCTGAAGTCACAA+AGG | - | chr1_3:1201129-1201148 | Msa0095840:intron | 35.0% |
| ! | GACGTTAATAAATTTGCTCC+GGG | + | chr1_3:1201263-1201282 | None:intergenic | 35.0% |
| ! | ACTGTGTGTTGTTCCTAATA+CGG | + | chr1_3:1201340-1201359 | None:intergenic | 35.0% |
| AACAAACAACAGATGTCAGA+TGG | + | chr1_3:1201370-1201389 | None:intergenic | 35.0% | |
| ! | GACATCTGTTGTTTGTTTGA+TGG | - | chr1_3:1201373-1201392 | Msa0095840:intron | 35.0% |
| AGTAGAGATTGCTTGTCAAT+AGG | + | chr1_3:1201599-1201618 | None:intergenic | 35.0% | |
| ATCCTGATGTAACCATTCAA+AGG | - | chr1_3:1201669-1201688 | Msa0095840:intron | 35.0% | |
| CACAAGGTACATATATCATG+AGG | + | chr1_3:1201789-1201808 | None:intergenic | 35.0% | |
| AAACACGAAAGAGATACACA+AGG | + | chr1_3:1201805-1201824 | None:intergenic | 35.0% | |
| !! | TTTCGTGTTTTTGCACATGT+TGG | - | chr1_3:1201815-1201834 | Msa0095840:intron | 35.0% |
| ! | ATGGTTTTCTTCTATGGTGA+GGG | + | chr1_3:1201998-1202017 | None:intergenic | 35.0% |
| ! | TATGGTTTTCTTCTATGGTG+AGG | + | chr1_3:1201999-1202018 | None:intergenic | 35.0% |
| GTATATAACTGGGATAATCC+AGG | - | chr1_3:1202039-1202058 | Msa0095840:intron | 35.0% | |
| AAAAATGTACAAATGGGACC+TGG | + | chr1_3:1202060-1202079 | None:intergenic | 35.0% | |
| !!! | CTTTTTCAAATGGTTGCCAA+GGG | - | chr1_3:1202204-1202223 | Msa0095840:intron | 35.0% |
| !! | TTTTTCAAATGGTTGCCAAG+GGG | - | chr1_3:1202205-1202224 | Msa0095840:intron | 35.0% |
| ! | GTTTTCTCTCGTTATAAGGA+AGG | - | chr1_3:1202237-1202256 | Msa0095840:intron | 35.0% |
| ! | ACATTAAACACCAGAAGCAT+AGG | + | chr1_3:1202393-1202412 | None:intergenic | 35.0% |
| ! | TTAGATACTCGGTCTTCTTT+TGG | - | chr1_3:1202438-1202457 | Msa0095840:CDS | 35.0% |
| TTGAAAGTCAATGACATACC+AGG | + | chr1_3:1202506-1202525 | None:intergenic | 35.0% | |
| !! | TGTAGTTTGTGTTCAGCTTT+TGG | - | chr1_3:1202586-1202605 | Msa0095840:intron | 35.0% |
| !!! | CACTGGCTTTCACTTAATTT+TGG | + | chr1_3:1202737-1202756 | None:intergenic | 35.0% |
| ATGTGAACTTGCAAAGCTTT+AGG | - | chr1_3:1202820-1202839 | Msa0095840:intron | 35.0% | |
| TGTGAACTTGCAAAGCTTTA+GGG | - | chr1_3:1202821-1202840 | Msa0095840:intron | 35.0% | |
| ATGAAGTATAAACATGTGGC+TGG | - | chr1_3:1202865-1202884 | Msa0095840:intron | 35.0% | |
| TGAAGTATAAACATGTGGCT+GGG | - | chr1_3:1202866-1202885 | Msa0095840:intron | 35.0% | |
| ! | ATTGCCTTGTCTTTTCATTG+AGG | + | chr1_3:1203015-1203034 | None:intergenic | 35.0% |
| AAGGCAATCAGCCTATATAA+TGG | - | chr1_3:1203027-1203046 | Msa0095840:intron | 35.0% | |
| ! | ATGCGAACTTGCAAAGTTTT+AGG | - | chr1_3:1203052-1203071 | Msa0095840:intron | 35.0% |
| ! | TGCGAACTTGCAAAGTTTTA+GGG | - | chr1_3:1203053-1203072 | Msa0095840:intron | 35.0% |
| AAAGTATAAACATGTGGCTG+GGG | - | chr1_3:1203099-1203118 | Msa0095840:intron | 35.0% | |
| CACTCTTCAAAGAAAAGACA+AGG | - | chr1_3:1203242-1203261 | Msa0095840:intron | 35.0% | |
| TCTTATTGGATGAAACACGT+GGG | - | chr1_3:1203416-1203435 | Msa0095840:intron | 35.0% | |
| TTATTGGGTGAAACTCATGT+GGG | + | chr1_3:1203482-1203501 | None:intergenic | 35.0% | |
| ATGAACCTCTATGAGTTGTA+GGG | + | chr1_3:1203661-1203680 | None:intergenic | 35.0% | |
| AATGAACCTCTATGAGTTGT+AGG | + | chr1_3:1203662-1203681 | None:intergenic | 35.0% | |
| CATCTAATATGATCAGTAGG+TGG | + | chr1_3:1203735-1203754 | None:intergenic | 35.0% | |
| CACCTACTGATCATATTAGA+TGG | - | chr1_3:1203733-1203752 | Msa0095840:CDS | 35.0% | |
| CACCATCTAATATGATCAGT+AGG | + | chr1_3:1203738-1203757 | None:intergenic | 35.0% | |
| GATCATATTAGATGGTGTAC+AGG | - | chr1_3:1203741-1203760 | Msa0095840:CDS | 35.0% | |
| ! | ATTGAGCAAAGGTGCATTAA+GGG | + | chr1_3:1203867-1203886 | None:intergenic | 35.0% |
| ! | CTTTTATCTGCATTGAGCAA+AGG | + | chr1_3:1203878-1203897 | None:intergenic | 35.0% |
| TAACAAGTCAACAATGCCTA+CGG | + | chr1_3:1203955-1203974 | None:intergenic | 35.0% | |
| GTTGAATTGTCATATAGAGC+TGG | - | chr1_3:1203984-1204003 | Msa0095840:five_prime_UTR | 35.0% | |
| ! | TTCCTTTTTCCCATTAATGC+TGG | - | chr1_3:1204067-1204086 | Msa0095840:five_prime_UTR | 35.0% |
| GAAGGATCTGAACGATGAAA+TGG | - | chr1_3:1197977-1197996 | Msa0095840:intron | 40.0% | |
| TTGATGTTATCACCACGAGA+AGG | + | chr1_3:1198102-1198121 | None:intergenic | 40.0% | |
| AGCAAATCGGAAACTAGCAA+AGG | + | chr1_3:1198410-1198429 | None:intergenic | 40.0% | |
| AACAAGGCACAGTTCCAAAA+CGG | + | chr1_3:1198762-1198781 | None:intergenic | 40.0% | |
| TTTATGACGCCATAATGGTC+AGG | - | chr1_3:1198917-1198936 | Msa0095840:intron | 40.0% | |
| !! | TTATTTTGTCGCAACATGGC+AGG | - | chr1_3:1199037-1199056 | Msa0095840:intron | 40.0% |
| ATTGTAGAAATGCCTTGCCT+TGG | - | chr1_3:1199068-1199087 | Msa0095840:intron | 40.0% | |
| CCAAACAATAAACCAAGGCA+AGG | + | chr1_3:1199083-1199102 | None:intergenic | 40.0% | |
| CCTTGCCTTGGTTTATTGTT+TGG | - | chr1_3:1199080-1199099 | Msa0095840:intron | 40.0% | |
| TTGTAGATTAGTAAGGCAGC+AGG | - | chr1_3:1199381-1199400 | Msa0095840:intron | 40.0% | |
| ! | AGGGAACCGAATTAGTTCTT+CGG | - | chr1_3:1199577-1199596 | Msa0095840:CDS | 40.0% |
| CTAAATTAGCCCACCCAAAT+TGG | + | chr1_3:1199757-1199776 | None:intergenic | 40.0% | |
| !! | CACGTTTTGCCTTTGGTTTA+GGG | + | chr1_3:1199984-1200003 | None:intergenic | 40.0% |
| !! | ACACGTTTTGCCTTTGGTTT+AGG | + | chr1_3:1199985-1200004 | None:intergenic | 40.0% |
| AACATTGACCAACATAACCG+AGG | - | chr1_3:1200138-1200157 | Msa0095840:CDS | 40.0% | |
| ATACTTTGCCTCGGTTATGT+TGG | + | chr1_3:1200149-1200168 | None:intergenic | 40.0% | |
| ACATAACCGAGGCAAAGTAT+TGG | - | chr1_3:1200149-1200168 | Msa0095840:CDS | 40.0% | |
| GAATACATGTTGAGCGATGT+AGG | - | chr1_3:1200197-1200216 | Msa0095840:CDS | 40.0% | |
| TGAATTGCGTGTAAAAGGCT+AGG | - | chr1_3:1200386-1200405 | Msa0095840:intron | 40.0% | |
| GCGAAGTTGTGCACTTAAAT+TGG | - | chr1_3:1200685-1200704 | Msa0095840:intron | 40.0% | |
| ACTTAAATTGGAAGCCCTCT+CGG | - | chr1_3:1200697-1200716 | Msa0095840:CDS | 40.0% | |
| ! | TCTGTGGTTGATGCACTTTA+TGG | - | chr1_3:1200739-1200758 | Msa0095840:CDS | 40.0% |
| ! | CTGTGGTTGATGCACTTTAT+GGG | - | chr1_3:1200740-1200759 | Msa0095840:CDS | 40.0% |
| TGATAGATACTCTTCTGTGC+AGG | - | chr1_3:1201226-1201245 | Msa0095840:intron | 40.0% | |
| TTGTTCCTAATACGGTGACT+TGG | + | chr1_3:1201332-1201351 | None:intergenic | 40.0% | |
| TGTTTAGTGTGGTAACTGCT+TGG | - | chr1_3:1201468-1201487 | Msa0095840:intron | 40.0% | |
| GTTTAGTGTGGTAACTGCTT+GGG | - | chr1_3:1201469-1201488 | Msa0095840:intron | 40.0% | |
| TTTAGTGTGGTAACTGCTTG+GGG | - | chr1_3:1201470-1201489 | Msa0095840:intron | 40.0% | |
| GTTGCTGTATAACCATTGGA+TGG | - | chr1_3:1201492-1201511 | Msa0095840:intron | 40.0% | |
| GGTTACATCAGGATCAAGAA+GGG | + | chr1_3:1201663-1201682 | None:intergenic | 40.0% | |
| TGGTTACATCAGGATCAAGA+AGG | + | chr1_3:1201664-1201683 | None:intergenic | 40.0% | |
| ! | AGCACTATTTGGCCTTTGAA+TGG | + | chr1_3:1201684-1201703 | None:intergenic | 40.0% |
| !! | GTGTTTTTGCACATGTTGGA+TGG | - | chr1_3:1201819-1201838 | Msa0095840:intron | 40.0% |
| AACTTATGCTTGACAAGTCG+TGG | - | chr1_3:1201889-1201908 | Msa0095840:intron | 40.0% | |
| TTTCTTCTATGGTGAGGGTT+TGG | + | chr1_3:1201993-1202012 | None:intergenic | 40.0% | |
| !!! | GCTTTTTCAAATGGTTGCCA+AGG | - | chr1_3:1202203-1202222 | Msa0095840:intron | 40.0% |
| GAAAACAATCAAAGACCCCT+TGG | + | chr1_3:1202223-1202242 | None:intergenic | 40.0% | |
| TGAAGTTGTATGCTGTGCAA+TGG | + | chr1_3:1202270-1202289 | None:intergenic | 40.0% | |
| ACTTCATAGACATGCTATGC+AGG | - | chr1_3:1202284-1202303 | Msa0095840:intron | 40.0% | |
| ACATGCTATGCAGGTAAAGT+GGG | - | chr1_3:1202293-1202312 | Msa0095840:intron | 40.0% | |
| GAAGTATAAACATGTGGCTG+GGG | - | chr1_3:1202867-1202886 | Msa0095840:intron | 40.0% | |
| !!! | GGTGCTTACTATTTTGGCTT+GGG | - | chr1_3:1202888-1202907 | Msa0095840:intron | 40.0% |
| CACTCCTCAATGAAAAGACA+AGG | - | chr1_3:1203008-1203027 | Msa0095840:intron | 40.0% | |
| !!! | GGTGCTTACTATTTTGGGTT+GGG | - | chr1_3:1203120-1203139 | Msa0095840:intron | 40.0% |
| !!! | GTGCTTACTATTTTGGGTTG+GGG | - | chr1_3:1203121-1203140 | Msa0095840:intron | 40.0% |
| GACCAGATTAGAACTTGTAC+AGG | - | chr1_3:1203319-1203338 | Msa0095840:intron | 40.0% | |
| ! | TGCCTGTACAAGTTCTAATC+TGG | + | chr1_3:1203324-1203343 | None:intergenic | 40.0% |
| CTCTTATTGGATGAAACACG+TGG | - | chr1_3:1203415-1203434 | Msa0095840:intron | 40.0% | |
| TGGGTTTCACCACTTTATGT+GGG | - | chr1_3:1203435-1203454 | Msa0095840:intron | 40.0% | |
| GAAATGGATCCCACATAAAG+TGG | + | chr1_3:1203447-1203466 | None:intergenic | 40.0% | |
| CTTATTGGGTGAAACTCATG+TGG | + | chr1_3:1203483-1203502 | None:intergenic | 40.0% | |
| !! | TATGTTGAAGAGGAGTGCTA+TGG | + | chr1_3:1203541-1203560 | None:intergenic | 40.0% |
| TACTACCCTACAACTCATAG+AGG | - | chr1_3:1203653-1203672 | Msa0095840:intron | 40.0% | |
| ACTGCTCTTATCATTGCTGT+CGG | - | chr1_3:1203786-1203805 | Msa0095840:CDS | 40.0% | |
| ! | CATTGAGCAAAGGTGCATTA+AGG | + | chr1_3:1203868-1203887 | None:intergenic | 40.0% |
| TAAGCAGAATCTCCACAATC+AGG | + | chr1_3:1203930-1203949 | None:intergenic | 40.0% | |
| AGCCAGCATTAATGGGAAAA+AGG | + | chr1_3:1204072-1204091 | None:intergenic | 40.0% | |
| CAGAACTAGCCAGCATTAAT+GGG | + | chr1_3:1204079-1204098 | None:intergenic | 40.0% | |
| TCAGAACTAGCCAGCATTAA+TGG | + | chr1_3:1204080-1204099 | None:intergenic | 40.0% | |
| GCTCTTCTTCATCTCCTAAC+AGG | - | chr1_3:1198151-1198170 | Msa0095840:intron | 45.0% | |
| TCTCGCCAGTTGGTTGAATT+TGG | - | chr1_3:1198478-1198497 | Msa0095840:intron | 45.0% | |
| GCACTCCAAATTCAACCAAC+TGG | + | chr1_3:1198486-1198505 | None:intergenic | 45.0% | |
| GTAGGTCATCTTTGCGTCAT+GGG | - | chr1_3:1198826-1198845 | Msa0095840:intron | 45.0% | |
| GATAAGAACCTTCTCAGAGC+TGG | + | chr1_3:1199231-1199250 | None:intergenic | 45.0% | |
| TGTGAATGTATGCCCGTTCA+TGG | - | chr1_3:1199500-1199519 | Msa0095840:intron | 45.0% | |
| ! | ACCTACTTATGTTGGCCTGA+TGG | - | chr1_3:1199669-1199688 | Msa0095840:CDS | 45.0% |
| ACCATCAGGCCAACATAAGT+AGG | + | chr1_3:1199673-1199692 | None:intergenic | 45.0% | |
| ! | TTATGTTGGCCTGATGGTGT+TGG | - | chr1_3:1199675-1199694 | Msa0095840:CDS | 45.0% |
| GAATCGAACTTGAGACCTTG+AGG | + | chr1_3:1199725-1199744 | None:intergenic | 45.0% | |
| GGGGATAAACCCTAAACCAA+AGG | - | chr1_3:1199972-1199991 | Msa0095840:intron | 45.0% | |
| !! | ACCGAGGCAAAGTATTGGAT+CGG | - | chr1_3:1200154-1200173 | Msa0095840:CDS | 45.0% |
| TGTTGAGCGATGTAGGAACA+AGG | - | chr1_3:1200204-1200223 | Msa0095840:CDS | 45.0% | |
| TCAATACGCTTTGTGCTTCC+TGG | + | chr1_3:1200230-1200249 | None:intergenic | 45.0% | |
| ! | AGGAAGCACAAAGCGTATTG+AGG | - | chr1_3:1200229-1200248 | Msa0095840:intron | 45.0% |
| AGCAAACACCAATGCCAACA+TGG | + | chr1_3:1200963-1200982 | None:intergenic | 45.0% | |
| TCAGTGGGAATCCTTGTATC+TGG | - | chr1_3:1201281-1201300 | Msa0095840:intron | 45.0% | |
| CAGTGGGAATCCTTGTATCT+GGG | - | chr1_3:1201282-1201301 | Msa0095840:intron | 45.0% | |
| AGTGGGAATCCTTGTATCTG+GGG | - | chr1_3:1201283-1201302 | Msa0095840:intron | 45.0% | |
| ! | AGAAGCATACCCCAGATACA+AGG | + | chr1_3:1201295-1201314 | None:intergenic | 45.0% |
| TAGTGCCAAGTCACCGTATT+AGG | - | chr1_3:1201324-1201343 | Msa0095840:intron | 45.0% | |
| TGGGGTTGCTGTATAACCAT+TGG | - | chr1_3:1201488-1201507 | Msa0095840:intron | 45.0% | |
| AAGCAATCTCTACTCGACTC+CGG | - | chr1_3:1201605-1201624 | Msa0095840:intron | 45.0% | |
| !! | CAAGAAGGGCATTGAGAACA+TGG | + | chr1_3:1201649-1201668 | None:intergenic | 45.0% |
| GGCCTTTGAATGGTTACATC+AGG | + | chr1_3:1201674-1201693 | None:intergenic | 45.0% | |
| !! | ATGTTGGTGTTGGGCAAAAC+CGG | - | chr1_3:1201744-1201763 | Msa0095840:intron | 45.0% |
| ATCAAACTCTGAGCTGCTGA+TGG | + | chr1_3:1202162-1202181 | None:intergenic | 45.0% | |
| AGCAGCTCAGAGTTTGATAG+AGG | - | chr1_3:1202164-1202183 | Msa0095840:intron | 45.0% | |
| GACATGCTATGCAGGTAAAG+TGG | - | chr1_3:1202292-1202311 | Msa0095840:intron | 45.0% | |
| CATGCTATGCAGGTAAAGTG+GGG | - | chr1_3:1202294-1202313 | Msa0095840:intron | 45.0% | |
| TTGAGCTGATCCTATGCTTC+TGG | - | chr1_3:1202380-1202399 | Msa0095840:intron | 45.0% | |
| ! | ACAACTATGGCTTTGCACAC+TGG | + | chr1_3:1202754-1202773 | None:intergenic | 45.0% |
| !!! | GGGTGCTTACTATTTTGGCT+TGG | - | chr1_3:1202887-1202906 | Msa0095840:intron | 45.0% |
| !!! | GCAAAGTTTTAGGGAAGTGC+AGG | - | chr1_3:1203062-1203081 | Msa0095840:intron | 45.0% |
| !! | GCTGGGGTGCTTACTATTTT+GGG | - | chr1_3:1202883-1202902 | Msa0095840:intron | 45.0% |
| !! | GGGTGCTTACTATTTTGGGT+TGG | - | chr1_3:1203119-1203138 | Msa0095840:intron | 45.0% |
| GTGGGTTTCACCACTTTATG+TGG | - | chr1_3:1203434-1203453 | Msa0095840:intron | 45.0% | |
| ! | TGGGTCTCACACTTTGGAAA+TGG | + | chr1_3:1203463-1203482 | None:intergenic | 45.0% |
| GGAGATTCTGCTTATACCGT+AGG | - | chr1_3:1203936-1203955 | Msa0095840:five_prime_UTR | 45.0% | |
| !! | AAAAAATTAAAAAAAATTCT+CGG | - | chr1_3:1197726-1197745 | Msa0095840:intron | 5.0% |
| ! | CTTTTTCCCTTTTCGGAGGG+AGG | - | chr1_3:1197896-1197915 | Msa0095840:intron | 50.0% |
| GGAAGGGAAATCGTTGGATC+TGG | - | chr1_3:1197917-1197936 | Msa0095840:intron | 50.0% | |
| GCAGCAGAAGTAGAAGCAGA+CGG | + | chr1_3:1198072-1198091 | None:intergenic | 50.0% | |
| GCTTTGCGAAGCTGAGAAGA+AGG | + | chr1_3:1198133-1198152 | None:intergenic | 50.0% | |
| GGTGGAAAAATCTCGCCAGT+TGG | - | chr1_3:1198468-1198487 | Msa0095840:intron | 50.0% | |
| ! | GTTATGGAAGCGCAACTGCA+AGG | - | chr1_3:1198804-1198823 | Msa0095840:intron | 50.0% |
| GGTAGGTCATCTTTGCGTCA+TGG | - | chr1_3:1198825-1198844 | Msa0095840:intron | 50.0% | |
| GGGTGCGTCAATCAAGGAAT+CGG | - | chr1_3:1198846-1198865 | Msa0095840:intron | 50.0% | |
| GGTGCGTCAATCAAGGAATC+GGG | - | chr1_3:1198847-1198866 | Msa0095840:intron | 50.0% | |
| TCGCAACATGGCAGGATTGA+CGG | - | chr1_3:1199045-1199064 | Msa0095840:intron | 50.0% | |
| AATCAGGGACAGACATGAGC+TGG | - | chr1_3:1199166-1199185 | Msa0095840:intron | 50.0% | |
| GGACAGACATGAGCTGGAAT+TGG | - | chr1_3:1199172-1199191 | Msa0095840:intron | 50.0% | |
| TGTCTGTCCTGCACTGCTTA+AGG | - | chr1_3:1199281-1199300 | Msa0095840:intron | 50.0% | |
| GTCTGTCCTGCACTGCTTAA+GGG | - | chr1_3:1199282-1199301 | Msa0095840:intron | 50.0% | |
| CCTAATCCCTTAAGCAGTGC+AGG | + | chr1_3:1199291-1199310 | None:intergenic | 50.0% | |
| CCTGCACTGCTTAAGGGATT+AGG | - | chr1_3:1199288-1199307 | Msa0095840:intron | 50.0% | |
| TCGAACTTGAGACCTTGAGG+AGG | + | chr1_3:1199722-1199741 | None:intergenic | 50.0% | |
| GTCTCAAGTTCGATTCTCCC+CGG | - | chr1_3:1199729-1199748 | Msa0095840:intron | 50.0% | |
| ! | ATTCTCCCCGGTGCCAATTT+GGG | - | chr1_3:1199741-1199760 | Msa0095840:intron | 50.0% |
| GCCGATCCAATACTTTGCCT+CGG | + | chr1_3:1200158-1200177 | None:intergenic | 50.0% | |
| GATGCACTTTATGGGCCAGA+AGG | - | chr1_3:1200748-1200767 | Msa0095840:CDS | 50.0% | |
| AACTCTGAGCTGCTGATGGA+TGG | + | chr1_3:1202158-1202177 | None:intergenic | 50.0% | |
| GGAGATGCTTGCGGATGTAT+TGG | + | chr1_3:1202485-1202504 | None:intergenic | 50.0% | |
| ATACATCCGCAAGCATCTCC+TGG | - | chr1_3:1202485-1202504 | Msa0095840:intron | 50.0% | |
| GACATACCAGGAGATGCTTG+CGG | + | chr1_3:1202494-1202513 | None:intergenic | 50.0% | |
| GGGCGAGTTTGTGTGATTCT+AGG | - | chr1_3:1202655-1202674 | Msa0095840:intron | 50.0% | |
| !! | GCAAAGCTTTAGGGAAGTGC+AGG | - | chr1_3:1202830-1202849 | Msa0095840:intron | 50.0% |
| !! | GGCTGGGGTGCTTACTATTT+TGG | - | chr1_3:1202882-1202901 | Msa0095840:intron | 50.0% |
| !! | GGCTGGGGTGCTTACTATTT+TGG | - | chr1_3:1202882-1202901 | Msa0095840:intron | 50.0% |
| CTCATGTGGGTCTCACACTT+TGG | + | chr1_3:1203469-1203488 | None:intergenic | 50.0% | |
| ! | TTCCCTTTTCGGAGGGAGGA+AGG | - | chr1_3:1197900-1197919 | Msa0095840:intron | 55.0% |
| ! | TCCCTTTTCGGAGGGAGGAA+GGG | - | chr1_3:1197901-1197920 | Msa0095840:intron | 55.0% |
| TCCCTTCCTCCCTCCGAAAA+GGG | + | chr1_3:1197905-1197924 | None:intergenic | 55.0% | |
| TTCCCTTCCTCCCTCCGAAA+AGG | + | chr1_3:1197906-1197925 | None:intergenic | 55.0% | |
| GAGGGAGGAAGGGAAATCGT+TGG | - | chr1_3:1197911-1197930 | Msa0095840:intron | 55.0% | |
| GCAGAAGTAGAAGCAGACGG+TGG | + | chr1_3:1198069-1198088 | None:intergenic | 55.0% | |
| !! | GCTGCTGTTTCTCCTTCTCG+TGG | - | chr1_3:1198087-1198106 | Msa0095840:intron | 55.0% |
| ! | TGGAAGCGCAACTGCAAGGT+AGG | - | chr1_3:1198808-1198827 | Msa0095840:intron | 55.0% |
| CGTCATGGGTGCGTCAATCA+AGG | - | chr1_3:1198840-1198859 | Msa0095840:intron | 55.0% | |
| !! | TCGGTCATCCAGCTCTGAGA+AGG | - | chr1_3:1199220-1199239 | Msa0095840:intron | 55.0% |
| !! | TTGGCCTGATGGTGTTGGCT+TGG | - | chr1_3:1199680-1199699 | Msa0095840:CDS | 55.0% |
| !! | TGGCCTGATGGTGTTGGCTT+GGG | - | chr1_3:1199681-1199700 | Msa0095840:CDS | 55.0% |
| !! | ATGGTGTTGGCTTGGGACCT+TGG | - | chr1_3:1199688-1199707 | Msa0095840:CDS | 55.0% |
| ! | TTGAGGAGGAGCACACTCCA+AGG | + | chr1_3:1199708-1199727 | None:intergenic | 55.0% |
| TTGGAGTGTGCTCCTCCTCA+AGG | - | chr1_3:1199707-1199726 | Msa0095840:intron | 55.0% | |
| ! | GATTCTCCCCGGTGCCAATT+TGG | - | chr1_3:1199740-1199759 | Msa0095840:intron | 55.0% |
| TAGCCCACCCAAATTGGCAC+CGG | + | chr1_3:1199751-1199770 | None:intergenic | 55.0% | |
| AGCGATGTAGGAACAAGGCC+AGG | - | chr1_3:1200209-1200228 | Msa0095840:CDS | 55.0% | |
| GTGCAGGATGACATCAGTCC+CGG | - | chr1_3:1201242-1201261 | Msa0095840:intron | 55.0% | |
| !! | TTGGTGTTGGGCAAAACCGG+CGG | - | chr1_3:1201747-1201766 | Msa0095840:intron | 55.0% |
| AGAAAGAAACCTCGAGCCGC+CGG | + | chr1_3:1201766-1201785 | None:intergenic | 55.0% | |
| AGACGGTGGTTGCGACGAAG+CGG | + | chr1_3:1198055-1198074 | None:intergenic | 60.0% | |
| GGTCCCAAGCCAACACCATC+AGG | + | chr1_3:1199687-1199706 | None:intergenic | 60.0% | |
| ! | TCCCCGGTGCCAATTTGGGT+GGG | - | chr1_3:1199745-1199764 | Msa0095840:intron | 60.0% |
| AGCCCACCCAAATTGGCACC+GGG | + | chr1_3:1199750-1199769 | None:intergenic | 60.0% | |
| ! | CTCCCCGGTGCCAATTTGGG+TGG | - | chr1_3:1199744-1199763 | Msa0095840:intron | 65.0% |
| GCCCACCCAAATTGGCACCG+GGG | + | chr1_3:1199749-1199768 | None:intergenic | 65.0% | |
| TGGGCAAAACCGGCGGCTCG+AGG | - | chr1_3:1201754-1201773 | Msa0095840:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 1197710 | 1204126 | 1197710 | ID=Msa0095840;Name=Msa0095840 |
| chr1_3 | mRNA | 1197710 | 1204126 | 1197710 | ID=Msa0095840-mRNA-1;Parent=Msa0095840;Name=Msa0095840-mRNA-1;_AED=0.07;_eAED=0.07;_QI=281|0.75|0.66|0.77|1|0.88|9|0|305 |
| chr1_3 | exon | 1197710 | 1197715 | 1197710 | ID=Msa0095840-mRNA-1:exon:225;Parent=Msa0095840-mRNA-1 |
| chr1_3 | exon | 1199229 | 1199234 | 1199229 | ID=Msa0095840-mRNA-1:exon:224;Parent=Msa0095840-mRNA-1 |
| chr1_3 | exon | 1199531 | 1199722 | 1199531 | ID=Msa0095840-mRNA-1:exon:223;Parent=Msa0095840-mRNA-1 |
| chr1_3 | exon | 1200061 | 1200240 | 1200061 | ID=Msa0095840-mRNA-1:exon:222;Parent=Msa0095840-mRNA-1 |
| chr1_3 | exon | 1200532 | 1200588 | 1200532 | ID=Msa0095840-mRNA-1:exon:221;Parent=Msa0095840-mRNA-1 |
| chr1_3 | exon | 1200686 | 1200821 | 1200686 | ID=Msa0095840-mRNA-1:exon:220;Parent=Msa0095840-mRNA-1 |
| chr1_3 | exon | 1202408 | 1202493 | 1202408 | ID=Msa0095840-mRNA-1:exon:219;Parent=Msa0095840-mRNA-1 |
| chr1_3 | exon | 1202595 | 1202664 | 1202595 | ID=Msa0095840-mRNA-1:exon:218;Parent=Msa0095840-mRNA-1 |
| chr1_3 | exon | 1203664 | 1204126 | 1203664 | ID=Msa0095840-mRNA-1:exon:217;Parent=Msa0095840-mRNA-1 |
| chr1_3 | five_prime_UTR | 1203846 | 1204126 | 1203846 | ID=Msa0095840-mRNA-1:five_prime_utr;Parent=Msa0095840-mRNA-1 |
| chr1_3 | CDS | 1203664 | 1203845 | 1203664 | ID=Msa0095840-mRNA-1:cds;Parent=Msa0095840-mRNA-1 |
| chr1_3 | CDS | 1202595 | 1202664 | 1202595 | ID=Msa0095840-mRNA-1:cds;Parent=Msa0095840-mRNA-1 |
| chr1_3 | CDS | 1202408 | 1202493 | 1202408 | ID=Msa0095840-mRNA-1:cds;Parent=Msa0095840-mRNA-1 |
| chr1_3 | CDS | 1200686 | 1200821 | 1200686 | ID=Msa0095840-mRNA-1:cds;Parent=Msa0095840-mRNA-1 |
| chr1_3 | CDS | 1200532 | 1200588 | 1200532 | ID=Msa0095840-mRNA-1:cds;Parent=Msa0095840-mRNA-1 |
| chr1_3 | CDS | 1200061 | 1200240 | 1200061 | ID=Msa0095840-mRNA-1:cds;Parent=Msa0095840-mRNA-1 |
| chr1_3 | CDS | 1199531 | 1199722 | 1199531 | ID=Msa0095840-mRNA-1:cds;Parent=Msa0095840-mRNA-1 |
| chr1_3 | CDS | 1199229 | 1199234 | 1199229 | ID=Msa0095840-mRNA-1:cds;Parent=Msa0095840-mRNA-1 |
| chr1_3 | CDS | 1197710 | 1197715 | 1197710 | ID=Msa0095840-mRNA-1:cds;Parent=Msa0095840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
